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{"sheet":"Supplementary_Table2_sativaResu","index":0,"n_rows":42348,"n_cols":20,"rows_kept":4500,"cut":true,"merged":[[0,6,0,9],[0,15,0,16]],"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
[{"$nulls":6},"Transcripts per Million",{"$nulls":8},"position"]
["target_id","p_value","q_value","log2 of: average of TPM -Fe / average of TPM CC","ensemble_gene","name_gene","Sativa_CC1","Sativa_CC2","Sativa_Fe1","Sativa_Fe2","up/down regulated ","gene","description","RAPD_description","chromossome ","start","end","GO_id","name_1006","definition_1006"]
["OS01T0142300-02",2.72745008289546e-06,0.00430821685708245,-2.16685141860109,"OS01G0142300",null,2265.94617494557,2371.57692689769,507.366634708423,525.391948161655,"down","OS01G0142300","Os01g0142300 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZBM2]","Glycosyl transferase, group 1 domain containing protein. (Os01t0142300-01);Glycosyl transferase, group 1 domain containing protein. (Os01t0142300-02)",1,2275239,2278860,"GO:0009941;GO:0046510;GO:0009247;GO:0046506","chloroplast envelope;UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity;glycolipid biosynthetic process;sulfolipid biosynthetic process","The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Catalysis of the reaction: UDP-sulfoquinovose + 1,2-diacylglycerol = sulfoquinovosyldiacylglycerol + UDP. [MetaCyc:RXN-1224];The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators];The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. [PMID:9751667]"]
["OS02T0514500-01",2.0826092408342e-06,0.00430821685708245,-1.82687252513101,"OS02G0514500",null,5705.50330743199,5603.03725610217,1530.779208334,1656.81575445858,"down","OS02G0514500","Os02g0514500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJM6]","Similar to Glycerophosphoryl diester phosphodisterase (Fragment). (Os02t0514500-01)",2,18539295,18540807,"GO:0008081;GO:0005623;GO:0006629;GO:0008889;GO:0030643;GO:0046475","phosphoric diester hydrolase activity;cell;lipid metabolic process;glycerophosphodiester phosphodiesterase activity;cellular phosphate ion homeostasis;glycerophospholipid catabolic process","Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate. [EC:3.1.4.46];Any process involved in the maintenance of an internal steady state of phosphate ions at the level of a cell. [GOC:mah];The chemical reactions and pathways resulting in the breakdown of glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue. [ISBN:0198506732]"]
["OS06T0603600-02",4.79442829080922e-06,0.00430821685708245,-2.39297352313735,"OS06G0603600","SPX1",3473.30576038534,3731.68070881764,637.135408585769,734.618986237078,"down","OS06G0603600","SPX domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q69XJ0]","SPX domain-containing protein, Phosphate (Pi) homeostasis (Os06t0603600-01);SPX domain-containing protein, Phosphate (Pi) homeostasis (Os06t0603600-02)",6,23875437,23879965,"GO:0005783;GO:0016036;GO:0005634;GO:0070417;GO:0080040","endoplasmic reticulum;cellular response to phosphate starvation;nucleus;cellular response to cold;positive regulation of cellular response to phosphate starvation","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:jp];Any process that activates or increases the frequency, rate or extent of cellular response to phosphate starvation. [PMID:18315545]"]
["OS09T0115400-04",3.4877787651645195E-6,0.00430821685708245,-24.4913238805765,"OS09G0115400",null,734.774198960464,917.667167253109,0,7.0065292071370508E-5,"down","OS09G0115400","Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q6YYV1]","Similar to Poly(A)-binding protein. (Os09t0115400-01);Hypothetical conserved gene. (Os09t0115400-03);Hypothetical conserved gene. (Os09t0115400-04)",9,1212964,1218005,"GO:0003723;GO:0003676;GO:0005737","RNA binding;nucleic acid binding;cytoplasm","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS02T0208500-01",7.2401601079483e-06,0.005260520213584131,-1.8732710874260698,"OS02G0208500",null,2076.22023387108,2233.64667160069,622.499832584565,553.894900527159,"down","OS02G0208500","Os02g0208500 protein [Source:UniProtKB/TrEMBL;Acc:A3A4E0]","Conserved hypothetical protein. (Os02t0208500-01)",2,6078179,6079111]
["OS03T0815200-04",7.6111980175445e-06,0.005260520213584131,"-Inf","OS03G0815200",null,959.916264927633,1290.8009746296,0,0,"down","OS03G0815200","Probable methylenetetrahydrofolate reductase [Source:UniProtKB/Swiss-Prot;Acc:Q75HE6]","Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20). (Os03t0815200-01);Similar to Methylenetetrahydrofolate reductase. (Os03t0815200-02);Similar to Methylenetetrahydrofolate reductase. (Os03t0815200-03);Similar to Methylenetetrahydrofolate reductase (Fragment). (Os03t0815200-04)",3,34167824,34173328,"GO:0006730;GO:0005829;GO:0035999;GO:0055114;GO:0016491;GO:0006555;GO:0004489","one-carbon metabolic process;cytosol;tetrahydrofolate interconversion;oxidation-reduction process;oxidoreductase activity;methionine metabolic process;methylenetetrahydrofolate reductase (NAD(P)H) activity","The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. [GOC:hjd, GOC:mah, GOC:pde];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. [GOC:yaf, PMID:1825999, UniPathway:UPA00193];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Catalysis of the reaction: 5-methyltetrahydrofolate + NAD(P)+ = 5,10-methylenetetrahydrofolate + NAD(P)H + H+. [EC:1.5.1.20]"]
["OS06T0115800-02",8.18595681440069e-06,0.005260520213584131,-1.20105131853248,"OS06G0115800",null,3768.84065989414,3818.87721218675,1620.95966490876,1679.38047358538,"down","OS06G0115800","Os06g0115800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DF43]","Hypothetical conserved gene. (Os06t0115800-01);Conserved hypothetical protein. (Os06t0115800-02)",6,876948,880442,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS10T0162842-00",7.5931718519814893E-6,0.005260520213584131,-2.53092299253389,"OS10G0162842",null,2091.15622458081,1735.76316463784,327.485461053623,334.678555910575,"down","OS10G0162842","Os10g0162842 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRV9]","Hypothetical protein. (Os10t0162842-00)",10,4075770,4081525]
["OS11T0286800-04",1.16414557881769e-05,0.00589397342009979,-2.1424241656886602,"OS11G0286800",null,879.145840253388,911.071669868071,190.774511200332,214.707753396431,"down","OS11G0286800","Terpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:Q0IT98]","Squalene cyclase domain containing protein. (Os11t0286800-01);Similar to Cycloartenol synthase. (Os11t0286800-02);Similar to Cycloartenol synthase. (Os11t0286800-03);Similar to Cycloartenol synthase. (Os11t0286800-04)",11,10352224,10376610,"GO:0016853;GO:0016866","isomerase activity;intramolecular transferase activity","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Catalysis of the transfer of a functional group from one position to another within a single molecule. [GOC:mah]"]
["OS04T0555300-01",1.4875525822921302E-5,0.00668348624914546,-1.24327338748236,"OS04G0555300",null,4366.52328828246,4096.39540094562,1728.25199596742,1846.59604653148,"down","OS04G0555300","Os04g0555300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDN9]","Similar to glycerol 3-phosphate permease. (Os04t0555300-01);Similar to Glycerol 3-phosphate permease. (Os04t0555300-02)",4,27783578,27787138,"GO:0055085;GO:0016021;GO:0016020;GO:0006810;GO:0005215","transmembrane transport;integral component of membrane;membrane;transport;transporter activity","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS03T0320100-01",1.66635870719219e-05,0.007272941603162251,-1.11945042988661,"OS03G0320100",null,11519.6077973544,10850.1703066096,5061.95788628326,5234.16027693918,"down","OS03G0320100","Os03g0320100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DSC3]","Alpha-L-arabinofuranosidase, C-terminal domain containing protein. (Os03t0320100-01)",3,11549564,11551862,"GO:0009505;GO:0046373;GO:0046556","plant-type cell wall;L-arabinose metabolic process;alpha-L-arabinofuranosidase activity","A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. [CHEBI:30849, GOC:jsg, GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. [EC:3.2.1.55, GOC:mf]"]
["OS02T0802700-01",1.8784175875845702E-5,7.755326234578871E-3,-1.07755203393216,"OS02G0802700",null,2208.72324339648,2330.40371636127,1071.32416328817,1079.4600795106,"down","OS02G0802700","Os02g0802700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQS5]","Similar to MGDG synthase type A. (Os02t0802700-01);Monogalactosyldiacylglycerol synthase, Salt, drought, submergence stress tolerance (Os02t0802700-02)",2,34223237,34227448,"GO:0031969;GO:0009535;GO:0009416;GO:0009247;GO:0009536;GO:0009507;GO:0016758;GO:0016757;GO:0016020;GO:0016740;GO:0046509;GO:0009739;GO:0009409;GO:0009414;GO:0009651;GO:0009735;GO:0030912;GO:0045017","chloroplast membrane;chloroplast thylakoid membrane;response to light stimulus;glycolipid biosynthetic process;plastid;chloroplast;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;membrane;transferase activity;1,2-diacylglycerol 3-beta-galactosyltransferase activity;response to gibberellin;response to cold;response to water deprivation;response to salt stress;response to cytokinin;response to deep water;glycerolipid biosynthetic process","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 1,2-diacyl-sn-glycerol + UDP-D-galactose = 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + H(+) + UDP. [EC:2.4.1.46, RHEA:14948];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a deep water stimulus, being immersed in standing deep water throughout the life cycle. [GOC:mah];The chemical reactions and pathways resulting in the formation of glycerolipids, any lipid with a glycerol backbone. [GOC:ai]"]
["OS11T0106700-02",1.9930389111389604E-5,0.00790796426144384,-2.11719046971173,"OS11G0106700",null,1012.51198718001,1154.07275085258,233.939721322273,265.447978931909,"down","OS11G0106700","Ferritin [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSB1]","Similar to Ferritin 1, chloroplast precursor (EC 1.16.3.1) (ZmFer1). (Os11t0106700-01);Similar to Ferritin 1, chloroplast precursor (EC 1.16.3.1) (ZmFer1). (Os11t0106700-02)",11,305050,307728,"GO:0006879;GO:0004322;GO:0006826;GO:0008199;GO:0005623;GO:0055114;GO:0046872;GO:0016491","cellular iron ion homeostasis;ferroxidase activity;iron ion transport;ferric iron binding;cell;oxidation-reduction process;metal ion binding;oxidoreductase activity","Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. [GOC:ai, GOC:mah];Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O. [EC:1.16.3.1];The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with ferric iron, Fe(III). [GOC:ai];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS02T0115700-03",2.0768269192322003E-5,0.007999972901721011,-1.4422791018524,"OS02G0115700","CATA",3989.51699612192,3609.84642493055,1333.35570013983,1463.09998991292,"down","OS02G0115700","Catalase [Source:UniProtKB/TrEMBL;Acc:B7EAG0]","Catalase isozyme A (EC 1.11.1.6) (CAT-A). (Os02t0115700-01);Similar to Catalase. (Os02t0115700-02);Similar to Catalase. (Os02t0115700-03)",2,825041,827640,"GO:0004096;GO:0098869;GO:0055114;GO:0006979;GO:0020037;GO:0009514;GO:0042542;GO:0005777;GO:0042744;GO:0005739;GO:0004601;GO:0046872;GO:0016491","catalase activity;cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding;glyoxysome;response to hydrogen peroxide;peroxisome;hydrogen peroxide catabolic process;mitochondrion;peroxidase activity;metal ion binding;oxidoreductase activity","Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O. [EC:1.11.1.6];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A specialized form of peroxisome that contains the enzymes of the glyoxylate pathway. The glyoxysome is found in some plant cells, notably the cells of germinating seeds. [GOC:dhl, ISBN:0140514031];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS06T0115300-01",2.0874346250047904E-5,0.007999972901721011,-1.45543084055503,"OS06G0115300",null,1334.20338052884,1517.23280826701,511.269454975411,528.495839832792,"down","OS06G0115300","Os06g0115300 protein [Source:UniProtKB/TrEMBL;Acc:Q5VRM0]","Acyl-CoA-binding protein , Stress response (Os06t0115300-01)",6,860908,862566,"GO:0000062","fatty-acyl-CoA binding","Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group. [GOC:jl, ISBN:0198506732]"]
["OS10T0555100-01",2.0950074384396904E-5,0.007999972901721011,-1.45944838296163,"OS10G0555100",null,1043.71601349238,1149.76190422948,410.771833100473,386.847232114206,"down","OS10G0555100","Glycogenin glucosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q9AV15]","Similar to DNA chromosome 4, ESSA I CONTIG fragment NO. 6 (Glucosyltransferase like protein). (Os10t0555100-01)",10,21798929,21802616,"GO:0006486;GO:0016757;GO:0016020;GO:0016021;GO:0016740;GO:0008466;GO:0102751","protein glycosylation;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;transferase activity;glycogenin glucosyltransferase activity;","A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin. [EC:2.4.1.186];"]
["OS04T0659200-01",2.36049946021279e-05,0.008385811570746641,-1.57193913422867,"OS04G0659200",null,979.503016568534,1121.9699871174,349.302413895414,357.540623620706,"down","OS04G0659200","Os04g0659200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFZ4]","Hypothetical protein. (Os04t0659200-01)",4,33635910,33638396,"GO:0015074;GO:0003676","DNA integration;nucleic acid binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0238600-01",2.4915163839122202E-5,0.008650091881964351,-0.9815011448307591,"OS03G0238600",null,8687.92468173034,9134.74747494802,4421.77640560629,4604.56036809999,"down","OS03G0238600","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q10PD0]","Similar to Purple acid phosphatase. (Os03t0238600-01)",3,7322529,7325182,"GO:0003993;GO:0016311;GO:0016787","acid phosphatase activity;dephosphorylation;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS08T0156600-01",2.8894086697367304E-5,0.009391192944446451,-1.77675896017282,"OS08G0156600",null,3561.71782943016,3905.99239866473,1004.1661346834,1175.19757812749,"down","OS08G0156600","Os08g0156600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7X7]","Major facilitator superfamily protein. (Os08t0156600-01);Similar to glycerol 3-phosphate permease. (Os08t0156600-02)",8,3281105,3284469,"GO:0055085;GO:0016021;GO:0016020;GO:0006810;GO:0005215","transmembrane transport;integral component of membrane;membrane;transport;transporter activity","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS08T0314800-04",3.16093292844949e-05,9.77039963088467E-3,-20.1012693758351,"OS08G0314800",null,1469.83292926831,1981.5938936801,4.4606871426158704E-5,0.00302380487670306,"down","OS08G0314800","Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q6Z050]","Similar to Poly(A)-binding protein. (Os08t0314800-01);Similar to Poly(A)-binding protein. (Os08t0314800-02);Hypothetical conserved gene. (Os08t0314800-03);Hypothetical conserved gene. (Os08t0314800-04)",8,13471744,13479204,"GO:0003723;GO:0003676;GO:0005737","RNA binding;nucleic acid binding;cytoplasm","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS02T0202200-01",3.55522742673862e-05,0.0105455639166717,-2.71540756286631,"OS02G0202200","SPX2",1257.75933657187,973.746429186291,158.064220813009,181.700972659703,"down","OS02G0202200","SPX domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z784]","SPX domain-containing protein, Pi-dependent inhibition of phosphate starvation responses (Os02t0202200-01)",2,5706636,5709119,"GO:0005783;GO:0016036;GO:0005634;GO:0070417","endoplasmic reticulum;cellular response to phosphate starvation;nucleus;cellular response to cold","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:jp]"]
["OS01T0741900-01",3.6624984675778205E-5,0.0107592935751382,-0.859255745964118,"OS01G0741900","IAA6",2524.69195841858,2586.70695195048,1406.96670624913,1410.62475548716,"down","OS01G0741900","Auxin-responsive protein IAA6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LQ74]","Auxin-responsive protein, Drought tolerance, Control of tiller outgrowth (Os01t0741900-01)",1,30975765,30979337,"GO:0009733;GO:0005634;GO:0009734;GO:0006355;GO:0006351;GO:0006417","response to auxin;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated;regulation of translation","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete]"]
["OS04T0652700-02",4.07849358714042e-05,0.011476014061067,-1.02706429083625,"OS04G0652700",null,5102.6290830392,4955.24123300346,2336.36231753736,2599.1117303448,"down","OS04G0652700","Os04g0652700 protein [Source:UniProtKB/TrEMBL;Acc:B9FCW0]","Similar to Nuclease PA3. (Os04t0652700-01);Similar to nuclease PA3. (Os04t0652700-02)",4,33253920,33256572,"GO:0006308;GO:0004519;GO:0016788;GO:0090305;GO:0003676","DNA catabolic process;endonuclease activity;hydrolase activity, acting on ester bonds;nucleic acid phosphodiester bond hydrolysis;nucleic acid binding","The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:go_curators, ISBN:0198506732];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of any ester bond. [GOC:jl];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS10T0116800-01",4.03097540132667e-05,0.011476014061067,-1.99677578663358,"OS10G0116800",null,422.990376561854,395.262821149615,103.424737075178,101.596242777468,"down","OS10G0116800","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q7XH73]","Similar to Purple acid phosphatase. (Os10t0116800-01)",10,1082947,1084984,"GO:0003993;GO:0016311;GO:0016787","acid phosphatase activity;dephosphorylation;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS08T0280100-01",4.7360228378019208E-5,0.0121592411546659,-2.9087348247327203,"OS08G0280100",null,265.798730504672,253.602966578586,31.9501009568694,37.2149868501069,"down","OS08G0280100","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q6ZCX8]","Similar to Phytase. (Os08t0280100-01);Similar to Phytase. (Os08t0280100-02)",8,10899946,10909610,"GO:0003993;GO:0016311;GO:0046872;GO:0016787;GO:0016020;GO:0016021","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity;membrane;integral component of membrane","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0542150-01",4.85684286777322E-5,0.0122972551968016,-1.8883253914720401,"OS05G0542150",null,545.314533476914,621.807967575607,146.894646426657,168.368973223744,"down","OS05G0542150","Os05g0542150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPM9]","Hypothetical gene. (Os05t0542150-01)",5,26911303,26914371]
["OS03T0406100-01",5.1219869813820104E-5,0.0125938116022876,-3.20807373455869,"OS03G0406100",null,195.696752529822,183.220786887061,21.4655114684333,19.537738995667,"down","OS03G0406100","Os03g0406100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KHF0]","SPX domain-containing protein, Negative regulation of phosphate signaling, Pi homeostasis (Os03t0406100-01)",3,16645952,16646434,"GO:0016036","cellular response to phosphate starvation","Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]"]
["OS04T0438600-01",5.2350552287592407E-5,0.0125938116022876,-1.88718055693908,"OS04G0438600",null,377.123950187677,428.20138957875,114.157492809395,103.550016677035,"down","OS04G0438600","Os04g0438600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JD08]","Glycolipid transfer protein, GLTP domain containing protein. (Os04t0438600-01)",4,21812159,21816137,"GO:0005737;GO:0120013;GO:0120009","cytoplasm;intermembrane lipid transfer activity;intermembrane lipid transfer","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Enables the removal of a lipid from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. [GOC:krc, PMID:20823909, PMID:24220498, PMID:25797198];The transport of lipids between membranes in which a lipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). [GOC:krc, PMID:20823909, PMID:24220498, PMID:25797198]"]
["OS05T0508800-01",5.3934010333033009E-5,0.0128733740913658,-1.01963683391327,"OS05G0508800",null,1350.51144323965,1450.32634114533,667.382265654925,714.104360291628,"down","OS05G0508800","Os05g0508800 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4X2]","Similar to H1flk (Fragment). (Os05t0508800-01)",5,25188258,25193047,"GO:0016301;GO:0016310;GO:0005524","kinase activity;phosphorylation;ATP binding","Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0285700-01",5.69069547660452e-05,0.0133740098616324,-1.00829957688832,"OS03G0285700","APX1",25225.5152518779,26295.2709090835,12407.0656287544,13205.5577871713,"down","OS03G0285700","L-ascorbate peroxidase 1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q10N21]","Similar to L-ascorbate peroxidase. (Os03t0285700-01)",3,9843336,9846670,"GO:0016688;GO:0042744;GO:0034599;GO:0000302;GO:0004130;GO:0009507;GO:0005737;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0006979;GO:0020037","L-ascorbate peroxidase activity;hydrogen peroxide catabolic process;cellular response to oxidative stress;response to reactive oxygen species;cytochrome-c peroxidase activity;chloroplast;cytoplasm;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;response to oxidative stress;heme binding","Catalysis of the reaction: L-ascorbate + hydrogen peroxide = dehydroascorbate + 2 H2O. [EC:1.11.1.11];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc];Catalysis of the reaction: 2 ferrocytochrome c + hydrogen peroxide = 2 ferricytochrome c + 2 H2O. [EC:1.11.1.5];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS10T0100500-02",6.2332584038052809E-5,0.0137006122843927,-1.39291858447575,"OS10G0100500",null,649.36581964377,629.786559767493,246.640055689594,240.453077994403,"down","OS10G0100500","Os10g0100500 protein [Source:UniProtKB/TrEMBL;Acc:Q33BK6]","Serine/threonine protein kinase-related domain containing protein. (Os10t0100500-01);Similar to predicted protein. (Os10t0100500-02)",10,67119,72969,"GO:0016567;GO:0004842;GO:0006468;GO:0005524;GO:0004672;GO:0006950","protein ubiquitination;ubiquitin-protein transferase activity;protein phosphorylation;ATP binding;protein kinase activity;response to stress","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS01T0551800-01",6.3899050261019311E-5,0.0137987304745898,-1.03071180776176,"OS01G0551800",null,963.194953857716,903.75197127438,457.605676304327,456.206205548824,"down","OS01G0551800","Putative protein ABIL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5JKN2]","Similar to protein ABIL1. (Os01t0551800-01)",1,20714138,20716704,"GO:0005856;GO:0005737","cytoskeleton;cytoplasm","Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS04T0450100-02",6.9822138140002309E-5,0.0146027301779562,-0.850773797794092,"OS04G0450100",null,1461.61012045711,1531.64343195476,814.7137307337171,845.007211562597,"down","OS04G0450100","OSJNBa0086B14.2 protein [Source:UniProtKB/TrEMBL;Acc:Q7XV53]","Protein of unknown function DUF341 domain containing protein. (Os04t0450100-01);Similar to H0818E04.16 protein. (Os04t0450100-02)",4,22428835,22431568]
["OS03T0242300-01",7.2148446467911714E-5,0.014670831612695799,-0.8295091716374241,"OS03G0242300",null,2263.76295504549,2457.01133876076,1347.44869717756,1309.02851270969,"down","OS03G0242300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P95]","Hypothetical protein. (Os03t0242300-01)",3,7519754,7521478]
["OS04T0598000-01",7.33735768830914e-05,0.014670831612695799,-0.8537749660040511,"OS04G0598000",null,3712.12277455005,3352.52866792786,1928.96891695875,1980.14984721085,"down","OS04G0598000","OSJNba0093F12.14 protein [Source:UniProtKB/TrEMBL;Acc:Q0JAI3]","Similar to OSJNba0093F12.14 protein. (Os04t0598000-01)",4,30172150,30174209]
["OS04T0640600-01",7.74297349164321e-05,0.015164315776710499,-0.8552862077743121,"OS04G0640600",null,1622.21623209009,1632.42876480161,866.966645876208,932.056790422786,"down","OS04G0640600","Os04g0640600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFI9]","Shikimate kinase. (Os04t0640600-01);Similar to OSIGBa0138H21-OSIGBa0138E01.13 protein. (Os04t0640600-02)",4,32582187,32585691]
["OS05T0415800-01",7.9745258146818012E-5,0.015227357043134899,-1.01614162283136,"OS05G0415800",null,1221.06619547253,1142.55659238561,554.200477912277,614.461891413726,"down","OS05G0415800","Os05g0415800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WME8]","Similar to Cytochrome P450 CYP51H10. (Os05t0415800-01)",5,20325340,20328408,"GO:0016126;GO:0005783;GO:0005886;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0070988;GO:0008398;GO:0016020;GO:0016021","sterol biosynthetic process;endoplasmic reticulum;plasma membrane;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;demethylation;sterol 14-demethylase activity;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The process of removing one or more methyl groups from a molecule. [GOC:BHF, GOC:rl];Catalysis of the reaction: obtusifoliol + 3 O2 + 3 NADPH + 3 H+ = 4-alpha-methyl-5-alpha-ergosta-8,14,24(28)-trien-3-beta-ol + formate + 3 NADP+ + 3 H2O. [EC:1.14.13.70];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0515700-01",7.95415957869985e-05,0.015227357043134899,-1.23292084333035,"OS08G0515700",null,3945.53192209864,4398.32821555288,1669.43136920406,1880.50737833295,"down","OS08G0515700","Os08g0515700 protein [Source:UniProtKB/TrEMBL;Acc:Q7EZ88]","Protein of unknown function DUF547 domain containing protein. (Os08t0515700-01)",8,25584990,25589000]
["OS11T0210500-02",8.2649821298953e-05,0.015587144076084001,-1.23980064817963,"OS11G0210500","ADH2",5807.61926585251,4966.34335124634,2229.09080802384,2332.94070143225,"down","OS11G0210500","Alcohol dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0ITW7]","Similar to Alcohol dehydrogenase. (Os11t0210500-01);Similar to Alcohol dehydrogenase. (Os11t0210500-02)",11,5745005,5748092,"GO:0055114;GO:0004022;GO:0005737;GO:0046872;GO:0016491;GO:0008270","oxidation-reduction process;alcohol dehydrogenase (NAD) activity;cytoplasm;metal ion binding;oxidoreductase activity;zinc ion binding","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+. [EC:1.1.1.1];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS02T0703600-01",8.4632521688222717E-5,0.0158046708751517,-0.9198005369223351,"OS02G0703600",null,975.417723152582,995.362364717911,511.269454975411,530.449613732358,"down","OS02G0703600","Os02g0703600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VNB7]","Similar to Abscisic acid 8'-hydroxylase 1. (Os02t0703600-01)",2,28995717,28998452,"GO:0046345;GO:0016125;GO:0010268;GO:0010295;GO:0007275;GO:0016132;GO:0016709;GO:0005789;GO:0005783;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021;GO:0009687","abscisic acid catabolic process;sterol metabolic process;brassinosteroid homeostasis;(+)-abscisic acid 8'-hydroxylase activity;multicellular organism development;brassinosteroid biosynthetic process;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;endoplasmic reticulum membrane;endoplasmic reticulum;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane;abscisic acid metabolic process","The chemical reactions and pathways resulting in the breakdown of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. [GOC:ai];The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];Catalysis of the reaction: (+)-abscisate + H(+) + NADPH + O(2) = (+)-8'-hydroxyabscisate + H(2)O + NADP(+). [EC:1.14.13.93, RHEA:12900];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways involving abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. [ISBN:0387969845]"]
["OS07T0191200-02",8.647865492561791E-5,0.0158209333250747,-0.7615782619216891,"OS07G0191200",null,9267.10862642543,9907.04266763889,5742.9376300241,5566.94893184685,"down","OS07G0191200","Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:Q8L6I2]","Plasma membrane H+ ATPase (EC 3.6.3.6). (Os07t0191200-01);Similar to Plasma membrane H+-ATPase. (Os07t0191200-02)",7,4914656,4920788,"GO:0006754;GO:0008553;GO:0015992;GO:1902600;GO:0006810;GO:0016887;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","ATP biosynthetic process;hydrogen-exporting ATPase activity, phosphorylative mechanism;proton transport;hydrogen ion transmembrane transport;transport;ATPase activity;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators, ISBN:0198506732];Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. [EC:3.6.3.6];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0838350-01",8.9454837275537315E-5,0.0160766128731895,-3.2036555180131,"OS01G0838350",null,2375.88088618237,2724.63720724748,220.509345084814,333.118449876122,"down","OS01G0838350","Os01g0838350 protein [Source:UniProtKB/TrEMBL;Acc:C7IWY2]","Conserved hypothetical protein. (Os01t0838350-01)",1,35958635,35959019]
["OS03T0368900-01",9.7512475192809009E-5,0.0170240065262326,-2.77727935419392,"OS03G0368900",null,14169.5484512014,14466.4317801875,1692.09623939063,2484.93441025537,"down","OS03G0368900","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5U1P8]","Haem peroxidase family protein. (Os03t0368900-01)",3,14469692,14471204,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS04T0513400-01",9.9866783269424414E-5,0.0170930490532417,-2.5514748105056,"OS04G0513400",null,415.759222124598,397.441856819694,81.4984830753401,57.217816526149,"down","OS04G0513400","Os04g0513400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCR8]","Similar to Beta-glucosidase. (Os04t0513400-01);Similar to Beta-glucosidase. (Os04t0513400-02)",4,25658339,25667057,"GO:0004553;GO:0005975","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS07T0281800-01",1.0282318049086401E-4,0.0171664142642452,-1.44589281945101,"OS07G0281800",null,492.565804232916,463.785349910427,161.573104539424,189.469862946122,"down","OS07G0281800","Os07g0281800 protein [Source:UniProtKB/TrEMBL;Acc:Q0D782]","Similar to Aldehyde oxidase-2. (Os07t0281800-01)",7,10735655,10738019,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS03T0368300-01",1.0583839701780901E-4,0.0171998824185982,-2.4259450447324102,"OS03G0368300",null,932.905423479145,1101.65194802396,161.286533240685,217.319660566915,"down","OS03G0368300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q10KW1]","Similar to Peroxidase 1. (Os03t0368300-01)",3,14445504,14446878,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0009733;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0016020;GO:0016021","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;response to auxin;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;membrane;integral component of membrane","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0373000-00",1.0583850139750201E-4,0.0171998824185982,-0.8796356025003641,"OS08G0373000",null,1136.46812016016,1040.65289630797,587.374450181674,595.901039367843,"down","OS08G0373000","Os08g0373000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFC4]","Hypothetical conserved gene. (Os08t0373000-00)",8,17451964,17455703,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS08T0536000-01",1.0436449701032E-4,0.0171998824185982,-0.64660340604806,"OS08G0536000",null,5186.44381741872,5102.49297441281,3228.15821803353,3344.23409003118,"down","OS08G0536000","Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6Z1G7]","Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1). (Os08t0536000-01)",8,26777982,26783294,"GO:0004739;GO:0005759;GO:0006096;GO:0006086;GO:0005739;GO:0055114;GO:0016491;GO:0008152;GO:0003824","pyruvate dehydrogenase (acetyl-transferring) activity;mitochondrial matrix;glycolytic process;acetyl-CoA biosynthetic process from pyruvate;mitochondrion;oxidation-reduction process;oxidoreductase activity;metabolic process;catalytic activity","Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. [EC:1.2.4.1];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. [GOC:dph, GOC:go_curators, GOC:tb];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0581600-01",1.0489885535775901E-4,0.0171998824185982,-0.77580734554824,"OS12G0581600","NRAMP6",1300.56800118777,1275.34019636555,737.633030460707,766.856255579929,"down","OS12G0581600","Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q2QN30]","Similar to Integral membrane protein. (Os12t0581600-01)",12,24119866,24123724,"GO:0055072;GO:0006810;GO:0005215;GO:0006811;GO:0016020;GO:0016021","iron ion homeostasis;transport;transporter activity;ion transport;membrane;integral component of membrane","Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0396900-01",1.0741156640794601E-4,0.017273143802154,-1.17642607302217,"OS09G0396900",null,654.361016271591,707.149890962983,283.930174423367,318.465145629372,"down","OS09G0396900","Os09g0396900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMS4]","Protein of unknown function DUF125, transmembrane family protein. (Os09t0396900-01);Vacuolar membrane transporter, Fe and Zn translocation between flag leaves and seeds (Os09t0396900-02)",9,13831870,13833601,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0453000-01",1.0742004852085801E-4,0.017273143802154,-1.05458611669242,"OS10G0453000",null,818.460897299202,803.906935723566,366.86510509686,414.20006670814,"down","OS10G0453000","Os10g0453000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRW0]","Hypothetical protein. (Os10t0453000-01)",10,16518769,16519232,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0752800-02",1.1343705491552901E-4,0.017772968727073003,-12.1320579010101,"OS02G0752800",null,2031.4698951049,1708.72000255232,4.8369384949850393E-7,0.8332590964142651,"down","OS02G0752800","Os02g0752800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZGQ0]","Similar to Dehydration responsive element binding protein 2B (DREB2B protein). (Os02t0752800-01);Similar to Dehydration responsive element binding protein 2B (DREB2B protein). (Os02t0752800-02)",2,31648754,31650407,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0666800-01",1.13278207345007E-4,0.017772968727073003,-1.90476916678296,"OS04G0666800",null,524.915768504469,601.128873831706,132.695889077587,168.024555362736,"down","OS04G0666800","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WG65]","Similar to H1005F08.21 protein. (Os04t0666800-01)",4,34038375,34039430,"GO:0016853;GO:0009507;GO:0048046;GO:0005576","isomerase activity;chloroplast;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0793800-01",1.1566711995034301E-4,0.0179383850188978,-1.68215999866106,"OS03G0793800",null,279.275573922766,316.00439086701,90.7405712074679,94.7580341289848,"down","OS03G0793800","Os03g0793800 protein [Source:UniProtKB/TrEMBL;Acc:Q852L3]","Plant lipid transfer protein and hydrophobic protein, helical domain containing protein. (Os03t0793800-01)",3,33023016,33023942,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS01T0127000-01",1.2655279857185002E-4,0.0179635950816301,-5.54672339533687,"OS01G0127000",null,1561.30066824054,1613.17168971223,20.5078383488252,47.4033656447152,"down","OS01G0127000",null,"Multicopper oxidase, Maintenance of Pi homeostasis (Os01t0127000-01)",1,1490494,1492334,"GO:0016722;GO:0005789;GO:0005783;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0016020","oxidoreductase activity, oxidizing metal ions;endoplasmic reticulum membrane;endoplasmic reticulum;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;membrane","Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. [GOC:mah];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0700100-01",1.26817529669761E-4,0.0179635950816301,-0.9538406893115071,"OS01G0700100","SWEET2B",748.132376858797,764.792385713969,373.695040564088,407.361858059656,"down","OS01G0700100","Bidirectional sugar transporter SWEET2b [Source:UniProtKB/Swiss-Prot;Acc:Q5N8J1]","MtN3 and saliva related transmembrane protein family protein. (Os01t0700100-01)",1,28975565,28977344,"GO:0016021;GO:0008643;GO:0005886;GO:0006810;GO:0005887;GO:0034219;GO:0051119;GO:0016020","integral component of membrane;carbohydrate transport;plasma membrane;transport;integral component of plasma membrane;carbohydrate transmembrane transport;sugar transmembrane transporter activity;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of a sugar from one side of the membrane to the other. A sugar is any member of a class of sweet, water-soluble, crystallizable carbohydrates, which are the monosaccharides and smaller oligosaccharides. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0941800-01",1.22214323737127E-4,0.0179635950816301,-2.4998302423384198,"OS01G0941800",null,186.049465483925,233.657969794174,33.1739722693969,41.0292518909007,"down","OS01G0941800","Probable inactive purple acid phosphatase 16 [Source:Projected from Arabidopsis thaliana (AT3G10150) UniProtKB/Swiss-Prot;Acc:Q9SR79]","Metallophosphoesterase domain containing protein. (Os01t0941800-01);Similar to predicted protein. (Os01t0941800-02)",1,41384339,41386372,"GO:0016787;GO:0016020","hydrolase activity;membrane","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0246500-03",1.27579131028813E-4,0.0179635950816301,"-Inf","OS03G0246500",null,200.538051865953,230.988991537651,0,0,"down","OS03G0246500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P54]","Protein of unknown function DUF869, plant family protein. (Os03t0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non-protein coding transcript. (Os03t0246500-03)",3,7740991,7749358]
["OS05T0401500-01",1.1764081520960101E-4,0.0179635950816301,-0.841142376712335,"OS05G0401500",null,1279.16366887982,1339.158672697,700.556237924322,760.994933881229,"down","OS05G0401500","Os05g0401500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKR1]","Similar to oxidoreductase, 2OG-Fe oxygenase family protein. (Os05t0401500-01)",5,19525140,19525710]
["OS05T0475400-01",1.1837498945877301E-4,0.0179635950816301,-0.708044417149415,"OS05G0475400",null,1854.76172466486,1752.29547560594,1110.26166728202,1097.79605070572,"down","OS05G0475400","Os05g0475400 protein [Source:UniProtKB/TrEMBL;Acc:Q65WV6]","Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment). (Os05t0475400-01);Aminotransferase, Regulation of abiotic stress responses (Os05t0475400-02)",5,23356169,23358450,"GO:0042802;GO:0005739;GO:0030170;GO:0008483;GO:0008453;GO:0003824;GO:0016740","identical protein binding;mitochondrion;pyridoxal phosphate binding;transaminase activity;alanine-glyoxylate transaminase activity;catalytic activity;transferase activity","Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine. [EC:2.6.1.44];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0100300-03",1.1805240243428501E-4,0.0179635950816301,-1.0542782659571,"OS07G0100300",null,817.679571707228,920.931943216773,421.285594607472,415.922020245682,"down","OS07G0100300","Os07g0100300 protein [Source:UniProtKB/TrEMBL;Acc:Q69LA5]","Conserved hypothetical protein. (Os07t0100300-01);Similar to SQD2 (sulfoquinovosyldiacylglycerol 2); UDP-glycosyltransferase/ UDP-sulfoquinovose:DAG sulfoquinovosyltransferase/ transferase, transferring glycosyl groups. (Os07t0100300-02);Similar to predicted protein. (Os07t0100300-03)",7,17519,21402,"GO:0016020;GO:0016021;GO:0009941;GO:0046510;GO:0009247;GO:0046506","membrane;integral component of membrane;chloroplast envelope;UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity;glycolipid biosynthetic process;sulfolipid biosynthetic process","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Catalysis of the reaction: UDP-sulfoquinovose + 1,2-diacylglycerol = sulfoquinovosyldiacylglycerol + UDP. [MetaCyc:RXN-1224];The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators];The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. [PMID:9751667]"]
["OS11T0282300-01",1.1675054423627801E-4,0.0179635950816301,-0.9734841257429371,"OS11G0282300",null,1226.73126783679,1221.41139064227,579.825123965768,666.95192575575,"down","OS11G0282300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53NY5]","Protein of unknown function DUF1685 domain containing protein. (Os11t0282300-01)",11,10068284,10069734]
["OS12T0569200-01",1.2032448647488001E-4,0.0179635950816301,-0.868191027407165,"OS12G0569200",null,5122.77019903585,5655.14046717705,3065.66531971897,2838.83347607041,"down","OS12G0569200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QND9]","Conserved hypothetical protein. (Os12t0569200-01)",12,23420042,23420841]
["OS01T0719600-01",1.2961540913703602E-4,0.0180822373513914,-0.8819042520090191,"OS01G0719600",null,858.211800156822,841.992155469753,446.872920570111,475.743944544491,"down","OS01G0719600","Os01g0719600 protein [Source:UniProtKB/TrEMBL;Acc:Q5JL91]","Heavy metal transport/detoxification protein domain containing protein. (Os01t0719600-01)",1,30003535,30005888,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0369900-01",0.000133545794168418,0.018119453382360498,-2.46558770429169,"OS01G0369900",null,210.284846479445,186.419672054816,38.4160753060372,33.4048988175003,"down","OS01G0369900","Os01g0369900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V2I5]","Similar to 12-oxo-phytodienoic acid reductase6. (Os01t0369900-01)",1,15185168,15188301,"GO:0010181;GO:0016491;GO:0055114;GO:0003824","FMN binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0644900-01",1.3179558246070102E-4,0.018119453382360498,-1.3040761438721,"OS01G0644900",null,606.456082058562,733.912477811655,269.294598422163,273.528345939338,"down","OS01G0644900","Os01g0644900 protein [Source:UniProtKB/TrEMBL;Acc:Q5VRC1]","Conserved hypothetical protein. (Os01t0644900-01)",1,25957753,25958568]
["OS05T0178300-01",1.3574756963615902E-4,0.0181901743312453,-0.7037785049496841,"OS05G0178300",null,1998.21547893812,2043.05172041206,1196.10738970949,1285.07748850225,"down","OS05G0178300","Os05g0178300 protein [Source:UniProtKB/TrEMBL;Acc:B9FMS2]","Similar to Cadmium tolerant 1. (Os05t0178300-01)",5,4665325,4667853]
["OS11T0303800-01",0.000138527422025112,0.018390409718641698,-1.24039432131397,"OS11G0303800",null,544.281592973566,602.158204095117,226.363575485296,258.875041692587,"down","OS11G0303800","Os11g0303800 protein [Source:UniProtKB/TrEMBL;Acc:Q6EQL9]","Hypothetical protein. (Os11t0303800-01)",11,11436951,11446262,"GO:0005737;GO:0005840;GO:0004364;GO:0006749","cytoplasm;ribosome;glutathione transferase activity;glutathione metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732]"]
["OS09T0438000-01",0.000139750439137486,0.018403687140209003,-0.6064109875502951,"OS09G0438000",null,3180.07905384856,3184.83747298987,2064.28426871575,2116.37540699881,"down","OS09G0438000","Os09g0438000 protein [Source:UniProtKB/TrEMBL;Acc:Q69LJ7]","Similar to RbohAOsp (Fragment). (Os09t0438000-01);Similar to Respiratory burst oxidase-like protein E. (Os09t0438000-02)",9,16186282,16197135,"GO:0050664;GO:0005509;GO:0055114;GO:0016491;GO:0098869;GO:0004601;GO:0016020;GO:0016021","oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor;calcium ion binding;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification;peroxidase activity;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule. [EC:1.6.3.-];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0455400-01",1.4367191928070402E-4,0.0187583952045474,-1.05768579825052,"OS05G0455400",null,2194.45368852451,2022.63396760155,943.506799544317,1082.39074035995,"down","OS05G0455400","Os05g0455400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WN34]","Similar to DNA binding protein. (Os05t0455400-01)",5,22371227,22373519,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS09T0287000-01",0.00014771065377723,0.0188822422351546,-2.41510602022605,"OS09G0287000",null,424.349470537467,403.497463256899,91.7162762742149,63.4976517359177,"down","OS09G0287000","AP2/ERF domain protein [Source:UniProtKB/TrEMBL;Acc:Q6EN65]","Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5). (Os09t0287000-01)",9,6404482,6406039,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS11T0126800-01",0.000148905454208847,0.0189217185928324,-0.815477979370626,"OS11G0126800",null,901.625212041092,923.875364356895,506.143172144277,531.14312749152,"down","OS11G0126800","Os11g0126800 protein [Source:UniProtKB/TrEMBL;Acc:Q0IUZ4]","Nucleoside phosphatase GDA1/CD39 family protein. (Os11t0126800-01)",11,1225190,1226553,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0183000-03",0.00015698984271054,0.0195769537734384,-0.81623790192146,"OS03G0183000",null,7030.42687221232,6836.26858185262,3695.95644136009,4179.23074580725,"down","OS03G0183000","AP2 domain containing protein [Source:UniProtKB/TrEMBL;Acc:Q10QU5]","Similar to AP2 domain containing protein RAP2.6 (Fragment). (Os03t0183000-01);Similar to AP2 domain containing protein RAP2.6 (Fragment). (Os03t0183000-02);Similar to Root abundant factor. (Os03t0183000-03)",3,4348736,4350531,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0609000-01",1.63492246179757E-4,0.020141189940661098,-5.96998858321435,"OS02G0609000",null,201.812276046379,226.4526579503,4.87852533373483,1.9537738995667,"down","OS02G0609000","Os02g0609000 protein [Source:UniProtKB/TrEMBL;Acc:Q6K1X4]","Hypothetical protein. (Os02t0609000-01)",2,23900438,23900923]
["OS08T0297800-01",1.6670741041336002E-4,0.0202918119639402,-1.34010129866597,"OS08G0297800",null,339.411555168909,367.470904037533,145.380054945298,133.833512120319,"down","OS08G0297800","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:Q6YV45]","Sulfotransferase family protein. (Os08t0297800-01)",8,12066869,12068457,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0467200-01",0.000168398394557341,0.0203356037569798,-1.5781496687985799,"OS07G0467200",null,231.370639709737,240.863281638047,81.9592256067452,76.1971820831012,"down","OS07G0467200","CDGSH iron-sulfur domain-containing protein NEET [Source:Projected from Arabidopsis thaliana (AT5G51720) UniProtKB/Swiss-Prot;Acc:Q9FLI7]","Similar to Clone ZZD536 mRNA sequence. (Os07t0467200-01)",7,16600103,16601979,"GO:0043231;GO:0051537;GO:0010150;GO:0055072;GO:0072593;GO:0005739;GO:0009507;GO:0009570","intracellular membrane-bounded organelle;2 iron, 2 sulfur cluster binding;leaf senescence;iron ion homeostasis;reactive oxygen species metabolic process;mitochondrion;chloroplast;chloroplast stroma","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:0387987819];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS07T0106000-02",1.6995421636094302E-4,0.0203625145814099,-1.6062889496261699,"OS07G0106000",null,379.386600711705,400.4805689196,143.453917010079,112.687308172291,"down","OS07G0106000","Os07g0106000 protein [Source:UniProtKB/TrEMBL;Acc:Q7XAL0]","Metallophosphoesterase domain containing protein. (Os07t0106000-01);Similar to predicted protein. (Os07t0106000-02)",7,335232,343705,"GO:0016020;GO:0016021;GO:0016787","membrane;integral component of membrane;hydrolase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS05T0313500-01",1.7168647558153102E-4,0.0204787296215529,-0.607797365560041,"OS05G0313500",null,2062.96993291854,2032.92727023565,1363.05997824551,1324.65870390622,"down","OS05G0313500","Os05g0313500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WKK9]","Similar to oxidoreductase/ zinc ion binding protein. (Os05t0313500-01)",5,14408019,14413939,"GO:0016491;GO:0055114;GO:0008270;GO:0016020;GO:0016021;GO:0005777","oxidoreductase activity;oxidation-reduction process;zinc ion binding;membrane;integral component of membrane;peroxisome","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS01T0860601-01",0.000173657011072042,0.0205642209390428,-0.674821402525271,"OS01G0860601",null,2339.83367643018,2229.53088001252,1485.46167144429,1376.83288596122,"down","OS01G0860601","Ferredoxin [Source:UniProtKB/TrEMBL;Acc:Q5N7C3]","Similar to Ferredoxin, root R-B1. (Os01t0860601-01)",1,37241157,37242066,"GO:0022900;GO:0051537;GO:0051536;GO:0009536;GO:0009507;GO:0009055;GO:0055114;GO:0046872","electron transport chain;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;plastid;chloroplast;electron carrier activity;oxidation-reduction process;metal ion binding","A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS03T0699800-01",0.000174740792854572,0.0205966166211332,-0.7491533811080111,"OS03G0699800",null,1006.90651191772,981.920458860698,602.010026182879,581.247735121093,"down","OS03G0699800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7G787]","Conserved hypothetical protein. (Os03t0699800-01)",3,28054566,28055167]
["OS01T0819100-01",0.000175955088663903,0.0205968577350941,-0.84001129409965,"OS01G0819100",null,780.748502280434,743.176450182349,430.285934435412,421.038275356623,"down","OS01G0819100","Os01g0819100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDZ0]","Similar to predicted protein. (Os01t0819100-01)",1,34899988,34901713,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0320100-01",0.00017815579749253,0.0207748699427168,-1.54730602150178,"OS10G0320100","CYP75B3",447.664849361092,380.787605538662,152.432919003803,131.020737869897,"down","OS10G0320100","Flavonoid 3'-monooxygenase CYP75B3 [Source:UniProtKB/Swiss-Prot;Acc:Q7G602]","Similar to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2). (Os10t0320100-01)",10,8679311,8681266,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0009813;GO:0016021;GO:0016711","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;flavonoid biosynthetic process;integral component of membrane;flavonoid 3'-monooxygenase activity","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: a flavonoid + NADPH + H+ + O2 = 3'-hydroxyflavonoid + NADP+ + H2O. [EC:1.14.13.21]"]
["OS04T0110600-01",1.79173515611388E-4,0.0208141036082096,-0.626808188301048,"OS04G0110600",null,1820.38750009511,1903.23165704593,1210.84998783299,1200.59406128374,"down","OS04G0110600","Os04g0110600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JFE3]","Zinc finger, RanBP2-type domain containing protein. (Os04t0110600-01)",4,617514,622710,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS04T0627300-00",1.8285968562710701E-4,0.0208395696433683,-1.4330876182068,"OS04G0627300",null,1271.00963752441,1528.55544116453,553.22477284553,483.559040142758,"down","OS04G0627300","Os04g0627300 protein [Source:UniProtKB/TrEMBL;Acc:B9FCM8]","Similar to H0303G06.2 protein. (Os04t0627300-00)",4,31932864,31933709]
["OS07T0168800-01",1.9061689739850802E-4,0.0214107626813206,-0.763143760191021,"OS07G0168800","SAP9",2442.13239094507,2744.19448225228,1498.68298252334,1557.15779795466,"down","OS07G0168800","Zinc finger A20 and AN1 domain-containing stress-associated protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1W9]","Zinc finger, AN1-type domain containing protein. (Os07t0168800-01)",7,3675982,3678406,"GO:0046872;GO:0003677;GO:0008270","metal ion binding;DNA binding;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS11T0599200-01",1.9279181134629803E-4,0.0215757341401175,-0.8208222636360951,"OS11G0599200",null,1258.7785904913,1271.22287531191,669.333675788419,762.948707780796,"down","OS11G0599200","NA","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os11t0599200-01)","NA","NA","NA","NA","NA","NA"]
["OS12T0143900-01",0.000193749161013877,0.0216037385667736,-0.6216311685052041,"OS12G0143900",null,1667.32334251656,1715.0022920921,1110.48575381472,1087.80832020708,"down","OS12G0143900","AMP-binding enzyme family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QXT1]","Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os12t0143900-01)",12,2161664,2170063,"GO:0008152;GO:0003824","metabolic process;catalytic activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0719300-01",1.99642386770446E-4,0.0220995442051112,-1.27125769499208,"OS01G0719300",null,334.315285571779,327.327023764525,141.47723467831,132.640144177645,"down","OS01G0719300","Os01g0719300 protein [Source:UniProtKB/TrEMBL;Acc:Q942E2]","Similar to Sulfate transporter 3.1 (AST12) (AtST1). (Os01t0719300-01)",1,29987911,29994075,"GO:0015116;GO:0005887;GO:1902358;GO:0008271;GO:0008272;GO:0006810;GO:0055085;GO:0016021;GO:0016020","sulfate transmembrane transporter activity;integral component of plasma membrane;sulfate transmembrane transport;secondary active sulfate transmembrane transporter activity;sulfate transport;transport;transmembrane transport;integral component of membrane;membrane","Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other. [GOC:ai];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of sulfate across a membrane. [GOC:dph, GOC:TermGenie, PMID:9055073];Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0501000-01",2.0091594453649302E-4,0.0221602308212236,-0.772504769527651,"OS11G0501000",null,904.078226530999,855.373448894089,522.002210709627,507.981213887341,"down","OS11G0501000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R3V6]","Conserved hypothetical protein. (Os11t0501000-01)",11,17829546,17831391,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0531400-02",2.0476315788350302E-4,0.02234258571306,-6.6358844562607,"OS07G0531400",null,153.260551228001,235.223497349351,0.9757050667469671,2.93066084935005,"down","OS07G0531400","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q8GVN8]","Similar to Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27) (PRXR7) (ATP12a). (Os07t0531400-01);Plant peroxidase domain containing protein. (Os07t0531400-02)",7,20803306,20805360,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0006979;GO:0020037;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;response to oxidative stress;heme binding;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS09T0330000-00",2.0440897207187801E-4,0.02234258571306,-1.59911750096034,"OS09G0330000",null,241.37223070703,285.124482964696,82.9349306734922,90.8504863298514,"down","OS09G0330000","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XK72]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os09t0330000-00)",9,9825477,9832295,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0563000-06",2.0899365420213803E-4,0.022723039584283698,-0.910188060713877,"OS01G0563000",null,1769.3616037732,1664.60401328666,937.306112334494,889.96098619944,"down","OS01G0563000","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:Q657L8]","Hypothetical conserved gene. (Os01t0563000-01);Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein. (Os01t0563000-02);Hypothetical conserved gene. (Os01t0563000-03);Hypothetical conserved gene. (Os01t0563000-04);Hypothetical conserved gene. (Os01t0563000-05);Hypothetical conserved gene. (Os01t0563000-06)",1,21415022,21441440,"GO:0000413;GO:0016853;GO:0003755;GO:0061077;GO:0005528;GO:0005737","protein peptidyl-prolyl isomerization;isomerase activity;peptidyl-prolyl cis-trans isomerase activity;chaperone-mediated protein folding;FK506 binding;cytoplasm","The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). [EC:5.2.1.8];The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0286600-02",2.1212678382263102E-4,0.0229819060260604,-1.45743780175173,"OS09G0286600",null,364.092779362707,371.499740244929,136.837696956996,131.020418518063,"down","OS09G0286600","AP2/ERF domain protein [Source:UniProtKB/TrEMBL;Acc:Q6EN68]","Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os09t0286600-01);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os09t0286600-02);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os09t0286600-03)",9,6387891,6389789,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0348766-01",0.000216176112531695,0.0232202694064149,-3.27327351146892,"OS09G0348766",null,100.080908908367,105.40937138661,10.4499182878835,10.8039396584282,"down","OS09G0348766","Os09g0348766 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKH8]","Hypothetical gene. (Os09t0348766-01)",9,10964864,10969484]
["OS06T0490400-00",2.18554228258933E-4,0.0233470936425417,-3.17418557187352,"OS06G0490400",null,150.240952567652,141.566766758588,12.1743604019976,20.1531088545897,"down","OS06G0490400","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q656D4]","Similar to Class III peroxidase 80. (Os06t0490400-00)",6,16896478,16897774,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0429000-01",0.000219382078562675,0.02335387200086,-1.00199223543082,"OS03G0429000",null,544.281592973566,492.019865910198,259.537547754693,257.898154742804,"down","OS03G0429000","Cysteine proteinase inhibitor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q10J94]","Proteinase inhibitor I25, cystatin domain containing protein. (Os03t0429000-01)",3,17949269,17950045,"GO:0006952;GO:0010951;GO:0010466;GO:0030414;GO:0004869;GO:0005576;GO:0002020;GO:2000117","defense response;negative regulation of endopeptidase activity;negative regulation of peptidase activity;peptidase inhibitor activity;cysteine-type endopeptidase inhibitor activity;extracellular region;protease binding;negative regulation of cysteine-type endopeptidase activity","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. [GOC:jl];Stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:dph, GOC:tb];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Interacting selectively and non-covalently with any protease or peptidase. [GOC:hjd];Any process that stops, prevents, or reduces the frequency, rate or extent of cysteine-type endopeptidase activity. [GOC:obol, GOC:yaf]"]
["OS02T0514326-00",0.000220997571054906,0.0233630373386488,-1.75395713552947,"OS02G0514326",null,200.053901723143,192.092126898695,57.6686403300586,58.597729360981,"down","OS02G0514326","Os02g0514326 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KFD1]","Hypothetical protein. (Os02t0514326-00)",2,18537130,18540652]
["OS02T0542400-01",2.2278360981738902E-4,0.0233899822925803,-0.957782586208144,"OS02G0542400",null,502.492182277094,529.075755392974,269.294598422163,261.805702541937,"down","OS02G0542400","Os02g0542400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESZ1]","Conserved hypothetical protein. (Os02t0542400-01)",2,20147866,20150003]
["OS02T0625300-00",2.2247413537634803E-4,0.0233899822925803,-0.9862555199819841,"OS02G0625300",null,1250.62455913589,1244.46028846324,577.617399514204,681.867090948778,"down","OS02G0625300","Os02g0625300 protein [Source:UniProtKB/TrEMBL;Acc:Q2ABR6]","Similar to PEPC kinase. (Os02t0625300-00)",2,24934934,24936452,"GO:0046777;GO:0009931;GO:0005516;GO:0004683;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","protein autophosphorylation;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS08T0478700-01",0.000228961096674063,0.023956230909541004,-0.826795565246601,"OS08G0478700",null,1006.00361847361,938.749200230336,521.02650564288,575.386413422392,"down","OS08G0478700","Os08g0478700 protein [Source:UniProtKB/TrEMBL;Acc:B9G1F6]","Similar to Mitochondrial uncoupling protein 4. (Os08t0478700-01)",8,23613110,23614397,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0231700-01",2.4640387390095704E-4,0.0249275866073577,-0.691810925090662,"OS05G0231700",null,1763.08789189841,1618.10717408124,1013.7575643501,1079.4600795106,"down","OS05G0231700","Os05g0231700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJN9]","Similar to Tonoplast intrinsic protein. (Os05t0231700-01)",5,8000718,8002989,"GO:0042807;GO:0005774;GO:0034220;GO:0006833;GO:0015250;GO:0005773;GO:0009705;GO:0005887;GO:0006810;GO:0005215;GO:0016020;GO:0016021","central vacuole;vacuolar membrane;ion transmembrane transport;water transport;water channel activity;vacuole;plant-type vacuole membrane;integral component of plasma membrane;transport;transporter activity;membrane;integral component of membrane","A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination. [ISBN:9780815341116, Wikipedia:Vacuole];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0471245208];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0591600-01",0.000248671490126226,0.0250420896970333,-0.611503975472178,"OS06G0591600",null,2186.2996571691,2067.92449919161,1347.44869717756,1437.00070313131,"down","OS06G0591600","Two-on-two hemoglobin-3 [Source:Projected from Arabidopsis thaliana (AT4G32690) UniProtKB/Swiss-Prot;Acc:Q67XG0]","Similar to Hemoglobin Hb2. (Os06t0591600-01)",6,23241327,23243257,"GO:0019825;GO:0005344;GO:0001666;GO:0015671","oxygen binding;oxygen transporter activity;response to hypoxia;oxygen transport","Interacting selectively and non-covalently with oxygen (O2). [GOC:jl];Enables the directed movement of oxygen into, out of or within a cell, or between cells. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd];The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS01T0784500-01",2.56216807766739E-4,0.0251702119321203,-0.6460098632887441,"OS01G0784500",null,1367.8387598699,1348.4226450677,900.57577660745,835.238342064763,"down","OS01G0784500","Os01g0784500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V932]","Conserved hypothetical protein. (Os01t0784500-01)",1,33240486,33243618,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0640600-02",0.000255064386725069,0.0251702119321203,-0.988719736238687,"OS04G0640600",null,706.778973798672,789.585345003196,355.591802757741,398.463235182135,"down","OS04G0640600","Os04g0640600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFI9]","Shikimate kinase. (Os04t0640600-01);Similar to OSIGBa0138H21-OSIGBa0138E01.13 protein. (Os04t0640600-02)",4,32582187,32585691]
["OS06T0164400-01",2.51434944922018E-4,0.0251702119321203,-1.01044344451987,"OS06G0164400",null,429.046419926533,434.377371159212,210.752294417345,217.845789801687,"down","OS06G0164400","Os06g0164400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WTF9]","Similar to predicted protein. (Os06t0164400-01)",6,3273390,3276888,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS01T0143900-01",0.000258738282444017,0.0252151244282688,-0.715574540843807,"OS01G0143900",null,1113.90947684656,1145.69325341978,661.37301869221,714.640465880823,"down","OS01G0143900","Os01g0143900 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZBM5]","Conserved hypothetical protein. (Os01t0143900-01)",1,2377369,2377984]
["OS01T0831200-01",0.00025976308868246,0.0252151244282688,-0.65004541640096,"OS01G0831200",null,1650.17209555094,1763.24274122211,1048.88294675299,1126.3506531002,"down","OS01G0831200","BAG family molecular chaperone regulator 4 [Source:Projected from Arabidopsis thaliana (AT3G51780) UniProtKB/Swiss-Prot;Acc:Q8RX71]","Ubiquitin domain containing protein. (Os01t0831200-01)",1,35582280,35585575,"GO:0051087;GO:0009409;GO:0009651;GO:0010228;GO:0005829","chaperone binding;response to cold;response to salt stress;vegetative to reproductive phase transition of meristem;cytosol","Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0906000-01",0.000258062345962778,0.0252151244282688,-0.9531647328996631,"OS01G0906000",null,649.26474667446,751.411092289633,352.229529095655,371.217040917673,"down","OS01G0906000","Os01g0906000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JGT3]","Similar to Ceramide glucosyltransferase. (Os01t0906000-01)",1,39437968,39438606,"GO:0006679;GO:0008120;GO:0016020;GO:0016757;GO:0016021;GO:0016740","glucosylceramide biosynthetic process;ceramide glucosyltransferase activity;membrane;transferase activity, transferring glycosyl groups;integral component of membrane;transferase activity","The chemical reactions and pathways resulting in the formation of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. [GOC:ai];Catalysis of the reaction: UDP-glucose + N-acylsphingosine = UDP + D-glucosyl-N-acylsphingosine. [EC:2.4.1.80];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0131400-00",2.62602405756685E-4,0.0253893313312602,-0.6784568805667041,"OS02G0131400",null,1049.79509384747,992.427506546804,634.567590960476,641.480982115111,"down","OS02G0131400","Os02g0131400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZG89]","Beta-D-glucan exohydrolase, isoenzyme ExoII (EC 3.2.1.58). (Os02t0131400-00)",2,1644223,1648808,"GO:0008422;GO:0005886;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0009251","beta-glucosidase activity;plasma membrane;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;glucan catabolic process","Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glucans, polysaccharides consisting only of glucose residues. [GOC:go_curators]"]
["OS01T0719700-00",0.000265995157929026,0.0254064204195132,-1.7322203237095,"OS01G0719700",null,251.75571809826,319.092381657241,93.6676864077088,78.1509559826679,"down","OS01G0719700","Os01g0719700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7H1]","Similar to HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding. (Os01t0719700-00)",1,30011021,30011903,"GO:0051536;GO:0009570;GO:0009536;GO:0009507;GO:0046872;GO:0005524;GO:0000166","iron-sulfur cluster binding;chloroplast stroma;plastid;chloroplast;metal ion binding;ATP binding;nucleotide binding","Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS02T0574000-01",2.6430975237555704E-4,0.0254064204195132,-2.08467721322991,"OS02G0574000",null,124.563286195606,139.654743982139,30.9735263641207,31.315576802953,"down","OS02G0574000","Os02g0574000 protein [Source:UniProtKB/TrEMBL;Acc:Q0E070]","Similar to Monosaccharide transporter 1. (Os02t0574000-01)",2,22010746,22012100,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0022891;GO:0022857;GO:0055085;GO:0016021;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;substrate-specific transmembrane transporter activity;transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0577100-01",2.68085476263842E-4,0.0254064204195132,-0.865241557565636,"OS02G0577100",null,1354.58845891736,1565.6113306473,818.616551000705,784.440220676029,"down","OS02G0577100","Os02g0577100 protein [Source:UniProtKB/TrEMBL;Acc:Q69JV9]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0577100-01)",2,22163299,22167298,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0480900-01",2.66046102069181E-4,0.0254064204195132,-1.95628640920525,"OS04G0480900",null,1014.84590466779,921.432339184325,208.482376056765,290.4789398928,"down","OS04G0480900","OSJNBb0011N17.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUQ7]","Glycoside hydrolase, family 5 protein. (Os04t0480900-01)",4,24054885,24058958,"GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787","metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS08T0245200-01",0.000267053006177205,0.0254064204195132,-0.6748463651665441,"OS08G0245200","4CL1",1545.1332041227,1642.65061839699,953.301013162045,1043.52333668515,"down","OS08G0245200","Probable 4-coumarate--CoA ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:P17814]","4-coumarate:coenzyme A ligase, Lignin biosynthesis (Os08t0245200-01)",8,8874179,8878862,"GO:0016207;GO:0009698;GO:0016874;GO:0005524;GO:0000166;GO:0008152;GO:0003824","4-coumarate-CoA ligase activity;phenylpropanoid metabolic process;ligase activity;ATP binding;nucleotide binding;metabolic process;catalytic activity","Catalysis of the reaction: ATP + 4-coumarate + CoA = AMP + diphosphate + 4-coumaroyl-CoA. [EC:6.2.1.12];The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. [GOC:jl];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS09T0286600-03",2.68600215877938E-4,0.0254064204195132,-1.62645592220227,"OS09G0286600",null,1906.15086211695,1519.37995364008,507.293397741736,602.177358707114,"down","OS09G0286600","AP2/ERF domain protein [Source:UniProtKB/TrEMBL;Acc:Q6EN68]","Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os09t0286600-01);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os09t0286600-02);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os09t0286600-03)",9,6387891,6389789,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0150800-01",0.000271558604160666,0.0254171115091066,-2.93621177407236,"OS03G0150800","PTH1-2",5041.49638946876,4188.47745233646,458.540143360675,747.363625827431,"down","OS03G0150800","Inorganic phosphate transporter 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GSD9]","Pi transporter, Pi homeostasis, Selenite uptake (Os03t0150800-01)",3,2815502,2817322,"GO:0022891;GO:0005887;GO:0005315;GO:0022857;GO:0006810;GO:0055085;GO:0016021;GO:0015293;GO:0016020;GO:0006817","substrate-specific transmembrane transporter activity;integral component of plasma membrane;inorganic phosphate transmembrane transporter activity;transmembrane transporter activity;transport;transmembrane transport;integral component of membrane;symporter activity;membrane;phosphate ion transport","Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]"]
["OS08T0189300-01",0.000272832264251743,0.0254171115091066,-2.64980057870715,"OS08G0189300","GER1",9611.56446018863,8790.48044952529,1131.81787742648,1800.40264845071,"down","OS08G0189300","Germin-like protein 8-4 [Source:UniProtKB/Swiss-Prot;Acc:Q6YZZ6]","Germin-like protein 8-4, Disease resistance (Os08t0189300-01)",8,5228827,5229949,"GO:0005618;GO:0045735;GO:0030145;GO:0048046;GO:0046872;GO:0005576","cell wall;nutrient reservoir activity;manganese ion binding;apoplast;metal ion binding;extracellular region","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Functions in the storage of nutritious substrates. [GOC:ai];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS10T0100500-01",2.7379768485113104E-4,0.0254171115091066,-0.99964952976744,"OS10G0100500",null,532.968726890569,583.793820793434,278.289270220275,280.227666240122,"down","OS10G0100500","Os10g0100500 protein [Source:UniProtKB/TrEMBL;Acc:Q33BK6]","Serine/threonine protein kinase-related domain containing protein. (Os10t0100500-01);Similar to predicted protein. (Os10t0100500-02)",10,67119,72969,"GO:0016567;GO:0004842;GO:0006468;GO:0005524;GO:0004672;GO:0006950","protein ubiquitination;ubiquitin-protein transferase activity;protein phosphorylation;ATP binding;protein kinase activity;response to stress","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS11T0170900-01",2.7237801502371403E-4,0.0254171115091066,-2.14528183612815,"OS11G0170900",null,298.641398391863,211.012703999143,53.6637786710832,61.543877836351,"down","OS11G0170900","Os11g0170900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZM0]","Similar to BURP domain-containing protein 17. (Os11t0170900-01)",11,3463917,3467995]
["OS08T0118900-01",2.7606318882779997E-4,0.0254238117081418,-0.946971088002941,"OS08G0118900",null,569.76294095922,642.302084368124,323.934082159993,304.788728332405,"down","OS08G0118900","Probable adenylate kinase 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6ZJ48]","Adenylate kinase family protein. (Os08t0118900-01)",8,1046937,1049979,"GO:0004017;GO:0019205;GO:0046939;GO:0016310;GO:0016301;GO:0005739;GO:0006139;GO:0005524;GO:0000166;GO:0016740","adenylate kinase activity;nucleobase-containing compound kinase activity;nucleotide phosphorylation;phosphorylation;kinase activity;mitochondrion;nucleobase-containing compound metabolic process;ATP binding;nucleotide binding;transferase activity","Catalysis of the reaction: ATP + AMP = 2 ADP. [EC:2.7.4.3];Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. [GOC:jl];The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. [GOC:ai];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0816100-01",2.8243212080466504E-4,0.0255430851756435,-0.546737239289064,"OS03G0816100",null,2685.73407768792,2531.12311772631,1788.46738734719,1782.81868335461,"down","OS03G0816100","Os03g0816100 protein [Source:UniProtKB/TrEMBL;Acc:Q10BI9]","Similar to Protein kinase. (Os03t0816100-01)",3,34202464,34206271,"GO:0004871;GO:0004672;GO:0006468;GO:0007166;GO:0005622;GO:0035556;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166","signal transducer activity;protein kinase activity;protein phosphorylation;cell surface receptor signaling pathway;intracellular;intracellular signal transduction;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS08T0246100-01",0.000281066709600979,0.0255430851756435,-0.7710790985510061,"OS08G0246100",null,900.001210853294,846.109476523395,489.803943506977,533.380274581708,"down","OS08G0246100","Os08g0246100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDJ1]","Hypothetical conserved gene. (Os08t0246100-01)",8,8922657,8926442,"GO:0005886;GO:0007165;GO:0006952;GO:0015074;GO:0043531;GO:0003676;GO:0008270","plasma membrane;signal transduction;defense response;DNA integration;ADP binding;nucleic acid binding;zinc ion binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0776600-03",0.0002867784494166,0.0256940034796949,-0.9729252751270571,"OS01G0776600",null,883.620708942454,820.004312659444,407.718621687119,460.230601292493,"down","OS01G0776600","Purple acid phosphatase 10 [Source:Projected from Arabidopsis thaliana (AT2G16430) UniProtKB/Swiss-Prot;Acc:Q9SIV9]","Similar to Purple acid phosphatase (EC 3.1.3.2). (Os01t0776600-01);Similar to predicted protein. (Os01t0776600-02);Similar to predicted protein. (Os01t0776600-03)",1,32848286,32852539,"GO:0016787;GO:0003993;GO:0016311;GO:0046872;GO:0016036;GO:0005618;GO:0005829;GO:0009505;GO:0009506","hydrolase activity;acid phosphatase activity;dephosphorylation;metal ion binding;cellular response to phosphate starvation;cell wall;cytosol;plant-type cell wall;plasmodesma","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS04T0628200-01",2.8921323359584105E-4,0.0257610574717788,-0.569905186948179,"OS04G0628200",null,1498.3375968575,1525.5338821747,1021.77349626856,1015.29096832527,"down","OS04G0628200","Pentatricopeptide repeat-containing protein At3g20730 [Source:Projected from Arabidopsis thaliana (AT3G20730) UniProtKB/Swiss-Prot;Acc:Q9LT48]","Similar to H0303G06.9 protein. (Os04t0628200-01)",4,31965780,31973005,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS07T0174900-00",2.9349805207712804E-4,0.025991166629160598,-1.8239161610683499,"OS07G0174900",null,153.907341833349,189.396768467524,46.5740120476493,50.3933384157404,"down","OS07G0174900","Os07g0174900 protein [Source:UniProtKB/TrEMBL;Acc:Q8H574]","Plant lipid transfer protein and hydrophobic protein, helical domain containing protein. (Os07t0174900-00)",7,3947968,3949371,"GO:0006869;GO:0008289;GO:0006508;GO:0008233","lipid transport;lipid binding;proteolysis;peptidase activity","The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [ISBN:0198506732];Interacting selectively and non-covalently with a lipid. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS07T0573300-02",0.00029707592446178,0.0262319758501627,-0.6632073646877761,"OS07G0573300",null,1151.56185643109,1234.9993150852,735.494882515395,771.553726319318,"down","OS07G0573300","Os07g0573300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZL20]","FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68) (1- phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5- kinase) (PIKfyve) (p235). Splice isoform p235S. (Os07t0573300-01);Similar to FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68) (1- phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5- kinase) (PIKfyve) (p235). (Os07t0573300-02)",7,23169765,23173649,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS11T0569600-01",0.000303257227168404,0.0266238931162329,-1.1564932571325799,"OS11G0569600",null,321.003557941767,346.767284973696,147.138069389354,152.425014073906,"down","OS11G0569600","NA","Similar to Receptor kinase-like protein. (Os11t0569600-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0588100-00",0.000306008972842222,0.0267884989635403,-1.15536579979572,"OS01G0588100",null,1422.87847151891,1341.21733322382,558.103298179265,682.843977898561,"down","OS01G0588100","Os01g0588100 protein [Source:UniProtKB/TrEMBL;Acc:Q8S1F1]","Similar to Hypersensitive-induced response protein. (Os01t0588100-00)",1,22906348,22907811]
["OS08T0433200-01",3.1311740475469603E-4,0.0271771674717769,-0.644850442288437,"OS08G0433200",null,904.078226530999,910.957283118254,574.690284313964,586.132169870009,"down","OS08G0433200","Os08g0433200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZA96]","Conserved hypothetical protein. (Os08t0433200-01)",8,21010736,21013557]
["OS11T0525200-01",3.13053837154122E-4,0.0271771674717769,-0.741087995959526,"OS11G0525200",null,2757.23652482151,2978.76162702619,1734.04430512222,1697.73449081006,"down","OS11G0525200","Sterol 14-demethylase [Source:Projected from Arabidopsis thaliana (AT1G11680) UniProtKB/Swiss-Prot;Acc:Q9SAA9]","Similar to Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1) (Obtusifoliol 14-alpha demethylase) (Fragment). (Os11t0525200-01);Similar to Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1) (Obtusifoliol 14-alpha demethylase) (Fragment). (Os11t0525200-02)",11,19048566,19052876,"GO:0016126;GO:0005783;GO:0005886;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0070988;GO:0008398;GO:0005794;GO:0032259;GO:0008168","sterol biosynthetic process;endoplasmic reticulum;plasma membrane;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;demethylation;sterol 14-demethylase activity;Golgi apparatus;methylation;methyltransferase activity","The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The process of removing one or more methyl groups from a molecule. [GOC:BHF, GOC:rl];Catalysis of the reaction: obtusifoliol + 3 O2 + 3 NADPH + 3 H+ = 4-alpha-methyl-5-alpha-ergosta-8,14,24(28)-trien-3-beta-ol + formate + 3 NADP+ + 3 H2O. [EC:1.14.13.70];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732]"]
["OS06T0509900-00",3.1698834011450804E-4,0.0274352061393158,-2.12166929854683,"OS06G0509900",null,146.772564397366,205.866052682091,42.9310229368665,38.0985910415506,"down","OS06G0509900","Os06g0509900 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z4W6]","Similar to Thionin. (Os06t0509900-00)",6,18201961,18202883,"GO:0006952","defense response","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS01T0227100-02",3.18073754069022E-4,0.0274513823003298,-1.57724146911311,"OS01G0227100","NYC1",710.506448110829,824.633783932548,288.969227068855,225.490118529554,"down","OS01G0227100","Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5N800]","Chlorophyll b reductase, Leaf senescence (Os01t0227100-01);Similar to oxidoreductase. (Os01t0227100-02)",1,7024297,7030591,"GO:0009536;GO:0009579;GO:0009535;GO:0009507;GO:0055114;GO:0016491;GO:0016020;GO:0016021;GO:0034256;GO:0010304;GO:0015996;GO:0042170","plastid;thylakoid;chloroplast thylakoid membrane;chloroplast;oxidation-reduction process;oxidoreductase activity;membrane;integral component of membrane;chlorophyll(ide) b reductase activity;PSII associated light-harvesting complex II catabolic process;chlorophyll catabolic process;plastid membrane","Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: 71-hydroxychlorophyll(ide) a + NAD(P)+ = chlorophyll(ide) b + NAD(P)H + H+. [EC:1.1.1.294, MetaCyc:RXN-7678];The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. [GOC:mah, PMID:16157880];The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl];Either of the lipid bilayers that surround a plastid and form the plastid envelope. [GOC:mah]"]
["OS01T0895300-01",3.2092998987383705E-4,0.0275422838500715,-2.29133315831932,"OS01G0895300",null,195.696752529822,191.455428994345,31.2225621359029,47.8674605393841,"down","OS01G0895300","Os01g0895300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KE83]","Cytochrome b561, eukaryote domain containing protein. (Os01t0895300-01)",1,38924933,38926377,"GO:0006508;GO:0004252;GO:0055114;GO:0016021;GO:0016020","proteolysis;serine-type endopeptidase activity;oxidation-reduction process;integral component of membrane;membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0449900-01",0.000328455490424359,0.0279525686446937,-0.8992934713638651,"OS05G0449900",null,603.45501997903,578.824497591638,296.752050141986,337.126208116104,"down","OS05G0449900","Os05g0449900 protein [Source:UniProtKB/TrEMBL;Acc:Q60EH1]","Homeodomain-like containing protein. (Os05t0449900-01)",5,22081376,22083466,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS11T0658900-01",3.27697579976381E-4,0.0279525686446937,-4.03289270697436,"OS11G0658900",null,77.4632978763877,82.3464210728365,4.87852533373483,4.88443474891674,"down","OS11G0658900","Os11g0658900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y4X6]","Similar to Lipase family protein. (Os11t0658900-01)",11,26434011,26438037,"GO:0016042","lipid catabolic process","The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]"]
["OS02T0530100-02",0.00033328757500383,0.0282337944467615,-1.08881932151038,"OS02G0530100",null,953.747726657778,786.253596817277,419.523936884784,398.530685563102,"down","OS02G0530100","Os02g0530100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJT1]","Similar to C4-dicarboxylate transporter/malic acid transport protein. (Os02t0530100-01);Copper chaperone homolog CCH. (Os02t0530100-02)",2,19472233,19486248,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872;GO:0006873;GO:0008308;GO:1903959;GO:0005623;GO:0016021","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding;cellular ion homeostasis;voltage-gated anion channel activity;regulation of anion transmembrane transport;cell;integral component of membrane","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process involved in the maintenance of an internal steady state of ions at the level of a cell. [GOC:mah];Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, GOC:vw, ISBN:0815340729];Any process that modulates the frequency, rate or extent of anion transmembrane transport. [GO_REF:0000058, GOC:TermGenie, GOC:vw];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0434500-01",3.3360826771670904E-4,0.0282337944467615,-0.8745135610420671,"OS07G0434500",null,722.036346706194,787.12705119534,406.809259511521,416.345417520613,"down","OS07G0434500","Os07g0434500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X5H1]","Similar to chromatin remodeling complex subunit. (Os07t0434500-01)",7,14506007,14510037,"GO:0005524","ATP binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS02T0695600-01",3.35722082632082E-4,0.0283342018468933,-0.8412492960806831,"OS02G0695600",null,524.915768504469,545.545039607542,302.46857069156,295.019858834571,"down","OS02G0695600","Os02g0695600 protein [Source:UniProtKB/TrEMBL;Acc:Q6YUQ1]","Conserved hypothetical protein. (Os02t0695600-01)",2,28578290,28579120,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0508200-01",0.000345824653677848,0.0289469447100428,-0.767406289338165,"OS04G0508200",null,1482.57670752772,1709.01297913815,934.611540093076,940.360263543318,"down","OS04G0508200","Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:Q0JBV4]","Isocitrate/isopropylmalate dehydrogenase domain containing protein. (Os04t0508200-01)",4,25389649,25395401,"GO:0006102;GO:0004450;GO:0006099;GO:0051287;GO:0016616;GO:0000287;GO:0055114;GO:0046872;GO:0016491;GO:0005739;GO:0009507;GO:0009534;GO:0009570","isocitrate metabolic process;isocitrate dehydrogenase (NADP+) activity;tricarboxylic acid cycle;NAD binding;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;magnesium ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;mitochondrion;chloroplast;chloroplast thylakoid;chloroplast stroma","The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. [EC:1.1.1.42];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS02T0807800-01",0.000350162162329996,0.029150284423722198,-1.22256449861567,"OS02G0807800",null,807.844733134823,1008.07666837099,379.531522792515,398.627686041823,"down","OS02G0807800","Os02g0807800 protein [Source:UniProtKB/TrEMBL;Acc:Q6K9B1]","Hypothetical conserved gene. (Os02t0807800-01)",2,34509523,34512673,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0771600-02",3.5701546981843304E-4,0.0293213350373462,-1.11105324441147,"OS02G0771600",null,820.617687882692,977.731085623353,439.574825187186,392.981394720456,"down","OS02G0771600","1-aminocyclopropane-1-carboxylate oxidase [Source:UniProtKB/TrEMBL;Acc:Q6ZHG2]","Similar to 1-aminocyclopropane-1-carboxylate oxidase (Fragment). (Os02t0771600-01);ACC oxidase, Ethylene biosynthesis (Os02t0771600-02)",2,32558636,32562547,"GO:0009693;GO:0055114;GO:0046872;GO:0016491","ethylene biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity","The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:0387969845];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS02T0797600-03",3.5438905030379605E-4,0.0293213350373462,-0.59073502466821,"OS02G0797600",null,6428.43446982075,6832.69428851861,4205.28883767943,4600.16064652979,"down","OS02G0797600","Os02g0797600 protein [Source:UniProtKB/TrEMBL;Acc:Q6KAJ1]","Conserved hypothetical protein. (Os02t0797600-03)",2,33953313,33954803]
["OS03T0794000-01",0.00035564176913558,0.0293213350373462,-1.92688869807299,"OS03G0794000",null,250.736464178834,291.300464545159,59.518009071565,83.0353907315847,"down","OS03G0794000","Os03g0794000 protein [Source:UniProtKB/TrEMBL;Acc:Q852L5]","Plant lipid transfer protein/Par allergen family protein. (Os03t0794000-01)",3,33028009,33029105,"GO:0006869;GO:0008289;GO:0006508;GO:0008233","lipid transport;lipid binding;proteolysis;peptidase activity","The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [ISBN:0198506732];Interacting selectively and non-covalently with a lipid. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS05T0166300-01",3.5872608332306505E-4,0.0293828399401777,-1.27581577326032,"OS05G0166300",null,634.272480885584,728.384292101009,253.793481739298,308.972273637964,"down","OS05G0166300","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q60D69]","Serine/threonine protein kinase-related domain containing protein. (Os05t0166300-01)",5,3956610,3959179,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0569800-00",3.6021927676238704E-4,0.0294262549295306,-1.78457779845378,"OS09G0569800",null,307.481913797355,230.844319298658,82.8234443012694,73.4316182028838,"down","OS09G0569800","Os09g0569800 protein [Source:UniProtKB/TrEMBL;Acc:Q0IZH1]","Serine/threonine protein kinase-related domain containing protein. (Os09t0569800-00)",9,22736559,22741162,"GO:0016310;GO:0016301;GO:0006950;GO:0016567;GO:0004842;GO:0004674;GO:0006468;GO:0005524;GO:0004672","phosphorylation;kinase activity;response to stress;protein ubiquitination;ubiquitin-protein transferase activity;protein serine/threonine kinase activity;protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0801600-01",3.7137453884995505E-4,0.0302566264291835,-0.604035833661522,"OS01G0801600",null,1191.50783180917,1264.01756346804,800.078154732513,815.438819905775,"down","OS01G0801600","Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q8S2G5]","Similar to Glycerol-3-phosphate dehydrogenase. (Os01t0801600-01)",1,33952187,33956006,"GO:0005829;GO:0046168;GO:0004367;GO:0051287;GO:0009331;GO:0006072;GO:0005737;GO:0016616;GO:0055114;GO:0016491;GO:0005975","cytosol;glycerol-3-phosphate catabolic process;glycerol-3-phosphate dehydrogenase [NAD+] activity;NAD binding;glycerol-3-phosphate dehydrogenase complex;glycerol-3-phosphate metabolic process;cytoplasm;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:ai];Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+. [EC:1.1.1.8, EC:1.1.1.94];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate. [EC:1.1.5.3];The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:go_curators, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS12T0263600-01",3.7664922666282605E-4,0.030468596565062,-0.8741589740534391,"OS12G0263600",null,902.753905886379,1003.61451280661,488.241423462807,551.819459239144,"down","OS12G0263600","Os12g0263600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8U4]","Similar to Isoflavone reductase-like protein 1. (Os12t0263600-01)",12,9286790,9291494]
["OS01T0682500-01",3.7801838127287903E-4,0.0304728696164881,-0.573049821255961,"OS01G0682500",null,1385.16607650014,1320.63072795562,923.992698209378,894.828446001548,"down","OS01G0682500","D-glycerate 3-kinase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G80380) UniProtKB/Swiss-Prot;Acc:Q944I4]","Similar to Protein Kinase C630.09c. (Os01t0682500-01)",1,28126575,28130263,"GO:0043097;GO:0006222;GO:0006206;GO:0004849;GO:0005829;GO:0016310;GO:0016301;GO:0008887;GO:0009853;GO:0009507;GO:0009570;GO:0009941","pyrimidine nucleoside salvage;UMP biosynthetic process;pyrimidine nucleobase metabolic process;uridine kinase activity;cytosol;phosphorylation;kinase activity;glycerate kinase activity;photorespiration;chloroplast;chloroplast stroma;chloroplast envelope","Any process that generates a pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose, from derivatives of it, without de novo synthesis. [GOC:jl];The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate. [ISBN:0198506732];The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [CHEBI:26432, GOC:go_curators];Catalysis of the reaction: ATP + uridine = ADP + UMP. [EC:2.7.1.48];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reaction: D-glycerate + ATP = 3-phospho-D-glycerate + ADP + 2 H(+). [EC:2.7.1.31, RHEA:23519];A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS11T0240600-01",3.8115434432949203E-4,0.0306448092840912,"-Inf","OS11G0240600",null,64.2129969238477,42.2025407998287,0,0,"down","OS11G0240600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53M20]","Alpha/beta hydrolase fold-3 domain containing protein. (Os11t0240600-01);Similar to gibberellin receptor GID1L2. (Os11t0240600-02)",11,7494023,7495459,"GO:0016787;GO:0008152;GO:0009056","hydrolase activity;metabolic process;catabolic process","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684]"]
["OS02T0325600-02",3.8930096339502703E-4,0.0312176457575981,-1.38881519063307,"OS02G0325600","NIGT1",348.687622351586,326.297693501115,112.206082675901,145.556155517719,"down","OS02G0325600","Transcription factor NIGT1 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z869]","Nitrate-inducible and autorepressible transcriptional repressor, Nitrogen response (Os02t0325600-01);Similar to Phosphate starvation response regulator-like protein. (Os02t0325600-02)",2,13096088,13098218,"GO:0045892;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0043565","negative regulation of transcription, DNA-templated;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;sequence-specific DNA binding","Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl]"]
["OS01T0800500-01",0.000391538022909648,0.0312330800938266,-0.993167886081419,"OS01G0800500",null,371.00842667112,402.468132993488,187.335372815418,201.23871165537,"down","OS01G0800500","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q8S2H5]","Purple acid phosphatase, N-terminal domain containing protein. (Os01t0800500-01)",1,33897380,33904345,"GO:0003993;GO:0016311;GO:0046872;GO:0016787","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS02T0471500-03",0.000399990039860489,0.0314885152274687,-0.623674880387714,"OS02G0471500",null,1732.54303238701,1824.16600191399,1100.57016879766,1207.78957298289,"down","OS02G0471500","Probable protein phosphatase 2C 14 [Source:UniProtKB/Swiss-Prot;Acc:Q6K6N7]","Protein phosphatase 2C domain containing protein. (Os02t0471500-01);Protein phosphatase 2C domain containing protein. (Os02t0471500-02);Similar to protein phosphatase 2C containing protein. (Os02t0471500-03)",2,16009711,16014282,"GO:0006470;GO:0004722;GO:0003824;GO:0004721;GO:0046872;GO:0016787","protein dephosphorylation;protein serine/threonine phosphatase activity;catalytic activity;phosphoprotein phosphatase activity;metal ion binding;hydrolase activity","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0130400-01",4.0478288726064605E-4,0.0314885152274687,-0.8376122366586871,"OS03G0130400",null,2073.42262693564,2005.50723199802,1050.38319856339,1232.05921652694,"down","OS03G0130400","Probable adenylate kinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10S93]","Adenylate kinase, subfamily protein. (Os03t0130400-01);Similar to ESTs AU065232(E60855). (Os03t0130400-02);Non-protein coding transcript. (Os03t0130400-03)",3,1716495,1719628,"GO:0019205;GO:0016310;GO:0006139;GO:0005524;GO:0004017;GO:0016776;GO:0046939;GO:0016301;GO:0005739;GO:0009536;GO:0009507;GO:0000166;GO:0016740","nucleobase-containing compound kinase activity;phosphorylation;nucleobase-containing compound metabolic process;ATP binding;adenylate kinase activity;phosphotransferase activity, phosphate group as acceptor;nucleotide phosphorylation;kinase activity;mitochondrion;plastid;chloroplast;nucleotide binding;transferase activity","Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. [GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reaction: ATP + AMP = 2 ADP. [EC:2.7.4.3];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor). [GOC:jl];The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. [GOC:ai];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0568100-01",0.000400554909337542,0.0314885152274687,-0.617493084630477,"OS07G0568100",null,1137.48737407959,1133.29262001491,710.313288591792,769.786916429279,"down","OS07G0568100","Os07g0568100 protein [Source:UniProtKB/TrEMBL;Acc:Q7F1I0]","LRR protein kinase, Common symbiosis signaling (SYM) pathway (Os07t0568100-01)",7,22826946,22831523,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0668700-02",3.9693042856702603E-4,0.0314885152274687,-0.9789700401710031,"OS07G0668700",null,429.905600015193,478.625252699303,239.516803560559,221.418882725003,"down","OS07G0668700","Os07g0668700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9X0]","Lipase, class 3 family protein. (Os07t0668700-01);Lipase, class 3 family protein. (Os07t0668700-02)",7,28240466,28245410,"GO:0006629;GO:0016787","lipid metabolic process;hydrolase activity","The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS11T0286800-01",4.0234373756893203E-4,0.0314885152274687,-2.7325673924630998,"OS11G0286800",null,322.70626761159,474.286957149276,49.2489352194222,70.6650617663938,"down","OS11G0286800","Terpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:Q0IT98]","Squalene cyclase domain containing protein. (Os11t0286800-01);Similar to Cycloartenol synthase. (Os11t0286800-02);Similar to Cycloartenol synthase. (Os11t0286800-03);Similar to Cycloartenol synthase. (Os11t0286800-04)",11,10352224,10376610,"GO:0016853;GO:0016866","isomerase activity;intramolecular transferase activity","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Catalysis of the transfer of a functional group from one position to another within a single molecule. [GOC:mah]"]
["OS01T0860500-02",4.1066877439572104E-4,0.0315245035058746,-0.7282200238156371,"OS01G0860500",null,735.596433004428,686.949410644656,433.711775553872,425.005500795748,"down","OS01G0860500","Chitinase [Source:UniProtKB/TrEMBL;Acc:O49827]","Similar to Hevamine A precursor [Includes: Chitinase (EC 3.2.1.14); Lysozyme (EC 3.2.1.17)]. (Os01t0860500-02)",1,37239583,37240775,"GO:0004568;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0005576;GO:0008061;GO:0006032","chitinase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;extracellular region;chitin binding;chitin catabolic process","Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. [EC:3.2.1.14, GOC:bf, GOC:kah, GOC:pde, PMID:11468293];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:0198506732]"]
["OS03T0189100-01",4.2120132778462204E-4,0.0316108166166608,-0.83971905978932,"OS03G0189100",null,469.876056855457,445.700004056727,254.659022420958,256.921267793021,"down","OS03G0189100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8H7N4]","Uncharacterised protein family UPF0503 domain containing protein. (Os03t0189100-01)",3,4660862,4661923]
["OS03T0214400-01",0.000414964974440455,0.0316108166166608,-0.5701894299214071,"OS03G0214400",null,1167.04573774295,1165.20185818064,805.932385132995,764.902481680362,"down","OS03G0214400","Digalactosyldiacylglycerol synthase 2, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10Q06]","Similar to Digalactosyldiacylglycerol synthase 2. (Os03t0214400-01)",3,5994179,5997434,"GO:0009707;GO:0019375;GO:0035250","chloroplast outer membrane;galactolipid biosynthetic process;UDP-galactosyltransferase activity","The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope. [GOC:tb];The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:0198506732];Catalysis of the transfer of a galactose group from UDP-galactose to an acceptor molecule. [http://www.chem.qmul.ac.uk/iubmb/enzyme/reaction/polysacc/UDPsugar.html]"]
["OS06T0115800-01",0.000419495469234888,0.0316108166166608,-1.18514580745751,"OS06G0115800",null,332.31678042726,372.899695025705,143.856320774559,166.283843485638,"down","OS06G0115800","Os06g0115800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DF43]","Hypothetical conserved gene. (Os06t0115800-01);Conserved hypothetical protein. (Os06t0115800-02)",6,876948,880442,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS06T0128700-01",0.000419996927874441,0.0316108166166608,-0.9487017682083021,"OS06G0128700",null,396.489774656774,402.468132993488,215.63081975108,198.30805080602,"down","OS06G0128700","Os06g0128700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WSG7]","Ankyrin repeat domain containing protein. (Os06t0128700-01)",6,1523290,1526001]
["OS06T0115600-01",4.3309826311697204E-4,0.032126326785125496,-1.23724480394742,"OS06G0115600",null,352.661856121449,335.561665871809,129.768773877347,162.163233664036,"down","OS06G0115600","CYCLOPS [Source:UniProtKB/TrEMBL;Acc:A9XMT5]","Plant-specific protein with a short C-terminal coiled-coil domain and a functional NLS, Common symbiosis signaling (SYM) pathway (Os06t0115600-01)",6,871774,875187]
["OS12T0104400-01",0.000433230120302164,0.032126326785125496,-0.5832492512667811,"OS12G0104400",null,1937.37688607905,2087.46704674181,1383.59049122722,1302.82711615136,"down","OS12G0104400","Omega-3 fatty acid desaturase, chloroplast, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QYW4]","Fatty acid desaturase, type 1 domain containing protein. (Os12t0104400-01)",12,226239,230184,"GO:0016717;GO:0006629;GO:0055114;GO:0016020;GO:0016021","oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;lipid metabolic process;oxidation-reduction process;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. [GOC:mah];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0930200-01",0.00043702628677127,0.032329363470789005,-0.5350186823073091,"OS01G0930200",null,2319.82192061393,2315.99309267353,1528.9298395925,1670.47668412953,"down","OS01G0930200","Os01g0930200 protein [Source:UniProtKB/TrEMBL;Acc:Q5JK33]","Conserved hypothetical protein. (Os01t0930200-01)",1,40812546,40814128]
["OS07T0159500-01",0.000438995651829271,0.032367710872862096,-0.670450864266633,"OS07G0159500",null,1665.5056286029,1796.76028912484,1028.62762041325,1146.74971702227,"down","OS07G0159500","Os07g0159500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X2W3]","Conserved hypothetical protein. (Os07t0159500-01)",7,3183342,3187245]
["OS08T0376600-01",0.000440722955063847,0.032367710872862096,-1.79924616703166,"OS08G0376600",null,182.446451577282,181.16212636024,43.9067280036135,60.5669908865676,"down","OS08G0376600","Os08g0376600 protein [Source:UniProtKB/TrEMBL;Acc:Q8GVV7]","Serine/threonine protein kinase domain containing protein. (Os08t0376600-01)",8,17672834,17674381,"GO:0016310;GO:0016301;GO:0004674;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein serine/threonine kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0525400-01",4.5445961684579406E-4,0.0331375900092427,-0.563075617437785,"OS09G0525400",null,1637.94104851783,1799.26930044148,1171.82178516311,1154.68037464392,"down","OS09G0525400","Os09g0525400 protein [Source:UniProtKB/TrEMBL;Acc:Q651M5]","Similar to RING finger protein 13 (C-RZF). (Os09t0525400-01)",9,20528648,20532222,"GO:0043161;GO:0061630;GO:0016567;GO:0048437","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;floral organ development","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The process whose specific outcome is the progression of the floral organ over time, from its formation to the mature structure. [GOC:go_curators, GOC:PO_curators, PO:0025395]"]
["OS05T0135200-01",4.5933404702581205E-4,0.0332549142292242,-0.7543452674576511,"OS05G0135200",null,1219.7967080567,1275.51614972124,686.286727244671,792.973061516935,"down","OS05G0135200","Peroxidase [Source:UniProtKB/TrEMBL;Acc:A0A0N7KK39]","Plant peroxidase domain containing protein. (Os05t0135200-01)",5,2061827,2063241,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0016020;GO:0016021","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;membrane;integral component of membrane","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0426350-00",0.000458858678440705,0.0332549142292242,-0.652903688882968,"OS05G0426350",null,990.379174290937,925.900413073319,619.775599747985,598.976224564453,"down","OS05G0426350","Os05g0426350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WMS8]","Hypothetical protein. (Os05t0426350-00)",5,20898381,20900873]
["OS11T0179700-00",0.000463180827091136,0.0334541386035187,-1.50334102455926,"OS11G0179700",null,2483.7904770983,2850.04188193905,814.70438792803,1066.72801638987,"down","OS11G0179700","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:Q53NP9]","Similar to Dirigent-like protein. (Os11t0179700-00)",11,3959111,3959687,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0249700-02",0.000469071824775341,0.0337201938600852,-26.4059031954652,"OS03G0249700",null,261.472109476148,210.035967252842,0,5.30298272031166e-06,"down","OS03G0249700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P23]","Conserved hypothetical protein. (Os03t0249700-01);Conserved hypothetical protein. (Os03t0249700-02)",3,7907082,7907812,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0631200-01",4.7705255330625205E-4,0.0339491042688922,-0.663957921773438,"OS01G0631200",null,5808.72808680965,6303.61853312563,3619.86579763125,4024.7742331074,"down","OS01G0631200","Os01g0631200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JL19]","Similar to siroheme uroporphyrinogen methyltransferase1. (Os01t0631200-01)",1,25234709,25238165,"GO:0009236;GO:0051287;GO:0006779;GO:0032259;GO:0008168;GO:0055114;GO:0008152;GO:0019354;GO:0004851;GO:0016740;GO:0009507;GO:0043115;GO:0051266","cobalamin biosynthetic process;NAD binding;porphyrin-containing compound biosynthetic process;methylation;methyltransferase activity;oxidation-reduction process;metabolic process;siroheme biosynthetic process;uroporphyrin-III C-methyltransferase activity;transferase activity;chloroplast;precorrin-2 dehydrogenase activity;sirohydrochlorin ferrochelatase activity","The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. [ISBN:0198506732];Catalysis of the reaction: 2 S-adenosyl-L-methionine + uroporphyrin III = 2 S-adenosyl-L-homocysteine + precorrin-2. [EC:2.1.1.107];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the reaction: NAD(+) + precorrin-2 = 2 H(+) + NADH + sirohydrochlorin. [EC:1.3.1.76, RHEA:15616];Catalysis of the reaction: siroheme + 2 H+ = Fe(2+) + sirohydrochlorin. [EC:4.99.1.4, RHEA:24363]"]
["OS01T0864700-00",0.00047349857754041,0.0339491042688922,-0.776796430095209,"OS01G0864700",null,3240.20820985574,3773.52474566273,2015.80666789923,2077.83854218918,"down","OS01G0864700","Os01g0864700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAQ9]","Similar to Serine/threonine-protein kinase Nek5. (Os01t0864700-00)",1,37417036,37417649]
["OS08T0189200-01",0.000475711239386175,0.0339491042688922,-1.04922440400114,"OS08G0189200","GER2",8508.73171936953,7873.34718482658,3568.15342909366,4348.12381348569,"down","OS08G0189200","Germin-like protein 8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q6YZZ7]","Germin-like protein 8-3, Disease resistance (Os08t0189200-01)",8,5222239,5223278,"GO:0005618;GO:0045735;GO:0030145;GO:0048046;GO:0046872;GO:0005576","cell wall;nutrient reservoir activity;manganese ion binding;apoplast;metal ion binding;extracellular region","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Functions in the storage of nutritious substrates. [GOC:ai];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS04T0325300-01",4.8110228291150506E-4,0.0339596209960595,-1.11922797922505,"OS04G0325300",null,309.853191505551,322.180372447473,133.671594144334,157.278798915119,"down","OS04G0325300","Os04g0325300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JE52]","Similar to NB-ARC domain containing protein, expressed. (Os04t0325300-01)",4,15067485,15069035,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS06T0172200-02",4.8129470709916704E-4,0.0339596209960595,-0.5931240160202751,"OS06G0172200","CML30",918.347781402965,897.575989693918,590.301565381915,613.485004463943,"down","OS06G0172200","Probable calcium-binding protein CML30 [Source:UniProtKB/Swiss-Prot;Acc:Q5SND2]","EF-Hand type domain containing protein. (Os06t0172200-02)",6,3649517,3650686,"GO:0005509;GO:0046872","calcium ion binding;metal ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS10T0140700-00",4.8597227489065504E-4,0.0341320113619754,-0.8064280127355751,"OS10G0140700",null,738.959091583962,862.578760737962,468.338432038544,447.414223000774,"down","OS10G0140700","Os10g0140700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRK6]","Hypothetical conserved gene. (Os10t0140700-00)",10,2507002,2508368]
["OS10T0398100-01",0.000490036029478246,0.0343384880105949,-1.50167635932498,"OS10G0398100",null,258.890495534243,202.77806189186,86.83775094048,76.1971820831012,"down","OS10G0398100","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:Q8S5Q4]","Plant disease resistance response protein family protein. (Os10t0398100-01)",10,13402709,13403493,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS04T0524600-01",4.9233278862506006E-4,0.034341898077791796,-1.19998279970426,"OS04G0524600",null,849.328979057349,669.206620918743,336.859802404894,324.129089052318,"down","OS04G0524600",null,"Oligopeptide transporter OPT superfamily protein. (Os04t0524600-01)",4,26247730,26252252,"GO:0022857;GO:0005886;GO:0006810;GO:0055085;GO:0016020;GO:0016021","transmembrane transporter activity;plasma membrane;transport;transmembrane transport;membrane;integral component of membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0567366-02",0.000510005928697952,0.0351201244054836,"-Inf","OS09G0567366",null,101.350917241023,104.261550655572,0,0,"down","OS09G0567366","Os09g0567350 protein [Source:UniProtKB/TrEMBL;Acc:Q652L5]","Similar to Aldo-keto reductase/ oxidoreductase. (Os09t0567366-01);Similar to Aldo-keto reductase/ oxidoreductase. (Os09t0567366-02);Similar to Aldo-keto reductase/ oxidoreductase. (Os09t0567366-03)",9,22649087,22652058,"GO:0009505;GO:0009507;GO:0009570;GO:0009941","plant-type cell wall;chloroplast;chloroplast stroma;chloroplast envelope","A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS01T0908200-01",0.000520839415679042,0.0356786677753948,-0.46309698377776204,"OS01G0908200",null,2456.40194581703,2377.75290847815,1774.80751641273,1732.02056196588,"down","OS01G0908200","Os01g0908200 protein [Source:UniProtKB/TrEMBL;Acc:Q8L3R7]","Member of the Bric-a-Brac/Tramtrack/Broad (BTB) family, BT1/BT2 ortholog, Negative regulation of nitrate uptake and nitrogen use efficiency (Os01t0908200-01)",1,39544235,39548599,"GO:0016573;GO:0019005;GO:0042787;GO:0030162;GO:0031625;GO:0043161;GO:0005634;GO:0005737;GO:0004402;GO:0003712;GO:0006355;GO:0008270","histone acetylation;SCF ubiquitin ligase complex;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;regulation of proteolysis;ubiquitin protein ligase binding;proteasome-mediated ubiquitin-dependent protein catabolic process;nucleus;cytoplasm;histone acetyltransferase activity;transcription cofactor activity;regulation of transcription, DNA-templated;zinc ion binding","The modification of a histone by the addition of an acetyl group. [GOC:ai];A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). [PMID:15571813, PMID:15688063];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. [GOC:mah];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone. [EC:2.3.1.48];Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS06T0192400-01",0.000527266124369976,0.0359576665887311,-1.10304412630406,"OS06G0192400",null,385.277981543086,413.790765891003,165.869861346984,206.123146404287,"down","OS06G0192400","Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q69TI8]","Glycosyl transferase, family 31 protein. (Os06t0192400-01)",6,4653460,4655652,"GO:0006486;GO:0008378;GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0016740","protein glycosylation;galactosyltransferase activity;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;transferase activity","A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr];Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [ISBN:0198506732];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0577500-02",5.2671158082019307E-4,0.0359576665887311,-1.41920014689394,"OS10G0577500",null,446.467989253066,482.314538717279,180.21990240786,167.070053330126,"down","OS10G0577500","Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q7XBU8]","Concanavalin A-like lectin/glucanase, subgroup domain containing protein. (Os10t0577500-01);Hypothetical conserved gene. (Os10t0577500-02)",10,23008601,23011807,"GO:0005618;GO:0010411;GO:0008152;GO:0006073;GO:0016798;GO:0016762;GO:0048046;GO:0042546;GO:0004553;GO:0005975;GO:0016787;GO:0005576;GO:0071555;GO:0016740","cell wall;xyloglucan metabolic process;metabolic process;cellular glucan metabolic process;hydrolase activity, acting on glycosyl bonds;xyloglucan:xyloglucosyl transferase activity;apoplast;cell wall biogenesis;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization;transferase activity","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:tair_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. [ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. [EC:2.4.1.207, GOC:ask, PMID:1400418, PMID:1554366];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:0198506732];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0130400-02",0.00053389783599575,0.0360925035591044,-0.965336586863427,"OS03G0130400",null,1411.38526081806,1660.49610158642,741.315576341317,831.975829988339,"down","OS03G0130400","Probable adenylate kinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10S93]","Adenylate kinase, subfamily protein. (Os03t0130400-01);Similar to ESTs AU065232(E60855). (Os03t0130400-02);Non-protein coding transcript. (Os03t0130400-03)",3,1716495,1719628,"GO:0019205;GO:0016310;GO:0006139;GO:0005524;GO:0004017;GO:0016776;GO:0046939;GO:0016301;GO:0005739;GO:0009536;GO:0009507;GO:0000166;GO:0016740","nucleobase-containing compound kinase activity;phosphorylation;nucleobase-containing compound metabolic process;ATP binding;adenylate kinase activity;phosphotransferase activity, phosphate group as acceptor;nucleotide phosphorylation;kinase activity;mitochondrion;plastid;chloroplast;nucleotide binding;transferase activity","Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. [GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reaction: ATP + AMP = 2 ADP. [EC:2.7.4.3];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor). [GOC:jl];The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. [GOC:ai];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0566400-01",5.35995799462063E-4,0.0360925035591044,-0.49978112062147506,"OS05G0566400",null,3996.88861825213,4385.01786332935,2970.51498414154,2957.28720024566,"down","OS05G0566400","Mitogen-activated protein kinase [Source:UniProtKB/TrEMBL;Acc:Q0DFW7]","Similar to Blast and wounding induced mitogen-activated protein kinase. (Os05t0566400-01)",5,28188894,28194022,"GO:0004707;GO:0010468;GO:0005634;GO:0005737;GO:0000165;GO:0016310;GO:0016301;GO:0005622;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016740","MAP kinase activity;regulation of gene expression;nucleus;cytoplasm;MAPK cascade;phosphorylation;kinase activity;intracellular;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli. [GOC:ma, ISBN:0198547684];Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0187700-01",0.000537512736298525,0.0360925035591044,-0.729862822631508,"OS07G0187700",null,4108.60049318667,4714.30442915899,2577.77983848754,2742.08988169014,"down","OS07G0187700","Os07g0187700 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z4F3]","WD40 protein, Regulation of the plasma membrane localization of phosphate transporters, Phosphate uptake and translocation (Os07t0187700-01)",7,4682480,4687646,"GO:0030176;GO:0009306;GO:0005096;GO:0043547;GO:0003400;GO:0051020;GO:0005090;GO:0016020;GO:0016021","integral component of endoplasmic reticulum membrane;protein secretion;GTPase activator activity;positive regulation of GTPase activity;regulation of COPII vesicle coating;GTPase binding;Sar guanyl-nucleotide exchange factor activity;membrane;integral component of membrane","The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];The controlled release of proteins from a cell. [GOC:ai];Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Any process that modulates the rate, frequency, or extent of the addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb];Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP. [GOC:ai];Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Sar family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0453700-00",0.00053587278640542,0.0360925035591044,-0.901144631107171,"OS08G0453700",null,713.541439543108,814.363864068216,382.132959832167,436.001855057003,"down","OS08G0453700","Os08g0453700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGC6]","Similar to ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase. (Os08t0453700-00)",8,22210390,22219247,"GO:0050664;GO:0005509;GO:0055114;GO:0016491;GO:0098869;GO:0004601;GO:0016020;GO:0016021","oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor;calcium ion binding;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification;peroxidase activity;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule. [EC:1.6.3.-];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0502400-02",5.37095580086532E-4,0.0360925035591044,-1.1821067427971,"OS10G0502400",null,906.180294948284,961.829242626367,460.752936309028,362.492821821138,"down","OS10G0502400","Glutamyl-tRNA reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0C587]","Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment). (Os10t0502400-01);Similar to Glutamyl-tRNA reductase. (Os10t0502400-02)",10,19159179,19162398,"GO:0033014;GO:0008883;GO:0050661;GO:0055114;GO:0006782;GO:0006779;GO:0015995;GO:0009536;GO:0009507;GO:0016491","tetrapyrrole biosynthetic process;glutamyl-tRNA reductase activity;NADP binding;oxidation-reduction process;protoporphyrinogen IX biosynthetic process;porphyrin-containing compound biosynthetic process;chlorophyll biosynthetic process;plastid;chloroplast;oxidoreductase activity","The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah];Catalysis of the reaction: (S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = L-glutamyl-tRNA(Glu) + H(+) + NADPH. [EC:1.2.1.70, RHEA:12347];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS12T0637100-02",5.3144799300681208E-4,0.0360925035591044,-1.78675300074551,"OS12G0637100",null,3175.9163640746,2486.84507952069,707.352582253449,933.849345153259,"down","OS12G0637100","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q2QLL9]","Similar to Purple acid phosphatase (EC 3.1.3.2). (Os12t0637100-02)",12,27303890,27307145,"GO:0003993;GO:0016311;GO:0046872;GO:0016787","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0878900-01",0.000541092897646926,0.0361330681268151,-2.38899060047444,"OS01G0878900",null,87.6693632698973,102.561329303415,15.0638615618456,21.2542082359068,"down","OS01G0878900","Os01g0878900 protein [Source:UniProtKB/TrEMBL;Acc:Q8L3U9]","Similar to 4,5-DOPA dioxygenase extradiol-like protein. (Os01t0878900-01)",1,38144793,38146141,"GO:0016701;GO:0006725;GO:0008198;GO:0051213;GO:0016491;GO:0055114;GO:0008270","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;cellular aromatic compound metabolic process;ferrous iron binding;dioxygenase activity;oxidoreductase activity;oxidation-reduction process;zinc ion binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor. [GOC:mah];The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. [GOC:ai, ISBN:0198506732];Interacting selectively and non-covalently with ferrous iron, Fe(II). [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0895200-01",0.000544030221862233,0.0361330681268151,-4.42674733546741,"OS01G0895200",null,86.6365831512231,81.317090809426,4.87852533373483,2.93066084935005,"down","OS01G0895200","Os01g0895200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JGZ0]","DOMON related domain containing protein. (Os01t0895200-01)",1,38916092,38917927,"GO:0055114;GO:0016020;GO:0016021","oxidation-reduction process;membrane;integral component of membrane","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0603600-01",5.41177579741331E-4,0.0361330681268151,-2.29382510287321,"OS03G0603600",null,2253.57041585123,2069.98315971843,337.593953094451,544.126031029325,"down","OS03G0603600","Glycerophosphoryl diester phosphodiesterase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q6AUZ6]","PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os03t0603600-01)",3,22616005,22619553,"GO:0008081;GO:0006629","phosphoric diester hydrolase activity;lipid metabolic process","Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma]"]
["OS06T0226050-00",0.000551880781249544,0.036471958877028005,-0.757464410203291,"OS06G0226050",null,738.959091583962,838.904164679522,447.848625636858,485.512814042324,"down","OS06G0226050","Os06g0226050 protein [Source:UniProtKB/TrEMBL;Acc:Q67X24]","Similar to Salt-stress induced protein (Salt protein). (Os06t0226050-00)",6,6522344,6523338,"GO:0030246","carbohydrate binding","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah]"]
["OS06T0246000-01",0.00055843221267687,0.036471958877028005,-0.6008351868721731,"OS06G0246000",null,17242.6688162165,15896.8520410584,10474.0757327663,11377.2007039851,"down","OS06G0246000","G-box binding protein [Source:UniProtKB/TrEMBL;Acc:Q654W0]","Similar to HvB12D protein (B12Dg1 protein). (Os06t0246000-01)",6,7591680,7593322,"GO:0016020;GO:0016021;GO:0005777","membrane;integral component of membrane;peroxisome","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS09T0425900-02",5.5737366167086307E-4,0.036471958877028005,-1.03676878388005,"OS09G0425900",null,803.154297121089,652.234673474703,344.931877027791,364.450796686518,"down","OS09G0425900","Os09g0425900 protein [Source:UniProtKB/TrEMBL;Acc:Q84VG2]","Similar to senescence-associated protein DH. (Os09t0425900-01);Similar to Senescence-associated protein 5. (Os09t0425900-02)",9,15444237,15446516,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0480600-01",0.000558017142358847,0.036471958877028005,-0.69092374289745,"OS09G0480600",null,727.747298470274,738.029798865297,428.334524301918,479.651492343624,"down","OS09G0480600","Os09g0480600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0W3]","Conserved hypothetical protein. (Os09t0480600-01)",9,18448401,18449178,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0557800-01",0.000560848484010019,0.0365352726726527,-0.9878435851071471,"OS11G0557800",null,2330.01445980819,2644.34944670146,1151.33197876142,1356.89597324907,"down","OS11G0557800","NA","Conserved hypothetical protein. (Os11t0557800-01)","NA","NA","NA","NA","NA","NA"]
["OS07T0479300-02",0.000569509022753507,0.0369419101128771,-0.809381222351457,"OS07G0479300",null,808.395736409993,920.499034265405,501.829521947019,484.723735415051,"down","OS07G0479300","Carboxypeptidase [Source:UniProtKB/TrEMBL;Acc:Q0D6H5]","Peptidase S10, serine carboxypeptidase family protein. (Os07t0479300-01);Similar to Serine carboxypeptidase-like. (Os07t0479300-02);Non-protein coding transcript. (Os07t0479300-03)",7,17410041,17413849,"GO:0004185;GO:0006508;GO:0005773;GO:0051603;GO:0004180;GO:0016787;GO:0008233;GO:0005777;GO:0005789","serine-type carboxypeptidase activity;proteolysis;vacuole;proteolysis involved in cellular protein catabolic process;carboxypeptidase activity;hydrolase activity;peptidase activity;peroxisome;endoplasmic reticulum membrane","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah]"]
["OS06T0713000-01",5.8156145210753909E-4,0.037425469192295197,-0.874633735940975,"OS06G0713000",null,493.318897002259,451.87598563719,242.950561619995,272.551458989554,"down","OS06G0713000","Os06g0713000 protein [Source:UniProtKB/TrEMBL;Acc:O82114]","Zinc finger, B-box domain containing protein. (Os06t0713000-01)",6,30196103,30197569,"GO:0009640;GO:0006355;GO:0000989;GO:0005634;GO:0005622;GO:0008270","photomorphogenesis;regulation of transcription, DNA-templated;transcription factor activity, transcription factor binding;nucleus;intracellular;zinc ion binding","The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0614700-01",0.000579830296923765,0.037425469192295197,-2.63534919283881,"OS07G0614700",null,381.468285488102,274.374013585342,40.9796128033726,64.5757413760728,"down","OS07G0614700","Os07g0614700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X8L1]","SPX, N-terminal domain containing protein. (Os07t0614700-01)",7,25326762,25327995,"GO:0016036","cellular response to phosphate starvation","Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]"]
["OS02T0614100-01",5.8740352839030407E-4,0.0374675325954977,-0.517796293077866,"OS02G0614100",null,1484.03370668448,1501.79285431586,1004.00051368263,1081.41385341017,"down","OS02G0614100","Os02g0614100 protein [Source:UniProtKB/TrEMBL;Acc:Q6K5Y4]","Golgi-localized nucleotide sugar transporter, UDP-glucose transporter, Modulation of cell wall biosynthesis and plant growth (Os02t0614100-01)",2,24235668,24239738,"GO:0016020;GO:0016021;GO:0015165;GO:0090481","membrane;integral component of membrane;pyrimidine nucleotide-sugar transmembrane transporter activity;pyrimidine nucleotide-sugar transmembrane transport","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of a pyrimidine nucleotide-sugar from one side of the membrane to the other. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The directed movement of pyrimidine nucleotide-sugars across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. [GOC:tb]"]
["OS05T0354400-01",0.000588649373063593,0.0374675325954977,-0.8598457768102981,"OS05G0354400",null,595.044862559764,564.836189067939,299.202003012345,339.905745849698,"down","OS05G0354400","Os05g0354400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WL81]","Similar to ESK1 (ESKIMO 1). (Os05t0354400-01);Similar to ESK1 (ESKIMO 1). (Os05t0354400-02)",5,16781887,16786652,"GO:0005794;GO:0071554;GO:0016413;GO:0016020;GO:0016021","Golgi apparatus;cell wall organization or biogenesis;O-acetyltransferase activity;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah];Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0397800-01",5.9085784501202506E-4,0.037495558940400096,-1.6098088312923,"OS09G0397800",null,596.2635428643,589.806240934191,160.99133601325,227.61465929952,"down","OS09G0397800","Os09g0397800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMN1]","Hypothetical gene. (Os09t0397800-01)",9,13888829,13889235]
["OS01T0716200-03",0.000600375063334537,0.0376988329648954,-0.66599049528041,"OS01G0716200",null,2883.24179559332,3304.45328052235,1914.20837706759,1985.62263035838,"down","OS01G0716200","Calmodulin-binding family protein-like [Source:UniProtKB/TrEMBL;Acc:Q5JMB8]","IQ calmodulin-binding region domain containing protein. (Os01t0716200-01);Similar to Calmodulin binding protein. (Os01t0716200-02);IQ calmodulin-binding region domain containing protein. (Os01t0716200-03)",1,29801081,29806870]
["OS02T0704900-01",5.9837365058879608E-4,0.0376988329648954,-0.621083993366067,"OS02G0704900","IPP",2354.51559736762,2512.41623001025,1673.51113896341,1490.88139490264,"down","OS02G0704900","Soluble inorganic pyrophosphatase [Source:UniProtKB/TrEMBL;Acc:B7E5N1]","Similar to Inorganic pyrophosphatase-like protein. (Os02t0704900-01);Similar to Inorganic pyrophosphatase-like protein. (Os02t0704900-02)",2,29081845,29086702,"GO:0004427;GO:0006796;GO:0005737;GO:0000287;GO:0046872;GO:0016787","inorganic diphosphatase activity;phosphate-containing compound metabolic process;cytoplasm;magnesium ion binding;metal ion binding;hydrolase activity","Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. [EC:3.6.1.1, RHEA:24579];The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS06T0570566-00",6.01756493597892E-4,0.0376988329648954,"-Inf","OS06G0570566",null,40.1667113648935,40.0161948920119,0,0,"down","OS06G0570566","Os06g0570566 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WY46]","Similar to Ent-kaurene oxidase. (Os06t0570566-00)",6,22090108,22091615,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS02T0519900-05",0.000604097991927827,0.0377314191787404,-0.533183493259574,"OS02G0519900",null,7281.44207446516,7726.77309236109,5032.97000201151,5338.13001938486,"down","OS02G0519900","Elongation factor 2 [Source:UniProtKB/TrEMBL;Acc:Q6H4L2]","Similar to Elongation factor EF-2 (Fragment). (Os02t0519900-01);Similar to H0613H07.5 protein. (Os02t0519900-02);Similar to H0613H07.5 protein. (Os02t0519900-03);Similar to H0613H07.5 protein. (Os02t0519900-04);Similar to H0613H07.5 protein. (Os02t0519900-05)",2,18916988,18921785,"GO:0005525;GO:0006414;GO:0003746;GO:0003924","GTP binding;translational elongation;translation elongation factor activity;GTPase activity","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS03T0608700-01",0.000605263587476143,0.0377314191787404,-0.45675875711315406,"OS03G0608700",null,2915.91559612874,3098.68981123,2153.50674973174,2228.86336951227,"down","OS03G0608700","Os03g0608700 protein [Source:UniProtKB/TrEMBL;Acc:Q10GY9]","Similar to 10A19I.15. (Os03t0608700-01);Putative harbinger transposase-derived nuclease domain containing protein. (Os03t0608700-02)",3,22911337,22918539,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0652700-01",0.000607615155667069,0.0377314191787404,-0.816757760733902,"OS04G0652700",null,5904.29399284384,5167.19257737496,2966.5947202324,3318.86941144273,"down","OS04G0652700","Os04g0652700 protein [Source:UniProtKB/TrEMBL;Acc:B9FCW0]","Similar to Nuclease PA3. (Os04t0652700-01);Similar to nuclease PA3. (Os04t0652700-02)",4,33253920,33256572,"GO:0006308;GO:0004519;GO:0016788;GO:0090305;GO:0003676","DNA catabolic process;endonuclease activity;hydrolase activity, acting on ester bonds;nucleic acid phosphodiester bond hydrolysis;nucleic acid binding","The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:go_curators, ISBN:0198506732];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of any ester bond. [GOC:jl];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0276900-00",6.2798499433443808E-4,0.0384492936811739,-0.43652357614470605,"OS03G0276900",null,2211.78100515475,2161.59355316196,1611.86477026599,1619.67856274079,"down","OS03G0276900","Beta-glucuronosyltransferase GlcAT14C [Source:Projected from Arabidopsis thaliana (AT2G37585) UniProtKB/Swiss-Prot;Acc:Q8S8P3]","Similar to BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein. (Os03t0276900-00)",3,9383048,9387390,"GO:0008375;GO:0016020;GO:0016740;GO:0015020;GO:0007186;GO:0018153","acetylglucosaminyltransferase activity;membrane;transferase activity;glucuronosyltransferase activity;G-protein coupled receptor signaling pathway;isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine","Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside. [EC:2.4.1.17];A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.  The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576). [GOC:bf, GOC:mah, PMID:16902576PMID\\:24568158, Wikipedia:G_protein-coupled_receptor];The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glutamine to produce N6-(L-isoglutamyl)-L-lysine. [RESID:AA0124]"]
["OS01T0720400-01",6.3116163339971406E-4,0.0385159921557035,-1.37845382321462,"OS01G0720400",null,268.063780809079,224.393997423479,83.9106357402391,105.503790576602,"down","OS01G0720400","Os01g0720400 protein [Source:UniProtKB/TrEMBL;Acc:Q8W0E7]","HAD-superfamily subfamily IB hydrolase, hypothetical 1 protein. (Os01t0720400-01)",1,30025366,30026465,"GO:0016791;GO:0016311","phosphatase activity;dephosphorylation","Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS06T0651900-01",0.000631595707973535,0.0385159921557035,-2.34851764803462,"OS06G0651900",null,78.4825517958139,90.5810631801201,15.6112810679515,17.5839650961003,"down","OS06G0651900","Os06g0651900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DAH9]","Uncharacterised protein family UPF0057 domain containing protein. (Os06t0651900-01)",6,26676696,26677651,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0243900-01",0.000634106066634749,0.0385214782473323,-0.638383353054351,"OS03G0243900",null,696.753458189027,715.844393448486,438.543288583751,468.955394354933,"down","OS03G0243900","Os03g0243900 protein [Source:UniProtKB/TrEMBL;Acc:Q10P77]","Similar to Thaumatin-like protein. (Os03t0243900-01)",3,7611453,7614083]
["OS11T0141333-00",6.4383147116191806E-4,0.0387211399742892,-1.15094377410039,"OS11G0141333",null,320.167988183523,256.284980987319,129.292272782019,130.302104244618,"down","OS11G0141333","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XYV1]","Similar to Sulfotransferase domain containing protein. (Os11t0141333-00)",11,1917488,1921931,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0302000-01",0.000648641887476118,0.038857464600334006,-3.19776432712749,"OS08G0302000",null,239.857446446208,172.938104346593,15.6112810679515,29.3783079815157,"down","OS08G0302000","Peroxidase 40 [Source:Projected from Arabidopsis thaliana (AT4G16270) UniProtKB/Swiss-Prot;Acc:O23474]","Similar to Peroxidase 40 precursor (EC 1.11.1.7) (Atperox P40). (Os08t0302000-01)",8,12455954,12457748,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0802400-01",0.000653051690823962,0.0390032493801466,-0.49123571109123804,"OS02G0802400",null,1442.24429598801,1383.41987402365,981.559297147449,1028.66195812187,"down","OS02G0802400","Os02g0802400 protein [Source:UniProtKB/TrEMBL;Acc:Q69II5]","Similar to calcineurin subunit B. (Os02t0802400-01)",2,34206968,34209799,"GO:0005509;GO:0005773","calcium ion binding;vacuole","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS12T0442800-01",0.000654834112329179,0.0390032493801466,-0.797634896987327,"OS12G0442800",null,484.145611727423,552.750351451415,297.590045357825,298.927406633705,"down","OS12G0442800","Os12g0442800 protein [Source:UniProtKB/TrEMBL;Acc:Q2QS20]","Similar to Sulfite oxidase (EC 1.8.3.1) (Moco containig protein AtMCP) (At-SO) (AtSOX). (Os12t0442800-01)",12,14827496,14830607,"GO:0043546;GO:0042128;GO:0030151;GO:0055114;GO:0046872;GO:0016491;GO:0008482;GO:0006790;GO:0010477;GO:0015994;GO:0005739;GO:0005777","molybdopterin cofactor binding;nitrate assimilation;molybdenum ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;sulfite oxidase activity;sulfur compound metabolic process;response to sulfur dioxide;chlorophyll metabolic process;mitochondrion;peroxisome","Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [ISSN:09498257];The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899];Interacting selectively and non-covalently with molybdenum (Mo) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the reaction: H(2)O + O(2) + sulfite = H(2)O(2) + H(+) + sulfate. [EC:1.8.3.1, RHEA:24603];The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus. [PMID:17425719];The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS10T0452700-01",0.000668107513526383,0.0394054454696102,-1.91629262128971,"OS10G0452700",null,166.138388866463,242.921942164868,49.7609584040953,58.6132169870009,"down","OS10G0452700","Os10g0452700 protein [Source:UniProtKB/TrEMBL;Acc:Q7XDT3]","Eggshell protein family protein. (Os10t0452700-01)",10,16507486,16508277]
["OS03T0196000-00",6.8075028472552109E-4,0.0397841613674725,-1.31017392946664,"OS03G0196000",null,1822.11297815211,2159.72192962464,709.584796882086,896.178760120469,"down","OS03G0196000","Os03g0196000 protein [Source:UniProtKB/TrEMBL;Acc:Q8H7X4]","Similar to Sulfate transporter. (Os03t0196000-00)",3,4998396,5001806,"GO:0015116;GO:0005887;GO:0008271;GO:1902358;GO:0008272;GO:0006810;GO:0055085;GO:0016021;GO:0016020","sulfate transmembrane transporter activity;integral component of plasma membrane;secondary active sulfate transmembrane transporter activity;sulfate transmembrane transport;sulfate transport;transport;transmembrane transport;integral component of membrane;membrane","Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other. [GOC:ai];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];The directed movement of sulfate across a membrane. [GOC:dph, GOC:TermGenie, PMID:9055073];The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0686500-01",0.000686188105283854,0.0400084331920464,-0.58251887426998,"OS11G0686500",null,863.47752633459,832.97551775779,554.821084807205,578.06486112543,"down","OS11G0686500","NB-ARC domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QZH9]","NB-ARC domain containing protein. (Os11t0686500-01)",11,27793778,27797821,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS02T0121100-01",7.02031032491506E-4,0.0405607691817219,-0.46098497829467205,"OS02G0121100",null,2087.43202698476,2253.20394660549,1581.61791319683,1571.81110220141,"down","OS02G0121100","Cold shock domain protein 1 [Source:UniProtKB/TrEMBL;Acc:Q6YUR8]","Zinc finger, CCHC-type domain containing protein. (Os02t0121100-01)",2,1103076,1104294,"GO:0006355;GO:0003676;GO:0003677;GO:0008270","regulation of transcription, DNA-templated;nucleic acid binding;DNA binding;zinc ion binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0191100-01",7.0229925691054306E-4,0.0405607691817219,-0.44647014469564505,"OS08G0191100",null,7569.99885957805,7995.83748617242,5617.13406926229,5805.63914256244,"down","OS08G0191100","Os08g0191100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDH5]","Similar to Iron-responsive element binding protein (Fragment). (Os08t0191100-01)",8,5327664,5328165]
["OS03T0321700-01",7.1136908702553207E-4,0.0410070723524605,-0.45763078095492904,"OS03G0321700",null,2682.81334713751,2897.71893565126,2047.21541233356,2016.42277444166,"down","OS03G0321700","Os03g0321700 protein [Source:UniProtKB/TrEMBL;Acc:Q10M65]","Similar to WRKY transcription factor 55. (Os03t0321700-01)",3,11650891,11652144,"GO:0003700;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS04T0423400-01",7.3634231494514209E-4,0.0420734416632434,"-Inf","OS04G0423400",null,79.3821717524782,64.7520549424486,0,0,"down","OS04G0423400","OSJNBb0088C09.10 protein [Source:UniProtKB/TrEMBL;Acc:Q7XJY1]","Similar to OSIGBa0076I14.3 protein. (Os04t0423400-01);Similar to OSIGBa0076I14.3 protein. (Os04t0423400-02)",4,20934960,20936052,"GO:0006950","response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS06T0649900-01",0.000735024522454433,0.0420734416632434,-0.55014253885972,"OS06G0649900",null,889.808671659033,884.194696269582,624.451242718059,587.109056819793,"down","OS06G0649900","Os06g0649900 protein [Source:UniProtKB/TrEMBL;Acc:Q67UR5]","Phospholipase D/Transphosphatidylase domain containing protein. (Os06t0649900-01)",6,26575128,26579581,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0110000-02",7.3675344625017108E-4,0.0420734416632434,-1.06364945112622,"OS07G0110000",null,328.032562023488,315.090133289715,142.588135845284,165.094824977895,"down","OS07G0110000","Os07g0110000 protein [Source:UniProtKB/TrEMBL;Acc:Q0D931]","Conserved hypothetical protein. (Os07t0110000-01);Hypothetical conserved gene. (Os07t0110000-02)",7,548481,554208,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0615000-01",7.4709863736915709E-4,0.0423476021686503,-0.543849730733176,"OS11G0615000",null,1087.54393202771,1194.02310555613,772.758412863598,792.255316274296,"down","OS11G0615000","Os11g0615000 protein [Source:UniProtKB/TrEMBL;Acc:Q0IRM9]","LNS2, Lipin/Ned1/Smp2 domain containing protein. (Os11t0615000-01)",11,23906483,23909177,"GO:0008195;GO:0016311","phosphatidate phosphatase activity;dephosphorylation","Catalysis of the reaction: a 1,2-diacylglycerol 3-phosphate + H2O = a 1,2-diacyl-sn-glycerol + phosphate. [EC:3.1.3.4, GOC:pr];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS03T0626600-01",7.5096971491755906E-4,0.0424148038950517,-0.46612288079767605,"OS03G0626600",null,1781.84499376553,1854.98134623432,1277.87109240177,1354.8544990196,"down","OS03G0626600","LIM domain-containing protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q5KQN3]","Zinc finger, LIM-type domain containing protein. (Os03t0626600-01)",3,23855253,23861941,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0725400-01",7.5907051202119306E-4,0.0425117082510785,-0.8120304343357521,"OS01G0725400",null,505.549944035373,558.926333031878,282.95446935662,323.349580378288,"down","OS01G0725400","CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q5JM57]","Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os01t0725400-01)",1,30241954,30251103,"GO:0005886;GO:0016020;GO:0016021;GO:0051536","plasma membrane;membrane;integral component of membrane;iron-sulfur cluster binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai]"]
["OS06T0554800-02",0.000759733984848418,0.0425117082510785,-0.49549823292114203,"OS06G0554800",null,2896.78016477632,2920.38599477519,1949.86893665453,2176.34401675498,"down","OS06G0554800",null,"Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter). (Os06t0554800-01);Similar to Isoform 2 of Pleiotropic drug resistance protein 12. (Os06t0554800-02)",6,21113234,21120648,"GO:0016020;GO:0016021;GO:0042626;GO:0005886;GO:0055085;GO:0006810;GO:0016887;GO:0005524;GO:0000166","membrane;integral component of membrane;ATPase activity, coupled to transmembrane movement of substances;plasma membrane;transmembrane transport;transport;ATPase activity;ATP binding;nucleotide binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS07T0558200-02",0.000765549362153075,0.0426807739279211,-0.7485579953241911,"OS07G0558200",null,495.926693913063,510.374984266986,283.090331939681,315.858589046693,"down","OS07G0558200","Os07g0558200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z413]","Inositol monophosphatase family protein. (Os07t0558200-01);Similar to predicted protein. (Os07t0558200-02)",7,22303860,22308676,"GO:0046854","phosphatidylinositol phosphorylation","The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732]"]
["OS03T0339400-01",0.000769848638617082,0.0427643920127801,-2.12108825974688,"OS03G0339400",null,131.483755605974,161.604851355442,26.3440368021681,41.0292518909007,"down","OS03G0339400","Peroxidase [Source:UniProtKB/TrEMBL;Acc:C7IZT8]","Haem peroxidase, plant/fungal/bacterial family protein. (Os03t0339400-01)",3,12618079,12619711,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0915900-01",7.8642499794155511E-4,0.0432067118615054,-0.6147180994690581,"OS01G0915900",null,3857.87608502799,3478.10696006393,2283.1498561879,2507.66880009386,"down","OS01G0915900","Os01g0915900 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZX3]","Conserved hypothetical protein. (Os01t0915900-01)",1,39918940,39920664]
["OS06T0340600-03",0.000790923987443822,0.0432067118615054,-0.6360605920982491,"OS06G0340600",null,1304.97805263317,1341.46852087884,874.952396525123,827.950223187241,"down","OS06G0340600","Os06g0340600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z885]","Similar to phosphatidylinositol 3- and 4-kinase family protein. (Os06t0340600-01);Similar to phosphatidylinositol 3- and 4-kinase family protein. (Os06t0340600-02);Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein. (Os06t0340600-03)",6,13601989,13604917,"GO:0016301;GO:0016310","kinase activity;phosphorylation","Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732]"]
["OS06T0514100-01",7.9019160349691107E-4,0.0432067118615054,-1.99376236687681,"OS06G0514100",null,1900.84371553555,1317.92464232323,457.125830344613,351.052956184351,"down","OS06G0514100","Os06g0513050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WX20]","Conserved hypothetical protein. (Os06t0514100-01)",6,18726431,18727299,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0598200-01",7.8874972520593506E-4,0.0432067118615054,-0.543739359008185,"OS07G0598200",null,1399.43563137211,1365.92125954568,893.745841140222,1003.2628974275,"down","OS07G0598200","Os07g0598200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJE5]","Similar to Circadian clock coupling factor ZGT. (Os07t0598200-01)",7,24396230,24400772]
["OS08T0560900-01",7.8947683530094311E-4,0.0432067118615054,"-Inf","OS08G0560900",null,60.6035616541405,157.429940367836,0,0,"down","OS08G0560900","Chloroplast photosystem I reaction center subunit II-like protein [Source:UniProtKB/TrEMBL;Acc:Q84PB4]","Similar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D). (Os08t0560900-01);Similar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D). (Os08t0560900-02);Similar to Photosystem I reaction center subunit II, chloroplastic. (Os08t0560900-03)",8,28083386,28084239,"GO:0009538;GO:0009522;GO:0015979","photosystem I reaction center;photosystem I;photosynthesis","A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. [GOC:kd, ISBN:0943088399];A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). [GOC:ds, GOC:mah, ISBN:0140514031, PMID:9821949];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684]"]
["OS10T0122400-00",0.000791953346505728,0.0432067118615054,-1.08528828207585,"OS10G0122400",null,391.393505059643,310.857739549958,160.99133601325,169.978329262303,"down","OS10G0122400","Os10g0122400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XS94]","Hypothetical protein. (Os10t0122400-00)",10,1444042,1445372]
["OS10T0388900-01",0.000789557715887914,0.0432067118615054,-1.13492942398325,"OS10G0388900",null,276.217812164488,300.564436915853,116.108902942889,146.533042467502,"down","OS10G0388900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q338P9]","Conserved hypothetical protein. (Os10t0388900-01)",10,12867952,12869919,"GO:0005730;GO:0010501;GO:0004004;GO:0005737;GO:0005509;GO:0016020;GO:0016021","nucleolus;RNA secondary structure unwinding;ATP-dependent RNA helicase activity;cytoplasm;calcium ion binding;membrane;integral component of membrane","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The process in which a secondary structure of RNA are broken or 'melted'. [PMID:17169986];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0160700-01",7.9394176082983907E-4,0.043237983381235696,-1.13954747001745,"OS06G0160700",null,328.199762055222,267.625868486719,124.890248543612,145.556155517719,"down","OS06G0160700","Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:B7F2B2]","Starch synthase, Starch biosynthesis (Os06t0160700-01)",6,3079296,3086808,"GO:0019252;GO:0033201;GO:0009011;GO:0009507;GO:0009501;GO:0004373;GO:0009536;GO:0016757;GO:0016740","starch biosynthetic process;alpha-1,4-glucan synthase activity;starch synthase activity;chloroplast;amyloplast;glycogen (starch) synthase activity;plastid;transferase activity, transferring glycosyl groups;transferase activity","The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];Catalysis of the reaction: RDP-glucose + [alpha-D-glucosyl-(1,4)]n = RDP + [alpha-D-glucosyl-(1,4)]n+1, where RDP is ADP or UDP. [PMID:17472966];Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.21];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A plastid whose main function is to synthesize and store starch. [ISBN:0140514031];Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.11];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0498400-01",0.000811863464484249,0.0439009779945536,-0.41923135481048,"OS05G0498400",null,5454.48816354319,5797.38726985797,4196.88751426265,4217.52312580104,"down","OS05G0498400","Os05g0498400 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4U9]","Similar to Protein translation factor SUI1. (Os05t0498400-01);Similar to Protein translation factor SUI1. (Os05t0498400-02)",5,24537805,24539858,"GO:0006413;GO:0003743","translational initiation;translation initiation factor activity","The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732]"]
["OS06T0695200-00",0.000815782844463147,0.044034977851657296,-5.65888696770878,"OS06G0695200",null,90.146020233986,77.2412779338231,1.14745357291382,2.16559482357896,"down","OS06G0695200","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5U1K0]","Similar to Peroxidase precursor (EC 1.11.1.7). (Os06t0695200-00)",6,29021739,29023459,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS11T0545300-01",8.2358464770835107E-4,0.0440766175669592,-0.41201208254402105,"OS11G0545300",null,3781.19944167243,3864.90612731054,2957.92650175609,2788.69104448664,"down","OS11G0545300","NA","Similar to Topoisomerase 6 subunit A-like protein. (Os11t0545300-01);Hypothetical gene. (Os11t0545300-02)","NA","NA","NA","NA","NA","NA"]
["OS01T0941200-01",0.00081848975979236,0.0440766175669592,-0.723303979094116,"OS01G0941200",null,1162.38300097173,1222.24155473748,664.748972411986,779.638849528477,"down","OS01G0941200","Os01g0941200 protein [Source:UniProtKB/TrEMBL;Acc:Q8S9Q6]","Similar to Glucan endo-1,3-beta-glucosidase GII precursor (EC 3.2.1.39) ((1->3)- beta-glucan endohydrolase GII) ((1->3)-beta-glucanase isoenzyme GII) (Beta-1,3-endoglucanase GII). (Os01t0941200-01)",1,41365160,41366543,"GO:0030247;GO:0004553;GO:0046658;GO:0008152;GO:0016798;GO:0005975;GO:0016787","polysaccharide binding;hydrolase activity, hydrolyzing O-glycosyl compounds;anchored component of plasma membrane;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS06T0560000-02",0.000823767629966408,0.0440766175669592,-20.8963930299804,"OS06G0560000",null,411.356008943441,252.214822055374,1.61321456126507e-05,3.2384222935003904E-4,"down","OS06G0560000","Solute carrier family 40 member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5Z922]","Ferroportin1 family protein. (Os06t0560000-01);Ferroportin1 family protein. (Os06t0560000-02)",6,21397006,21399317,"GO:0034755;GO:0005381;GO:0006810;GO:0006811;GO:0016021;GO:0016020","iron ion transmembrane transport;iron ion transmembrane transporter activity;transport;ion transport;integral component of membrane;membrane","A process in which an iron ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0214800-03",0.000828564401397143,0.0440998067668887,-0.6962902741554681,"OS01G0214800",null,2597.5080547264,2944.59099217832,1779.34592293601,1640.99994846481,"down","OS01G0214800","Os01g0214800 protein [Source:UniProtKB/TrEMBL;Acc:Q9LHX8]","Lipase, GDSL domain containing protein. (Os01t0214800-01);Similar to Esterase. (Os01t0214800-02);Similar to Esterase. (Os01t0214800-03)",1,6278520,6283559,"GO:0016020;GO:0016021;GO:0016788","membrane;integral component of membrane;hydrolase activity, acting on ester bonds","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS04T0684800-01",8.2723153167175707E-4,0.0440998067668887,-0.643075146979744,"OS04G0684800",null,780.452840838158,697.461614514242,463.601421180139,482.776039152473,"down","OS04G0684800","Os04g0684800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J8W1]","Similar to CROC-1-like protein (Fragment). (Os04t0684800-01);Non-protein coding transcript. (Os04t0684800-02)",4,34975665,34977774,"GO:0070534;GO:0006301;GO:0031625;GO:0061630;GO:0005634;GO:0005737","protein K63-linked ubiquitination;postreplication repair;ubiquitin protein ligase binding;ubiquitin protein ligase activity;nucleus;cytoplasm","A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair. [GOC:mah, PMID:15556404];The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. [GOC:elh];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS07T0437500-02",0.000831418195133801,0.0440998067668887,-0.9075052703430161,"OS07G0437500",null,480.476686736981,580.760326765278,274.934469614966,290.817508574625,"down","OS07G0437500","Tyrosine decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XHL3]","Aromatic L-amino acid decarboxylase (AADC), Serotonin biosynthesis (Os07t0437500-01);Similar to Tryptophan decarboxylase. (Os07t0437500-02)",7,14668015,14676707,"GO:0006520;GO:0016831;GO:0030170;GO:0019752;GO:0016829;GO:0003824;GO:0004837","cellular amino acid metabolic process;carboxy-lyase activity;pyridoxal phosphate binding;carboxylic acid metabolic process;lyase activity;catalytic activity;tyrosine decarboxylase activity","The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: L-tyrosine = tyramine + CO2. [EC:4.1.1.25]"]
["OS07T0531400-01",0.000829997597444161,0.0440998067668887,"-Inf","OS07G0531400",null,38.5375053344936,37.6893845194366,0,0,"down","OS07G0531400","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q8GVN8]","Similar to Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27) (PRXR7) (ATP12a). (Os07t0531400-01);Plant peroxidase domain containing protein. (Os07t0531400-02)",7,20803306,20805360,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0006979;GO:0020037;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;response to oxidative stress;heme binding;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS06T0113900-04",8.3431576622623109E-4,0.0441768029284988,-0.7353697605785391,"OS06G0113900",null,755.662687792247,750.939901651544,480.650662703137,424.311359053421,"down","OS06G0113900","Os06g0113900 protein [Source:UniProtKB/TrEMBL;Acc:Q9LWT7]","Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-01);Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-02);Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-03);Similar to cDNA clone:J033107D23, full insert sequence. (Os06t0113900-04);Similar to cDNA clone:J033107D23, full insert sequence. (Os06t0113900-05);Hypothetical conserved gene. (Os06t0113900-06)",6,796330,804194,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0327000-02",0.000858253779309851,0.0452873393186089,-0.40562504203597705,"OS02G0327000","GAP1",2484.28347238714,2471.89788934449,1864.25763898354,1877.20907185733,"down","OS02G0327000","GTPase activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6YWF1]","C2 domain containing protein. (Os02t0327000-01);C2 domain containing protein. (Os02t0327000-02)",2,13173784,13176182,"GO:0009738;GO:0005515;GO:0005829;GO:0006952;GO:0008289;GO:0005737;GO:0005886;GO:0016310;GO:0016301;GO:0005096;GO:0046872;GO:0005634;GO:1901002;GO:0009651;GO:0016020;GO:0009611;GO:0043547;GO:1902479","abscisic acid-activated signaling pathway;protein binding;cytosol;defense response;lipid binding;cytoplasm;plasma membrane;phosphorylation;kinase activity;GTPase activator activity;metal ion binding;nucleus;positive regulation of response to salt stress;response to salt stress;membrane;response to wounding;positive regulation of GTPase activity;positive regulation of defense response to bacterium, incompatible interaction","A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with a lipid. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that activates or increases the frequency, rate or extent of response to salt stress. [GOC:TermGenie, PMID:22627139];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Any process that activates or increases the frequency, rate or extent of defense response to bacterium, incompatible interaction. [GOC:TermGenie, PMID:24134885]"]
["OS07T0679400-01",0.000861935772835351,0.0454032098821821,-1.54344232650286,"OS07G0679400",null,128.425993847695,164.692842145673,49.7609584040953,50.7981213887341,"down","OS07G0679400","Os07g0679400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XAF2]","Conserved hypothetical protein. (Os07t0679400-01)",7,28770335,28772979]
["OS02T0609200-00",8.712774848556701E-4,0.0457375768338667,-3.49383050381235,"OS02G0609200",null,82.5595674735185,49.4078526437019,6.82993546722877,4.88443474891674,"down","OS02G0609200","Os02g0609200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KFN3]","Similar to Atozi1 (Fragment). (Os02t0609200-00)",2,23904194,23904763,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0612900-01",8.7820828578153006E-4,0.0458718250916232,-0.49641925017911603,"OS01G0612900",null,949.944652905176,972.717098922881,683.969251789624,678.936430099428,"down","OS01G0612900","Os01g0612900 protein [Source:UniProtKB/TrEMBL;Acc:A2ZVC7]","Lipase, GDSL domain containing protein. (Os01t0612900-01)",1,24312652,24317113,"GO:0016788;GO:0016020;GO:0016021","hydrolase activity, acting on ester bonds;membrane;integral component of membrane","Catalysis of the hydrolysis of any ester bond. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0899700-01",8.8187359147665306E-4,0.0458718250916232,-0.449809534604437,"OS01G0899700",null,2037.48858493288,2143.06560842057,1479.1688811884,1581.57997169924,"down","OS01G0899700","Os01g0899700 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8V9]","Pollen Ole e 1 allergen and extensin domain containing protein. (Os01t0899700-01)",1,39136937,39139380]
["OS05T0443500-01",0.000878126480866622,0.0458718250916232,-0.42903360376960603,"OS05G0443500",null,7727.9832170891,8206.85019017157,5825.93495354614,6009.80851506716,"down","OS05G0443500","Ferredoxin [Source:UniProtKB/TrEMBL;Acc:Q40684]","Similar to Ferredoxin VI, chloroplast precursor (Fd VI). (Os05t0443500-01)",5,21705751,21707086,"GO:0022900;GO:0051537;GO:0051536;GO:0009536;GO:0009507;GO:0016192;GO:0009055;GO:0055114;GO:0046872;GO:0048193;GO:0016020","electron transport chain;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;plastid;chloroplast;vesicle-mediated transport;electron carrier activity;oxidation-reduction process;metal ion binding;Golgi vesicle transport;membrane","A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:0716731363, PMID:10219233];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0181500-01",8.8429225370178707E-4,0.0458718250916232,-0.633891721102505,"OS07G0181500",null,1033.0323788111,954.077907420332,600.058616049385,680.506153279217,"down","OS07G0181500","Os07g0181500 protein [Source:UniProtKB/TrEMBL;Acc:B7EKS3]","Protein of unknown function DUF506, plant family protein. (Os07t0181500-01)",7,4305620,4307513]
["OS01T0227100-01",9.1583360450331309E-4,0.0461378551722512,-1.72781044954037,"OS01G0227100","NYC1",261.861791021722,359.096018989476,81.7986982949925,105.674557447001,"down","OS01G0227100","Probable chlorophyll(ide) b reductase NYC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5N800]","Chlorophyll b reductase, Leaf senescence (Os01t0227100-01);Similar to oxidoreductase. (Os01t0227100-02)",1,7024297,7030591,"GO:0009536;GO:0009579;GO:0009535;GO:0009507;GO:0055114;GO:0016491;GO:0016020;GO:0016021;GO:0034256;GO:0010304;GO:0015996;GO:0042170","plastid;thylakoid;chloroplast thylakoid membrane;chloroplast;oxidation-reduction process;oxidoreductase activity;membrane;integral component of membrane;chlorophyll(ide) b reductase activity;PSII associated light-harvesting complex II catabolic process;chlorophyll catabolic process;plastid membrane","Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: 71-hydroxychlorophyll(ide) a + NAD(P)+ = chlorophyll(ide) b + NAD(P)H + H+. [EC:1.1.1.294, MetaCyc:RXN-7678];The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. [GOC:mah, PMID:16157880];The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl];Either of the lipid bilayers that surround a plastid and form the plastid envelope. [GOC:mah]"]
["OS03T0162200-01",0.000899684621651535,0.0461378551722512,-0.5497587196661541,"OS03G0162200",null,842.92299136543,902.72264101097,583.909956314663,608.600569715026,"down","OS03G0162200","Probable histone H2A variant 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H7Y8]","Similar to Histone H2A. (Os03t0162200-01)",3,3371375,3372344,"GO:0003677;GO:0006342;GO:0000786;GO:0005694;GO:0046982;GO:0005634;GO:0000790","DNA binding;chromatin silencing;nucleosome;chromosome;protein heterodimerization activity;nucleus;nuclear chromatin","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus. [GOC:elh, PMID:20404130]"]
["OS03T0390600-03",9.0084469680374506E-4,0.0461378551722512,-1.00127846261402,"OS03G0390600","H3",2757.42007588364,3442.96674678721,1492.47758973024,1604.96976257386,"down","OS03G0390600","Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q0JCT1]","Similar to Histone H3 (Fragment). (Os03t0390600-01);Similar to Histone H3.3. (Os03t0390600-02);Non-protein coding transcript. (Os03t0390600-03)",3,15645609,15648151,"GO:0005515;GO:0006334;GO:0005634;GO:0000786;GO:0005694;GO:0046982;GO:0003677;GO:0031492","protein binding;nucleosome assembly;nucleus;nucleosome;chromosome;protein heterodimerization activity;DNA binding;nucleosomal DNA binding","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with the DNA portion of a nucleosome. [GOC:mah]"]
["OS04T0127200-02",9.1048419635501507E-4,0.0461378551722512,-1.85614183332492,"OS04G0127200",null,5388.05189018449,4265.35952487782,1086.48120655931,1579.92583512884,"down","OS04G0127200","Os04g0127200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JF92]","Hypothetical conserved gene. (Os04t0127200-01);Similar to Subtilase. (Os04t0127200-02)",4,1705451,1710275,"GO:0004252;GO:0008236;GO:0006508;GO:0016787;GO:0008233","serine-type endopeptidase activity;serine-type peptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS04T0382900-01",0.000912829063085639,0.0461378551722512,-1.45344798142294,"OS04G0382900",null,179.326305988637,250.127254008741,76.1049952062634,80.7089812380626,"down","OS04G0382900","OSJNBa0072D21.16 protein [Source:UniProtKB/TrEMBL;Acc:Q7XVC6]","Conserved hypothetical protein. (Os04t0382900-01)",4,18786423,18787210]
["OS04T0686650-00",8.9841345861169108E-4,0.0461378551722512,-0.693319622258707,"OS04G0686650",null,596.2635428643,540.398388290489,341.496773361438,361.448171419839,"down","OS04G0686650","Os04g0686650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WGQ6]","Similar to H0723C07.13 protein. (Os04t0686650-00)",4,35091588,35097920,"GO:0004871;GO:0004672;GO:0006468;GO:0035556;GO:0005737;GO:0016310;GO:0016301;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular signal transduction;cytoplasm;phosphorylation;kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS05T0542100-01",9.0003179147304208E-4,0.0461378551722512,-0.48570676346955605,"OS05G0542100",null,3036.35742597051,3337.0887139767,2203.14204071465,2348.43622727917,"down","OS05G0542100","Os05g0542100 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKP1]","Similar to Fiber protein Fb11. (Os05t0542100-01)",5,26907931,26910905,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0596300-01",0.000906361456044892,0.0461378551722512,-0.49901750477812806,"OS06G0596300",null,1521.74610170325,1648.98708198355,1083.03262408913,1160.54169634262,"down","OS06G0596300","Acyl-[acyl-carrier-protein] hydrolase [Source:UniProtKB/TrEMBL;Acc:Q0DB74]","Similar to Acyl-ACP thioesterase (Fragment). (Os06t0596300-01)",6,23467234,23471674,"GO:0016790;GO:0006631;GO:0006629;GO:0006633;GO:0009536;GO:0009507;GO:0016787","thiolester hydrolase activity;fatty acid metabolic process;lipid metabolic process;fatty acid biosynthetic process;plastid;chloroplast;hydrolase activity","Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A. [http://www.onelook.com];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0632800-01",0.000894351089315469,0.0461378551722512,-0.43579615015008205,"OS07G0632800",null,3892.53071828848,4221.28341024628,2944.67789144235,3053.74860502275,"down","OS07G0632800","Os07g0632800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNW9]","Similar to predicted protein. (Os07t0632800-01)",7,26245519,26250364,"GO:0004871;GO:0004672;GO:0006468;GO:0035556;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0009742;GO:0009734;GO:0010305","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular signal transduction;cytoplasm;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;brassinosteroid mediated signaling pathway;auxin-activated signaling pathway;leaf vascular tissue pattern formation","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Vascular tissue pattern formation as it occurs in the leaf of vascular plants. [GOC:tair_curators]"]
["OS09T0553250-00",9.1047173529268106E-4,0.0461378551722512,-2.40144190112578,"OS09G0553250",null,358.623166906655,528.528933566619,76.4751312431791,91.440853245671,"down","OS09G0553250","Os09g0553250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQ67]","Hypothetical gene. (Os09t0553250-00)",9,21920150,21922356]
["OS10T0486100-00",9.1665613018972409E-4,0.0461378551722512,-1.34569569539317,"OS10G0486100",null,649.350573574278,813.779049917309,255.770641999532,319.918494307948,"down","OS10G0486100","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8W372]","Cytochrome P450-like protein (CYP86B1). (Os10t0486100-00)",10,18390302,18394392,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS12T0121400-00",9.0505474593937708E-4,0.0461378551722512,-0.49345326562471203,"OS12G0121400",null,1061.60745349292,1110.1525085681,767.016671144793,775.633983944341,"down","OS12G0121400","Os12g0121400 protein [Source:UniProtKB/TrEMBL;Acc:Q2QYF7]","Snf7 family protein. (Os12t0121400-00)",12,1012305,1015316,"GO:0007034;GO:0005622","vacuolar transport;intracellular","The directed movement of substances into, out of or within a vacuole. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS05T0114000-01",9.2733428842023511E-4,0.0463697498851309,-0.7827633405203631,"OS05G0114000",null,9371.57118760528,10847.7945477944,5543.61160927528,6208.94313960057,"down","OS05G0114000","Os05g0114000 protein [Source:UniProtKB/TrEMBL;Acc:Q75L10]","Similar to PRLI-interacting factor F (Fragment). (Os05t0114000-01)",5,739658,742961,"GO:0006796;GO:0004427;GO:0000287;GO:0005737","phosphate-containing compound metabolic process;inorganic diphosphatase activity;magnesium ion binding;cytoplasm","The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. [GOC:ai];Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. [EC:3.6.1.1, RHEA:24579];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS01T0660300-01",9.3796158409333009E-4,0.0466378598334469,-0.42917307208822,"OS01G0660300",null,1789.80988251233,1838.38385045107,1316.22613504166,1378.38748614431,"down","OS01G0660300","Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:Q0JKP1]","Similar to Pyruvate kinase. (Os01t0660300-01)",1,26888425,26895926,"GO:0004743;GO:0009570;GO:0006096;GO:0030955;GO:0016310;GO:0016301;GO:0000287;GO:0003824;GO:0016740","pyruvate kinase activity;chloroplast stroma;glycolytic process;potassium ion binding;phosphorylation;kinase activity;magnesium ion binding;catalytic activity;transferase activity","Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate. [EC:2.7.1.40];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Interacting selectively and non-covalently with potassium (K+) ions. [GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0169500-01",0.00094964707018538,0.0466378598334469,-0.5990549640551961,"OS03G0169500","CSLA4",669.742162331208,653.457798058019,422.239342274383,451.319101568937,"down","OS03G0169500","Probable mannan synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S7W0]","Similar to Cellulose synthase-like A1. (Os03t0169500-01)",3,3729174,3733685,"GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0071555;GO:0016740","transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0348600-00",9.4749725369759608E-4,0.0466378598334469,-2.50095553045852,"OS09G0348600",null,59.9419564415389,85.0167273443243,12.9670033140437,12.6413471363721,"down","OS09G0348600","Os09g0348600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQM4]","Protein kinase, catalytic domain domain containing protein. (Os09t0348600-00)",9,10956083,10965501,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0629400-01",0.000944437211664805,0.0466378598334469,-0.67296701969466,"OS11G0629400",null,2490.03732515809,2593.91226379435,1470.38753558768,1718.34414466891,"down","OS11G0629400","Protein SPIRAL1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q2R0W8]","Similar to Nitrilase associated protein-like. (Os11t0629400-01)",11,24651999,24653182,"GO:0005874","microtubule","Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568]"]
["OS04T0442000-01",0.000968021383629169,0.0473199829002214,-0.42661031582466,"OS04G0442000","ARF9",3522.21765115612,3462.82872033274,2701.97965157901,2494.94945025181,"down","OS04G0442000","Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q0JCZ4]","Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP). (Os04t0442000-01)",4,22006405,22012018,"GO:0009725;GO:0003677;GO:0005634;GO:0009734;GO:0006355;GO:0006351","response to hormone;DNA binding;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0110800-02",9.7308623485237709E-4,0.0474915825035301,-1.81808797605644,"OS05G0110800",null,228.05306812886,215.173274223517,59.384088768286,66.3133847088227,"down","OS05G0110800","Os05g0110800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WH08]","Conserved hypothetical protein. (Os05t0110800-01);Similar to predicted protein. (Os05t0110800-02)",5,575028,576861,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0549300-01",9.8206005146913916E-4,0.0477769087459955,-0.42164710213246304,"OS08G0549300",null,5233.8688762533,5690.3379394779,4067.7144232681,4087.99019557873,"down","OS08G0549300","Acyl carrier protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJI9]","Similar to Acyl carrier protein III, chloroplast precursor (ACP III). (Os08t0549300-01)",8,27565854,27568595,"GO:0009245;GO:0031177;GO:0000036;GO:0000035;GO:0005829;GO:0006633","lipid A biosynthetic process;phosphopantetheine binding;ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process;acyl binding;cytosol;fatty acid biosynthetic process","The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common. [ISBN:0198506732, PMID:20974832, PMID:22216004];Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). [CHEBI:16858, GOC:mah, GOC:vw];Interacting selectively and non-covalently with the attachment site of the phosphopantetheine prosthetic group of an acyl carrier protein (ACP) as part of the process of fatty acid biosynthesis. [CHEBI:22221, GOC:jl, GOC:vw];Interacting selectively and non-covalently with an acyl group, any group formally derived by removal of the hydroxyl group from the acid function of a carboxylic acid. [GOC:curators, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732]"]
["OS05T0165500-02",0.000995541338031908,0.0482586630554266,-0.7554463084735381,"OS05G0165500",null,519.395624916534,464.140360234435,286.219304608755,296.391125608611,"down","OS05G0165500","Os05g0165500 protein [Source:UniProtKB/TrEMBL;Acc:Q6F2S7]","Conserved hypothetical protein. (Os05t0165500-01);Conserved hypothetical protein. (Os05t0165500-02)",5,3856578,3859257]
["OS09T0356000-00",0.000996701243387477,0.0482586630554266,-1.44833749259447,"OS09G0356000",null,470.895310774883,658.771368582692,199.043833616381,214.915128952337,"down","OS09G0356000","Os09g0356000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XML9]","Similar to OsD305. (Os09t0356000-00)",9,11427219,11435151,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0255100-02",0.00100173704966734,0.0483492422455553,-0.669440060153209,"OS03G0255100",null,2233.98993936025,2437.11661722039,1368.22732808478,1568.73405403863,"down","OS03G0255100","Beta-galactosidase 8 [Source:Projected from Arabidopsis thaliana (AT2G28470) UniProtKB/Swiss-Prot;Acc:Q9SCV4]","Similar to Relative to SR12 protein (Fragment). (Os03t0255100-01);Similar to Beta-galactosidase. (Os03t0255100-02)",3,8196070,8201999,"GO:0030246;GO:0004553;GO:0005975;GO:0005618;GO:0004565;GO:0005773;GO:0008152;GO:0016798;GO:0048046;GO:0016787;GO:0005576;GO:0016020;GO:0016021","carbohydrate binding;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;cell wall;beta-galactosidase activity;vacuole;metabolic process;hydrolase activity, acting on glycosyl bonds;apoplast;hydrolase activity;extracellular region;membrane;integral component of membrane","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides. [EC:3.2.1.23];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0153400-01",1.0043176196524802E-3,0.0483973374063447,-0.421888141497725,"OS07G0153400",null,2553.23106816252,2662.87739144285,1879.20795855466,2014.34089045327,"down","OS07G0153400","Kelch repeat containing F-box protein family-like [Source:UniProtKB/TrEMBL;Acc:Q69NY4]","Kelch-type beta propeller domain containing protein. (Os07t0153400-01)",7,2824369,2826637]
["OS08T0203700-01",0.00101738575599587,0.048828838877009596,-0.547568387751724,"OS08G0203700",null,1867.42605150549,1663.56379628929,1169.07599638749,1246.72946925722,"down","OS08G0203700","Os08g0203700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZKW6]","Protein kinase, core domain containing protein. (Os08t0203700-01);Similar to SHR5-receptor-like kinase (Fragment). (Os08t0203700-02)",8,6040528,6048561,"GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0546700-01",1.0169889712431102E-3,0.048828838877009596,-0.5780013939937021,"OS08G0546700",null,960.19484107092,1066.27281486601,649.100995267377,708.4117611824,"down","OS08G0546700","Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:Q6ZFV7]","Peptidase S54, rhomboid domain containing protein. (Os08t0546700-01)",8,27376052,27378939,"GO:0004252;GO:0006508;GO:0016787;GO:0008233;GO:0016021;GO:0016020","serine-type endopeptidase activity;proteolysis;hydrolase activity;peptidase activity;integral component of membrane;membrane","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0629100-01",1.0277074166508602E-3,0.0490601828023702,"-Inf","OS04G0629100",null,104.796529743816,52.916274104904,0,0,"down","OS04G0629100","Histone-lysine N-methyltransferase ATXR2 [Source:Projected from Arabidopsis thaliana (AT3G21820) UniProtKB/Swiss-Prot;Acc:Q5PP37]","Similar to H0303G06.16 protein. (Os04t0629100-01);Similar to H0303G06.16 protein. (Os04t0629100-02)",4,32002722,32007327]
["OS03T0202200-01",0.00102978455925382,0.0490826487586937,-0.6044824189159971,"OS03G0202200","VDAC5",3555.5008368509,3839.38119246546,2279.13426598858,2584.53360340897,"down","OS03G0202200","Mitochondrial outer membrane protein porin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P97]","Porin-like protein. (Os03t0202200-01)",3,5348313,5351951,"GO:0008308;GO:0005739;GO:1903959;GO:0005741;GO:0006810;GO:0055085;GO:0006811;GO:0003676;GO:0046930;GO:0015288;GO:0016020;GO:0016021;GO:0098656","voltage-gated anion channel activity;mitochondrion;regulation of anion transmembrane transport;mitochondrial outer membrane;transport;transmembrane transport;ion transport;nucleic acid binding;pore complex;porin activity;membrane;integral component of membrane;anion transmembrane transport","Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, GOC:vw, ISBN:0815340729];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any process that modulates the frequency, rate or extent of anion transmembrane transport. [GO_REF:0000058, GOC:TermGenie, GOC:vw];The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any small opening in a membrane that allows the passage of gases and/or liquids. [ISBN:0198506732];Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820, TC:1.B.1.-.-];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process in which an anion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw]"]
["OS01T0901800-02",1.04430228323925E-3,0.049697076880880896,-0.47807174130328606,"OS01G0901800",null,1846.18618551761,2037.23013387427,1358.1247561094,1429.92177161532,"down","OS01G0901800","Os01g0901800 protein [Source:UniProtKB/TrEMBL;Acc:Q5N6Y5]","Similar to acid phosphatase/vanadium-dependent haloperoxidase related. (Os01t0901800-01);Acid phosphatase/vanadium-dependent haloperoxidase related family protein. (Os01t0901800-02)",1,39266781,39269329,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0814400-03",1.0524764426228502E-3,0.049775944698163,-0.680260659427907,"OS01G0814400",null,1929.62078219246,2089.18343665352,1191.449731032,1316.49514243982,"down","OS01G0814400","Os01g0814400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9N0]","Conserved hypothetical protein. (Os01t0814400-01);Conserved hypothetical protein. (Os01t0814400-02);Similar to 91A protein (Fragment). (Os01t0814400-03)",1,34639786,34642794,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0347100-01",1.05058740407962E-3,0.049775944698163,-0.39013211493931504,"OS06G0347100",null,2103.69751996351,2181.11104570489,1637.223850299,1632.34099126374,"down","OS06G0347100","Os06g0347100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DCC7]","Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6). (Os06t0347100-01)",6,13947426,13951272,"GO:0003995;GO:0050660;GO:0016627;GO:0055114;GO:0016491;GO:0008152","acyl-CoA dehydrogenase activity;flavin adenine dinucleotide binding;oxidoreductase activity, acting on the CH-CH group of donors;oxidation-reduction process;oxidoreductase activity;metabolic process","Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. [EC:1.3.99.3];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS09T0438100-01",0.00105693476825156,0.0498325170364532,-1.6941286622990201,"OS09G0438100",null,94.7906145066323,91.6103934435306,25.3683317354211,32.2372693428505,"down","OS09G0438100","Os09g0438100 protein [Source:UniProtKB/TrEMBL;Acc:Q69LJ5]","Conserved hypothetical protein. (Os09t0438100-01)",9,16200946,16201902,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0503900-01",1.0597849763532802E-3,0.0498899084707939,-0.93422570508868,"OS11G0503900",null,243.601686742851,274.693411871213,133.34263509268,137.893246752731,"down","OS11G0503900","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:Q2R3T7]","Sulfotransferase family protein. (Os11t0503900-01)",11,17943546,17945362,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0375600-01",1.0693492933413701E-3,0.0499988345403692,-0.7984124301135561,"OS09G0375600",null,413.817091287019,448.787994846959,228.31498561879,267.667024240638,"down","OS09G0375600","Os09g0375600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMI6]","Similar to Protein kinase family protein. (Os09t0375600-01)",9,12565503,12567065,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS11T0566800-01",1.0801585810406502E-3,0.050001522678718005,-1.1596383386918,"OS11G0566800",null,183.465705496708,187.338107940703,74.1535850727695,91.8273732796348,"no","OS11G0566800","NA","Similar to Bibenzyl synthase (EC 2.3.1.-). (Os11t0566800-01)","NA","NA","NA","NA","NA","NA"]
["OS02T0101000-01",1.07943096041569E-3,0.050001522678718005,0.40511855596098706,"OS02G0101000",null,1936.58244690969,1953.66883995305,2500.68993673866,2650.77196374844,"no","OS02G0101000","Os02g0101000 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU97]","Amino acid transporter, transmembrane domain containing protein. (Os02t0101000-01);Similar to amino acid permease. (Os02t0101000-02)",2,50308,55886,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0166600-01",0.0010764930788079,0.050001522678718005,0.45667381810446805,"OS02G0166600",null,800.114326749531,809.053587040618,1104.49813555757,1103.88225325518,"no","OS02G0166600","Os02g0166600 protein [Source:UniProtKB/TrEMBL;Acc:Q6H4W7]","Hypothetical protein. (Os02t0166600-01)",2,3580321,3581706]
["OS03T0327100-01",0.00107951473750118,0.050001522678718005,-0.572867421906969,"OS03G0327100",null,1015.09636393446,893.353820742772,650.907970248175,632.103534566917,"no","OS03G0327100","GRAB2 protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8H7M4]","Similar to CUC1. (Os03t0327100-01)",3,11937445,11939473,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0476900-01",1.08592664893653E-3,0.0501924825693024,-1.5622331494261599,"OS08G0476900",null,98.8024879560039,115.285519967136,38.6707670776243,33.8251090725927,"no","OS08G0476900","Patatin [Source:UniProtKB/TrEMBL;Acc:Q6ZG46]","Similar to Patatin-like protein 1. (Os08t0476900-01)",8,23491893,23494532,"GO:0005737;GO:0016020;GO:0016042;GO:0006629;GO:0016787;GO:0047372;GO:0004620;GO:0008152","cytoplasm;membrane;lipid catabolic process;lipid metabolic process;hydrolase activity;acylglycerol lipase activity;phospholipase activity;metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: H2O + acylglycerol = a fatty acid + glycerol. [EC:3.1.1.23, MetaCyc:3.1.1.23-RXN];Catalysis of the hydrolysis of a glycerophospholipid. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS04T0269600-04",1.08840543274574E-3,0.0502310616030933,-1.05053688721524,"OS04G0269600",null,897.587827207593,1151.83771838868,509.187471031961,480.251542730616,"no","OS04G0269600","Amine oxidase [Source:UniProtKB/TrEMBL;Acc:A0A0P0W8J1]","Similar to Primary amine oxidase. (Os04t0269600-01);Similar to cDNA clone:J023110G01, full insert sequence. (Os04t0269600-02);Hypothetical conserved gene. (Os04t0269600-03);Similar to cDNA clone:J023110G01, full insert sequence. (Os04t0269600-04)",4,11236469,11243987,"GO:0009308;GO:0048038;GO:0008131;GO:0005507;GO:0055114;GO:0046872;GO:0016491","amine metabolic process;quinone binding;primary amine oxidase activity;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity","The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds. [ISBN:0198506732];Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide. [EC:1.4.3.21, EC:1.4.3.22, EC:1.4.3.4, MetaCyc:RXN-9597];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS11T0226966-00",1.0906021296903999E-3,0.0502565252885386,-0.817960899706045,"OS11G0226966",null,570.782194878646,634.067442260841,312.225621359029,371.217040917673,"no","OS11G0226966","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R8J5]","Hypothetical conserved gene. (Os11t0226966-00)",11,6646291,6647404]
["OS09T0521400-01",0.00109363693023666,0.0503204751394434,-0.38182094333236805,"OS09G0521400",null,2619.4182314612,2649.42206520495,1980.64581232278,2063.02206464669,"no","OS09G0521400","Os09g0521400 protein [Source:UniProtKB/TrEMBL;Acc:Q64MA9]","Similar to HMG-CoA synthase. (Os09t0521400-01)",9,20367529,20371141,"GO:0016126;GO:0008202;GO:0006694;GO:0004421;GO:0008299;GO:0006629;GO:0008152;GO:0003824;GO:0016740","sterol biosynthetic process;steroid metabolic process;steroid biosynthetic process;hydroxymethylglutaryl-CoA synthase activity;isoprenoid biosynthetic process;lipid metabolic process;metabolic process;catalytic activity;transferase activity","The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators];Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+). [EC:2.3.3.10, RHEA:10191];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0649100-01",0.00109724611325858,0.0504106214319944,-0.7106629478369221,"OS01G0649100",null,4549.39353963505,5250.70724913525,2844.09156910681,3144.15505182998,"no","OS01G0649100","Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q94JA2]","Malate dehydrogenase. (Os01t0649100-01);Malate dehydrogenase. (Os01t0649100-02)",1,26190754,26194403,"GO:0006099;GO:0030060;GO:0016615;GO:0006108;GO:0016616;GO:0055114;GO:0016491;GO:0005975;GO:0019752;GO:0003824","tricarboxylic acid cycle;L-malate dehydrogenase activity;malate dehydrogenase activity;malate metabolic process;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process;carboxylic acid metabolic process;catalytic activity","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. [EC:1.1.1.37];Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. [GOC:mah, ISBN:0582227089];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS03T0365900-01",1.10430590070637E-3,0.050582839397872496,0.6543789660654621,"OS03G0365900",null,1334.20338052884,1163.14319765382,1880.18366362141,2050.48570759525,"no","OS03G0365900","Os03g0365900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VYH5]","Similar to GDSL-like Lipase/Acylhydrolase family protein. (Os03t0365900-01)",3,14295600,14297898,"GO:0016788;GO:0016787","hydrolase activity, acting on ester bonds;hydrolase activity","Catalysis of the hydrolysis of any ester bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS10T0109300-02",1.1036353881410201E-3,0.050582839397872496,-2.7600729353032403,"OS10G0109300",null,3587.36470451392,3812.281173265,362.097702380716,730.213009419084,"no","OS10G0109300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q7XHB3]","Similar to Peroxidase (EC 1.11.1.7). (Os10t0109300-01);Similar to Peroxidase 54. (Os10t0109300-02)",10,655625,658866,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS07T0142100-00",1.1101651110191101E-3,0.0507750965147545,3.09024055759597,"OS07G0142100",null,7.1347774359830805,10.2933026341046,51.7123685375892,96.7118080285515,"no","OS07G0142100","Os07g0142100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KMX3]","Conserved hypothetical protein. (Os07t0142100-00)",7,2175193,2175719]
["OS07T0650600-03",1.11234685762424E-3,0.0507988358656739,-0.6287810966509181,"OS07G0650600",null,786.367714021531,838.825688098609,493.696740964859,557.352540699052,"no","OS07G0650600","BLE2 protein [Source:UniProtKB/TrEMBL;Acc:Q8H493]","Similar to BLE2 protein. (Os07t0650600-02);Hypothetical conserved gene. (Os07t0650600-03);BLE2 protein. (Os07t0650600-04)",7,27197715,27201395,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS01T0847700-01",0.00111427241778286,0.0508108222508982,0.6396897390918731,"OS01G0847700",null,548.569635615355,636.546542689937,896.785576790952,949.618397217067,"no","OS01G0847700","Os01g0847700 protein [Source:UniProtKB/TrEMBL;Acc:Q941T6]","Aldo-keto reductase, Detoxification of reactive aldehydes, Abiotic stress tolerance (Os01t0847700-01)",1,36410714,36414587,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS01T0881900-01",1.1185276938738401E-3,0.0509288496322409,0.5217655278480471,"OS01G0881900",null,997.849587118205,938.749200230336,1467.46042038744,1312.93606050882,"no","OS01G0881900","Os01g0881900 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZQ3]","Leucine-rich repeat, cysteine-containing containing protein. (Os01t0881900-01)",1,38275062,38279030]
["OS03T0121300-02",0.00112148608608827,0.0509875638425129,-1.82382855680292,"OS03G0121300",null,204.756609860646,186.637905222333,53.4955536595751,57.0617994868953,"no","OS03G0121300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q8LMR6]","Similar to Peroxidase 1. (Os03t0121300-01);Similar to Peroxidase 5. (Os03t0121300-02)",3,1178482,1180131,"GO:0098869;GO:0055114;GO:0006979;GO:0020037;GO:0004601;GO:0009506;GO:0009505;GO:0009664;GO:0042744;GO:0046872;GO:0016491;GO:0005576","cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding;peroxidase activity;plasmodesma;plant-type cell wall;plant-type cell wall organization;hydrogen peroxide catabolic process;metal ion binding;oxidoreductase activity;extracellular region","Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0706900-00",0.00113704118895949,0.0514650109705043,-1.3359083672504801,"OS02G0706900",null,351.642602202023,358.206931666839,117.084608009636,164.117007563603,"no","OS02G0706900","Os02g0706900 protein [Source:UniProtKB/TrEMBL;Acc:Q8S3R0]","Alpha/beta hydrolase family protein. (Os02t0706900-00)",2,29224218,29226240,"GO:0016787;GO:0016020;GO:0016021","hydrolase activity;membrane;integral component of membrane","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0530800-00",1.13626781429822E-3,0.0514650109705043,-1.47638001238934,"OS09G0530800",null,188.889642264795,208.309797380362,67.3475930757133,75.4016974369561,"no","OS09G0530800","Os09g0530800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQ21]","Similar to predicted protein. (Os09t0530800-00)",9,20794568,20797868,"GO:0004252;GO:0006508","serine-type endopeptidase activity;proteolysis","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS11T0133850-00",1.13455847396986E-3,0.0514650109705043,1.20703614512578,"OS11G0133850",null,137.902205161315,140.392384798544,275.304546533362,367.174323790228,"no","OS11G0133850","Os11g0133850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XYK0]","Hypothetical gene. (Os11t0133850-00)",11,1564325,1564862]
["OS01T0292200-03",0.0011422730062014,0.0515490766402736,-0.62012692597165,"OS01G0292200","CIPK1",1040.89540487377,1134.04168708779,671.628031762205,743.415804859137,"no","OS01G0292200","Non-specific serine/threonine protein kinase [Source:UniProtKB/TrEMBL;Acc:B3GLZ5]","Serine/threonine protein kinase domain containing protein. (Os01t0292200-01);Similar to CBL-interacting protein kinase 1. (Os01t0292200-02);Similar to CBL-interacting protein kinase 1. (Os01t0292200-03)",1,10622951,10627532,"GO:0007165;GO:0006468;GO:0005524;GO:0004672;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0000166;GO:0016740","signal transduction;protein phosphorylation;ATP binding;protein kinase activity;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;nucleotide binding;transferase activity","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0432333-01",0.0011416421198685,0.0515490766402736,1.82977454826065,"OS07G0432333",null,1643.2929849588,2613.01344343185,7406.62050586182,7723.76213647116,"no","OS07G0432333","Os07g0432333 protein [Source:UniProtKB/TrEMBL;Acc:Q6YTL9]","Similar to Thionin-like peptide. (Os07t0432333-01)",7,14303299,14304162]
["OS04T0106300-01",1.1473493395811301E-3,0.0517017950190011,0.654168353107887,"OS04G0106300","ARG1",293.545128794732,296.447115862211,448.824330703605,479.651492343624,"no","OS04G0106300","Arginase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q7X7N2]","Arginine hydrolysis enzyme, Arginase, Panicle development and grain production (Os04t0106300-01)",4,396563,400802,"GO:0016813;GO:0005739;GO:0046872;GO:0016787;GO:0004053;GO:0000050;GO:0006525;GO:0030145;GO:0006527","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines;mitochondrion;metal ion binding;hydrolase activity;arginase activity;urea cycle;arginine metabolic process;manganese ion binding;arginine catabolic process","Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea. [EC:3.5.3.1];The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate. [GOC:pde, GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [CHEBI:29016, GOC:go_curators];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [CHEBI:29016, GOC:go_curators]"]
["OS01T0200700-01",0.00114991049740945,0.051740891777398296,-1.99255029117438,"OS01G0200700","MT3A",1045.75452133123,861.549430474552,294.662930157584,184.631633509053,"no","OS01G0200700","Metallothionein-like protein 3A [Source:UniProtKB/Swiss-Prot;Acc:A1YTM8]","Similar to Metallothionein-like protein type 3 (MT-3) (MWMT3). (Os01t0200700-01)",1,5478545,5479749,"GO:0008270;GO:0005507;GO:0055114;GO:0046872;GO:0016491","zinc ion binding;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS07T0164800-01",1.1539727482037302E-3,0.0518473167692947,0.39762683826828105,"OS07G0164800",null,1562.51625848029,1642.81110040309,2090.93595803875,2131.56732442727,"no","OS07G0164800","Neurofilament triplet M protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8LHS0]","Conserved hypothetical protein. (Os07t0164800-01)",7,3469431,3471635]
["OS12T0632700-01",0.00116150573044762,0.0521091381448395,0.444632902457512,"OS12G0632700",null,5173.73289500716,5507.94623950935,6955.80142083913,7581.61961726857,"no","OS12G0632700","Malate dehydrogenase, glyoxysomal [Source:UniProtKB/Swiss-Prot;Acc:Q42972]","Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37). (Os12t0632700-01)",12,27094649,27099336,"GO:0009514;GO:0005777;GO:0006099;GO:0030060;GO:0016615;GO:0006108;GO:0016616;GO:0055114;GO:0016491;GO:0005975;GO:0006097;GO:0019752;GO:0003824","glyoxysome;peroxisome;tricarboxylic acid cycle;L-malate dehydrogenase activity;malate dehydrogenase activity;malate metabolic process;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process;glyoxylate cycle;carboxylic acid metabolic process;catalytic activity","A specialized form of peroxisome that contains the enzymes of the glyoxylate pathway. The glyoxysome is found in some plant cells, notably the cells of germinating seeds. [GOC:dhl, ISBN:0140514031];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. [EC:1.1.1.37];Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. [GOC:mah, ISBN:0582227089];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. [ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0714100-01",1.1692242836596602E-3,0.0523512328802466,-0.5482084521006411,"OS02G0714100",null,2323.89893629163,2574.35498878955,1598.20489933153,1751.55830096154,"no","OS02G0714100","Os02g0714100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZFU0]","Diacylglycerol acyltransferase family protein. (Os02t0714100-01)",2,29599167,29601738,"GO:0016746;GO:0016747;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0376200-01",1.17032901470308E-3,0.0523512328802466,-1.3343312498978501,"OS10G0376200",null,832.32139570011,662.722495784683,260.214478482884,332.683831596505,"no","OS10G0376200","Leucine Rich Repeat family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XF95]","Leucine-rich repeat, typical subtype containing protein. (Os10t0376200-01)",10,11981020,11986066]
["OS04T0542800-01",1.1746688920613502E-3,0.0524685438454072,0.823351074489394,"OS04G0542800","YSL16",2420.70827097822,2055.25570621183,3708.92254588734,4211.34683763669,"no","OS04G0542800","Probable metal-nicotianamine transporter YSL16 [Source:UniProtKB/Swiss-Prot;Acc:Q7XN54]","Transporter of the Copper-Nicotianamine Complex, Fe(III)-deoxymugineic acid transporter, Copper distribution, Allocation of iron (Os04t0542800-01)",4,27183978,27187746,"GO:0048316;GO:0005886;GO:0006810;GO:0055085;GO:0016020;GO:0016021;GO:0051980;GO:0010039;GO:0015688","seed development;plasma membrane;transport;transmembrane transport;membrane;integral component of membrane;iron-nicotianamine transmembrane transporter activity;response to iron ion;iron chelate transport","The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm];The directed movement of iron chelates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. [GOC:ai]"]
["OS03T0265900-01",0.00117956377054317,0.052533574807048004,1.30140613304937,"OS03G0265900",null,175.725383846049,183.654890700805,372.772131914094,512.988795283349,"no","OS03G0265900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10NL7]","Conserved hypothetical protein. (Os03t0265900-01)",3,8789242,8790378]
["OS09T0513100-02",1.17820328803764E-3,0.052533574807048004,-0.7703252700894431,"OS09G0513100",null,520.314679442585,510.167469112935,329.634115987317,274.522394694613,"no","OS09G0513100","Os09g0513100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPT6]","Similar to Phospholipase A1. (Os09t0513100-01);Similar to phospholipase A1. (Os09t0513100-02)",9,19965263,19970151,"GO:0016746;GO:0008374;GO:0006629;GO:0016740","transferase activity, transferring acyl groups;O-acyltransferase activity;lipid metabolic process;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule. [GOC:ai];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0169200-01",1.1898011607597702E-3,0.0528677984742064,-1.04239672231494,"OS05G0169200",null,196.716006449248,187.338107940703,98.5462117414437,87.9198254805014,"no","OS05G0169200","Autophagy-related protein 18e [Source:Projected from Arabidopsis thaliana (AT5G05150) UniProtKB/Swiss-Prot;Acc:Q9FHK8]","WD40 repeat-like domain containing protein. (Os05t0169200-01)",5,4144983,4148965,"GO:0005829;GO:0019898;GO:0034497;GO:0000422;GO:0044804;GO:0034045;GO:0032266;GO:0080025;GO:0006497","cytosol;extrinsic component of membrane;protein localization to pre-autophagosomal structure;mitophagy;nucleophagy;pre-autophagosomal structure membrane;phosphatidylinositol-3-phosphate binding;phosphatidylinositol-3,5-bisphosphate binding;protein lipidation","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. [GOC:dos, GOC:jl, GOC:mah];Any process in which a protein is transported to, or maintained at, the pre-autophagosomal structure (PAS). [GOC:rb];The autophagic process in which mitochondria are delivered to the vacuole and degraded in response to changing cellular conditions. [GOC:autophagy, PMID:15798367, PMID:19289147, PMID:23065344];A selective form of autophagy, by which damaged or non-essential parts of the nucleus, or even an entire nucleus is degraded. [GOC:autophagy, GOC:jl, PMID:24013549];A cellular membrane associated with the pre-autophagosomal structure. [GOC:mah, GOC:rph, PMID:16874040, PMID:17382324];Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position. [GOC:bf, PMID:10209156, PMID:11395417, PMID:11557775];Interacting selectively and non-covalently with phosphatidylinositol-3,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 5' positions. [GOC:bf, PMID:18397324];The covalent attachment of lipid groups to an amino acid in a protein. [GOC:jl]"]
["OS11T0168250-00",0.00119052910939559,0.0528677984742064,-0.458125749525197,"OS11G0168250",null,1960.66682343346,1933.0521596503,1390.90349873813,1443.45651242938,"no","OS11G0168250","Os11g0168250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSH6]","Hypothetical gene. (Os11t0168250-00)",11,3296345,3296924]
["OS01T0127200-01",1.19371995126522E-3,0.0529325572584253,-3.27409120118147,"OS01G0127200","LPR5",484.026410750125,312.209223838457,26.9375470877963,55.3704341534191,"no","OS01G0127200","Multicopper oxidase LPR1 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:A2ZNT5]","Multicopper oxidase, Maintenance of Pi homeostasis (Os01t0127200-01)",1,1497241,1500606,"GO:0005789;GO:0005783;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0016020","endoplasmic reticulum membrane;endoplasmic reticulum;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0136400-01",1.2226838719224102E-3,0.0530794902756506,0.493977541816745,"OS01G0136400",null,1371.43471620018,1216.75713533404,1787.06586198138,1857.94244861449,"no","OS01G0136400","Os01g0136400 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZC67]","Protein kinase, core domain containing protein. (Os01t0136400-01)",1,1957847,1967451,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0901000-02",0.0012101044747996,0.0530794902756506,-0.542124482807888,"OS01G0901000",null,1066.83350707848,1202.5279192432,783.429571502153,775.074488289222,"no","OS01G0901000","RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q5N8V2]","Similar to Arm repeat-containing protein. (Os01t0901000-01);Similar to predicted protein. (Os01t0901000-02)",1,39222268,39226573,"GO:0016567;GO:0004842;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0745100-01",1.2219766819381301E-3,0.0530794902756506,-1.44661198518052,"OS02G0745100","NIP2-1",48917.0533550194,36497.9924800079,13969.1694406163,17368.0730801982,"no","OS02G0745100","Aquaporin NIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z2T3]","Aquaporin NIP III subfamily protein, Aquaporin, Silicon influx transporter, Arsenic species (As) uptake, Arsenite efflux, Selenite (Se) uptake, Water transport (Os02t0745100-01)",2,31266328,31269935,"GO:0034220;GO:0006833;GO:0015250;GO:0005887;GO:0005886;GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0015115;GO:0015708;GO:0048226;GO:0035445","ion transmembrane transport;water transport;water channel activity;integral component of plasma membrane;plasma membrane;transport;transporter activity;membrane;integral component of membrane;silicate transmembrane transporter activity;silicate transport;Casparian strip;borate transmembrane transport","A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of silicates from one side of a membrane to the other. Silicates are the salts of silicic acids, and are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates. [CHEBI:48123, GOC:ai];The directed movement of silicates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Silicates are the salts of silicic acids, and are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates. [GOC:ai, GOC:krc, http://www.onelook.com];Region of plant cell wall specialised to act as a seal to prevent back leakage of secreted material (analogous to tight junction between epithelial cells). Found particularly where root parenchymal cells secrete solutes into xylem vessels. The barrier is composed of suberin; a fatty substance, containing long chain fatty acids and fatty esters, also found in the cell walls of cork cells (phellem) in higher plants. [GOC:jid];The directed movement of borate across a membrane by means of some agent such as a transporter or pore. Borate is the anion (BO3)3-; boron is a group 13 element, with properties which are borderline between metals and non-metals. [CHEBI:22908, GOC:curators]"]
["OS03T0583900-01",1.2186622806395302E-3,0.0530794902756506,-10.3164275172915,"OS03G0583900","DCL2A",220.036001999165,206.718061656561,0.0253135061192818,0.309361696095099,"no","OS03G0583900","Endoribonuclease Dicer homolog 2a [Source:UniProtKB/Swiss-Prot;Acc:Q10HL3]","DEAD-like helicase, N-terminal domain containing protein. (Os03t0583900-01);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-02);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-03);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-04)",3,21500778,21515569,"GO:0016891;GO:0003723;GO:0090502;GO:0003676;GO:0005524;GO:0090501;GO:0004525;GO:0006396;GO:0016442;GO:0030422;GO:0005634;GO:0005737;GO:0004519;GO:0004518;GO:0031047;GO:0004386;GO:0090305;GO:0046872;GO:0016787;GO:0000166","endoribonuclease activity, producing 5'-phosphomonoesters;RNA binding;RNA phosphodiester bond hydrolysis, endonucleolytic;nucleic acid binding;ATP binding;RNA phosphodiester bond hydrolysis;ribonuclease III activity;RNA processing;RISC complex;production of siRNA involved in RNA interference;nucleus;cytoplasm;endonuclease activity;nuclease activity;gene silencing by RNA;helicase activity;nucleic acid phosphodiester bond hydrolysis;metal ion binding;hydrolase activity;nucleotide binding","Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. [GOC:ai];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. [PMID:11157775, PMID:15242644];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation. [PMID:10749213, PMID:15145345];Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. [GOC:mah, PMID:11524674];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS04T0483500-01",1.2201394498607902E-3,0.0530794902756506,-1.5200171854881002,"OS04G0483500",null,818.460897299202,923.309246279179,247.82908695373,359.494397520272,"no","OS04G0483500","OSJNBa0081L15.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQF8]","Beta-ketoacyl-CoA reductase, Cuticular wax biosynthesis, Fatty acid elongation (Os04t0483500-01)",4,24175649,24178952,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0551100-01",1.2008670383527801E-3,0.0530794902756506,0.7593534148873781,"OS05G0551100",null,194.677498610395,198.660740838218,347.35100376192,318.465145629372,"no","OS05G0551100","Os05g0551100 protein [Source:UniProtKB/TrEMBL;Acc:Q6AUD7]","Conserved hypothetical protein. (Os05t0551100-01)",5,27383401,27387244]
["OS06T0625700-01",0.0012100759458884,0.0530794902756506,1.08095726894692,"OS06G0625700","CSLA9",76.7067456729751,79.9520428611493,170.121999159157,161.280153987802,"no","OS06G0625700","Probable mannan synthase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q67VS7]","Glycosyl transferase, family 2 domain containing protein. (Os06t0625700-01)",6,25231214,25235848,"GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0071555;GO:0016740","transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0681300-02",1.2034171525100602E-3,0.0530794902756506,-0.688137011668527,"OS06G0681300",null,406.417092328457,436.232242269985,259.644498002021,263.34985610029,"no","OS06G0681300","Os06g0681300 protein [Source:UniProtKB/TrEMBL;Acc:Q653X9]","Hypothetical conserved gene. (Os06t0681300-01);PAK-box/P21-Rho-binding domain containing protein. (Os06t0681300-02)",6,28390431,28396001,"GO:0006857;GO:0006810;GO:0005215;GO:0016020;GO:0016021","oligopeptide transport;transport;transporter activity;membrane;integral component of membrane","The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0714300-01",1.2167696175206702E-3,0.0530794902756506,-0.490686944520752,"OS06G0714300",null,957.079430341159,1029.33026341046,686.896366989865,726.803890638812,"no","OS06G0714300","Auxin-induced protein-like [Source:UniProtKB/TrEMBL;Acc:Q5Z7T1]","Auxin responsive SAUR protein family protein. (Os06t0714300-01)",6,30314770,30315668,"GO:0009733","response to auxin","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]"]
["OS07T0409900-01",1.2230937795907999E-3,0.0530794902756506,-0.39736293540009,"OS07G0409900","CPK18",2011.6575056341,2128.22537266376,1583.64440747783,1559.54022098256,"no","OS07G0409900","Calcium-dependent protein kinase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q0D715]","Plasma membrane-associated calcium-dependent protein kinase, Direct phosphorylation and activation of MAPK, Negative reguration of rice immunity (Os07t0409900-01);Similar to Calcium-dependent protein kinase. (Os07t0409900-02)",7,12795040,12803562,"GO:0046777;GO:0009738;GO:0010857;GO:0009931;GO:0005516;GO:0004683;GO:0050832;GO:0005515;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0006952;GO:0005886;GO:0016310;GO:0016301;GO:0005509;GO:0046872;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016740","protein autophosphorylation;abscisic acid-activated signaling pathway;calcium-dependent protein kinase activity;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;defense response to fungus;protein binding;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;defense response;plasma membrane;phosphorylation;kinase activity;calcium ion binding;metal ion binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;transferase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Catalysis of the reaction: a protein + ATP = a phosphoprotein + ADP. This reaction requires the presence of calcium. [GOC:dph, GOC:tb];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0694000-02",1.20721258839964E-3,0.0530794902756506,-0.407097653213123,"OS07G0694000",null,3471.96041084427,3767.88278935625,2730.09322592162,2729.75481586542,"no","OS07G0694000","Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:Q6Z3Y9]","Phosphoinositide phospholipase C, Salt tolerance (Os07t0694000-01);Similar to Phosphoinositide-specific phospholipase C. (Os07t0694000-02)",7,29545847,29548978,"GO:0007165;GO:0004871;GO:0004435;GO:0016042;GO:0006629;GO:0008081;GO:0005622;GO:0035556;GO:0016787","signal transduction;signal transducer activity;phosphatidylinositol phospholipase C activity;lipid catabolic process;lipid metabolic process;phosphoric diester hydrolase activity;intracellular;intracellular signal transduction;hydrolase activity","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+). [EC:3.1.4.11, RHEA:23915];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS08T0409900-01",1.2225565460849501E-3,0.0530794902756506,-2.12144626621842,"OS08G0409900",null,136.580025203105,152.340878984747,24.3926266686742,42.006138840684,"no","OS08G0409900","Os08g0409900 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZAK1]","Major facilitator superfamily protein. (Os08t0409900-01)",8,19632714,19635614,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0480000-01",1.2044053856259801E-3,0.0530794902756506,1.0878886664816,"OS08G0480000",null,80.213304395738,74.8090596396377,162.73683446348,166.782935669217,"no","OS08G0480000","Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:Q6ZB84]","Multi antimicrobial extrusion protein MatE family protein. (Os08t0480000-01)",8,23712632,23717520,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0424401-00",1.20140127586554E-3,0.0530794902756506,0.401028661950858,"OS09G0424401",null,2695.12778072815,2741.70942352747,3560.90972217815,3618.15692994564,"no","OS09G0424401","Os09g0424401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQU0]","Hypothetical gene. (Os09t0424401-00)",9,15385753,15387645]
["OS12T0611100-01",1.2176523852628401E-3,0.0530794902756506,0.52918135055595,"OS12G0611100",null,622.76414476938,571.278296192803,883.988790472752,839.145889863897,"no","OS12G0611100","Os12g0611100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCZ3]","Similar to serine/threonine-protein kinase receptor. (Os12t0611100-01)",12,25820882,25824699,"GO:0004674;GO:0005886;GO:0006629;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0008152;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;lipid metabolic process;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;metabolic process;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0269800-00",1.2273508046615701E-3,0.0531371220340033,-1.28950681195295,"OS01G0269800",null,128.425993847695,124.548961872665,49.7609584040953,53.7287822380842,"no","OS01G0269800","Os01g0269800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V108]","NB-ARC domain containing protein. (Os01t0269800-00)",1,9316276,9318060,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS05T0525200-00",0.00122790024077004,0.0531371220340033,-0.5768713464477561,"OS05G0525200",null,610.387161800852,664.353333537398,432.588553163151,422.017970248149,"no","OS05G0525200",null,"Hypothetical protein. (Os05t0525200-00)",5,26143266,26147537]
["OS02T0725000-01",1.2308241518455701E-3,0.0531732095848154,0.8868849899990431,"OS02G0725000",null,403.383280182561,475.487853696229,750.10187088597,875.088293029768,"no","OS02G0725000","Os02g0725000 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z5K6]","Similar to Protein kinase G11A (EC 2.7.1.-) (Fragment). (Os02t0725000-01)",2,30135368,30138655,"GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0005886;GO:0006468;GO:0005524;GO:0004672","intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;plasma membrane;protein phosphorylation;ATP binding;protein kinase activity","The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS04T0685300-02",1.23221499037868E-3,0.0531732095848154,-0.701490975615584,"OS04G0685300",null,1424.91697935776,1464.73696483308,809.835205399982,967.118080285515,"no","OS04G0685300","OSJNBa0088H09.15 protein [Source:UniProtKB/TrEMBL;Acc:Q7XPU1]","Harpin-induced 1 domain containing protein. (Os04t0685300-02)",4,35001018,35002142,"GO:0009506;GO:0004871;GO:0046658;GO:0006952;GO:0007165;GO:0016020;GO:0016021","plasmodesma;signal transducer activity;anchored component of plasma membrane;defense response;signal transduction;membrane;integral component of membrane","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0452500-02",0.0012341764228126,0.0531827335257693,-0.37692256049069706,"OS07G0452500",null,2667.06489136536,2712.62100849252,2126.93472863046,2015.84576594128,"no","OS07G0452500","Os07g0452500 protein [Source:UniProtKB/TrEMBL;Acc:Q7EY59]","Similar to ORMDL family protein. (Os07t0452500-01);ORMDL family protein. (Os07t0452500-02)",7,15602028,15604564,"GO:0005789;GO:0016021;GO:0016020;GO:0090156;GO:1900060;GO:0035339","endoplasmic reticulum membrane;integral component of membrane;membrane;cellular sphingolipid homeostasis;negative regulation of ceramide biosynthetic process;SPOTS complex","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Any biological process involved in the maintenance of an internal steady state of sphingolipids at the level of the cell. [GOC:ascb_2009, GOC:dph, GOC:tb];Any process that stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process. [GOC:TermGenie, PMID:15302821];A multiprotein complex at least composed of serine palmitoyltransferases and ORM proteins (known as ORMDL proteins in mammals and other higher vertebrates) that plays a key role in sphingolipid homeostasis. [PMID:20182505]"]
["OS02T0626100-04",1.2407311468401602E-3,0.0533898845045924,-1.69679530564812,"OS02G0626100","PAL",8067.30648183574,12174.719783624,2959.62674283312,3284.44235732281,"no","OS02G0626100","Phenylalanine ammonia-lyase [Source:UniProtKB/Swiss-Prot;Acc:P14717]","Similar to Phenylalanine ammonia-lyase. (Os02t0626100-01);Similar to Phenylalanine ammonia-lyase. (Os02t0626100-02);Similar to Phenylalanine ammonia-lyase. (Os02t0626100-03);Non-protein coding transcript. (Os02t0626100-04)",2,24973448,24977287,"GO:0016829;GO:0003824;GO:0006559;GO:0016841;GO:0005737;GO:0009800;GO:0009698;GO:0045548","lyase activity;catalytic activity;L-phenylalanine catabolic process;ammonia-lyase activity;cytoplasm;cinnamic acid biosynthetic process;phenylpropanoid metabolic process;phenylalanine ammonia-lyase activity","Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. [GOC:go_curators];Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. [EC:4.3.-.-, GOC:krc];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid. [GOC:jl];The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. [GOC:jl];Catalysis of the reaction: L-phenylalanine = NH(4)(+) + trans-cinnamate. [RHEA:21387]"]
["OS12T0138900-02",1.24293114960982E-3,0.0534093283866095,0.46401392714835105,"OS12G0138900",null,1053.86256406065,987.698493130211,1440.50158878753,1375.5751380701,"no","OS12G0138900","2-isopropylmalate synthase B, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QXY9]","Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-01);Similar to Plastid isopropylmalate synthase (Fragment). (Os12t0138900-02)",12,1888943,1894864,"GO:0003852;GO:0009098;GO:0046912;GO:0019752;GO:0003824;GO:0016740","2-isopropylmalate synthase activity;leucine biosynthetic process;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;carboxylic acid metabolic process;catalytic activity;transferase activity","Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+). [EC:2.3.3.13, RHEA:21527];The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer. [GOC:jl];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0171300-01",1.24562784877703E-3,0.053450030949207396,-1.34005256113822,"OS03G0171300","ILI6",612.571605575119,638.184763314483,204.898064016863,289.158537135871,"no","OS03G0171300","Transcription factor ILI6 [Source:UniProtKB/Swiss-Prot;Acc:Q0DUR2]","Similar to DNA-binding protein-like. (Os03t0171300-01)",3,3814378,3823216,"GO:0080113;GO:0009742;GO:0040008;GO:0005515;GO:0046983;GO:0005634;GO:0006355;GO:0006351","regulation of seed growth;brassinosteroid mediated signaling pathway;regulation of growth;protein binding;protein dimerization activity;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of growth of the seed of an plant. [PMID:19141706];A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0437600-02",1.2475953457693999E-3,0.053459373077064005,-0.539207108445622,"OS04G0437600",null,726.625810763052,717.973263965602,507.512586921454,486.586829480368,"no","OS04G0437600","Os04g0437600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JD14]","Mitogen activated protein kinase kinase kinase 3 domain containing protein. (Os04t0437600-01);Similar to H0315A08.7 protein. (Os04t0437600-02)",4,21752568,21758576,"GO:0007346;GO:0004674;GO:0005737;GO:0006468;GO:0005524;GO:0004672;GO:0023014;GO:0031098;GO:0032147","regulation of mitotic cell cycle;protein serine/threonine kinase activity;cytoplasm;protein phosphorylation;ATP binding;protein kinase activity;signal transduction by protein phosphorylation;stress-activated protein kinase signaling cascade;activation of protein kinase activity","Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals. [GOC:mah];Any process that initiates the activity of an inactive protein kinase. [GOC:mah]"]
["OS04T0472200-01",1.25753327991386E-3,0.0536594368267155,-1.02047854931632,"OS04G0472200",null,200.793022126952,215.130025052785,95.6190965412028,109.411338375735,"no","OS04G0472200","OSJNBa0089K21.15 protein [Source:UniProtKB/TrEMBL;Acc:Q7X7S7]","Similar to H0418A01.11 protein. (Os04t0472200-01)",4,23599540,23600705]
["OS04T0654600-01",1.2542807058266402E-3,0.0536594368267155,-0.779200927638063,"OS04G0654600",null,434.202169675542,475.550581695631,285.881584556861,244.221737445837,"no","OS04G0654600","Os04g0654600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9G2]","Protein kinase, core domain containing protein. (Os04t0654600-01)",4,33386622,33391644,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0580900-01",1.25686650787559E-3,0.0536594368267155,-1.42759919568642,"OS10G0580900",null,640.198751285879,826.118799266777,255.352286547332,289.749810816004,"no","OS10G0580900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7XBR1]","Conserved hypothetical protein. (Os10t0580900-01);Conserved hypothetical protein. (Os10t0580900-02);Non-protein coding transcript. (Os10t0580900-03)",10,23192471,23194991]
["OS04T0410400-01",0.00125984297859655,0.053683016293001096,-0.720626552373387,"OS04G0410400",null,377.123950187677,424.084068525108,239.047741353007,247.152398295187,"no","OS04G0410400","OSJNBa0073L04.2 protein [Source:UniProtKB/TrEMBL;Acc:Q7XVG2]","Root cap family protein. (Os04t0410400-01)",4,20280360,20281976]
["OS01T0862800-01",1.26276334864196E-3,0.053732515080374896,2.28037443198984,"OS01G0862800",null,15.6620319927795,17.4986144779778,62.760145442778,98.3356085887896,"no","OS01G0862800","NAC transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q94CW0]","NAC (NAM ATAF1/2 CUC2) transcription factor, Early and transient regulator of abiotic stress responses (Os01t0862800-01)",1,37334397,37336207,"GO:0016459;GO:0003774;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0005524;GO:0000166","myosin complex;motor activity;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;ATP binding;nucleotide binding","A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes. [GOC:mah, http://www.mrc-lmb.cam.ac.uk/myosin/Review/Reviewframeset.html, ISBN:96235764];Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS05T0567100-01",1.2650503237296902E-3,0.0537549617393458,0.39629005371069304,"OS05G0567100",null,8124.39576677486,8204.87929012363,10662.7373891423,10828.5334687099,"no","OS05G0567100","Aspartic proteinase oryzasin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42456]","Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-). (Os05t0567100-01);Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-). (Os05t0567100-02);Similar to Phytepsin. (Os05t0567100-03)",5,28231900,28237359,"GO:0005764;GO:0006665;GO:0004190;GO:0006629;GO:0006508;GO:0016787;GO:0008233;GO:0005773;GO:0030163","lysosome;sphingolipid metabolic process;aspartic-type endopeptidase activity;lipid metabolic process;proteolysis;hydrolase activity;peptidase activity;vacuole;protein catabolic process","A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah]"]
["OS01T0691600-02",0.00127739403975493,0.0539583214845452,0.46926196890941,"OS01G0691600",null,936.752580451405,892.935254623346,1298.62490774491,1234.39690160624,"no","OS01G0691600","Os01g0691600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JK78]","Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2). (Os01t0691600-01);Similar to XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP-dependent helicase. (Os01t0691600-02)",1,28545585,28553746,"GO:0032508;GO:0004003;GO:0006367;GO:0006289;GO:0016787;GO:0003677;GO:0005524","DNA duplex unwinding;ATP-dependent DNA helicase activity;transcription initiation from RNA polymerase II promoter;nucleotide-excision repair;hydrolase activity;DNA binding;ATP binding","The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix. [EC:3.6.1.3, GOC:jl];Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. [GOC:mah, GOC:txnOH];A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). [PMID:10197977];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0769400-01",1.2722646626633501E-3,0.0539583214845452,-0.38553658034686206,"OS03G0769400",null,1892.75452837437,1942.34620705553,1445.994908919,1489.75259841961,"no","OS03G0769400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q75KA7]","BTB/POZ fold domain containing protein. (Os03t0769400-01)",3,31853946,31857784]
["OS04T0659800-00",1.27759593439491E-3,0.0539583214845452,1.13295274463019,"OS04G0659800",null,89.7261514147886,89.4363895254906,174.015960670208,218.900273445354,"no","OS04G0659800","Os04g0659800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFV3]","Similar to OSIGBa0132E09-OSIGBa0108L24.20 protein. (Os04t0659800-00)",4,33658425,33664069,"GO:0003333;GO:0015171;GO:0005886;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;plasma membrane;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0136900-00",1.2782232425740802E-3,0.0539583214845452,0.486299965253887,"OS12G0136900","ACA9",1108.90599606665,1041.1504725267,1573.96898192878,1437.93236506407,"no","OS12G0136900","Probable calcium-transporting ATPase 9, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q2QY12]","Similar to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4). (Os12t0136900-00)",12,1783558,1789565,"GO:0005388;GO:0043231;GO:0005887;GO:0005516;GO:0006816;GO:0070588;GO:0099132;GO:0046872;GO:0006810;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","calcium-transporting ATPase activity;intracellular membrane-bounded organelle;integral component of plasma membrane;calmodulin binding;calcium ion transport;calcium ion transmembrane transport;ATP hydrolysis coupled cation transmembrane transport;metal ion binding;transport;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). [EC:3.6.3.8];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0605800-03",1.2786666913724401E-3,0.0539583214845452,0.45941160129319,"OS12G0605800","MCCA",808.432389166592,868.854327528953,1173.65156701622,1132.58566925577,"no","OS12G0605800","Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q2QMG2]","Similar to 3-methylcrotonyl CoA carboxylase biotin-containing subunit (Fragment). (Os12t0605800-01);Similar to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial. (Os12t0605800-02);Similar to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial. (Os12t0605800-03)",12,25576492,25581974,"GO:0005829;GO:0004075;GO:0003824;GO:0005759;GO:0006631;GO:0008152;GO:0006629;GO:0016874;GO:0005737;GO:0006633;GO:0005739;GO:0009536;GO:0046872;GO:0005524;GO:0000166;GO:0006552;GO:0004485;GO:0003989;GO:2001295","cytosol;biotin carboxylase activity;catalytic activity;mitochondrial matrix;fatty acid metabolic process;metabolic process;lipid metabolic process;ligase activity;cytoplasm;fatty acid biosynthetic process;mitochondrion;plastid;metal ion binding;ATP binding;nucleotide binding;leucine catabolic process;methylcrotonoyl-CoA carboxylase activity;acetyl-CoA carboxylase activity;malonyl-CoA biosynthetic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein. [EC:6.3.4.14];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai];Catalysis of the reaction: 3-methylbut-2-enoyl-CoA + ATP + bicarbonate = trans-3-methylglutaconyl-CoA + ADP + 2 H(+) + phosphate. [EC:6.4.1.4, RHEA:13592];Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. [EC:6.4.1.2];The chemical reactions and pathways resulting in the formation of malonyl-CoA, the S-malonyl derivative of coenzyme A. [CHEBI:15531, GOC:yaf, UniPathway:UPA00655]"]
["OS06T0639800-01",1.2868280900829802E-3,0.0542278231837452,6.25599972882957,"OS06G0639800",null,1.03610694985508,0,43.9067280036135,35.2792268654129,"no","OS06G0639800","Os06g0639800 protein [Source:UniProtKB/TrEMBL;Acc:Q67WH9]","Cytochrome P450 family protein. (Os06t0639800-01)",6,26022267,26029240,"GO:0044550;GO:0016020;GO:0016709;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0813500-01",0.00129512015947785,0.05442711294686,0.719441916267289,"OS02G0813500","GRC2",2889.10825278578,2736.26580385518,4225.89143871315,5036.53992690733,"no","OS02G0813500","Glutathione reductase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48642]","Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase). (Os02t0813500-01);Similar to Glutathione reductase, cytosolic. (Os02t0813500-02);Similar to Glutathione reductase, cytosolic. (Os02t0813500-03)",2,34837853,34843851,"GO:0050660;GO:0005623;GO:0045454;GO:0016491;GO:0055114;GO:0006749;GO:0000305;GO:0016668;GO:0004362;GO:0005737;GO:0050661;GO:0009055;GO:0098869;GO:0005777","flavin adenine dinucleotide binding;cell;cell redox homeostasis;oxidoreductase activity;oxidation-reduction process;glutathione metabolic process;response to oxygen radical;oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor;glutathione-disulfide reductase activity;cytoplasm;NADP binding;electron carrier activity;cellular oxidant detoxification;peroxisome","Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen radical stimulus. An oxygen radical is any oxygen species that carries a free electron; examples include hydroxyl radicals and the superoxide anion. [GOC:krc, ISBN:0124325653];Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP. [GOC:jl];Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+. [EC:1.8.1.7, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS03T0223400-01",1.2939705336235902E-3,0.05442711294686,0.96758322990789,"OS03G0223400","GLN1-2",9706.76874350686,8594.75510236178,15975.8842555756,19813.8791602949,"no","OS03G0223400","Glutamine synthetase cytosolic isozyme 1-2 [Source:UniProtKB/Swiss-Prot;Acc:P14654]","Cytosolic glutamine synthetase, Ammonium assimilation (Os03t0223400-01)",3,6457915,6462146,"GO:0004356;GO:0006542;GO:0005737;GO:0016874;GO:0006807;GO:0005524;GO:0000166;GO:0003824","glutamate-ammonia ligase activity;glutamine biosynthetic process;cytoplasm;ligase activity;nitrogen compound metabolic process;ATP binding;nucleotide binding;catalytic activity","Catalysis of the reaction: L-glutamate + ATP + NH(4)(+) = L-glutamine + ADP + 2 H(+) + phosphate. [EC:6.3.1.2, RHEA:16172];The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0628500-01",1.30208564303045E-3,0.0546446711069591,0.35532621016036703,"OS12G0628500",null,2823.27677689467,2815.27266734049,3660.40488816604,3552.84936679292,"no","OS12G0628500","Methionine aminopeptidase [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCB1]","Similar to Methionine aminopeptidase. (Os12t0628500-01)",12,26906313,26910025,"GO:0070084;GO:0070006;GO:0008235;GO:0004177;GO:0005737;GO:0046872;GO:0006508;GO:0016787;GO:0008233;GO:0016020;GO:0016021","protein initiator methionine removal;metalloaminopeptidase activity;metalloexopeptidase activity;aminopeptidase activity;cytoplasm;metal ion binding;proteolysis;hydrolase activity;peptidase activity;membrane;integral component of membrane","The protein modification process in which the translation-initiating methionine or formylmethionine residue is removed from a protein. [GOC:imk, GOC:mah];Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#AMINOPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#EXOPEPTIDASE];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0194000-01",1.3095501683009201E-3,0.0548825469710972,-0.503349619057487,"OS06G0194000",null,6718.50214406685,6788.32270038812,4454.66757385681,5073.95081717471,"no","OS06G0194000","EREBP transcription factor [Source:UniProtKB/TrEMBL;Acc:Q69Y47]","AP2/ERF transcription factor, Drought resistance, Control of lignin biosynthesis (Os06t0194000-01);Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3 homolog) (EREBP-5) (NtERF5). (Os06t0194000-02)",6,4731330,4733911,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0460350-00",1.31463253672739E-3,0.0549448061040973,-0.8999775465893021,"OS04G0460350",null,1440.20578814916,1442.09169903805,682.01784165613,862.591176658697,"no","OS04G0460350","Os04g0460350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WB05]","Similar to predicted protein. (Os04t0460350-00)",4,22980664,22981298,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0460800-03",1.3132778714968101E-3,0.0549448061040973,-0.41887531248848103,"OS12G0460800",null,2714.97802293063,2934.89662961253,2156.18137884565,2069.96737250747,"no","OS12G0460800","Os12g0460800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9T6]","LAMMER kinase-type protein, Positive regulator of disease resistance (Os12t0460800-01);Similar to Lammer-type protein kinase. (Os12t0460800-02);Similar to Lammer-type protein kinase. (Os12t0460800-03)",12,16196141,16199480,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS02T0643800-01",0.0013262427929246,0.054989452300029495,-0.9003604104092261,"OS02G0643800",null,454.587248064065,381.881527725279,206.849474150357,241.291076596487,"no","OS02G0643800","Auxin-responsive protein-like [Source:UniProtKB/TrEMBL;Acc:Q6H664]","Auxin responsive SAUR protein family protein. (Os02t0643800-01)",2,25878905,25879875,"GO:0009733","response to auxin","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]"]
["OS03T0232900-01",0.00132649994583404,0.054989452300029495,-0.5789550430663061,"OS03G0232900","ADIPOR3",615.629367333397,644.360744894945,439.067280036135,404.431197210306,"no","OS03G0232900","Heptahelical transmembrane protein ADIPOR3 [Source:UniProtKB/Swiss-Prot;Acc:Q10PI5]","Hly-III related domain containing protein. (Os03t0232900-01)",3,7046913,7051263,"GO:0009725;GO:0004872;GO:0016021;GO:0016020","response to hormone;receptor activity;integral component of membrane;membrane","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl];Combining with an extracellular or intracellular messenger to initiate a change in cell activity. [GOC:ceb, ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0258900-01",0.0013198156731918,0.054989452300029495,2.19511820500033,"OS03G0258900",null,78.4825517958139,95.7277144971724,297.590045357825,500.166118289075,"no","OS03G0258900","Glyoxal oxidase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NU0]","Galactose oxidase, beta-propeller domain containing protein. (Os03t0258900-01)",3,8384206,8386087]
["OS05T0490500-01",1.32647577732991E-3,0.054989452300029495,-0.5790971111912331,"OS05G0490500",null,596.2635428643,601.128873831706,421.50458883469,380.009023465723,"no","OS05G0490500","Os05g0490500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNY6]","Conserved hypothetical protein. (Os05t0490500-01)",5,24107393,24110143,"GO:0000149;GO:0005768;GO:0003677;GO:0035493;GO:0060627;GO:0000323","SNARE binding;endosome;DNA binding;SNARE complex assembly;regulation of vesicle-mediated transport;lytic vacuole","Interacting selectively and non-covalently with a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein. [PMID:12642621];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];The aggregation, arrangement and bonding together of a set of components to form a SNARE complex, a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. [GOC:rb, PMID:10872468];Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell. [GOC:dph, GOC:tb];A vacuole that is maintained at an acidic pH and which contains degradative enzymes, including a wide variety of acid hydrolases. [GOC:krc]"]
["OS08T0424500-01",0.00132434518157447,0.054989452300029495,1.00069006161395,"OS08G0424500","BADH2",248.250988432692,205.802774182291,471.741403398387,436.80058650948,"no","OS08G0424500","Betaine aldehyde dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84LK3]","Betaine aldehyde dehydrogenase, Rice fragrance (Os08t0424500-01);Similar to Betaine aldehyde dehydrogenase. (Os08t0424500-02)",8,20379823,20385975,"GO:0055114;GO:0016491;GO:0008152;GO:0005777;GO:0071454;GO:0019285;GO:0008802;GO:0005737","oxidation-reduction process;oxidoreductase activity;metabolic process;peroxisome;cellular response to anoxia;glycine betaine biosynthetic process from choline;betaine-aldehyde dehydrogenase activity;cytoplasm","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%. [GOC:mah];The chemical reactions and pathways resulting in the formation of betaine (N-trimethylglycine) from the oxidation of choline. [GOC:jl];Catalysis of the reaction: betaine aldehyde + NAD+ + H2O = betaine + NADH + H+. [EC:1.2.1.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0451400-01",1.3229199985351E-3,0.054989452300029495,2.6374078084326102,"OS09G0451400","ACO1",10.63807642448,14.1054683434837,80.694945279563,73.2625291083669,"no","OS09G0451400","1-aminocyclopropane-1-carboxylate oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0J1C1]","ACC oxidase, Ethylene biosynthesis (Os09t0451400-01)",9,16925457,16927046,"GO:0009835;GO:0009693;GO:0031418;GO:0009815;GO:0055114;GO:0046872;GO:0016491","fruit ripening;ethylene biosynthetic process;L-ascorbic acid binding;1-aminocyclopropane-1-carboxylate oxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity","An aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal. [GOC:lr];The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:0387969845];Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. [CHEBI:38290, GOC:mah];Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + L-ascorbate + O(2) = CO(2) + dehydroascorbate + ethylene + 2 H(2)O + hydrogen cyanide. Ethene is also known as ethylene. [EC:1.14.17.4, RHEA:23643];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS02T0554900-02",1.33497991329285E-3,0.055265997711278096,-0.857259428932537,"OS02G0554900","PDIL1-3",939.655041909064,1069.47414368346,504.346595216111,604.693021915893,"no","OS02G0554900","Protein disulfide isomerase-like 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q69ST6]","Similar to Protein disulfide isomerase (Fragment). (Os02t0554900-01);Similar to Protein disulfide isomerase-like 1-3. (Os02t0554900-02)",2,20957207,20961970,"GO:0034976;GO:0003756;GO:0006457;GO:0005783;GO:0016853;GO:0005788;GO:0005623;GO:0045454","response to endoplasmic reticulum stress;protein disulfide isomerase activity;protein folding;endoplasmic reticulum;isomerase activity;endoplasmic reticulum lumen;cell;cell redox homeostasis","Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:cjm, GOC:mah];Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins. [EC:5.3.4.1, GOC:vw, http://en.wikipedia.org/wiki/Protein_disulfide-isomerase#Function];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The volume enclosed by the membranes of the endoplasmic reticulum. [ISBN:0198547684];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]"]
["OS02T0131100-02",1.34250534025367E-3,0.0553786894064201,-0.41249980526108104,"OS02G0131100",null,5976.11710534326,6267.63129229324,4399.72876654249,4799.24926944985,"no","OS02G0131100","Os02g0131100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VED8]","Hypothetical conserved gene. (Os02t0131100-01);Conserved hypothetical protein. (Os02t0131100-02)",2,1626975,1630134]
["OS03T0835150-01",0.00134070330635271,0.0553786894064201,0.357300837586769,"OS03G0835150",null,4792.53192914178,4643.30881824457,6002.53757062734,6085.02881020048,"no","OS03G0835150","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q75LJ0]","Conserved hypothetical protein. (Os03t0835150-01)",3,35090847,35091639]
["OS11T0521000-01",0.00134313985500646,0.0553786894064201,-1.57616637687085,"OS11G0521000",null,455.606501983491,636.126102787662,161.967041079997,204.16937250472,"no","OS11G0521000","GDSL-like Lipase/Acylhydrolase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R3H2]","Lipase, GDSL domain containing protein. (Os11t0521000-01)",11,18770070,18772676,"GO:0016788;GO:0016787","hydrolase activity, acting on ester bonds;hydrolase activity","Catalysis of the hydrolysis of any ester bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS10T0172000-00",1.3506645280475802E-3,0.0556138849877489,-0.849477971243058,"OS10G0172000",null,383.473163112194,426.20899014672,204.907232199304,244.454636393092,"no","OS10G0172000","Os10g0172000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRI0]","Hypothetical protein. (Os10t0172000-00)",10,4946821,4948377]
["OS03T0128100-02",1.3531079111418602E-3,0.0556395059235615,-0.508851277669098,"OS03G0128100",null,2313.25276072574,2078.00630841384,1533.70516262367,1552.3917624104,"no","OS03G0128100","Os03g0128100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DVI7]","Similar to Callose synthase 1 catalytic subunit. (Os03t0128100-01);Similar to 1,3-beta-glucan synthase component family protein, expressed. (Os03t0128100-02)",3,1582178,1585728,"GO:0000148;GO:0006075;GO:0003843;GO:0016020;GO:0016021","1,3-beta-D-glucan synthase complex;(1->3)-beta-D-glucan biosynthetic process;1,3-beta-D-glucan synthase activity;membrane;integral component of membrane","A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain. [EC:2.4.1.34];The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. [GOC:ai];Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). [EC:2.4.1.34];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0726400-02",0.00136220989831109,0.0559384903403233,0.365647112962871,"OS06G0726400","SBE1",2152.00790832661,2094.99289473567,2687.87433571768,2784.21390389541,"no","OS06G0726400","1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01401]","Branching enzyme-I precursor (Starch-branching enzyme I) (1,4-alpha- glucan branching enzyme I). (Os06t0726400-01);Similar to 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic. (Os06t0726400-02);Hypothetical conserved gene. (Os06t0726400-03);Similar to 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic. (Os06t0726400-04)",6,30897378,30905803,"GO:0005978;GO:0003844;GO:0043169;GO:0004553;GO:0005975;GO:0003824;;GO:0009501;GO:0005982;GO:0019252;GO:0009536;GO:0009507;GO:0016757;GO:0016740;GO:0102752","glycogen biosynthetic process;1,4-alpha-glucan branching enzyme activity;cation binding;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;catalytic activity;;amyloplast;starch metabolic process;starch biosynthetic process;plastid;chloroplast;transferase activity, transferring glycosyl groups;transferase activity","The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues. [ISBN:0198506732];Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain. [EC:2.4.1.18];Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];;A plastid whose main function is to synthesize and store starch. [ISBN:0140514031];The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0684100-00",0.00136757079772779,0.0560832523653416,-1.21117431975096,"OS02G0684100",null,403.624552092757,346.884298769324,139.525824544816,184.631633509053,"no","OS02G0684100","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0VN52]","Sulfotransferase domain domain containing protein. (Os02t0684100-00)",2,27967626,27968925,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0405900-03",1.37095999663309E-3,0.056146876430474696,-0.37919890044367405,"OS05G0405900",null,2085.02627586287,2133.50454035437,1638.46116909957,1605.01702566807,"no","OS05G0405900","Os05g0405900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DI99]","WD40 repeat-like domain containing protein. (Os05t0405900-01);Hypothetical conserved gene. (Os05t0405900-02);Conserved hypothetical protein. (Os05t0405900-03)",5,19768783,19775018,"GO:0005737;GO:0042594;GO:0016192","cytoplasm;response to starvation;vesicle-mediated transport","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment. [GOC:go_curators];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]"]
["OS01T0954500-01",0.00137496322304629,0.0561763296459757,0.825892748749926,"OS01G0954500",null,169.196150624742,158.51686056521,275.148828822645,305.765615282188,"no","OS01G0954500","Os01g0954500 protein [Source:UniProtKB/TrEMBL;Acc:Q941Y5]","Protein of unknown function DUF702 family protein. (Os01t0954500-01)",1,42037177,42039335]
["OS10T0557900-00",1.37535659122774E-3,0.0561763296459757,-1.03471205047953,"OS10G0557900",null,161.723350059952,168.155895703657,85.0709982842264,75.9474469484865,"no","OS10G0557900","Matrixin family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q94LQ4]","Peptidase M10A and M12B, matrixin and adamalysin family protein. (Os10t0557900-00)",10,21955492,21957095,"GO:0031012;GO:0008237;GO:0046872;GO:0004222;GO:0006508;GO:0016787;GO:0008233;GO:0008270","extracellular matrix;metallopeptidase activity;metal ion binding;metalloendopeptidase activity;proteolysis;hydrolase activity;peptidase activity;zinc ion binding","A structure lying external to one or more cells, which provides structural support for cells or tissues. [GOC:mah, NIF_Subcellular:nlx_subcell_20090513];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0636600-01",0.00138125767958836,0.05618100576881,1.17438816430096,"OS01G0636600",null,103.045702554498,129.959013390944,236.68857639926,289.196413494557,"no","OS01G0636600","Peptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5Q2]","Hypothetical conserved gene. (Os01t0636600-01)",1,25516026,25523268,"GO:0005739;GO:0009507;GO:0042586;GO:0003723;GO:0006412;GO:0009536;GO:0046872;GO:0016787;GO:0003676;GO:0005524;GO:0031365;GO:0043686;GO:0018206","mitochondrion;chloroplast;peptide deformylase activity;RNA binding;translation;plastid;metal ion binding;hydrolase activity;nucleic acid binding;ATP binding;N-terminal protein amino acid modification;co-translational protein modification;peptidyl-methionine modification","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide. [EC:3.5.1.88, GOC:jl];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The alteration of the N-terminal amino acid residue in a protein. [GOC:mah];The process of covalently altering one or more amino acids in a protein after translation has begun but before the protein has been released from the ribosome. [GOC:jsg];The modification of peptidyl-methionine. [GOC:go_curators]"]
["OS01T0893400-02",1.3821409744937201E-3,0.05618100576881,-0.846849099737575,"OS01G0893400",null,354.507414972225,348.5933754331,211.56231371804,179.360130346071,"no","OS01G0893400","BTB/POZ and TAZ domain-containing protein 3 [Source:Projected from Arabidopsis thaliana (AT1G05690) UniProtKB/Swiss-Prot;Acc:Q9SYL0]","Zinc finger, TAZ-type domain containing protein. (Os01t0893400-01);Zinc finger, TAZ-type domain containing protein. (Os01t0893400-02)",1,38843729,38846523,"GO:0016573;GO:0019005;GO:0042787;GO:0030162;GO:0031625;GO:0043161;GO:0005737;GO:0004402;GO:0003712;GO:0005634;GO:0006355;GO:0008270;GO:0005516;GO:0009409;GO:0009553;GO:0009555;GO:0009651;GO:0009723;GO:0009751;GO:0042542","histone acetylation;SCF ubiquitin ligase complex;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;regulation of proteolysis;ubiquitin protein ligase binding;proteasome-mediated ubiquitin-dependent protein catabolic process;cytoplasm;histone acetyltransferase activity;transcription cofactor activity;nucleus;regulation of transcription, DNA-templated;zinc ion binding;calmodulin binding;response to cold;embryo sac development;pollen development;response to salt stress;response to ethylene;response to salicylic acid;response to hydrogen peroxide","The modification of a histone by the addition of an acetyl group. [GOC:ai];A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). [PMID:15571813, PMID:15688063];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. [GOC:mah];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone. [EC:2.3.1.48];Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl]"]
["OS06T0283300-01",1.3828265363362501E-3,0.05618100576881,-0.477505988743992,"OS06G0283300",null,971.343258497971,906.559937387835,667.712218828182,681.031935273397,"no","OS06G0283300","Calcium/calmodulin-regulated receptor-like kinase 2 [Source:Projected from Arabidopsis thaliana (AT5G15730) UniProtKB/Swiss-Prot;Acc:Q9LFV3]","Similar to nodulation receptor kinase. (Os06t0283300-01);Similar to nodulation receptor kinase. (Os06t0283300-02)",6,10009636,10013501,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0046872","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;metal ion binding","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS08T0192800-01",0.00138027924700851,0.05618100576881,0.414407460348573,"OS08G0192800",null,1317.89531781802,1361.80393849203,1717.24091747466,1854.1314306888,"no","OS08G0192800","Os08g0192800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z1C1]","Bromodomain containing protein. (Os08t0192800-01)",8,5418272,5420390]
["OS05T0323400-01",1.3907958777365501E-3,0.0562324630092751,-1.21616529980557,"OS05G0323400",null,388.335743301365,371.588225091175,137.574414411322,189.51606825797,"no","OS05G0323400","Os05g0323400 protein [Source:UniProtKB/TrEMBL;Acc:Q5W6D4]","Hypothetical protein. (Os05t0323400-01)",5,15006215,15007071]
["OS07T0673200-01",1.39145529048874E-3,0.0562324630092751,0.5757411060570371,"OS07G0673200",null,379.162458026529,398.350811939846,599.082910982638,559.756222225859,"no","OS07G0673200","Probable E3 ubiquitin-protein ligase BAH1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XI73]","RING-type E3 ubiquitin-ligase, Maintenance of phosphate homeostasis via degradation of phosphate transporters (Os07t0673200-01)",7,28452751,28456565,"GO:0043161;GO:0016567;GO:0061630;GO:0005634;GO:0046872;GO:0016740;GO:0004842;GO:0009626;GO:0009627;GO:0009697;GO:0009751;GO:0010167;GO:0010337;GO:0042742;GO:0080021;GO:0005886","proteasome-mediated ubiquitin-dependent protein catabolic process;protein ubiquitination;ubiquitin protein ligase activity;nucleus;metal ion binding;transferase activity;ubiquitin-protein transferase activity;plant-type hypersensitive response;systemic acquired resistance;salicylic acid biosynthetic process;response to salicylic acid;response to nitrate;regulation of salicylic acid metabolic process;defense response to bacterium;response to benzoic acid;plasma membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The rapid, localized death of plant cells in response to invasion by a pathogen. [ISBN:0582227089];The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641];The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. [ISBN:0943088399];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. [GOC:sm];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving salicylic acid. [PMID:14765119];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzoic acid stimulus. [PMID:18753285];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS09T0553300-01",1.3873836274120302E-3,0.0562324630092751,-0.5067908450512121,"OS09G0553300",null,993.7725714405,1110.64735421988,722.997454459502,758.064273031879,"no","OS09G0553300","Os09g0553300 protein [Source:UniProtKB/TrEMBL;Acc:Q0IZS1]","NUDIX hydrolase domain containing protein. (Os09t0553300-01)",9,21922941,21926057,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS12T0210300-01",1.38999356962907E-3,0.0562324630092751,0.397062005143051,"OS12G0210300",null,1848.92660983904,1882.64505177772,2353.40062099368,2560.42069538216,"no","OS12G0210300","Glutathione S-transferase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q945X3]","Similar to Glutathione S-transferase GST 18 (EC 2.5.1.18). (Os12t0210300-01)",12,5760537,5763699,"GO:0009072;GO:0005737;GO:0003824;GO:0016740","aromatic amino acid family metabolic process;cytoplasm;catalytic activity;transferase activity","The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0360200-01",1.4012651723108501E-3,0.0565540997945062,1.39876476278385,"OS01G0360200","RBOHB",132.900780941795,145.205008174973,339.157633603275,394.139824920272,"no","OS01G0360200","Respiratory burst oxidase homolog protein B [Source:UniProtKB/Swiss-Prot;Acc:Q5ZAJ0]","Similar to Respiratory burst oxidase homolog. (Os01t0360200-01);Similar to Respiratory burst oxidase homolog. (Os01t0360200-03)",1,14621368,14627934,"GO:0043621;GO:0005515;GO:0050664;GO:0004601;GO:0005509;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0016020;GO:0016021;GO:0016174","protein self-association;protein binding;oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor;peroxidase activity;calcium ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;membrane;integral component of membrane;NAD(P)H oxidase activity","Interacting selectively and non-covalently with a domain within the same polypeptide. [GOC:jl];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule. [EC:1.6.3.-];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: NAD(P)H + H+ + O2 = NAD(P)+ + hydrogen peroxide. [EC:1.6.3.1]"]
["OS09T0240500-03",1.40849253978825E-3,0.056770796933523396,1.22818983407728,"OS09G0240500",null,125.611881257303,102.278102403456,299.781201808686,234.103181777254,"no","OS09G0240500","Os09g0240500 protein [Source:UniProtKB/TrEMBL;Acc:Q68UR2]","Similar to Sulfate transporter 4.1, chloroplast precursor (AST82). (Os09t0240500-01);Similar to Sulfate transporter 4.1. (Os09t0240500-02);Similar to Sulfate transporter 4.1. (Os09t0240500-03);Similar to Sulfate transporter 4.1. (Os09t0240500-04)",9,3073972,3092832,"GO:0015116;GO:0005887;GO:0005886;GO:1902358;GO:0008272;GO:0008271;GO:0055085;GO:0016020;GO:0016021;GO:0006810","sulfate transmembrane transporter activity;integral component of plasma membrane;plasma membrane;sulfate transmembrane transport;sulfate transport;secondary active sulfate transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane;transport","Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other. [GOC:ai];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of sulfate across a membrane. [GOC:dph, GOC:TermGenie, PMID:9055073];The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS01T0833200-01",1.4406980643774101E-3,0.057312769873513796,0.526397661041206,"OS01G0833200",null,1653.22985730922,1673.6910083054,2231.43748765031,2560.42069538216,"no","OS01G0833200","Homoserine dehydrogenase-like [Source:UniProtKB/TrEMBL;Acc:Q5QLC2]","Similar to expressed protein. (Os01t0833200-01)",1,35682818,35685747,"GO:0004848","ureidoglycolate hydrolase activity","Catalysis of the reaction: (S)-ureidoglycolate + H(2)O + 2 H(+) = CO(2) + glyoxylate + 2 NH(4)(+). [EC:3.5.3.19, RHEA:19812]"]
["OS02T0790500-02",1.43067126914525E-3,0.057312769873513796,1.34564284227377,"OS02G0790500",null,379.492237110357,484.055440287905,1237.84179004024,956.80775535886,"no","OS02G0790500","Os02g0790500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQK2]","Hypothetical protein. (Os02t0790500-01);Similar to Trehalose-6-phosphate synthase. (Os02t0790500-02);Similar to trehalose-6-phosphate synthase. (Os02t0790500-03)",2,33569391,33573165,"GO:0005992;GO:0003824;GO:0070413;GO:0016791;GO:0005737;GO:0016311;","trehalose biosynthetic process;catalytic activity;trehalose metabolism in response to stress;phosphatase activity;cytoplasm;dephosphorylation;","The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving trehalose that occur as a result of a stimulus indicating the organism is under stress. [GOC:jp, GOC:mah, PMID:9797333];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];"]
["OS03T0148700-02",0.00143863021636997,0.057312769873513796,-0.80398383396449,"OS03G0148700",null,446.582427076242,426.673311661934,273.955853349282,226.21479037148,"no","OS03G0148700","Os03g0148700 protein [Source:UniProtKB/TrEMBL;Acc:Q8H085]","Similar to Calcium/calmodulin-regulated receptor-like kinase. (Os03t0148700-01);Similar to nodulation receptor kinase. (Os03t0148700-02)",3,2707497,2710821,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301;GO:0055085;GO:0016021;GO:0004674;GO:0000166;GO:0016020","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity;transmembrane transport;integral component of membrane;protein serine/threonine kinase activity;nucleotide binding;membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0314500-02",1.4393117853914602E-3,0.057312769873513796,-1.02831260893471,"OS03G0314500",null,371.174351727771,374.528364065184,157.818626104005,207.786927871428,"no","OS03G0314500","Os03g0314500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWM0]","WD40-like Beta Propeller domain containing protein. (Os03t0314500-01);Hypothetical conserved gene. (Os03t0314500-02)",3,11266821,11270098]
["OS03T0392600-01",1.43840473314623E-3,0.057312769873513796,0.6924624606907851,"OS03G0392600",null,258.838809383714,300.298785971163,455.937551837648,447.650887650445,"no","OS03G0392600","Carboxypeptidase [Source:UniProtKB/TrEMBL;Acc:Q75KN5]","Peptidase S10, serine carboxypeptidase family protein. (Os03t0392600-01)",3,15763550,15767310,"GO:0004185;GO:0051603;GO:0004180;GO:0006508;GO:0016787;GO:0008233","serine-type carboxypeptidase activity;proteolysis involved in cellular protein catabolic process;carboxypeptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0836800-01",1.43453506951829E-3,0.057312769873513796,1.6887330497658901,"OS03G0836800",null,1364.78099811162,1382.39054376024,3477.41285788619,5378.73954550712,"no","OS03G0836800","Os03g0836800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W5B6]","Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-). (Os03t0836800-01)",3,35161307,35163174,"GO:0016787;GO:0008152","hydrolase activity;metabolic process","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS05T0295300-01",1.43855615238771E-3,0.057312769873513796,-0.37798452154890105,"OS05G0295300",null,3612.23589044629,3901.16169832563,2869.54860130283,2912.09999730416,"no","OS05G0295300","Os05g0295300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKG9]","Similar to Acetyl-coenzyme A carboxylase (EC 6.4.1.2). (Os05t0295300-01)",5,13064221,13065317,"GO:0005829;GO:0004075;GO:0003824;GO:0006631;GO:0008152;GO:0006629;GO:0016874;GO:0005737;GO:0006633;GO:0046872;GO:0005524;GO:0000166;GO:0003989;GO:2001295","cytosol;biotin carboxylase activity;catalytic activity;fatty acid metabolic process;metabolic process;lipid metabolic process;ligase activity;cytoplasm;fatty acid biosynthetic process;metal ion binding;ATP binding;nucleotide binding;acetyl-CoA carboxylase activity;malonyl-CoA biosynthetic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein. [EC:6.3.4.14];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. [EC:6.4.1.2];The chemical reactions and pathways resulting in the formation of malonyl-CoA, the S-malonyl derivative of coenzyme A. [CHEBI:15531, GOC:yaf, UniPathway:UPA00655]"]
["OS06T0136600-02",0.00143864826895746,0.057312769873513796,0.806260154408296,"OS06G0136600",null,232.848295448263,257.461319757437,444.251441602552,413.139519724931,"no","OS06G0136600","Os06g0136600 protein [Source:UniProtKB/TrEMBL;Acc:Q5VNT9]","Similar to Enolase 1 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 1) (2-phospho- D-glycerate hydro-lyase 1). (Os06t0136600-01);Similar to Enolase. (Os06t0136600-02)",6,1931305,1936376,"GO:0000015;GO:0004634;GO:0006096;GO:0000287;GO:0046872","phosphopyruvate hydratase complex;phosphopyruvate hydratase activity;glycolytic process;magnesium ion binding;metal ion binding","A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water. [GOC:jl, ISBN:0198506732];Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O. [EC:4.2.1.11, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS12T0571100-01",1.4250094865433402E-3,0.057312769873513796,1.22665423244991,"OS12G0571100","MT4C",57067.976227472,41848.8454730507,109756.08805166,121732.652376213,"no","OS12G0571100","Metallothionein-like protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q2QNC3]","Metallothionein-like protein, ROS (reactive oxygen species) scavenger, Antioxidant (Os12t0571100-01)",12,23515075,23516013,"GO:0009555;GO:0072593;GO:0046872","pollen development;reactive oxygen species metabolic process;metal ion binding","The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS12T0607000-02",1.43113454426061E-3,0.057312769873513796,0.41714654263883105,"OS12G0607000",null,1013.47449661673,1043.66389106292,1398.13130809593,1348.73252007737,"no","OS12G0607000","Homocysteine S-methyltransferase 3 [Source:UniProtKB/TrEMBL;Acc:Q2QME6]","Similar to homocysteine S-methyltransferase-2. (Os12t0607000-01);Similar to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S- methyltransferase 2) (ZmHMT-2). (Os12t0607000-02)",12,25641843,25645416,"GO:0032259;GO:0008168;GO:0016740;GO:0009086;GO:0046872;GO:0005737;GO:0008270;GO:0047150","methylation;methyltransferase activity;transferase activity;methionine biosynthetic process;metal ion binding;cytoplasm;zinc ion binding;betaine-homocysteine S-methyltransferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: L-homocysteine + betaine = N,N-dimethylglycine + L-methionine. [EC:2.1.1.5, RHEA:22339]"]
["OS02T0626400-03",1.44918548678562E-3,0.0575006688211354,-0.463775943582649,"OS02G0626400",null,10155.4391280204,9523.67471053507,6772.49324050976,7496.55702109427,"no","OS02G0626400","Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:Q6K6Q1]","Phenylalanine ammonia-lyase (EC 4.3.1.5). (Os02t0626400-01);Similar to Phenylalanine ammonia-lyase. (Os02t0626400-02);Similar to Phenylalanine ammonia-lyase. (Os02t0626400-03)",2,24985256,24989388,"GO:0006559;GO:0016841;GO:0005737;GO:0016829;GO:0003824;GO:0009800;GO:0009698;GO:0045548","L-phenylalanine catabolic process;ammonia-lyase activity;cytoplasm;lyase activity;catalytic activity;cinnamic acid biosynthetic process;phenylpropanoid metabolic process;phenylalanine ammonia-lyase activity","The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. [GOC:go_curators];Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. [EC:4.3.-.-, GOC:krc];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid. [GOC:jl];The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. [GOC:jl];Catalysis of the reaction: L-phenylalanine = NH(4)(+) + trans-cinnamate. [RHEA:21387]"]
["OS04T0584500-01",0.00144875261095271,0.0575006688211354,-3.18072746310229,"OS04G0584500",null,75.4056431175326,54.0655429085172,7.38192092656703,6.89645302477335,"no","OS04G0584500","Os04g0584500 protein [Source:UniProtKB/TrEMBL;Acc:B7EPT4]","U box domain domain containing protein. (Os04t0584500-01)",4,29522376,29527451,"GO:0016567;GO:0004842;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0420300-01",1.45370888358767E-3,0.057536347591668896,-0.67366019514419,"OS09G0420300",null,999.888094957057,1083.88476737121,601.034321116132,705.312377743578,"no","OS09G0420300","Os09g0420300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ERQ1]","Methyladenine glycosylase domain containing protein. (Os09t0420300-01)",9,15135243,15139321,"GO:0008725;GO:0006284;GO:0006281;GO:0003824","DNA-3-methyladenine glycosylase activity;base-excision repair;DNA repair;catalytic activity","Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site. [EC:3.2.2.20, GOC:elh, PMID:10872450, PMID:9224623];In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. [ISBN:0815316194];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS10T0465000-01",1.45385115019535E-3,0.057536347591668896,0.895283717287484,"OS10G0465000",null,191.370169750732,165.257029387325,325.505335729492,337.812562966172,"no","OS10G0465000","Os10g0465000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRX1]","Hypothetical conserved gene. (Os10t0465000-01);Hypothetical conserved gene. (Os10t0465000-02);Conserved hypothetical protein. (Os10t0465000-03)",10,17158115,17163197]
["OS03T0784600-01",1.45874337356058E-3,0.0576552749663943,1.07976572842717,"OS03G0784600",null,90.7135988289277,79.2584302826051,186.359667748671,172.908990111653,"no","OS03G0784600","Os03g0784600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W4F2]","Conserved hypothetical protein. (Os03t0784600-01)",3,32562874,32565104]
["OS08T0497300-03",1.46102697020642E-3,0.05767092505652,0.410535872597638,"OS08G0497300",null,947.77775791585,1005.0026119662,1284.87707792351,1310.71842286188,"no","OS08G0497300","Os08g0497300 protein [Source:UniProtKB/TrEMBL;Acc:Q7F8U2]","Cellular retinaldehyde binding/alpha-tocopherol transport family protein. (Os08t0497300-01);Similar to SEC14 cytosolic factor (Secretion factor 14) family protein (Fragment). (Os08t0497300-02);Similar to phosphatidylinositol transporter/ transporter. (Os08t0497300-03)",8,24560893,24566089,"GO:0005622;GO:0006810;GO:0005215","intracellular;transport;transporter activity","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS01T0287400-01",0.0014754918324336,0.0579822120636882,-1.9587159087706398,"OS01G0287400",null,85.617329231797,69.994457911911,16.5869861346984,23.4452867948004,"no","OS01G0287400","Os01g0287400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V182]","Similar to Hydrophobic protein LTI6A (Low temperature-induced protein 6A). (Os01t0287400-01)",1,10333794,10334375,"GO:0006278;GO:0003676;GO:0008270;GO:0003964","RNA-dependent DNA biosynthetic process;nucleic acid binding;zinc ion binding;RNA-directed DNA polymerase activity","A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. [EC:2.7.7.49]"]
["OS05T0541400-00",1.47642385032688E-3,0.0579822120636882,2.98859708738579,"OS05G0541400",null,5.09626959713077,7.20531184387319,41.9553178701196,55.6825561376509,"no","OS05G0541400","Os05g0541400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQ90]","Helix-loop-helix DNA-binding domain containing protein. (Os05t0541400-00)",5,26879818,26881142,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS06T0270200-00",0.00147650435276085,0.0579822120636882,-0.41482951550568503,"OS06G0270200",null,1302.60650902662,1239.31363714619,945.458209677811,961.256758586815,"no","OS06G0270200","Potassium transporter [Source:UniProtKB/TrEMBL;Acc:A0A0P0WV22]","Similar to Potassium transporter 24. (Os06t0270200-00)",6,9033633,9037674,"GO:0005886;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016020;GO:0016021","plasma membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0508500-02",1.47184056401333E-3,0.0579822120636882,"Inf","OS09G0508500","DRB5",0,0,36.6737839218589,79.329969815566,"no","OS09G0508500","Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:B7E321]","Similar to Isoform 2 of Double-stranded RNA-binding protein 5. (Os09t0508500-01);Similar to Double-stranded RNA binding motif family protein. (Os09t0508500-02)",9,19710958,19712801,"GO:0003723","RNA binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS01T0772100-01",1.4799742747353402E-3,0.0579947189792376,6.5387686329734,"OS01G0772100",null,0,1.02933026341046,27.3197418689151,68.3820864848344,"no","OS01G0772100","LOB domain-containing protein 20 [Source:Projected from Arabidopsis thaliana (AT3G03760) UniProtKB/Swiss-Prot;Acc:Q9SRV3]","Lateral organ boundaries, LOB domain containing protein. (Os01t0772100-01)",1,32592931,32593952,"GO:0009753;GO:0009867;GO:1900150","response to jasmonic acid;jasmonic acid mediated signaling pathway;regulation of defense response to fungus","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl];A series of molecular signals mediated by jasmonic acid. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850];Any process that modulates the frequency, rate or extent of defense response to fungus. [GOC:dhl, GOC:TermGenie, PMID:22242006]"]
["OS04T0492400-02",1.48061929837017E-3,0.0579947189792376,-0.421968850143463,"OS04G0492400",null,1283.24068455753,1348.4226450677,998.146283282147,966.141193335732,"no","OS04G0492400","OJ990528_30.4 protein [Source:UniProtKB/TrEMBL;Acc:Q7X8M4]","Similar to H0425E08.4 protein. (Os04t0492400-01);Similar to H0425E08.4 protein. (Os04t0492400-02)",4,24611350,24615159]
["OS01T0227200-01",1.4834433598373102E-3,0.0580309366578097,0.684953502621456,"OS01G0227200",null,346.604244759405,335.702029089546,578.216127623345,518.693667370761,"no","OS01G0227200","Os01g0227200 protein [Source:UniProtKB/TrEMBL;Acc:Q8W0B8]","Similar to Somatic embryogenesis receptor kinase-like protein. (Os01t0227200-01)",1,7038103,7042925,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0570800-01",0.00148853247398669,0.058081282433258496,-0.5234531836691271,"OS01G0570800",null,852.096276640265,761.704394923737,570.787464046976,551.941126627592,"no","OS01G0570800","Os01g0570800 protein [Source:UniProtKB/TrEMBL;Acc:Q656X7]","IQ calmodulin-binding region domain containing protein. (Os01t0570800-01)",1,21900067,21903103]
["OS08T0453716-00",1.48745797853009E-3,0.058081282433258496,-0.69533564723372,"OS08G0453716",null,493.870319875332,502.904723147132,290.208716498748,325.365284329516,"no","OS08G0453716","Os08g0453716 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGN3]","Hypothetical protein. (Os08t0453716-00)",8,22211458,22219039]
["OS04T0453200-02",1.5007798326811502E-3,0.0583912011113621,-0.806615204090923,"OS04G0453200",null,1624.78961284154,1433.9818602537,797.616358461333,951.149475595985,"no","OS04G0453200","OSJNBa0027G07.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUX7]","Similar to Monosaccharide transporter 1. (Os04t0453200-01);Similar to H0505F09.4 protein. (Os04t0453200-02)",4,22611924,22620016,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0022891;GO:0022857;GO:0006810;GO:0055085;GO:0005215;GO:0016021;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;substrate-specific transmembrane transporter activity;transmembrane transporter activity;transport;transmembrane transport;transporter activity;integral component of membrane;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0603300-01",1.49869917355236E-3,0.0583912011113621,-0.46870784274577204,"OS07G0603300",null,998.868841037631,1099.32472132237,764.952772329622,751.226064383395,"no","OS07G0603300","Os07g0603300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X8U0]","TON1 RECRUIT MOTIF (TRM)-containing protein, Regulation of grain size and shape (Os07t0603300-01)",7,24664328,24669321,"GO:0051513","regulation of monopolar cell growth","Any process that modulates the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell. [GOC:ai]"]
["OS08T0453200-01",1.5037639544285E-3,0.0583912011113621,1.0316686304097,"OS08G0453200",null,703.397640088204,540.484782916915,1328.39086080189,1214.58673694574,"no","OS08G0453200","Os08g0453200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGH0]","Similar to Auxin-repressed protein. (Os08t0453200-01);Non-protein coding transcript. (Os08t0453200-02)",8,22190140,22191722]
["OS12T0578300-01",1.5041200338649502E-3,0.0583912011113621,-0.908898318996429,"OS12G0578300",null,245.640194581703,251.156584272151,120.987428276624,143.602381618152,"no","OS12G0578300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QN57]","Calmodulin-binding, plant family protein. (Os12t0578300-01)",12,23925696,23928693,"GO:0016798;GO:0005516;GO:0016020","hydrolase activity, acting on glycosyl bonds;calmodulin binding;membrane","Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0235700-02",1.5141784921175602E-3,0.0586326759077007,0.41708922180585706,"OS01G0235700",null,1486.11108437619,1374.19515577317,1873.42565054897,1945.74355769136,"no","OS01G0235700","Os01g0235700 protein [Source:UniProtKB/TrEMBL;Acc:Q0JP90]","Similar to BHLH transcription factor (Fragment). (Os01t0235700-01);Similar to BHLH transcription factor (Fragment). (Os01t0235700-02)",1,7495121,7498347,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS09T0455900-01",0.00151312802938915,0.0586326759077007,1.60769123221545,"OS09G0455900",null,79.50180571524,66.9064671216796,180.492084493555,265.707233357399,"no","OS09G0455900","Os09g0455900 protein [Source:UniProtKB/TrEMBL;Acc:Q67TQ8]","Alpha/beta hydrolase fold-3 domain containing protein. (Os09t0455900-01)",9,17171733,17172815,"GO:0009056;GO:0016787;GO:0008152","catabolic process;hydrolase activity;metabolic process","The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS08T0404300-01",1.51835545388113E-3,0.0587199947176913,-0.44747368253455305,"OS08G0404300",null,2152.00723062028,2354.40967759665,1591.08622777306,1713.58581982972,"no","OS08G0404300","Mitochondrial ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:Q6ZKP0]","Similar to Chloroplast 50S ribosomal protein L27 (Fragment). (Os08t0404300-01)",8,19307392,19310989,"GO:0003735;GO:0005840;GO:0005622;GO:0006412","structural constituent of ribosome;ribosome;intracellular;translation","The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]"]
["OS01T0124100-01",1.52635497940695E-3,0.0589547374599761,1.38721517117737,"OS01G0124100",null,110.739095188838,91.6103934435306,223.21588467876,306.0763082261,"no","OS01G0124100","Os01g0124100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JR27]","Proteinase inhibitor I12, Bowman-Birk family protein. (Os01t0124100-01)",1,1345118,1346047,"GO:0004867;GO:0010951;GO:0010466;GO:0030414;GO:0005576","serine-type endopeptidase inhibitor activity;negative regulation of endopeptidase activity;negative regulation of peptidase activity;peptidase inhibitor activity;extracellular region","Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. [GOC:ai];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. [GOC:jl];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS04T0379916-00",1.53433695669909E-3,0.0591882104811496,"Inf","OS04G0379916",null,0,0,378.612002764089,56.5552454319856,"no","OS04G0379916","Os04g0379916 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9C1]","Hypothetical protein. (Os04t0379916-00)",4,18560600,18562029]
["OS06T0495800-01",0.00154004060937737,0.0593333173993663,-1.21659606672894,"OS06G0495800",null,293.545128794732,307.769748759726,108.303262408913,150.440590266636,"no","OS06G0495800","Os06g0495800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DC17]","Protein of unknown function DUF617, plant family protein. (Os06t0495800-01)",6,17284744,17286325]
["OS02T0433600-01",1.5564737080344501E-3,0.059362219529998296,-0.6320488836893411,"OS02G0433600",null,417.894106964723,412.761435627593,266.367483221922,269.620798140204,"no","OS02G0433600","BHLH transcription factor [Source:UniProtKB/TrEMBL;Acc:Q67U21]","Helix-loop-helix DNA-binding domain containing protein. (Os02t0433600-01)",2,13759250,13767143,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS02T0523500-01",0.00155798715772899,0.059362219529998296,0.37105901656848805,"OS02G0523500",null,1961.99029836836,1870.80594971449,2522.54498176848,2434.41744335457,"no","OS02G0523500","Os02g0523500 protein [Source:UniProtKB/TrEMBL;Acc:Q6H547]","Similar to 110 kDa 4SNc-Tudor domain protein (Fragment). (Os02t0523500-01);Similar to RNA binding protein Rp120. (Os02t0523500-02)",2,19098871,19105461,"GO:0006401;GO:0005634;GO:0005737;GO:0031047;GO:0090305;GO:0004518;GO:0016442","RNA catabolic process;nucleus;cytoplasm;gene silencing by RNA;nucleic acid phosphodiester bond hydrolysis;nuclease activity;RISC complex","The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation. [PMID:10749213, PMID:15145345]"]
["OS03T0351800-01",1.5544187745224502E-3,0.059362219529998296,-0.40810800733492103,"OS03G0351800",null,1170.10349950123,1213.58038056093,909.357122208173,887.013350403281,"no","OS03G0351800","Os03g0351800 protein [Source:UniProtKB/TrEMBL;Acc:Q10LG3]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0351800-01)",3,13199226,13201310,"GO:0000209;GO:0042787;GO:0043161;GO:0061630","protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity","Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777]"]
["OS03T0650900-01",1.5580111967291E-3,0.059362219529998296,0.44619916362952405,"OS03G0650900",null,654.361016271591,683.475294904543,923.016993142631,899.712880750464,"no","OS03G0650900","Probable E3 ubiquitin-protein ligase BAH1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XZZ3]","Ortholog of Arabidopsis NLA (AtNLA), RING-type E3 ubiquitin-ligase (Os03t0650900-01)",3,25268199,25272892,"GO:0043161;GO:0016567;GO:0061630;GO:0005634;GO:0046872;GO:0016740","proteasome-mediated ubiquitin-dependent protein catabolic process;protein ubiquitination;ubiquitin protein ligase activity;nucleus;metal ion binding;transferase activity","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0693000-01",0.00155754282306416,0.059362219529998296,0.35895822165064,"OS03G0693000",null,1945.75573218453,1998.95937154311,2586.59413194621,2472.50086990166,"no","OS03G0693000","Os03g0693000 protein [Source:UniProtKB/TrEMBL;Acc:B7F9A7]","Similar to predicted protein. (Os03t0693000-01)",3,27736390,27741374]
["OS04T0648800-02",1.55132508285794E-3,0.059362219529998296,-9.31533795595993,"OS04G0648800","HIP1",254.756216410375,778.940452442329,1.35747136120686,0.265074467421799,"no","OS04G0648800","Probable E3 ubiquitin-protein ligase HIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XTV7]","C3HC4 RING domain-containing E3 ubiquitin ligase, Modulation of heading date by physically interacting with Hd1 (Os04t0648800-01);Similar to Zinc finger, C3HC4 type family protein. (Os04t0648800-02)",4,33022835,33028358,"GO:0040008;GO:0043161;GO:0061630;GO:0005515;GO:0016567;GO:0046872;GO:0016740","regulation of growth;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein binding;protein ubiquitination;metal ion binding;transferase activity","Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0443900-01",0.00154383738085739,0.059362219529998296,0.525120090928701,"OS05G0443900",null,629.898922205363,595.982222514654,929.846928609859,834.26145511498,"no","OS05G0443900",null,"Similar to Basic leucine zipper protein (Liguleless2). (Os05t0443900-01)",5,21718749,21724490,"GO:0005515;GO:0006952;GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","protein binding;defense response;transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0139200-01",1.5487417292397501E-3,0.059362219529998296,0.825462399303397,"OS08G0139200",null,2197.51145028279,2387.01688084885,3649.13694963366,4475.11911695752,"no","OS08G0139200","Os08g0139200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZKI0]","Similar to F-171-b1_1 (Fragment). (Os08t0139200-01)",8,2182870,2184768,"GO:0005737;GO:0005886;GO:0003955;GO:0010181;GO:0055114;GO:0016491","cytoplasm;plasma membrane;NAD(P)H dehydrogenase (quinone) activity;FMN binding;oxidation-reduction process;oxidoreductase activity","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone. [EC:1.6.5.2];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS12T0145100-01",1.5582776925588701E-3,0.059362219529998296,-1.11891705074128,"OS12G0145100",null,1459.56073067127,1394.68394484272,558.572929307623,755.633551856869,"no","OS12G0145100","Os12g0145100 protein [Source:UniProtKB/TrEMBL;Acc:Q2QXS4]","Similar to Wali7 protein (Fragment). (Os12t0145100-01)",12,2215943,2219491]
["OS01T0860450-01",0.00156867622675803,0.0596839303610353,-1.4940109997639701,"OS01G0860450",null,182.100389882499,253.834678315586,81.0219398331168,73.7455296935261,"no","OS01G0860450","Os01g0860450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAQ1]","Hypothetical protein. (Os01t0860450-01)",1,37238917,37242334]
["OS04T0359300-00",0.00157175324922068,0.059726623470385896,-1.39532352314483,"OS04G0359300",null,89.6943449095016,97.7863750239933,33.1739722693969,38.0985910415506,"no","OS04G0359300","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9I4]","Sulfotransferase family protein. (Os04t0359300-00)",4,17185415,17186524,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0563600-01",1.5778910361279202E-3,0.0598110756027051,-0.5318427036045691,"OS03G0563600",null,2553.23106816252,2227.47069002023,1687.96976547225,1618.70167579101,"no","OS03G0563600","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5U1P4]","Similar to Peroxidase 56 precursor (EC 1.11.1.7) (Atperox P56) (ATP33). (Os03t0563600-01)",3,20264124,20269616,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS06T0700700-01",1.5766948886248601E-3,0.0598110756027051,1.23270605271907,"OS06G0700700",null,63.1937430044216,51.4665131705228,132.695889077587,136.764172969669,"no","OS06G0700700","Os06g0700700 protein [Source:UniProtKB/TrEMBL;Acc:Q0D9S9]","Similar to P1B-type heavy metal transporting ATPase. (Os06t0700700-01);P-Type heavy metal ATPase, Delivery of Zinc to developing tissues (Os06t0700700-02)",6,29477949,29480905,"GO:0030001;GO:0046872;GO:0016020;GO:0016021","metal ion transport;metal ion binding;membrane;integral component of membrane","The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0677300-01",1.5822608069069402E-3,0.059902394265948795,0.5664878937059771,"OS06G0677300",null,853.115530559691,771.997697557842,1133.76928755998,1272.8836955677,"no","OS06G0677300","Os06g0677300 protein [Source:UniProtKB/TrEMBL;Acc:Q653U9]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0677300-01)",6,28133801,28138094,"GO:0008442;GO:0051287;GO:0004616;GO:0055114;GO:0046872;GO:0016491;GO:0008270;GO:0016020;GO:0016021;GO:0009083;GO:0006574","3-hydroxyisobutyrate dehydrogenase activity;NAD binding;phosphogluconate dehydrogenase (decarboxylating) activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;zinc ion binding;membrane;integral component of membrane;branched-chain amino acid catabolic process;valine catabolic process","Catalysis of the reaction: 3-hydroxy-2-methylpropanoate + NAD+ = 2-methyl-3-oxopropanoate + NADH + H+. [EC:1.1.1.31];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+. [EC:1.1.1.44];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [GOC:ai];The chemical reactions and pathways resulting in the breakdown of valine, 2-amino-3-methylbutanoic acid. [GOC:ai]"]
["OS01T0261200-01",0.00159504310152154,0.0600144912109965,0.8074912260426821,"OS01G0261200","NAC74",340.327511922564,286.029045923451,558.85514017875,537.372401337533,"no","OS01G0261200","NAC8 protein [Source:UniProtKB/TrEMBL;Acc:Q0JNW6]","No apical meristem (NAM) protein domain containing protein. (Os01t0261200-01);Similar to NAC domain-containing protein 74. (Os01t0261200-02)",1,8792649,8797358,"GO:0016020;GO:0016021;GO:0003677;GO:0005634;GO:0006355;GO:0006351","membrane;integral component of membrane;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0975900-01",0.00159700776887078,0.0600144912109965,-0.535284972519081,"OS01G0975900","TIP1-2",1067.16720752109,1102.93778284829,743.865599536411,753.555377280583,"no","OS01G0975900","Probable aquaporin TIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q94CS9]","Similar to Tonoplast membrane integral protein ZmTIP1-2. (Os01t0975900-01);Similar to Tonoplast membrane integral protein ZmTIP1-2. (Os01t0975900-02)",1,43115747,43117221,"GO:0042807;GO:0005774;GO:0034220;GO:0015250;GO:0005773;GO:0009705;GO:0005887;GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0071918","central vacuole;vacuolar membrane;ion transmembrane transport;water channel activity;vacuole;plant-type vacuole membrane;integral component of plasma membrane;transport;transporter activity;membrane;integral component of membrane;urea transmembrane transport","A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination. [ISBN:9780815341116, Wikipedia:Vacuole];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0471245208];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]"]
["OS05T0349600-00",1.5939380583920402E-3,0.0600144912109965,0.38910125567062204,"OS05G0349600",null,2272.73238953644,2177.10836749591,2906.80279476044,2920.60779455773,"no","OS05G0349600","Os05g0349600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WL13]","Hypothetical protein. (Os05t0349600-00)",5,16503174,16504860]
["OS06T0202900-01",0.00159114780601471,0.0600144912109965,0.7527078933576491,"OS06G0202900",null,252.936929786808,232.701497957454,383.674429478302,434.603237546382,"no","OS06G0202900","Os06g0202900 protein [Source:UniProtKB/TrEMBL;Acc:Q69SQ5]","Serine/threonine protein kinase domain containing protein. (Os06t0202900-01)",6,5196777,5199383,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS09T0362900-01",1.59520072513343E-3,0.0600144912109965,-0.678699003991699,"OS09G0362900",null,369.989172751694,397.321481676436,240.023446419754,239.33730269692,"no","OS09G0362900","Os09g0362900 protein [Source:UniProtKB/TrEMBL;Acc:Q6K4E6]","SET domain containing protein. (Os09t0362900-01)",9,11870519,11874251,"GO:0016571;GO:0034968;GO:0018024;GO:0042393;GO:0005694;GO:0032259;GO:0008168;GO:0005634;GO:0008270;GO:0016740","histone methylation;histone lysine methylation;histone-lysine N-methyltransferase activity;histone binding;chromosome;methylation;methyltransferase activity;nucleus;zinc ion binding;transferase activity","The modification of histones by addition of methyl groups. [GOC:ai];The modification of a histone by addition of one or more methyl groups to a lysine residue. [GOC:mah, GOC:pr];Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. [EC:2.1.1.43, RESID:AA0074, RESID:AA0075, RESID:AA0076];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0403800-00",1.58841003368903E-3,0.0600144912109965,-1.8469486843248801,"OS10G0403800",null,618.687129091676,420.996077734877,121.963133343371,167.047668412953,"no","OS10G0403800","BHLH family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8LNC7]","Similar to DNA binding protein. (Os10t0403800-00)",10,13721970,13722965,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS02T0617300-02",1.6060483204579502E-3,0.060159807194903596,-0.771778313912677,"OS02G0617300",null,2395.97943511696,2650.17938148998,1350.52342984888,1604.9869732285,"no","OS02G0617300","CLIP-associating protein 1-like [Source:UniProtKB/TrEMBL;Acc:Q6KAI5]","Similar to OSIGBa0157A06.7 protein. (Os02t0617300-01);Armadillo-like helical domain containing protein. (Os02t0617300-02)",2,24488770,24501970]
["OS04T0432600-02",1.6053708253260701E-3,0.060159807194903596,-0.6791057436595911,"OS04G0432600",null,3985.85264407657,4447.24977043434,2438.07952844002,2828.83384587578,"no","OS04G0432600","Os04g0432600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JD41]","Similar to H0315E07.2 protein. (Os04t0432600-01);Similar to H0315E07.2 protein. (Os04t0432600-02)",4,21466501,21468612,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0129600-01",1.6067819674993901E-3,0.060159807194903596,1.49173372979976,"OS11G0129600",null,306.441911569065,441.618916692952,954.872973330755,1148.87403792813,"no","OS11G0129600","Os11g0129600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSD4]","Hypothetical conserved gene. (Os11t0129600-01)",11,1360778,1364052]
["OS02T0702600-01",1.6091093774345902E-3,0.060173206486391004,0.6782286714739071,"OS02G0702600",null,324.05961145653,297.034422445637,487.528422858699,506.330020323989,"no","OS02G0702600","Rop guanine nucleotide exchange factor 14 [Source:Projected from Arabidopsis thaliana (AT1G31650) UniProtKB/Swiss-Prot;Acc:Q56WM6]","Rop nucleotide exchanger, PRONE domain containing protein. (Os02t0702600-01);Rop nucleotide exchanger, PRONE domain containing protein. (Os02t0702600-02);Similar to predicted protein. (Os02t0702600-03)",2,28953036,28958936,"GO:0005089;GO:0043547;GO:0005085;GO:0080092","Rho guanyl-nucleotide exchange factor activity;positive regulation of GTPase activity;guanyl-nucleotide exchange factor activity;regulation of pollen tube growth","Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:kd, GOC:mah];Any process that modulates the frequency, rate or extent of pollen tube growth. [PMID:19208902]"]
["OS04T0542000-01",1.6116481482373302E-3,0.0601944672676614,-1.5875244954041499,"OS04G0542000",null,581.993987992334,682.445964641132,252.707612287464,168.024555362736,"no","OS04G0542000","OSJNBb0103I08.8 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUJ4]","Protein of unknown function DUF584 family protein. (Os04t0542000-01)",4,27137079,27144180]
["OS07T0638400-01",0.00161373683686874,0.0601988862515431,1.74205834723677,"OS07G0638400",null,37.7123950187677,28.8212473754928,131.712590357679,90.8504863298514,"no","OS07G0638400","1-Cys peroxiredoxin B [Source:UniProtKB/Swiss-Prot;Acc:P0C5D1]","Similar to 1-Cys peroxiredoxin. (Os07t0638400-01)",7,26551676,26552939,"GO:0051920;GO:0016209;GO:0005737;GO:0004601;GO:0045454;GO:0055114;GO:0016491;GO:0098869;GO:0005634","peroxiredoxin activity;antioxidant activity;cytoplasm;peroxidase activity;cell redox homeostasis;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification;nucleus","Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH. [EC:1.11.1.15];Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0776400-01",1.6157410308977802E-3,0.0602001463121818,-1.19931049622441,"OS02G0776400",null,1199.66186316458,871.842733108656,443.94580536987,458.159979448391,"no","OS02G0776400","Os02g0776400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KG67]","Similar to nuclear transcription factor Y subunit A-3. (Os02t0776400-01)",2,32794229,32798340,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS02T0827900-01",1.6268486031404E-3,0.0605401687249032,0.8391100600075451,"OS02G0827900",null,184.285024730731,204.460686143274,323.782070477337,371.663120176812,"no","OS02G0827900","Os02g0827900 protein [Source:UniProtKB/TrEMBL;Acc:Q6K7Q1]","Similar to Microsomal signal peptidase 21 kDa subunit. (Os02t0827900-01);Hypothetical conserved gene. (Os02t0827900-02);Hypothetical conserved gene. (Os02t0827900-03);Non-protein coding transcript. (Os02t0827900-04)",2,35572396,35578157,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0006465;GO:0090305;GO:0008233;GO:0016020;GO:0016021;GO:0016740;GO:0005787;GO:0006508;GO:0016787","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;signal peptide processing;nucleic acid phosphodiester bond hydrolysis;peptidase activity;membrane;integral component of membrane;transferase activity;signal peptidase complex;proteolysis;hydrolase activity","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. [GOC:mah, ISBN:0815316194];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space. [GOC:sgd_curators, PMID:1846444, PMID:7615509];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS05T0382900-02",1.63515963936556E-3,0.0607754225083899,-1.4912096934181,"OS05G0382900",null,313.215922908887,384.812067280019,102.321155491111,145.977284043888,"no","OS05G0382900","Annexin [Source:UniProtKB/TrEMBL;Acc:Q6L4C5]","Annexin family protein. (Os05t0382900-01);Similar to annexin-like protein RJ4. (Os05t0382900-02)",5,18500678,18503010,"GO:0005544;GO:0005509","calcium-dependent phospholipid binding;calcium ion binding","Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. [GOC:jl];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai]"]
["OS03T0710700-00",0.00164243859631007,0.0609717910017804,-0.699340139350287,"OS03G0710700",null,776.671486602729,862.578760737962,464.435611771556,545.102917979109,"no","OS03G0710700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10E24]","Similar to predicted protein. (Os03t0710700-00)",3,28655240,28657433,"GO:0005737;GO:0005634;GO:0120013;GO:0120009","cytoplasm;nucleus;intermembrane lipid transfer activity;intermembrane lipid transfer","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Enables the removal of a lipid from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. [GOC:krc, PMID:20823909, PMID:24220498, PMID:25797198];The transport of lipids between membranes in which a lipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). [GOC:krc, PMID:20823909, PMID:24220498, PMID:25797198]"]
["OS06T0690200-01",1.6478126915919402E-3,0.0610970550406761,0.85772791178427,"OS06G0690200",null,634.762435405977,502.873435832106,1052.60582529136,1008.99750488968,"no","OS06G0690200","Os06g0690200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0D3]","Serine/threonine protein kinase-related domain containing protein. (Os06t0690200-01)",6,28770374,28774431,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0323600-01",1.65476484576897E-3,0.0611964640970959,-0.845419064233746,"OS03G0323600",null,364.892903154563,438.494692212854,239.047741353007,208.076920303853,"no","OS03G0323600","Os03g0323600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWS9]","Similar to DnaJ domain containing protein, expressed. (Os03t0323600-01)",3,11730721,11731577]
["OS03T0409100-03",0.00165650287406056,0.0611964640970959,1.02301360158641,"OS03G0409100",null,245.07869117457,210.812205038775,425.42664781577,501.016342766145,"no","OS03G0409100","ATP-dependent protease La domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q75K52]","Hypothetical conserved gene. (Os03t0409100-01);Hypothetical conserved gene. (Os03t0409100-02);PUA-like domain domain containing protein. (Os03t0409100-03)",3,16836622,16840754,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0336150-01",1.6527499347662401E-3,0.0611964640970959,"-Inf","OS06G0336150",null,33.4817517281874,21.4242422608097,0,0,"no","OS06G0336150","Os06g0336150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KM20]","Hypothetical conserved gene. (Os06t0336150-01)",6,13399295,13399653]
["OS02T0666500-01",1.6632087483121301E-3,0.061369992365256296,-1.53359907934751,"OS02G0666500",null,80.5210596346662,106.021017131277,33.1739722693969,31.2603823930672,"no","OS02G0666500","Os02g0666500 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESH0]","Similar to Cytochrome P450. (Os02t0666500-01)",2,27063117,27065233,"GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0130400-03",0.00168597915695514,0.0621351449979414,-1.28374989244209,"OS03G0130400",null,222.218617199228,228.982383160724,91.4120039169407,93.9082255561365,"no","OS03G0130400","Probable adenylate kinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10S93]","Adenylate kinase, subfamily protein. (Os03t0130400-01);Similar to ESTs AU065232(E60855). (Os03t0130400-02);Non-protein coding transcript. (Os03t0130400-03)",3,1716495,1719628,"GO:0019205;GO:0016310;GO:0006139;GO:0005524;GO:0004017;GO:0016776;GO:0046939;GO:0016301;GO:0005739;GO:0009536;GO:0009507;GO:0000166;GO:0016740","nucleobase-containing compound kinase activity;phosphorylation;nucleobase-containing compound metabolic process;ATP binding;adenylate kinase activity;phosphotransferase activity, phosphate group as acceptor;nucleotide phosphorylation;kinase activity;mitochondrion;plastid;chloroplast;nucleotide binding;transferase activity","Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. [GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reaction: ATP + AMP = 2 ADP. [EC:2.7.4.3];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor). [GOC:jl];The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. [GOC:ai];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0539200-00",0.00169281772192912,0.0622923808223425,-2.99634329762648,"OS10G0539200",null,109.113689336294,73.6207833434715,15.6183699486581,7.28140817211585,"no","OS10G0539200","Os10g0539200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XX90]","Hypothetical conserved gene. (Os10t0539200-00)",10,21008520,21010089,"GO:0030163;GO:0006508;GO:0004190;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS11T0691100-00",1.6943233982510701E-3,0.0622923808223425,2.08326235393113,"OS11G0691100",null,14.2695548719662,12.3519631609255,58.4831088350167,54.329404232831,"no","OS11G0691100","Os11g0691100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5K2]","Similar to Protein kinase. (Os11t0691100-00)",11,28120864,28121925,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0413600-01",0.00170322298100394,0.0625443131197506,-0.365857397731474,"OS09G0413600",null,2107.46758852453,2117.03129209737,1589.49939823034,1688.74364691669,"no","OS09G0413600","Os09g0413600 protein [Source:UniProtKB/TrEMBL;Acc:Q6ES34]","Ribosomal protein L34e domain containing protein. (Os09t0413600-01);Hypothetical conserved gene. (Os09t0413600-02)",9,14694461,14699068,"GO:0005840;GO:0005622;GO:0006412;GO:0003735;GO:0016020;GO:0016021;GO:0022625;GO:0003723;GO:0042254","ribosome;intracellular;translation;structural constituent of ribosome;membrane;integral component of membrane;cytosolic large ribosomal subunit;RNA binding;ribosome biogenesis","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma]"]
["OS04T0338000-01",1.70653052132338E-3,0.06259054080128701,0.407761594060972,"OS04G0338000",null,4100.04815664073,4336.03079571727,5325.86576243356,5865.65504504089,"no","OS04G0338000","Probable aldo-keto reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XT99]","Similar to IN2-2 protein. (Os04t0338000-01)",4,15915699,15918901,"GO:0055114;GO:0016491","oxidation-reduction process;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS02T0724000-01",1.7169108265405E-3,0.0627225139382192,0.67459076483791,"OS02G0724000",null,230.560670514766,255.721506652558,399.505146918803,376.671206206187,"no","OS02G0724000","CONSTANS-like protein Days to heading on chromosome 2 [Source:UniProtKB/TrEMBL;Acc:O82118]","CONSTANS-like protein, Heading promotion under long-day condition (Os02t0724000-01)",2,30094300,30099072,"GO:0005622;GO:0005634;GO:0008270","intracellular;nucleus;zinc ion binding","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0722800-01",1.7183406705384102E-3,0.0627225139382192,0.524476484914636,"OS03G0722800",null,503.462701332826,566.727035531536,764.722255002402,774.650995994502,"no","OS03G0722800","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10DR5]","Similar to F-box domain containing protein. (Os03t0722800-01);Similar to F-box domain containing protein. (Os03t0722800-02)",3,29329004,29336560]
["OS03T0810800-01",1.7146804263373E-3,0.0627225139382192,-0.44338905077775603,"OS03G0810800",null,1277.12516104097,1412.7624378841,983.685955278249,994.470914879449,"no","OS03G0810800","Xanthoxin dehydrogenase [Source:Projected from Arabidopsis thaliana (AT1G52340) UniProtKB/Swiss-Prot;Acc:Q9C826]","Similar to Short-chain alcohol dehydrogenase. (Os03t0810800-01)",3,33938998,33941323,"GO:0055114;GO:0004022;GO:0010301;GO:0006561;GO:0009408;GO:0009414;GO:0009688;GO:0009750;GO:0010115;GO:0005829","oxidation-reduction process;alcohol dehydrogenase (NAD) activity;xanthoxin dehydrogenase activity;proline biosynthetic process;response to heat;response to water deprivation;abscisic acid biosynthetic process;response to fructose;regulation of abscisic acid biosynthetic process;cytosol","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+. [EC:1.1.1.1];Catalysis of the reaction: NAD(+) + xanthoxin = (+)-abscisic aldehyde + H(+) + NADH. [EC:1.1.1.288, RHEA:12551];The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. [ISBN:0387969845];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. [GOC:sm];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS07T0129300-00",0.00171650965785122,0.0627225139382192,2.80130920104223,"OS07G0129300",null,95.4420416172217,56.4991132628233,383.861891060879,675.278473779066,"no","OS07G0129300","Os07g0129300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YT69]","Similar to PR1a protein. (Os07t0129300-00)",7,1523654,1524512,"GO:0005576","extracellular region","The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS06T0710300-01",1.7238066183904702E-3,0.0627720379083024,0.7871807132408941,"OS06G0710300",null,204.870037804657,234.687300057584,410.771833100473,347.771754122872,"no","OS06G0710300","Os06g0710300 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9G6]","Uncharacterised conserved protein UCP022348 domain containing protein. (Os06t0710300-01)",6,30036069,30037729,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0376800-01",1.7229941096033902E-3,0.0627720379083024,0.45563678497719906,"OS09G0376800",null,642.817320161031,621.138186866243,878.999447275374,854.373945441145,"no","OS09G0376800","Os09g0376800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J256]","Similar to Trehalose-6-phosphate synthase (Fragment). (Os09t0376800-01)",9,12646004,12650074,"GO:0070413;GO:0005992;GO:0016791;GO:0005737;GO:0016311;GO:0003824","trehalose metabolism in response to stress;trehalose biosynthetic process;phosphatase activity;cytoplasm;dephosphorylation;catalytic activity","The chemical reactions and pathways involving trehalose that occur as a result of a stimulus indicating the organism is under stress. [GOC:jp, GOC:mah, PMID:9797333];The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0634700-01",0.00172860872762297,0.062871968864687,0.845364632837111,"OS02G0634700",null,365.997870779542,374.676215881406,589.325860315168,741.457194885562,"no","OS02G0634700","Serine carboxypeptidase-like 34 [Source:Projected from Arabidopsis thaliana (AT5G23210) UniProtKB/Swiss-Prot;Acc:Q0WPR4]","Similar to Serine carboxypeptidase II-like protein. (Os02t0634700-01);Similar to lysosomal protective protein. (Os02t0634700-02)",2,25442875,25450093,"GO:0004185;GO:0004180;GO:0006508;GO:0016787;GO:0008233;GO:0005773;GO:0051603;GO:0009505","serine-type carboxypeptidase activity;carboxypeptidase activity;proteolysis;hydrolase activity;peptidase activity;vacuole;proteolysis involved in cellular protein catabolic process;plant-type cell wall","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208]"]
["OS03T0806800-02",1.74809260237039E-3,0.06342960236059379,-0.48242332485007505,"OS03G0806800",null,3406.36946953452,3866.79245313482,2551.14490621446,2654.79757003239,"no","OS03G0806800","Os03g0806800 protein [Source:UniProtKB/TrEMBL;Acc:Q84M60]","Conserved hypothetical protein. (Os03t0806800-01);Conserved hypothetical protein. (Os03t0806800-02)",3,33716907,33717725]
["OS12T0576600-01",1.7462350311136402E-3,0.06342960236059379,"-Inf","OS12G0576600",null,91.7328527483543,46.3198618534707,0,0,"no","OS12G0576600","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q0IMD7]","Metallophosphoesterase domain containing protein. (Os12t0576600-01);Metallophosphoesterase domain containing protein. (Os12t0576600-02)",12,23805152,23808859,"GO:0003993;GO:0016311;GO:0046872;GO:0016787","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS08T0398400-01",0.00175862824501812,0.0637068743127469,-0.42300987723565103,"OS08G0398400","HIR1",2743.67430818848,3017.88981239779,2075.52550426156,2221.83450492873,"no","OS08G0398400","Hypersensitive-induced response protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZIV7]","Hypersensitive induced reaction protein, Bacterial pathogen resistance (Os08t0398400-01)",8,19011905,19015935,"GO:0005886;GO:0016020","plasma membrane;membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0553800-01",1.7599044880845201E-3,0.0637068743127469,0.49538888385134505,"OS10G0553800",null,628.879668285937,637.155433051072,841.057767535885,943.672793490715,"no","OS10G0553800","Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:Q336T9]","Flavin-containing monooxygenase FMO family protein. (Os10t0553800-01)",10,21724435,21727179,"GO:0004497;GO:0055114;GO:0004499;GO:0050661;GO:0050660;GO:0016491","monooxygenase activity;oxidation-reduction process;N,N-dimethylaniline monooxygenase activity;NADP binding;flavin adenine dinucleotide binding;oxidoreductase activity","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. [EC:1.14.13.8];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS06T0113900-05",1.7651352900248701E-3,0.0638206075512897,-0.9863454690413551,"OS06G0113900",null,1024.88723101402,1006.9739561939,459.065907616289,566.525709053299,"no","OS06G0113900","Os06g0113900 protein [Source:UniProtKB/TrEMBL;Acc:Q9LWT7]","Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-01);Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-02);Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-03);Similar to cDNA clone:J033107D23, full insert sequence. (Os06t0113900-04);Similar to cDNA clone:J033107D23, full insert sequence. (Os06t0113900-05);Hypothetical conserved gene. (Os06t0113900-06)",6,796330,804194,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0223600-01",1.76948738159426E-3,0.0639023386317587,-0.374471606428381,"OS01G0223600",null,2330.01445980819,2513.62450324833,1834.3255254843,1901.99889122818,"no","OS01G0223600","Os01g0223600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JPG8]","Similar to Pto kinase interactor 1-like protein. (Os01t0223600-01)",1,6766511,6769519,"GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0409100-01",1.7789048709323301E-3,0.0640909217178354,1.75124993226236,"OS03G0409100",null,60.4640379091546,41.6063109213729,144.859778295778,198.760162375122,"no","OS03G0409100","ATP-dependent protease La domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q75K52]","Hypothetical conserved gene. (Os03t0409100-01);Hypothetical conserved gene. (Os03t0409100-02);PUA-like domain domain containing protein. (Os03t0409100-03)",3,16836622,16840754,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS12T0222800-00",0.0017785957650968,0.0640909217178354,-1.60178674268617,"OS12G0222800",null,77.8240666537138,80.7424671174709,29.7743076752298,22.468399845017,"no","OS12G0222800","Os12g0222800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y873]","Leucine-rich repeat, N-terminal domain containing protein. (Os12t0222800-00)",12,6647365,6650382,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0674400-01",0.00178444523752303,0.0641316104137214,0.33261881704080304,"OS04G0674400",null,2329.59965445894,2299.88814067662,2920.02963969562,2909.87142282905,"no","OS04G0674400","Anamorsin homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XQ97]","Similar to Anamorsin (Cytokine induced apoptosis inhibitor 1) (CUA001). Splice isoform 2. (Os04t0674400-01)",4,34423647,34426231,"GO:0005758;GO:0016226;GO:0005737;GO:0051537;GO:0051536;GO:0005739;GO:0004553;GO:0046872;GO:0005975;GO:0016787;GO:0009055;GO:0043066","mitochondrial intermembrane space;iron-sulfur cluster assembly;cytoplasm;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;mitochondrion;hydrolase activity, hydrolyzing O-glycosyl compounds;metal ion binding;carbohydrate metabolic process;hydrolase activity;electron carrier activity;negative regulation of apoptotic process","The region between the inner and outer lipid bilayers of the mitochondrial envelope. [GOC:mah];The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. [GOC:jl, GOC:mtg_apoptosis]"]
["OS06T0142700-01",0.00178473049230443,0.0641316104137214,-0.446675366368513,"OS06G0142700",null,3485.84840443745,3726.17555354585,2506.58631647296,2785.10469383233,"no","OS06G0142700","Os06g0142700 protein [Source:UniProtKB/TrEMBL;Acc:Q9SNQ3]","Cytochrome c oxidase, subunit Vb family protein. (Os06t0142700-01)",6,2243776,2246692,"GO:0005751;GO:0005740;GO:0042776;GO:0006123;GO:0004129;GO:1902600","mitochondrial respiratory chain complex IV;mitochondrial envelope;mitochondrial ATP synthesis coupled proton transport;mitochondrial electron transport, cytochrome c to oxygen;cytochrome-c oxidase activity;hydrogen ion transmembrane transport","A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2). [GOC:mtg_sensu, ISBN:0198547684];The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. [GOC:ai, GOC:pz];The transport of protons across a mitochondrial membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. [GOC:mtg_sensu, ISBN:0716731363];The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV. [ISBN:0716731363];Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O. [EC:1.9.3.1];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie]"]
["OS10T0579100-01",1.7863315155170502E-3,0.0641316104137214,0.6128110224186131,"OS10G0579100",null,2142.08294309622,2544.00882356219,3569.64072784905,3596.49927258163,"no","OS10G0579100","Early-responsive to dehydration protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XBT3]","Protein of unknown function DUF221 domain containing protein. (Os10t0579100-01)",10,23088168,23093415,"GO:0008137;GO:0055114;GO:0009055;GO:0016020;GO:0016021;GO:0005794;GO:0005886;GO:0009506","NADH dehydrogenase (ubiquinone) activity;oxidation-reduction process;electron carrier activity;membrane;integral component of membrane;Golgi apparatus;plasma membrane;plasmodesma","Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol. [EC:1.6.5.3];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS03T0780800-01",1.80461858849179E-3,0.0646530448053865,-0.9524308500271761,"OS03G0780800",null,546.687700586639,565.5579198109,261.664904703502,313.100274675644,"no","OS03G0780800","Fatty acid hydroxylase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q9AY73]","Fatty acid 2-hydroxylase, Resistance to rice blast fungus infection (Os03t0780800-01);Fatty acid hydroxylase domain containing protein. (Os03t0780800-02)",3,32375907,32378463,"GO:0080132;GO:0006631;GO:0005783;GO:0008610;GO:0005506;GO:0016491;GO:0055114;GO:0016020;GO:0016021","fatty acid alpha-hydroxylase activity;fatty acid metabolic process;endoplasmic reticulum;lipid biosynthetic process;iron ion binding;oxidoreductase activity;oxidation-reduction process;membrane;integral component of membrane","Catalysis of the conversion of a fatty acid to an alpha-hydroxylated fatty acid. A hydroxyl group is added to the second carbon, counted from the carboxyl end, of a fatty acid chain. [PMID:19054355];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0819700-01",0.00180508795558375,0.0646530448053865,-0.533807295569058,"OS03G0819700",null,759.344169972485,754.499083079864,486.876828306736,558.779335276076,"no","OS03G0819700","Os03g0819700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DMA9]","Conserved hypothetical protein. (Os03t0819700-01)",3,34396969,34400184]
["OS02T0273100-02",1.8140179928564E-3,0.0648968123158651,-0.46456404294833303,"OS02G0273100",null,1205.75567561634,1210.23726126541,833.774086172495,917.071914423018,"no","OS02G0273100","Os02g0273100 protein [Source:UniProtKB/TrEMBL;Acc:Q0E243]","Aminotransferase, class IV family protein. (Os02t0273100-01);Aminotransferase, class IV family protein. (Os02t0273100-02)",2,9950654,9954960,"GO:0008483;GO:0008152;GO:0003824;GO:0016740","transaminase activity;metabolic process;catalytic activity;transferase activity","Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0822900-01",1.8199472603346101E-3,0.0649355729020286,-2.19446143025717,"OS02G0822900",null,240.543924984572,134.84226450677,38.0524976031317,43.9599127402507,"no","OS02G0822900","Os02g0822900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRD5]","Hypothetical conserved gene. (Os02t0822900-01)",2,35334956,35340821,"GO:0016567;GO:0004842;GO:0006468;GO:0005524;GO:0004672","protein ubiquitination;ubiquitin-protein transferase activity;protein phosphorylation;ATP binding;protein kinase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0760200-01",1.8245127245048501E-3,0.0649355729020286,2.00211921452629,"OS03G0760200",null,73.3862821986831,78.2291000191947,223.436460285055,383.916571264856,"no","OS03G0760200","Os03g0760200 protein [Source:UniProtKB/TrEMBL;Acc:Q0DND2]","Cytochrome P450 family protein. (Os03t0760200-01)",3,31443454,31446045,"GO:0098542;GO:0042343;GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","defense response to other organism;indole glucosinolate metabolic process;secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism. [GOC:dos];The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan. [http://www.onelook.com/];The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0598800-01",0.00181793569419609,0.0649355729020286,-1.34292423846387,"OS04G0598800",null,114.00560214889,157.374676827605,50.2705374588901,56.713210117157,"no","OS04G0598800",null,"Similar to Wall-associated kinase-like protein. (Os04t0598800-01)",4,30209131,30213639,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0670000-01",1.8275794690541102E-3,0.0649355729020286,0.39810556710306905,"OS04G0670000",null,1201.70037100344,1292.83881084353,1596.25348919804,1690.99131007498,"no","OS04G0670000","Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:Q7XR59]","Reticulon family protein. (Os04t0670000-01)",4,34166490,34169404,"GO:0005789;GO:0005783;GO:0016020;GO:0016021","endoplasmic reticulum membrane;endoplasmic reticulum;membrane;integral component of membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0603000-01",1.82785391122495E-3,0.0649355729020286,-0.40931114491289206,"OS06G0603000","HO1",3633.64022275424,3932.04160622794,2730.02277675801,2966.80566649203,"no","OS06G0603000","Heme oxygenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q69XJ4]","Heme-oxygenase, Phytochrome chromophore biosynthesis, Nitric oxide- and auxin-induced lateral root formation (Os06t0603000-01)",6,23853783,23858023,"GO:0006788;GO:0004392;GO:0009536;GO:0009507;GO:0015979;GO:0055114;GO:0046872;GO:0016491;GO:0010229;GO:0009648;GO:0048573","heme oxidation;heme oxygenase (decyclizing) activity;plastid;chloroplast;photosynthesis;oxidation-reduction process;metal ion binding;oxidoreductase activity;inflorescence development;photoperiodism;photoperiodism, flowering","The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in heme. [GOC:mah];Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O. [EC:1.14.99.3];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. [GOC:tb];Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:0582015952, ISBN:0697037754, ISBN:0709408862];A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:0582015952, ISBN:0697037754, ISBN:0709408862]"]
["OS10T0363300-01",1.8256771774040402E-3,0.0649355729020286,-0.399462321644164,"OS10G0363300",null,1989.58365071985,2190.41480053745,1607.961949999,1561.06534575379,"no","OS10G0363300","Os10g0363300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XT84]","Acetyl-CoA carboxylase (EC 6.4.1.2) (Os10t0363300-01)",10,11283659,11284909,"GO:0005829;GO:0004075;GO:0003824;GO:0006631;GO:0008152;GO:0006629;GO:0016874;GO:0005737;GO:0006633;GO:0046872;GO:0005524;GO:0000166;GO:0003989;GO:2001295","cytosol;biotin carboxylase activity;catalytic activity;fatty acid metabolic process;metabolic process;lipid metabolic process;ligase activity;cytoplasm;fatty acid biosynthetic process;metal ion binding;ATP binding;nucleotide binding;acetyl-CoA carboxylase activity;malonyl-CoA biosynthetic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein. [EC:6.3.4.14];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. [EC:6.4.1.2];The chemical reactions and pathways resulting in the formation of malonyl-CoA, the S-malonyl derivative of coenzyme A. [CHEBI:15531, GOC:yaf, UniPathway:UPA00655]"]
["OS01T0717000-05",1.8331962810398201E-3,0.0649742607637224,-0.552360339723579,"OS01G0717000",null,675.400629077338,743.228565610232,501.280841607696,466.087482330494,"no","OS01G0717000","Os01g0717000 protein [Source:UniProtKB/TrEMBL;Acc:Q5JMB6]","Similar to GmCK1p (EC 2.7.1.32). (Os01t0717000-01);Similar to Choline kinase. (Os01t0717000-02);Similar to Choline kinase. (Os01t0717000-05)",1,29842914,29846824,"GO:0016310;GO:0016301","phosphorylation;kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS02T0594100-01",1.8327670463649701E-3,0.0649742607637224,0.35476259187305204,"OS02G0594100",null,1478.93743708735,1483.26490957447,1924.09039162502,1863.90030018663,"no","OS02G0594100","Os02g0594100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZH81]","Similar to Protein kinase ATN1. (Os02t0594100-01)",2,23000073,23005321,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0004674;GO:0016310;GO:0016301;GO:0005524;GO:0000166","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;protein serine/threonine kinase activity;phosphorylation;kinase activity;ATP binding;nucleotide binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS07T0282500-01",1.83594933219128E-3,0.0649964356861041,-0.8589383949139361,"OS07G0282500",null,215.234005190811,227.448270369599,129.771677641905,114.304791689317,"no","OS07G0282500","Aldehyde oxidase-like [Source:UniProtKB/TrEMBL;Acc:Q6Z5T5]","Similar to Aldehyde oxidase 3 (EC 1.2.3.1) (AtAO-3) (AtAO4). (Os07t0282500-01)",7,10765848,10767128,"GO:0005829;GO:0051537;GO:0051536;GO:0016614;GO:0050660;GO:0046872;GO:0005506;GO:0016491;GO:0055114;GO:0003824;GO:0016020;GO:0016021;GO:0004854;GO:0016903;GO:0009115","cytosol;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;metal ion binding;iron ion binding;oxidoreductase activity;oxidation-reduction process;catalytic activity;membrane;integral component of membrane;xanthine dehydrogenase activity;oxidoreductase activity, acting on the aldehyde or oxo group of donors;xanthine catabolic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: xanthine + NAD+ + H2O = urate + NADH + H+. [EC:1.17.1.4];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];The chemical reactions and pathways resulting in the breakdown of xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. [GOC:go_curators]"]
["OS01T0760701-00",1.84371238515022E-3,0.0650296978667346,0.422413225565121,"OS01G0760701",null,3285.58132501091,3333.92318418358,4186.16060840481,4685.08358153724,"no","OS01G0760701","Os01g0760701 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDS7]","Hypothetical gene. (Os01t0760701-00)",1,31998916,32001471]
["OS03T0131300-02",0.00184183773356942,0.0650296978667346,-0.36133239184563304,"OS03G0131300",null,2318.88309140177,2463.86026748269,1845.62695427284,1877.47722707909,"no","OS03G0131300","Os03g0131300 protein [Source:UniProtKB/TrEMBL;Acc:Q10S80]","Ubiquilin domain containing protein. (Os03t0131300-01);Similar to Ubiquitin family protein, expressed. (Os03t0131300-02)",3,1791608,1796372]
["OS03T0364700-01",1.8475927973331402E-3,0.0650296978667346,1.10591434665241,"OS03G0364700",null,337.373047330057,325.268363237704,820.567961134199,605.669908865676,"no","OS03G0364700","Os03g0364700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DRQ1]","Transcription elongation factor, TFIIS/CRSP70, N-terminal domain containing protein. (Os03t0364700-01)",3,14233207,14236034,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS03T0804500-01",1.8410479066909102E-3,0.0650296978667346,-1.14295622711769,"OS03G0804500","GER7",379.162458026529,334.532335608398,137.574414411322,185.608520458836,"no","OS03G0804500","Germin-like protein 3-7 [Source:UniProtKB/Swiss-Prot;Acc:Q10BU2]","Similar to Germin-like protein subfamily T member 1 precursor. (Os03t0804500-01)",3,33586465,33587320,"GO:0005618;GO:0045735;GO:0030145;GO:0048046;GO:0046872;GO:0005576","cell wall;nutrient reservoir activity;manganese ion binding;apoplast;metal ion binding;extracellular region","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Functions in the storage of nutritious substrates. [GOC:ai];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS08T0203400-01",1.8494623860306702E-3,0.0650296978667346,1.67508084426592,"OS08G0203400",null,221.166481448402,151.913972264182,510.377091506871,681.007764945852,"no","OS08G0203400","Os08g0203400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZKW7]","Protein kinase, core domain containing protein. (Os08t0203400-01)",8,6015745,6023225,"GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0367900-01",1.8496598404750101E-3,0.0650296978667346,-0.5183027666823851,"OS09G0367900",null,1751.55488297433,1993.85268277753,1265.05583103437,1349.96049036841,"no","OS09G0367900","Os09g0367900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLD8]","Conserved hypothetical protein. (Os09t0367900-01);Hypothetical conserved gene. (Os09t0367900-02)",9,12126815,12127993]
["OS01T0810800-01",1.8551409653808902E-3,0.0651097813364802,-1.10577181789214,"OS01G0810800",null,3525.61807131509,4018.635972925,1504.21072998402,2001.25575125132,"no","OS01G0810800","Os01g0810800 protein [Source:UniProtKB/TrEMBL;Acc:B7FAC9]","Hypothetical conserved gene. (Os01t0810800-01)",1,34445750,34454439,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0111600-01",1.8561999065224602E-3,0.0651097813364802,0.44070480559941505,"OS12G0111600",null,1152.17513978062,1264.88899801805,1700.80367774052,1579.79828554195,"no","OS12G0111600","Hypoxia induced protein conserved region containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QYP0]","Hypoxia induced protein conserved region family protein. (Os12t0111600-01)",12,607455,608215,"GO:0031305;GO:0097249;GO:0033617;GO:0016020;GO:0016021","integral component of mitochondrial inner membrane;mitochondrial respiratory chain supercomplex;mitochondrial respiratory chain complex IV assembly;membrane;integral component of membrane","The component of the mitochondrial inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];A set of respiratory enzyme complexes of the mitochondrial inner membrane (including, for example, Complex II, Complex III, Complex IV, or F1-F0 ATPase) arranged to form a large supercomplex. [GOC:mcc, PMID:21909073, PMID:22342701];The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the mitochondrial inner membrane. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0570600-00",1.8766755730922602E-3,0.0657525138865995,-6.18991722960154,"OS06G0570600","CYP701A7",27.3372272936465,61.2894911172064,1.21398665349636,0,"no","OS06G0570600","Ent-kaurene oxidase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:C7J3A2]","Similar to Ent-kaurene oxidase. (Os06t0570600-00)",6,22092977,22095900,"GO:0009707;GO:0005783;GO:0010241;GO:0009740;GO:0009686;GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016020;GO:0016021","chloroplast outer membrane;endoplasmic reticulum;ent-kaurene oxidation to kaurenoic acid;gibberellic acid mediated signaling pathway;gibberellin biosynthetic process;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;membrane;integral component of membrane","The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope. [GOC:tb];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase. [EC:1.14.13.78, GOC:tb];A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm];The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [ISBN:0387969845];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0289700-01",0.00188165237003214,0.0658513667917777,-4.90042405469175,"OS11G0289700",null,267.044526889652,374.676215881406,3.90282026698787,17.5839650961003,"no","OS11G0289700","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R6X3]","Cytochrome P450 family protein. (Os11t0289700-01)",11,10474866,10477658,"GO:0016125;GO:0010268;GO:0007275;GO:0004497;GO:0016132;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;monooxygenase activity;brassinosteroid biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0678700-01",1.8850351720043302E-3,0.065894272969195,-1.14000559289413,"OS04G0678700","PORA",121.291216411712,136.900925033591,57.566598938071,59.5901039367843,"no","OS04G0678700","Protochlorophyllide reductase A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XKF3]","Similar to Protochlorophyllide reductase (EC 1.3.1.33) (PCR) (NADPH- protochlorophyllide oxidoreductase) (POR) (Fragment). (Os04t0678700-01)",4,34663055,34664559,"GO:0015995;GO:0009536;GO:0009507;GO:0015979;GO:0055114;GO:0016491;GO:0016630","chlorophyll biosynthetic process;plastid;chloroplast;photosynthesis;oxidation-reduction process;oxidoreductase activity;protochlorophyllide reductase activity","The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the reaction: chlorophyllide a + NADP+ = protochlorophyllide + NADPH + H+. [EC:1.3.1.33]"]
["OS01T0212400-01",0.00191211589969332,0.0663293601123989,-0.38153225607564906,"OS01G0212400","NCL1",6625.15047627,7249.57304519984,5216.11928682928,5434.42210164477,"no","OS01G0212400","Sodium/calcium exchanger NCL1 [Source:UniProtKB/Swiss-Prot;Acc:Q5QNI2]","EF-Hand type domain containing protein. (Os01t0212400-01)",1,6134203,6139136,"GO:0055074;GO:0005432;GO:0005509;GO:0006814;GO:0035725;GO:0015297;GO:0006816;GO:0005886;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020","calcium ion homeostasis;calcium:sodium antiporter activity;calcium ion binding;sodium ion transport;sodium ion transmembrane transport;antiporter activity;calcium ion transport;plasma membrane;transport;transmembrane transport;ion transport;integral component of membrane;membrane","Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell. [GOC:ceb, GOC:jid, GOC:mah];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in). [GOC:curators, PMID:16371597];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:vw];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0216000-01",1.9003176126998701E-3,0.0663293601123989,-3.38299990250749,"OS01G0216000",null,5555.6504920281,6419.73033528142,310.048479545059,837.853717890474,"no","OS01G0216000","Os01g0216000 protein [Source:UniProtKB/TrEMBL;Acc:Q9LHW4]","Lipase, GDSL domain containing protein. (Os01t0216000-01)",1,6340836,6344286,"GO:0016788;GO:0004553;GO:0005975","hydrolase activity, acting on ester bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process","Catalysis of the hydrolysis of any ester bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS01T0310100-01",0.00191568307000373,0.0663293601123989,-0.495781136012362,"OS01G0310100",null,774.632978763877,774.056358084663,579.568809647698,518.726970334958,"no","OS01G0310100","Os01g0310100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V257]","Similar to PLDP1 (PHOSPHOLIPASE D P1); phospholipase D. (Os01t0310100-01)",1,11625271,11637356]
["OS01T0857200-01",0.00191110806440698,0.0663293601123989,1.38257371507383,"OS01G0857200",null,62.1744890849954,45.2905315900601,124.890248543612,155.306625608792,"no","OS01G0857200","Alkyl transferase [Source:UniProtKB/TrEMBL;Acc:Q94DE7]","Di-trans-poly-cis-decaprenylcistransferase family protein. (Os01t0857200-01)",1,37034026,37035656,"GO:0005829;GO:0016765;GO:0016740;GO:0002094;GO:0016094","cytosol;transferase activity, transferring alkyl or aryl (other than methyl) groups;transferase activity;polyprenyltransferase activity;polyprenol biosynthetic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the transfer of multiple prenyl groups from one compound (donor) to another (acceptor). [GOC:hjd];The chemical reactions and pathways resulting in the formation of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. [GOC:go_curators, http://www.chem.qmul.ac.uk/iupac/misc/prenol.html#p2]"]
["OS03T0649000-01",1.9054675459744801E-3,0.0663293601123989,-0.465763758674031,"OS03G0649000",null,3317.85337988761,2912.11107932825,2242.80165668944,2268.23864225718,"no","OS03G0649000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10G00]","Conserved hypothetical protein. (Os03t0649000-01)",3,25147591,25151544,"GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055","cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity","The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS03T0700700-04",0.00191213202774414,0.0663293601123989,-20.0327815850909,"OS03G0700700",null,170.1763856516,98.093966843147,0,2.5009472184613904E-4,"no","OS03G0700700","Probable linoleate 9S-lipoxygenase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q53RB0]","Similar to Lipoxygenase (Fragment). (Os03t0700700-01);Similar to Lipoxygenase. (Os03t0700700-02);Similar to Lipoxygenase. (Os03t0700700-03);Similar to Lipoxygenase. (Os03t0700700-04)",3,28106903,28113300,"GO:0031408;GO:0006633;GO:0051213;GO:0016702;GO:0046872;GO:0055114;GO:0016491;GO:0006631;GO:0006629","oxylipin biosynthetic process;fatty acid biosynthetic process;dioxygenase activity;oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;metal ion binding;oxidation-reduction process;oxidoreductase activity;fatty acid metabolic process;lipid metabolic process","The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma]"]
["OS06T0154400-01",1.9140504674106601E-3,0.0663293601123989,0.5883713030163741,"OS06G0154400",null,394.451266817922,356.148271140018,593.228680582156,535.334048481275,"no","OS06G0154400","Os06g0154400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT46]","Domain of unknown function DUF676, lipase-like domain containing protein. (Os06t0154400-01)",6,2803042,2806247]
["OS08T0119000-01",1.9157867864457502E-3,0.0663293601123989,"Inf","OS08G0119000",null,0,0,54.5349439092505,136.502506822406,"no","OS08G0119000","COP9 signalosome complex subunit 3 [Source:Projected from Arabidopsis thaliana (AT5G14250) UniProtKB/Swiss-Prot;Acc:Q8W575]","CSN3 (Fragment). (Os08t0119000-01);CSN3 (Fragment). (Os08t0119000-02)",8,1050637,1054921,"GO:0006511;GO:0008180;GO:0000338;GO:0010971;GO:0005829","ubiquitin-dependent protein catabolic process;COP9 signalosome;protein deneddylation;positive regulation of G2/M transition of mitotic cell cycle;cytosol","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. [PMID:11019806, PMID:12186635, PMID:14570571];The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc];Any process that increases the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:dph, GOC:mtg_cell_cycle, GOC:tb];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS09T0482400-01",1.9170209799439701E-3,0.0663293601123989,0.37488071032018405,"OS09G0482400","HSP81-3",6413.57810208833,6465.52806455387,8605.80983409018,8094.94350738155,"no","OS09G0482400","Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q0J0U8]","Similar to Heat shock protein 81-3. (Os09t0482400-01);Similar to Heat shock protein 81-3. (Os09t0482400-03)",9,18525590,18529774,"GO:0006950;GO:0006457;GO:0051082;GO:0005524;GO:0005737;GO:0000166","response to stress;protein folding;unfolded protein binding;ATP binding;cytoplasm;nucleotide binding","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS01T0252100-01",0.00192311115498428,0.0663897084825758,-0.49677158042475,"OS01G0252100",null,2614.80350584408,2877.74714513866,1976.09264452141,1916.42799356519,"no","OS01G0252100","Os01g0252100 protein [Source:UniProtKB/TrEMBL;Acc:Q9LIS6]","Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-). (Os01t0252100-01);Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-). (Os01t0252100-02);Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-). (Os01t0252100-03)",1,8329791,8333933,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016310;GO:0016301","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;phosphorylation;kinase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS01T0780800-01",1.9211958051637502E-3,0.0663897084825758,0.585764276031963,"OS01G0780800",null,528.287292798689,503.122029158911,713.148732294651,834.825295563796,"no","OS01G0780800","Os01g0780800 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZAW0]","SAND domain containing protein. (Os01t0780800-01);Similar to predicted protein. (Os01t0780800-02)",1,33073583,33078968,"GO:0005829;GO:0005634;GO:0003677","cytosol;nucleus;DNA binding","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS10T0516200-00",0.0019277675012502,0.0664753416458196,-0.5842606691145841,"OS10G0516200",null,588.109511508891,602.817288010386,368.816515230353,425.521013914739,"no","OS10G0516200","Os10g0516200 protein [Source:UniProtKB/TrEMBL;Acc:Q94HZ8]","Serine/threonine protein kinase domain containing protein. (Os10t0516200-00)",10,19899132,19900795,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0262500-01",1.9457972509999701E-3,0.0667955029354507,-1.4632640227288,"OS01G0262500",null,190.600482932691,256.303235589204,69.2750597390346,92.8042602294181,"no","OS01G0262500","Os01g0262500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V1A2]","TRAM/LAG1/CLN8 homology domain domain containing protein. (Os01t0262500-01)",1,8883493,8885388,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0181700-01",1.9426860202987602E-3,0.0667955029354507,-0.513821102894508,"OS07G0181700",null,732.047742076063,656.712708055871,474.031702496315,498.607512572884,"no","OS07G0181700","Os07g0181700 protein [Source:UniProtKB/TrEMBL;Acc:Q0D863]","Guanylate-binding protein family protein. (Os07t0181700-01)",7,4312794,4318815,"GO:0005525;GO:0000166;GO:0003924;GO:0016020;GO:0016021","GTP binding;nucleotide binding;GTPase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0409000-01",0.00194454798567223,0.0667955029354507,-1.14248451804496,"OS09G0409000",null,119.25270857286,107.050347394687,51.7123685375892,50.7981213887341,"no","OS09G0409000","Os09g0409000 protein [Source:UniProtKB/TrEMBL;Acc:Q0J1V6]","Conserved hypothetical protein. (Os09t0409000-01)",9,14473052,14474028]
["OS11T0112000-01",1.9418028052417802E-3,0.0667955029354507,0.5326318817765581,"OS11G0112000",null,1572.54849968186,1642.96142959991,2492.81256728096,2158.63391023813,"no","OS11G0112000","Os11g0112000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZ12]","Similar to Hypoxia induced protein conserved region containing protein, expressed. (Os11t0112000-01)",11,563239,563851]
["OS07T0566200-01",1.9513210465304301E-3,0.066834933423316,-0.32904045175332,"OS07G0566200",null,2299.4368422254,2337.60902820515,1829.44700015056,1861.94652628706,"no","OS07G0566200","Probable protein phosphatase 2C 64 [Source:UniProtKB/Swiss-Prot;Acc:Q8H4S6]","Similar to catalytic/ protein phosphatase type 2C. (Os07t0566200-01);Similar to catalytic/ protein phosphatase type 2C. (Os07t0566200-02)",7,22726263,22731186,"GO:0004721;GO:0006470;GO:0004722;GO:0046872;GO:0016787;GO:0003824","phosphoprotein phosphatase activity;protein dephosphorylation;protein serine/threonine phosphatase activity;metal ion binding;hydrolase activity;catalytic activity","Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0530400-01",0.00195044937222989,0.066834933423316,0.39561335444599205,"OS08G0530400",null,1552.2323835452,1490.51700915759,1929.954759221,2072.78790979037,"no","OS08G0530400","Moco containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LP96]","Moco containing protein (Moco containing protein(OsMCP)). (Os08t0530400-01);Similar to sulfite oxidase. (Os08t0530400-02)",8,26417799,26422222,"GO:0030151;GO:0016491;GO:0055114;GO:0042128","molybdenum ion binding;oxidoreductase activity;oxidation-reduction process;nitrate assimilation","Interacting selectively and non-covalently with molybdenum (Mo) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899]"]
["OS05T0495700-01",0.00195540384983111,0.0668997742665622,-0.880857522900726,"OS05G0495700",null,231.233278836005,217.123489172572,124.597937757887,118.879763936524,"no","OS05G0495700","Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q65X70]","Similar to Glycerol-3-phosphate dehydrogenase. (Os05t0495700-01);Similar to Glycerol-3-phosphate dehydrogenase. (Os05t0495700-02)",5,24357908,24361162,"GO:0005829;GO:0046168;GO:0004367;GO:0051287;GO:0009331;GO:0006072;GO:0005737;GO:0016616;GO:0055114;GO:0016491;GO:0005975","cytosol;glycerol-3-phosphate catabolic process;glycerol-3-phosphate dehydrogenase [NAD+] activity;NAD binding;glycerol-3-phosphate dehydrogenase complex;glycerol-3-phosphate metabolic process;cytoplasm;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:ai];Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+. [EC:1.1.1.8, EC:1.1.1.94];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate. [EC:1.1.5.3];The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:go_curators, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS02T0633300-01",1.95811824269363E-3,0.066917705314067,-0.561546667717013,"OS02G0633300",null,1081.28817704238,1251.25034168897,765.278993359417,815.191649717067,"no","OS02G0633300","Os02g0633300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VM01]","EspB-like protein. (Os02t0633300-01)",2,25403237,25404058,"GO:0055085;GO:0016020;GO:0016021","transmembrane transport;membrane;integral component of membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0650000-02",1.96866402374006E-3,0.0671511538548817,0.358831897072502,"OS04G0650000",null,6170.69639705973,5801.69459625129,7556.66536129662,7796.575245303,"no","OS04G0650000","Os04g0650000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFN4]","Similar to Oryzain alpha chain precursor (EC 3.4.22.-). (Os04t0650000-01);Similar to Oryzain alpha chain precursor (EC 3.4.22.-). (Os04t0650000-02);Similar to cDNA clone:J013002H09, full insert sequence. (Os04t0650000-03)",4,33123327,33126987,"GO:0006508;GO:0008234","proteolysis;cysteine-type peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE]"]
["OS12T0176200-01",0.00196934517720522,0.0671511538548817,4.72328126420896,"OS12G0176200","NIFU1",2.03850783885231,1.02933026341046,37.0767925363847,43.9599127402507,"no","OS12G0176200","NifU-like protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84LK7]","Similar to Nitrogen fixation like protein. (Os12t0176200-01)",12,3867731,3869803,"GO:0016226;GO:0005886;GO:0006952;GO:0009570;GO:0009536;GO:0009507;GO:0005506;GO:0051536","iron-sulfur cluster assembly;plasma membrane;defense response;chloroplast stroma;plastid;chloroplast;iron ion binding;iron-sulfur cluster binding","The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai]"]
["OS05T0524575-00",1.9776422866189403E-3,0.067358893133536,-1.52134971367696,"OS05G0524575",null,161.980500650041,160.891461374964,43.8980914497913,68.5775387299403,"no","OS05G0524575","Os05g0524575 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPS4]","Hypothetical protein. (Os05t0524575-00)",5,26120568,26127026]
["OS04T0667400-01",0.00198361703413257,0.0674120885726567,-0.71617229113309,"OS04G0667400",null,342.801495604647,357.827310198162,228.120960209831,198.359018003121,"no","OS04G0667400","OSJNBa0043A12.2 protein [Source:UniProtKB/TrEMBL;Acc:Q7XR83]","2OG-Fe(II) oxygenase domain containing protein. (Os04t0667400-01)",4,34067654,34070800,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS09T0570100-01",0.00198254792306417,0.0674120885726567,-0.926463934673806,"OS09G0570100",null,227.579842056426,217.419549716628,121.049084765756,113.085723027065,"no","OS09G0570100","Os09g0570100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQM0]","Protein kinase, catalytic domain domain containing protein. (Os09t0570100-01);Hypothetical conserved gene. (Os09t0570100-02)",9,22755848,22757503,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0971000-02",0.00199150361550843,0.0675933606544089,0.644628646645043,"OS01G0971000",null,1077.35139283345,987.127722610627,1743.58495427683,1483.89127672091,"no","OS01G0971000","Os01g0971000 protein [Source:UniProtKB/TrEMBL;Acc:Q94DI1]","Conserved hypothetical protein. (Os01t0971000-02)",1,42838976,42839507]
["OS02T0574600-01",0.00199337581662812,0.0675933606544089,-0.715262110568156,"OS02G0574600",null,885.14329118414,798.843294911627,558.479205387677,467.227696216138,"no","OS02G0574600","Os02g0574600 protein [Source:UniProtKB/TrEMBL;Acc:Q69S88]","Similar to H0523F07.2 protein. (Os02t0574600-01)",2,22043899,22046884]
["OS03T0741600-00",1.9996160347703603E-3,0.0677297883528868,-0.713181152599142,"OS03G0741600",null,289.468113117028,313.945730340189,181.481142414936,186.58540740862,"no","OS03G0741600","Os03g0741600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W2T6]","Prenylated rab acceptor PRA1 family protein. (Os03t0741600-00)",3,30436490,30437889,"GO:0006810;GO:0016020;GO:0016021","transport;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0719800-01",2.01374533026679E-3,0.06787584194017801,-1.33439284595444,"OS01G0719800",null,98.9664272998144,109.548805772115,36.6524106983873,46.0361657393932,"no","OS01G0719800","Os01g0719800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JJS7]","Hypothetical protein. (Os01t0719800-01)",1,30010144,30015371]
["OS06T0292301-01",2.0095142344285803E-3,0.06787584194017801,0.439146107146401,"OS06G0292301",null,582.713115571315,591.685709964911,797.949139886157,794.302698489139,"no","OS06G0292301","Os06g0292301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KLY5]","Hypothetical gene. (Os06t0292301-01)",6,10738455,10741214,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0308900-03",2.0095541538850603E-3,0.06787584194017801,-0.6083022029695121,"OS09G0308900",null,1934.44563175083,2298.86779139848,1395.26338787478,1381.65562585265,"no","OS09G0308900","Os09g0308900 protein [Source:UniProtKB/TrEMBL;Acc:Q69L47]","Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein. (Os09t0308900-01);Similar to Lipid phosphate phosphatase 3. (Os09t0308900-02);Similar to lipid phosphate phosphatase 3. (Os09t0308900-03)",9,8151866,8158558,"GO:0016020;GO:0016021;GO:0008195;GO:0016311","membrane;integral component of membrane;phosphatidate phosphatase activity;dephosphorylation","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: a 1,2-diacylglycerol 3-phosphate + H2O = a 1,2-diacyl-sn-glycerol + phosphate. [EC:3.1.3.4, GOC:pr];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS11T0133800-00",0.00201503628697766,0.06787584194017801,1.21623944749687,"OS11G0133800",null,185.287396652431,208.896325195062,384.688037236312,531.159625363261,"no","OS11G0133800","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XYE1]","Similar to zinc finger (DHHC type) family protein. (Os11t0133800-00)",11,1562115,1565026,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0124100-01",2.0126450406600604E-3,0.06787584194017801,-0.47453540080333406,"OS12G0124100",null,885.731655981328,938.749200230336,690.799187256853,622.276987011993,"no","OS12G0124100","Os12g0124100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6H3]","Conserved hypothetical protein. (Os12t0124100-01)",12,1159628,1165291,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS02T0129800-01",0.00203280227918459,0.0681736281379226,1.09652842284613,"OS02G0129800",null,59.1167273267169,58.671825014396,130.744478944094,121.133981773135,"no","OS02G0129800","Os02g0129800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z6Y4]","Conserved hypothetical protein. (Os02t0129800-01)",2,1558563,1559143]
["OS08T0298700-01",0.00203063451077267,0.0681736281379226,-1.51853197862459,"OS08G0298700",null,92.75210666778,114.255659238561,29.271152002409,42.9830257904674,"no","OS08G0298700","Fatty acyl-CoA reductase [Source:UniProtKB/TrEMBL;Acc:B7F9S3]","Similar to male sterility protein 2. (Os08t0298700-01)",8,12115583,12121337,"GO:0043231;GO:0006629;GO:0080019;GO:0055114;GO:0016491;GO:0010345;GO:0035336","intracellular membrane-bounded organelle;lipid metabolic process;fatty-acyl-CoA reductase (alcohol-forming) activity;oxidation-reduction process;oxidoreductase activity;suberin biosynthetic process;long-chain fatty-acyl-CoA metabolic process","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the reaction: a very long chain fatty acyl-CoA + NADPH + H+ = a very long chain primary alcohol + NADP+ + CoA. [PMID:16980563];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262];The chemical reactions and pathways involving long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more. [CHEBI:33184, ISBN:0198506732]"]
["OS09T0106700-01",2.0323347812821304E-3,0.0681736281379226,-0.404855849212129,"OS09G0106700",null,1143.60289759614,1155.93788580994,835.203537135404,901.666654650031,"no","OS09G0106700","Os09g0106700 protein [Source:UniProtKB/TrEMBL;Acc:Q0J3I9]","Similar to Myb proto-oncogene protein (C-myb). (Os09t0106700-01)",9,656788,658373,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS09T0382500-01",0.00203092115503711,0.0681736281379226,-0.50993130358148,"OS09G0382500","SDH7",2448.24791446162,2644.34944670146,1676.26130467129,1900.04511732861,"no","OS09G0382500","Succinate dehydrogenase subunit 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6H611]","Conserved hypothetical protein. (Os09t0382500-01)",9,12977799,12980466,"GO:0005749;GO:0045273;GO:0006099;GO:0005743;GO:0005739;GO:0016020","mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone);respiratory chain complex II;tricarboxylic acid cycle;mitochondrial inner membrane;mitochondrion;membrane","A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. [GOC:mtg_sensu, GOC:vw, ISBN:0198547684];A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. [ISBN:0198547684];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0131800-01",0.0020461509874696,0.0683960667058766,-0.480162802292224,"OS02G0131800","NRAT1",3431.16092061181,3931.90885002808,2616.18804913237,2662.37252263357,"no","OS02G0131800","Metal transporter NRAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZG85]","Trivalent AI influx transporter, Aluminum (Al) tolerance (Os02t0131800-01)",2,1658576,1662644,"GO:0010044;GO:0003723;GO:0005886;GO:0005622;GO:0006810;GO:0005215;GO:0006811;GO:0003676;GO:0016020;GO:0016021;GO:0015083;GO:0015690;GO:1902602","response to aluminum ion;RNA binding;plasma membrane;intracellular;transport;transporter activity;ion transport;nucleic acid binding;membrane;integral component of membrane;aluminum ion transmembrane transporter activity;aluminum cation transport;aluminum ion transmembrane transport","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of aluminum (Al) ions from one side of a membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The directed movement of aluminum (Al) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of aluminium ion across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie]"]
["OS04T0401700-02",0.0020441323145408,0.0683960667058766,-0.65982656121784,"OS04G0401700",null,6809.6025389862,6495.57459755112,3820.79147700469,4600.77873880386,"no","OS04G0401700",null,"Potassium transporter, Potassium mediated growth, Salt tolerance (Os04t0401700-01);Similar to Isoform 2 of Potassium transporter 1. (Os04t0401700-02);Potassium transporter 1 (OsHAK1). Splice isoform 2. (Os04t0401700-03)",4,19886674,19892355,"GO:0016020;GO:0005886;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016021","membrane;plasma membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0431900-00",0.00204596055922398,0.0683960667058766,2.612981356481,"OS08G0431900","MADS23",6.30309390308912,13.631688835338199,60.3488854098813,61.6054582476663,"no","OS08G0431900","MADS-box transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q6VAM4]","Transcription factor MADS23. (Os08t0431900-00)",8,20897215,20906881,"GO:0045944;GO:0000977;GO:0046983;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","positive regulation of transcription from RNA polymerase II promoter;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0157000-01",2.05044162619758E-3,0.0684645820367087,0.588665185537922,"OS12G0157000",null,699.138084461886,772.621977211056,1182.0730972019,1031.24019287041,"no","OS12G0157000","Os12g0157000 protein [Source:UniProtKB/TrEMBL;Acc:C7JAA9]","DNA-binding pseudobarrel domain domain containing protein. (Os12t0157000-01)",12,2835307,2837128]
["OS01T0320400-01",2.0533803912760004E-3,0.0684878577666642,-3.00322527134485,"OS01G0320400",null,35.6738871799154,50.4371829071123,4.87852533373483,5.86132169870009,"no","OS01G0320400","Os01g0320400 protein [Source:UniProtKB/TrEMBL;Acc:Q656Q6]","Conserved hypothetical protein. (Os01t0320400-01)",1,12203402,12204078]
["OS01T0794500-00",0.00205766095212566,0.0685557877964484,-0.31969418094956903,"OS01G0794500",null,3129.05320255168,3110.59351375075,2479.19467263333,2520.25801832709,"no","OS01G0794500","Os01g0794500 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZBT6]","Translation initiation factor SUI1 domain containing protein. (Os01t0794500-00)",1,33651161,33655179,"GO:0006417;GO:0006413;GO:0003743;GO:0008081;GO:0006412;GO:0006281;GO:0005634","regulation of translation;translational initiation;translation initiation factor activity;phosphoric diester hydrolase activity;translation;DNA repair;nucleus","Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0263800-03",0.00206466258600781,0.0687141299866128,-0.43482897302704204,"OS12G0263800",null,5500.9041028543,5276.90944120794,4223.78564488785,3749.44086713817,"no","OS12G0263800","Isoflavone reductase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QUH0]","Similar to cDNA clone:J013002B21, full insert sequence. (Os12t0263800-01);Similar to cDNA, clone: J065219F05, full insert sequence. (Os12t0263800-02);Similar to Isoflavone reductase-like protein 1. (Os12t0263800-03)",12,9299518,9318122,"GO:0004190;GO:0006508;","aspartic-type endopeptidase activity;proteolysis;","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];"]
["OS01T0716200-02",2.0840038752097403E-3,0.0692823573399433,-0.684092043748427,"OS01G0716200",null,641.338257782318,614.356752512135,385.513565872274,396.027753213424,"no","OS01G0716200","Calmodulin-binding family protein-like [Source:UniProtKB/TrEMBL;Acc:Q5JMB8]","IQ calmodulin-binding region domain containing protein. (Os01t0716200-01);Similar to Calmodulin binding protein. (Os01t0716200-02);IQ calmodulin-binding region domain containing protein. (Os01t0716200-03)",1,29801081,29806870]
["OS04T0470700-01",0.00209638735921021,0.0696182897810764,-0.5646532118908311,"OS04G0470700",null,483.174200775251,509.127265724633,317.04120858412,353.871593929296,"no","OS04G0470700","OSJNBa0089K21.6 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQN0]","Amino acid transporter, transmembrane family protein. (Os04t0470700-01)",4,23512858,23522971,"GO:0003333;GO:0015171;GO:0005886;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;plasma membrane;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0607400-01",2.1015070246299603E-3,0.0697125326997769,0.669652880907737,"OS01G0607400",null,483.713277719319,405.276686699314,726.501233714554,687.606385297942,"no","OS01G0607400","Os01g0607400 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZBP7]","Similar to STYLOSA protein. (Os01t0607400-01);Similar to STYLOSA protein. (Os01t0607400-02)",1,23938395,23949885]
["OS08T0120000-04",0.00210540141325559,0.0697659696071417,-0.5553422746365351,"OS08G0120000",null,3027.81720767365,3088.11735122212,1913.53675692246,2248.32976215223,"no","OS08G0120000","Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:Q9S7D3]","Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-01);Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-02);Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-04);Similar to Chimeric SDH2-RPS14 protein. (Os08t0120000-05)",8,1091154,1094690,"GO:0006099;GO:0051537;GO:0051539;GO:0051536;GO:0005743;GO:0005739;GO:0005840;GO:0009055;GO:0046872;GO:0005622;GO:0006412;GO:0003735;GO:0016491;GO:0055114;GO:0051538;GO:0008177;GO:0045273;GO:0009060;GO:0016020;GO:0022904","tricarboxylic acid cycle;2 iron, 2 sulfur cluster binding;4 iron, 4 sulfur cluster binding;iron-sulfur cluster binding;mitochondrial inner membrane;mitochondrion;ribosome;electron carrier activity;metal ion binding;intracellular;translation;structural constituent of ribosome;oxidoreductase activity;oxidation-reduction process;3 iron, 4 sulfur cluster binding;succinate dehydrogenase (ubiquinone) activity;respiratory chain complex II;aerobic respiration;membrane;respiratory electron transport chain","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Catalysis of the reaction: succinate + ubiquinone = fumarate + ubiquinol. [EC:1.3.5.1, RHEA:13716];A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. [ISBN:0198547684];The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:das, GOC:jl, ISBN:0140513590];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport, ISBN:0716720094]"]
["OS01T0498200-01",2.1159597349479304E-3,0.0699430260043073,0.32688961171867503,"OS01G0498200",null,2907.93143212282,2879.03674675905,3734.99899550739,3523.63122786854,"no","OS01G0498200","Os01g0498200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JMJ0]","Conserved hypothetical protein. (Os01t0498200-01)",1,17155310,17157677]
["OS07T0175500-00",0.002119884946486,0.0699430260043073,-1.32289388994441,"OS07G0175500",null,434.202169675542,540.398388290489,163.91845121349,225.660885399954,"no","OS07G0175500","Os07g0175500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X2S1]","Similar to lipid binding protein. (Os07t0175500-00)",7,3976534,3977701]
["OS07T0596600-02",2.12132965532838E-3,0.0699430260043073,-0.444408248647766,"OS07G0596600",null,1912.70661854073,1995.68944381844,1361.38472044263,1510.83959109227,"no","OS07G0596600","Os07g0596600 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIB4]","Similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase. (Os07t0596600-01);Similar to Cdc2MsC protein. (Os07t0596600-02);Similar to predicted protein. (Os07t0596600-03)",7,24292810,24298862,"GO:0006468;GO:0005524;GO:0004672;GO:0004693;GO:0005634;GO:0016310;GO:0016301;GO:0051726","protein phosphorylation;ATP binding;protein kinase activity;cyclin-dependent protein serine/threonine kinase activity;nucleus;phosphorylation;kinase activity;regulation of cell cycle","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. This reaction requires the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK). [GOC:pr, GOC:rn, PMID:7877684, PMID:9841670];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb]"]
["OS08T0484600-01",2.1221911857159203E-3,0.0699430260043073,0.328298455288943,"OS08G0484600","OSK4",2327.73165741658,2258.04259898335,2874.34909472805,2883.23585589834,"no","OS08G0484600","Serine/threonine protein kinase OSK4 [Source:UniProtKB/Swiss-Prot;Acc:Q852Q1]","Serine/threonine protein kinase, Carbohydrate metabolism (Os08t0484600-01)",8,23942304,23947375,"GO:0006468;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672;GO:0016740","protein phosphorylation;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0422600-01",2.1143966786601603E-3,0.0699430260043073,-0.631483021380277,"OS10G0422600",null,372.027680590546,370.558894827764,249.780497087224,229.568433199087,"no","OS10G0422600","Os10g0422600 protein [Source:UniProtKB/TrEMBL;Acc:Q0IXM0]","Protein of unknown function DUF581 family protein. (Os10t0422600-01)",10,14960588,14962880]
["OS11T0569500-01",0.00212986889114506,0.0699524262205468,-0.8731987660451911,"OS11G0569500",null,545.53876425915,700.924020818211,339.459878676913,341.027846670166,"no","OS11G0569500","NA","Similar to Receptor kinase-like protein. (Os11t0569500-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0776600-02",0.0021440764643872,0.0699524262205468,-1.02362667483491,"OS01G0776600",null,662.422065145933,741.361443070965,393.271021430463,297.219629133322,"no","OS01G0776600","Purple acid phosphatase 10 [Source:Projected from Arabidopsis thaliana (AT2G16430) UniProtKB/Swiss-Prot;Acc:Q9SIV9]","Similar to Purple acid phosphatase (EC 3.1.3.2). (Os01t0776600-01);Similar to predicted protein. (Os01t0776600-02);Similar to predicted protein. (Os01t0776600-03)",1,32848286,32852539,"GO:0016787;GO:0003993;GO:0016311;GO:0046872;GO:0016036;GO:0005618;GO:0005829;GO:0009505;GO:0009506","hydrolase activity;acid phosphatase activity;dephosphorylation;metal ion binding;cellular response to phosphate starvation;cell wall;cytosol;plant-type cell wall;plasmodesma","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS02T0131300-02",0.00214239276704505,0.0699524262205468,-1.19206033725321,"OS02G0131300",null,765.720283267446,1042.6725119321,366.03056634352,425.462017488567,"no","OS02G0131300","ATP synthase [Source:UniProtKB/TrEMBL;Acc:Q6ZG90]","Similar to Mitochondrial ATP synthase. (Os02t0131300-01);Non-protein coding transcript. (Os02t0131300-02)",2,1637601,1641825,"GO:0009555;GO:0005507;GO:0008270;GO:0050897;GO:0005730;GO:0005739;GO:0005753;GO:0009507;GO:0016020","pollen development;copper ion binding;zinc ion binding;cobalt ion binding;nucleolus;mitochondrion;mitochondrial proton-transporting ATP synthase complex;chloroplast;membrane","The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with a cobalt (Co) ion. [GOC:ai];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A proton-transporting ATP synthase complex found in the mitochondrial membrane. [GOC:mah, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0401300-01",2.15065538315872E-3,0.0699524262205468,0.5371486321614091,"OS03G0401300","SUS1",20473.8173673784,20458.3611623915,27509.1428537761,31887.6109292513,"no","OS03G0401300","Sucrose synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P31924]","Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2). (Os03t0401300-01);Similar to Sucrose synthase 1. (Os03t0401300-02);Similar to Sucrose synthase metabolism (Fragment). (Os03t0401300-03)",3,16301279,16306089,"GO:0005985;GO:0016157;GO:0010037;GO:0016757;GO:0016740","sucrose metabolic process;sucrose synthase activity;response to carbon dioxide;transferase activity, transferring glycosyl groups;transferase activity","The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose. [EC:2.4.1.13];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus. [GOC:sm];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0595200-01",2.1349018125713403E-3,0.0699524262205468,-0.8071156079088221,"OS05G0595200",null,298.452562802651,289.411368935585,152.372692816069,183.605281271323,"no","OS05G0595200","Os05g0595200 protein [Source:UniProtKB/TrEMBL;Acc:Q0DFE6]","Allergen V5/Tpx-1 related family protein. (Os05t0595200-01);Similar to allergen V5/Tpx-1-related family protein. (Os05t0595200-02)",5,29634921,29638262,"GO:0005576;GO:0016020;GO:0016021","extracellular region;membrane;integral component of membrane","The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0172800-00",0.00215193901895265,0.0699524262205468,-0.526520419396816,"OS06G0172800",null,598.302050703153,547.686745690225,387.237729258542,408.33874500944,"no","OS06G0172800","Probable galactinol--sucrose galactosyltransferase 6 [Source:Projected from Arabidopsis thaliana (AT5G20250) UniProtKB/Swiss-Prot;Acc:Q8RX87]","Similar to alkaline alpha galactosidase 2. (Os06t0172800-00)",6,3675795,3679085,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0103000-02",0.00212647414295047,0.0699524262205468,0.684932985627688,"OS08G0103000",null,319.083783870011,386.712340537579,583.96333185939,550.693788894576,"no","OS08G0103000","Os08g0103000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KP48]","Similar to serine/threonine-protein kinase CTR1. (Os08t0103000-01);Similar to serine/threonine-protein kinase CTR1. (Os08t0103000-02)",8,172099,179389,"GO:0004871;GO:0005829;GO:0035556;GO:0004674;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","signal transducer activity;cytosol;intracellular signal transduction;protein serine/threonine kinase activity;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS08T0299400-01",0.00212937336119464,0.0699524262205468,-2.39028406427038,"OS08G0299400",null,94.7906145066323,68.9651276485006,20.4898064016863,10.7457564476168,"no","OS08G0299400","Os08g0299400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XEB8]","Similar to MGDG synthase type A. (Os08t0299400-01)",8,12266091,12269520,"GO:0031969;GO:0009247;GO:0009536;GO:0009507;GO:0016758;GO:0016757;GO:0016020;GO:0016740;GO:0046509","chloroplast membrane;glycolipid biosynthetic process;plastid;chloroplast;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;membrane;transferase activity;1,2-diacylglycerol 3-beta-galactosyltransferase activity","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 1,2-diacyl-sn-glycerol + UDP-D-galactose = 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + H(+) + UDP. [EC:2.4.1.46, RHEA:14948]"]
["OS09T0358000-00",0.00215224144564395,0.0699524262205468,-1.02700087367497,"OS09G0358000",null,377.461770638881,488.35211153156,196.727989999601,228.152193832284,"no","OS09G0358000","Os09g0358000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLA2]","Similar to OsD305. (Os09t0358000-00)",9,11576100,11576772,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0444600-00",2.1383948526853603E-3,0.0699524262205468,-5.94716476985933,"OS10G0444600",null,36.1733495391204,26.4463746987226,0,1.01493017761025,"no","OS10G0444600","Os10g0444600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUQ9]","Similar to Phosphate transporter (Fragment). (Os10t0444600-00)",10,16027967,16029114,"GO:0022857;GO:0055085;GO:0016021;GO:0016020","transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0541000-01",2.1464035928970902E-3,0.0699524262205468,0.7559149510356881,"OS10G0541000",null,221.522230001199,239.187074822402,349.656433565038,428.344392481279,"no","OS10G0541000","MLO-like protein [Source:UniProtKB/TrEMBL;Acc:Q0IW12]","Similar to Seven transmembrane protein Mlo2. (Os10t0541000-01)",10,21109457,21114148,"GO:0005886;GO:0006952;GO:0009607;GO:0005516;GO:0016021;GO:0016020","plasma membrane;defense response;response to biotic stimulus;calmodulin binding;integral component of membrane;membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0113500-02",2.1330481411026402E-3,0.0699524262205468,0.48469998328960306,"OS12G0113500","CIPK14",749.228907985592,774.913590272708,1095.12768703088,1037.5970522209,"no","OS12G0113500","CBL-interacting protein kinase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q2QYM3]","Similar to CBL-interacting protein kinase 14. (Os12t0113500-01);Serine/threonine protein kinase, Microbe-assosiated molecular pattern (MAMP)-induced defense signaling pathway (Os12t0113500-02)",12,679079,682143,"GO:0005622;GO:0035556;GO:0018107;GO:0018105;GO:0004674;GO:0016310;GO:0016301;GO:0007165;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","intracellular;intracellular signal transduction;peptidyl-threonine phosphorylation;peptidyl-serine phosphorylation;protein serine/threonine kinase activity;phosphorylation;kinase activity;signal transduction;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. [RESID:AA0038];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0615400-01",0.00214632380899091,0.0699524262205468,0.366053662151727,"OS12G0615400",null,1237.37425818335,1301.07345295082,1601.13201453177,1670.47668412953,"no","OS12G0615400","2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q2QM69]","Similar to 37 kDa inner envelope membrane protein, chloroplast precursor (E37). (Os12t0615400-01)",12,26101180,26103543,"GO:0032259;GO:0010189;GO:0008757;GO:0005737;GO:0009536;GO:0009507;GO:0008168;GO:0009706;GO:0009528;GO:0102550;GO:0016020;GO:0016021;GO:0016740","methylation;vitamin E biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;plastid;chloroplast;methyltransferase activity;chloroplast inner membrane;plastid inner membrane;2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity;membrane;integral component of membrane;transferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The inner, i.e. lumen-facing, lipid bilayer of the chloroplast envelope; also faces the chloroplast stroma. [GOC:tb];The inner, i.e. lumen-facing, lipid bilayer of the plastid envelope; also faces the plastid stroma. [GOC:lr];Catalysis of the reaction: S-adenosyl-L-methionine  + 2-methyl-6-geranylgeranyl-1,4-benzoquinol <=> S-adenosyl-L-homocysteine  + 2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol + H+ [EC:2.1.1.295];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0476900-01",2.16022538215018E-3,0.0701373069877284,0.664706881832961,"OS10G0476900",null,251.931185606343,305.744263215112,441.982345249928,442.070518323507,"no","OS10G0476900","Os10g0476900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XW80]","Pentatricopeptide repeat domain containing protein. (Os10t0476900-01)",10,17773251,17776920,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS05T0130600-01",0.00216409010275679,0.0701406195255464,-0.542864532705366,"OS05G0130600",null,701.225910714453,722.58984491414,451.751445903846,525.565178983442,"no","OS05G0130600","Os05g0130600 protein [Source:UniProtKB/TrEMBL;Acc:B7E8B6]","Conserved hypothetical protein. (Os05t0130600-01)",5,1796039,1796862]
["OS06T0698600-01",2.1649189648006804E-3,0.0701406195255464,0.41091169848471903,"OS06G0698600",null,786.864025796991,823.464210728365,1106.44954569106,1034.52327982057,"no","OS06G0698600","Os06g0698600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0E1]","Exo70 exocyst complex subunit family protein. (Os06t0698600-01)",6,29231445,29233822,"GO:0000145;GO:0006887","exocyst;exocytosis","A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. [GOC:cilia, PMID:15292201, PMID:27243008, PMID:9700152];A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. [GOC:mah, ISBN:0716731363, PMID:22323285]"]
["OS01T0611000-01",0.00218352234254269,0.0706012742158169,-0.7186573157800511,"OS01G0611000",null,1149.02934804041,1224.41009474075,652.37564688186,789.875014269896,"no","OS01G0611000","Os01g0611000 protein [Source:UniProtKB/TrEMBL;Acc:Q9AX68]","Protein of unknown function DUF642 domain containing protein. (Os01t0611000-01);Hypothetical conserved gene. (Os01t0611000-02)",1,24181111,24183979]
["OS03T0437600-02",2.1860698287563102E-3,0.0706012742158169,-0.396461655552074,"OS03G0437600","D14L",1549.17320165818,1579.53624488836,1234.94927317507,1141.99162346542,"no","OS03G0437600","Probable esterase D14L [Source:UniProtKB/Swiss-Prot;Acc:Q10J20]","Similar to Hydrolase. (Os03t0437600-01);Similar to Hydrolase. (Os03t0437600-02);Similar to sigma factor sigB regulation protein rsbQ. (Os03t0437600-03)",3,18451136,18456308,"GO:0005737;GO:0016787;GO:0005634;GO:0080167;GO:0036377","cytoplasm;hydrolase activity;nucleus;response to karrikin;arbuscular mycorrhizal association","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290];A form of mutualism between a fungus and the roots of a vascular plant, where hyphae of the fungus penetrate the plant cell wall and invaginate its cell membrane. Once inside, the fungus forms highly branched structures for nutrient exchange with the plant called arbuscules. Aids in the acquisition by the plant of nutrients such as phosphorus from the soil. [GOC:sk, Wikipedia:Arbuscular_mycorrhiza]"]
["OS11T0384789-02",2.1860698287563102E-3,0.0706012742158169,-0.396461655552074,"OS11G0384789","D14L",1549.17320165818,1579.53624488836,1234.94927317507,1141.99162346542,"no","OS11G0384789","Probable esterase D14L [Source:UniProtKB/Swiss-Prot;Acc:Q10J20]","Similar to Hydrolase. (Os11t0384789-01);Similar to Hydrolase. (Os11t0384789-02)",11,12423935,12440714,"GO:0005737;GO:0016787;GO:0005634;GO:0080167;GO:0036377","cytoplasm;hydrolase activity;nucleus;response to karrikin;arbuscular mycorrhizal association","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290];A form of mutualism between a fungus and the roots of a vascular plant, where hyphae of the fungus penetrate the plant cell wall and invaginate its cell membrane. Once inside, the fungus forms highly branched structures for nutrient exchange with the plant called arbuscules. Aids in the acquisition by the plant of nutrients such as phosphorus from the soil. [GOC:sk, Wikipedia:Arbuscular_mycorrhiza]"]
["OS02T0689500-01",2.1904014098091803E-3,0.0706515625732324,-0.647224416985789,"OS02G0689500",null,589.103971833619,545.442915607491,393.771164078839,330.645588778101,"no","OS02G0689500","Os02g0689500 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZGY7]","Similar to transposon protein. (Os02t0689500-01)",2,28278323,28279870]
["OS07T0645400-02",2.1922519415889102E-3,0.0706515625732324,-0.45232301392279706,"OS07G0645400",null,4138.54299620427,4673.86113898037,3138.27238942853,3302.40595786226,"no","OS07G0645400","Os07g0645400 protein [Source:UniProtKB/TrEMBL;Acc:Q8H2T7]","Similar to NADH dehydrogenase. (Os07t0645400-01);Similar to NADH-ubiquinone oxidoreductase 51 kDa subunit. (Os07t0645400-02)",7,26913496,26917496,"GO:0008137;GO:0051539;GO:0010181;GO:0055114;GO:0051287;GO:0016651;GO:0070469;GO:0051536;GO:0005743;GO:0005739;GO:0046872;GO:0016491;GO:0016020;GO:0003954","NADH dehydrogenase (ubiquinone) activity;4 iron, 4 sulfur cluster binding;FMN binding;oxidation-reduction process;NAD binding;oxidoreductase activity, acting on NAD(P)H;respiratory chain;iron-sulfur cluster binding;mitochondrial inner membrane;mitochondrion;metal ion binding;oxidoreductase activity;membrane;NADH dehydrogenase activity","Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol. [EC:1.6.5.3];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. [GOC:ecd, GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor. [EC:1.6.99.3]"]
["OS12T0609050-01",2.19599754429773E-3,0.0706976996558316,-0.7849967051255751,"OS12G0609050",null,296.332580871521,269.82339474366,166.410066530203,162.160412393154,"no","OS12G0609050","Os12g0609050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUC3]","Hypothetical conserved gene. (Os12t0609050-01)",12,25725299,25726044]
["OS03T0795800-02",0.00220331696043255,0.0707098106881672,-0.41986637173283803,"OS03G0795800",null,1662.93226347119,1862.15406735366,1298.9566885324,1336.02368924004,"no","OS03G0795800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6F387]","Uncharacterised protein family UPF0005 domain containing protein. (Os03t0795800-01);Similar to transmembrane BAX inhibitor motif-containing protein 4. (Os03t0795800-02)",3,33103037,33105394,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0592000-01",2.1997792564459303E-3,0.0707098106881672,1.5207042310360799,"OS07G0592000",null,83.018541593448,79.5694276330671,183.480024079768,283.035386675874,"no","OS07G0592000","Os07g0592000 protein [Source:UniProtKB/TrEMBL;Acc:Q0D500]","Gibberellin regulated protein family protein. (Os07t0592000-01)",7,24125333,24127487]
["OS09T0438400-00",2.2026074744831803E-3,0.0707098106881672,-0.45603235259135705,"OS09G0438400",null,1938.9899266307,1771.94815907187,1285.69821987499,1419.53238093879,"no","OS09G0438400","Probable ethanolamine kinase [Source:Projected from Arabidopsis thaliana (AT2G26830) UniProtKB/Swiss-Prot;Acc:O81024]","Similar to Choline/ethanolamine kinase. (Os09t0438400-00)",9,16225081,16229238,"GO:0016310;GO:0016301;GO:0008654;GO:0005886","phosphorylation;kinase activity;phospholipid biosynthetic process;plasma membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS06T0695300-01",0.00221822791384621,0.0709647112291408,-3.9871924361140803,"OS06G0695300",null,225.822694788122,186.267269499254,5.68248189431495,20.3028050214381,"no","OS06G0695300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5Z8H7]","Haem peroxidase, plant/fungal/bacterial family protein. (Os06t0695300-01)",6,29027003,29028476,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS08T0424500-02",2.21425043576368E-3,0.0709647112291408,0.502674659014208,"OS08G0424500","BADH2",5414.72378789902,5663.43838778413,7300.72515830795,8395.23432648178,"no","OS08G0424500","Betaine aldehyde dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84LK3]","Betaine aldehyde dehydrogenase, Rice fragrance (Os08t0424500-01);Similar to Betaine aldehyde dehydrogenase. (Os08t0424500-02)",8,20379823,20385975,"GO:0055114;GO:0016491;GO:0008152;GO:0005777;GO:0071454;GO:0019285;GO:0008802;GO:0005737","oxidation-reduction process;oxidoreductase activity;metabolic process;peroxisome;cellular response to anoxia;glycine betaine biosynthetic process from choline;betaine-aldehyde dehydrogenase activity;cytoplasm","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%. [GOC:mah];The chemical reactions and pathways resulting in the formation of betaine (N-trimethylglycine) from the oxidation of choline. [GOC:jl];Catalysis of the reaction: betaine aldehyde + NAD+ + H2O = betaine + NADH + H+. [EC:1.2.1.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0255000-01",2.2162320308069202E-3,0.0709647112291408,0.8064326139838871,"OS09G0255000","CIN7",182.446451577282,160.191674372854,274.90704347403,324.326467328072,"no","OS09G0255000","Beta-fructofuranosidase, insoluble isoenzyme 7 [Source:UniProtKB/Swiss-Prot;Acc:Q0J360]","Similar to Cell wall invertase (EC 3.2.1.26). (Os09t0255000-01)",9,4165397,4170918,"GO:0004575;GO:0004564;GO:0008152;GO:0016798;GO:0048046;GO:0004553;GO:0005975;GO:0016787;GO:0005618;GO:0005576","sucrose alpha-glucosidase activity;beta-fructofuranosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;apoplast;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;cell wall;extracellular region","Catalysis of the reaction: sucrose + H2O = alpha-D-glucose + beta-D-fructose. [EC:3.2.1.48, MetaCyc:RXN-1461];Catalysis of the reaction: a fructofuranosylated fructofuranosyl acceptor + H2O = a non fructofuranosylated fructofuranosyl acceptor + a beta-D-fructofuranoside. [EC:3.2.1.26, MetaCyc:RXN-9985];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0835900-01",2.2327705936916998E-3,0.0710579241442383,0.764424976684258,"OS03G0835900",null,5920.84601794653,5985.5554817318,8994.04930527354,11231.2692616592,"no","OS03G0835900","Ferredoxin [Source:UniProtKB/TrEMBL;Acc:Q75LK5]","Similar to Ferredoxin III, chloroplast precursor (Fd III). (Os03t0835900-01)",3,35122475,35124341,"GO:0022900;GO:0051537;GO:0051536;GO:0009536;GO:0009507;GO:0009055;GO:0055114;GO:0046872","electron transport chain;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;plastid;chloroplast;electron carrier activity;oxidation-reduction process;metal ion binding","A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS06T0113900-06",2.22443874213557E-3,0.0710579241442383,-0.467059769337385,"OS06G0113900",null,6306.29412437293,7127.06456593866,4710.70097226675,5007.49406651118,"no","OS06G0113900","Os06g0113900 protein [Source:UniProtKB/TrEMBL;Acc:Q9LWT7]","Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-01);Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-02);Major facilitator superfamily, general substrate transporter domain containing protein. (Os06t0113900-03);Similar to cDNA clone:J033107D23, full insert sequence. (Os06t0113900-04);Similar to cDNA clone:J033107D23, full insert sequence. (Os06t0113900-05);Hypothetical conserved gene. (Os06t0113900-06)",6,796330,804194,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0274700-01",0.00223105010923442,0.0710579241442383,0.7830216626644171,"OS07G0274700",null,1552.37345800178,1508.09338294903,2336.93179362136,2929.30867559209,"no","OS07G0274700","Os07g0274700 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU35]","HvB12D protein (B12Dg1 protein). (Os07t0274700-01)",7,10231836,10232644,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0356500-01",0.00222681738883033,0.0710579241442383,-0.508881968873039,"OS08G0356500",null,685.771148006493,683.475294904543,451.603947073917,510.657053139381,"no","OS08G0356500","Os08g0356500 protein [Source:UniProtKB/TrEMBL;Acc:Q6YZN3]","Protein of unknown function DUF247, plant family protein. (Os08t0356500-01)",8,16307677,16310159,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0558900-02",2.2308680478727904E-3,0.0710579241442383,-0.348035752695801,"OS08G0558900",null,2199.51220797648,2263.99285269975,1706.29133839228,1800.47501044699,"no","OS08G0558900","Os08g0558900 protein [Source:UniProtKB/TrEMBL;Acc:Q6YZI5]","Similar to F1F0-ATPase inhibitor protein. (Os08t0558900-01);Similar to F1F0-ATPase inhibitor protein. (Os08t0558900-02)",8,27966196,27967934,"GO:0005739;GO:0042030;GO:0032780","mitochondrion;ATPase inhibitor activity;negative regulation of ATPase activity","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of ATP to ADP and orthophosphate. [GOC:jl];Any process that stops or reduces the rate of ATP hydrolysis by an ATPase. [GOC:mah]"]
["OS01T0916000-01",2.24293563530693E-3,0.071080390880214,-0.48350283567191904,"OS01G0916000",null,2411.55477336228,2170.85752553265,1560.1524017284,1717.36725771913,"no","OS01G0916000","Os01g0916000 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZX2]","Conserved hypothetical protein. (Os01t0916000-01)",1,39922260,39923794]
["OS03T0207300-02",2.2391037286282204E-3,0.071080390880214,0.8195261539841611,"OS03G0207300",null,393.571610527235,502.653059963365,791.300470314029,790.380353141785,"no","OS03G0207300","Casein kinase II, alpha chain, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10Q71]","Similar to Casein kinase II alpha subunit. (Os03t0207300-01);Similar to predicted protein. (Os03t0207300-02)",3,5616064,5620692,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301;GO:0004674;GO:0000166","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity;protein serine/threonine kinase activity;nucleotide binding","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS04T0635500-01",0.00224428155472556,0.071080390880214,1.39816702355743,"OS04G0635500",null,41.163670953021,40.038416679966,88.603218762267,125.418283307031,"no","OS04G0635500","OSJNBa0043L09.24 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQS3]","Similar to Wound induced protein (Fragment). (Os04t0635500-01)",4,32333452,32333991]
["OS06T0639100-05",0.0022439304833641,0.071080390880214,"Inf","OS06G0639100",null,0,0,118.598025304751,97.8715512959388,"no","OS06G0639100","Probable E3 ubiquitin ligase SUD1 [Source:Projected from Arabidopsis thaliana (AT4G34100) UniProtKB/Swiss-Prot;Acc:F4JKK0]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0639100-01);Similar to protein binding / zinc ion binding. (Os06t0639100-02);Similar to protein binding / zinc ion binding. (Os06t0639100-03);Similar to predicted protein. (Os06t0639100-04);Similar to predicted protein. (Os06t0639100-05)",6,25968017,25974644,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0016020;GO:0016021;GO:0030176;GO:1904264;GO:0030433;GO:0046872;GO:0008270;GO:0008299;GO:0009414;GO:0010025;GO:0010143;GO:0010345;GO:0042335;GO:1900490","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;membrane;integral component of membrane;integral component of endoplasmic reticulum membrane;ubiquitin protein ligase activity involved in ERAD pathway;ubiquitin-dependent ERAD pathway;metal ion binding;zinc ion binding;isoprenoid biosynthetic process;response to water deprivation;wax biosynthetic process;cutin biosynthetic process;suberin biosynthetic process;cuticle development;positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];Any ubiquitin protein ligase activity that is involved in the ERAD pathway (the targeting of endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome). [GO_REF:0000061, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:23990462];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:0943088399];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262];The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:0192800825];Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]"]
["OS11T0603200-01",0.00224510923014554,0.071080390880214,0.73781259357621,"OS11G0603200",null,309.578857432603,301.30281971912,563.494149210919,455.239897763616,"no","OS11G0603200","ABC transporter family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R1J1]","Similar to ABCF-type protein. (Os11t0603200-01);Similar to ABCF-type protein. (Os11t0603200-02)",11,23230112,23234075,"GO:0016887;GO:0005524;GO:0000166;","ATPase activity;ATP binding;nucleotide binding;","Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];"]
["OS05T0430700-01",2.25126505761282E-3,0.071201501076798,-0.843215146141923,"OS05G0430700",null,705.86947901935,729.373163795842,350.278118962161,449.726100367328,"no","OS05G0430700","Probable magnesium transporter [Source:UniProtKB/TrEMBL;Acc:Q6I5V6]","Protein of unknown function DUF803 family protein. (Os05t0430700-01)",5,21135258,21138615,"GO:0016020;GO:0005886;GO:0005769;GO:0005768;GO:1903830;GO:0015693;GO:0015095;GO:0006810;GO:0006811;GO:0016021","membrane;plasma membrane;early endosome;endosome;magnesium ion transmembrane transport;magnesium ion transport;magnesium ion transmembrane transporter activity;transport;ion transport;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways. [GOC:mah, NIF_Subcellular:nlx_subcell_20090701, PMID:19696797];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];The directed movement of magnesium ion across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:11254124];The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. [GOC:dgf];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0205800-01",2.26842065269663E-3,0.0716698942928515,0.977541467353029,"OS08G0205800",null,87.6558370706493,111.167668448329,187.335372815418,204.16937250472,"no","OS08G0205800","Os08g0205800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCY1]","Hypothetical conserved gene. (Os08t0205800-01)",8,6168352,6169288]
["OS02T0635200-01",2.2731972901809503E-3,0.0717466152991821,0.452648868887952,"OS02G0635200","NIT4",526.954276343322,507.459819861355,691.774892323599,723.873229789462,"no","OS02G0635200","Bifunctional nitrilase/nitrile hydratase NIT4 [Source:UniProtKB/Swiss-Prot;Acc:Q6H849]","Similar to Nitrilase 2 (EC 3.5.5.1). (Os02t0635200-01)",2,25465734,25469526,"GO:0016810;GO:0006807;GO:0016787;GO:0000257;GO:0047427","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;nitrogen compound metabolic process;hydrolase activity;nitrilase activity;cyanoalanine nitrilase activity","Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. [GOC:jl];The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: a nitrile + H2O = a carboxylate + NH3. Acts on a wide range of aromatic nitriles including (indole-3-yl)-acetonitrile and some aliphatic nitriles, and on the corresponding acid amides. [EC:3.5.5.1, GOC:kd];Catalysis of the reaction: 3-cyano-L-alanine + 2 H(2)O + H(+) = L-aspartate + NH(4)(+). [EC:3.5.5.4, RHEA:25310]"]
["OS06T0239500-01",0.00227606339126683,0.0717629398658247,0.618847219259767,"OS06G0239500",null,338.392301249483,287.183143491517,489.803943506977,470.859509795574,"no","OS06G0239500","Os06g0239500 protein [Source:UniProtKB/TrEMBL;Acc:Q67VA7]","TGF-beta receptor, type I/II extracellular region family protein. (Os06t0239500-01)",6,7247884,7250998,"GO:0006810;GO:0005215;GO:0016020;GO:0016021","transport;transporter activity;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0105300-01",2.2901982854292902E-3,0.0718385529083716,1.6439850035819799,"OS01G0105300",null,28.0042372588467,23.1603445378539,67.1296334817608,92.773961296204,"no","OS01G0105300","Os01g0105300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UWX1]","Similar to HAT family dimerisation domain containing protein, expressed. (Os01t0105300-01)",1,284762,291892]
["OS01T0150000-02",0.00229235084038945,0.0718385529083716,-0.572894089632578,"OS01G0150000",null,3718.7590880227,4388.91815204094,2684.84192616975,2765.68069145332,"no","OS01G0150000","Very-long-chain enoyl-CoA reductase [Source:Projected from Arabidopsis thaliana (AT3G55360) UniProtKB/Swiss-Prot;Acc:Q9M2U2]","Similar to Synaptic glycoprotein SC2. (Os01t0150000-01);3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein. (Os01t0150000-02)",1,2707624,2711422,"GO:0016491;GO:0016627;GO:0055114;GO:0006629;GO:0005737;GO:0016021;GO:0016020;GO:0042761;GO:0009922;GO:0006665;GO:0010025;GO:0010091;GO:0042335;GO:1905499;GO:0005783;GO:0005789;GO:0005886","oxidoreductase activity;oxidoreductase activity, acting on the CH-CH group of donors;oxidation-reduction process;lipid metabolic process;cytoplasm;integral component of membrane;membrane;very long-chain fatty acid biosynthetic process;fatty acid elongase activity;sphingolipid metabolic process;wax biosynthetic process;trichome branching;cuticle development;trichome papilla formation;endoplasmic reticulum;endoplasmic reticulum membrane;plasma membrane","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The chemical reactions and pathways resulting in the formation of a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:go_curators];Catalysis of the reaction: fatty acid (C-16 or longer) + 2-C = fatty acid (C-16 or longer + 2-C). [GOC:tb];The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:0943088399];Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators];The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:0192800825];The aggregation, arrangement and bonding together of a set of components to form a trichome papilla. [GO_REF:0000079, GOC:tb, GOC:TermGenie, PMID:24014871];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS01T0818600-02",2.2917971329498503E-3,0.0718385529083716,-0.466157977082902,"OS01G0818600",null,1440.73172962086,1298.16730602747,1032.33510003418,950.326015975504,"no","OS01G0818600","Os01g0818600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9U1]","Similar to Leucine-rich repeat transmembrane protein kinase. (Os01t0818600-01);Similar to cDNA clone:J013021N20, full insert sequence. (Os01t0818600-02)",1,34868412,34872484,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301;GO:0004674;GO:0000166;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity;protein serine/threonine kinase activity;nucleotide binding;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0106200-03",2.28741455775208E-3,0.0718385529083716,-0.505290852004186,"OS07G0106200",null,5143.65703973503,5119.60020543292,3343.28165304911,3887.37120239747,"no","OS07G0106200","Os07g0106200 protein [Source:UniProtKB/TrEMBL;Acc:Q7EZD7]","Similar to Hexose transporter. (Os07t0106200-02);Similar to Monosaccharide transporter 3. (Os07t0106200-03)",7,349201,353686,"GO:0022857;GO:0055085;GO:0016021;GO:0016020;GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0008643;GO:0022891;GO:0006810;GO:0005215;GO:0015293","transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane;glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;carbohydrate transport;substrate-specific transmembrane transporter activity;transport;transporter activity;symporter activity","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820]"]
["OS07T0658300-03",2.2925696872761903E-3,0.0718385529083716,-0.442891880758478,"OS07G0658300",null,975.374534553217,1005.62763934681,692.008646012763,765.332447647174,"no","OS07G0658300","Os07g0658300 protein [Source:UniProtKB/TrEMBL;Acc:Q0D3Z0]","Rho GTPase-activating protein, Target of the E3 ligase SPL11, Negative regulation of programmed cell death and innate immunity (Os07t0658300-01);Splicing isoform of SPIN6 (Os07t0658300-02);Splicing isoform of SPIN6 (Os07t0658300-03)",7,27713321,27722659,"GO:0007165;GO:0043087;GO:0005737;GO:0005096;GO:0043547","signal transduction;regulation of GTPase activity;cytoplasm;GTPase activator activity;positive regulation of GTPase activity","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Any process that modulates the rate of GTP hydrolysis by a GTPase. [GOC:jl, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah]"]
["OS08T0175200-02",0.00228927748323938,0.0718385529083716,0.316920057210265,"OS08G0175200",null,2114.22244869441,2082.51270701425,2612.62955915858,2615.11075934719,"no","OS08G0175200","Os08g0175200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z4T7]","Protein of unknown function DUF292, eukaryotic domain containing protein. (Os08t0175200-01);Hypothetical conserved gene. (Os08t0175200-02)",8,4385769,4388881,"GO:0015031","protein transport","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS01T0823500-01",2.3022844092913503E-3,0.0719286993962194,2.06301563513649,"OS01G0823500",null,24.4620940662277,13.3812934243359,71.1889990493717,86.9429385307181,"no","OS01G0823500","Os01g0823500 protein [Source:UniProtKB/TrEMBL;Acc:Q5JN79]","Protein of unknown function DUF623, plant domain containing protein. (Os01t0823500-01)",1,35167601,35169129,"GO:0003677","DNA binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0827300-01",0.00229892819232181,0.0719286993962194,-1.7895037183483,"OS01G0827300","LAC3",1033.17519131664,1248.32491327339,247.82908695373,412.143955378716,"no","OS01G0827300","Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q941X2]","Putative laccase precursor, Abiotic stress response (Os01t0827300-01)",1,35402795,35405298,"GO:0016722;GO:0048046;GO:0046274;GO:0052716;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0005576","oxidoreductase activity, oxidizing metal ions;apoplast;lignin catabolic process;hydroquinone:oxygen oxidoreductase activity;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;extracellular region","Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. [GOC:mah];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. [GOC:ai];Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. [EC:1.10.3.2];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0773200-01",0.00230486373097993,0.0719286993962194,-0.604401757025508,"OS02G0773200",null,468.643999419723,479.582812338626,287.768739096473,335.921823900247,"no","OS02G0773200","Os02g0773200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZHE6]","UspA domain containing protein. (Os02t0773200-01)",2,32643551,32644836,"GO:0006950;GO:0043621;GO:0005737;GO:0005886;GO:0016020","response to stress;protein self-association;cytoplasm;plasma membrane;membrane","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];Interacting selectively and non-covalently with a domain within the same polypeptide. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0564000-01",2.3038766889167997E-3,0.0719286993962194,-2.42174470433421,"OS08G0564000","PHT1-6",290.102739194541,223.72995763096,31.8879703257514,64.0087906277105,"no","OS08G0564000","Inorganic phosphate transporter 1-6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H6H0]","Pi transporter, Pi homeostasis (Os08t0564000-01)",8,28244202,28246028,"GO:0022891;GO:0005887;GO:0005315;GO:0022857;GO:0003700;GO:0003677;GO:0006810;GO:0055085;GO:0005634;GO:0006355;GO:0006351;GO:0016021;GO:0015293;GO:0016020;GO:0006817","substrate-specific transmembrane transporter activity;integral component of plasma membrane;inorganic phosphate transmembrane transporter activity;transmembrane transporter activity;transcription factor activity, sequence-specific DNA binding;DNA binding;transport;transmembrane transport;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;integral component of membrane;symporter activity;membrane;phosphate ion transport","Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]"]
["OS08T0120000-05",2.3095570817525403E-3,0.0719903108496385,-0.46404316261704104,"OS08G0120000",null,678.223648039526,656.369158777624,489.386588145637,478.128771965717,"no","OS08G0120000","Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:Q9S7D3]","Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-01);Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-02);Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-04);Similar to Chimeric SDH2-RPS14 protein. (Os08t0120000-05)",8,1091154,1094690,"GO:0006099;GO:0051537;GO:0051539;GO:0051536;GO:0005743;GO:0005739;GO:0005840;GO:0009055;GO:0046872;GO:0005622;GO:0006412;GO:0003735;GO:0016491;GO:0055114;GO:0051538;GO:0008177;GO:0045273;GO:0009060;GO:0016020;GO:0022904","tricarboxylic acid cycle;2 iron, 2 sulfur cluster binding;4 iron, 4 sulfur cluster binding;iron-sulfur cluster binding;mitochondrial inner membrane;mitochondrion;ribosome;electron carrier activity;metal ion binding;intracellular;translation;structural constituent of ribosome;oxidoreductase activity;oxidation-reduction process;3 iron, 4 sulfur cluster binding;succinate dehydrogenase (ubiquinone) activity;respiratory chain complex II;aerobic respiration;membrane;respiratory electron transport chain","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Catalysis of the reaction: succinate + ubiquinone = fumarate + ubiquinol. [EC:1.3.5.1, RHEA:13716];A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain. [ISBN:0198547684];The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:das, GOC:jl, ISBN:0140513590];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport, ISBN:0716720094]"]
["OS08T0558200-01",2.3115506331335203E-3,0.0719903108496385,0.7598459204858281,"OS08G0558200",null,146.772564397366,136.900925033591,232.217805885778,248.129285244971,"no","OS08G0558200","Os08g0558200 protein [Source:UniProtKB/TrEMBL;Acc:Q6YZJ0]","Thioredoxin fold domain containing protein. (Os08t0558200-01)",8,27938261,27941159,"GO:0005737;GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055;GO:0005525;GO:0003924;GO:0004364;GO:0006749","cytoplasm;cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity;GTP binding;GTPase activity;glutathione transferase activity;glutathione metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732]"]
["OS02T0676000-02",2.3159812893622602E-3,0.0720548476095679,-0.365466112810287,"OS02G0676000",null,2386.25952398455,2503.9720778149,1972.38392395025,1823.50211525079,"no","OS02G0676000","Membrane bound O-acyl transferase-like [Source:UniProtKB/TrEMBL;Acc:Q6EP89]","Membrane bound O-acyl transferase, MBOAT family protein. (Os02t0676000-01);Similar to predicted protein. (Os02t0676000-02)",2,27559285,27567041,"GO:0016020;GO:0016021;GO:0016740","membrane;integral component of membrane;transferase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0179800-01",0.00232679268141729,0.0722440752059562,-0.487650832510906,"OS01G0179800",null,610.232056841737,654.132290406663,440.997084982975,460.729166066268,"no","OS01G0179800","Os01g0179800 protein [Source:UniProtKB/TrEMBL;Acc:Q5VR48]","TMS membrane protein/tumour differentially expressed protein family protein. (Os01t0179800-01)",1,4167514,4173240,"GO:0015825;GO:0015194;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","L-serine transport;L-serine transmembrane transporter activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The directed movement of L-serine, the L-enantiomer of 2-amino-3-hydroxypropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, GOC:jsg, GOC:mah];Enables the transfer of L-serine from one side of a membrane to the other. L-serine is the L-enantiomer of 2-amino-3-hydroxypropanoic acid. [GOC:ai, GOC:jsg, GOC:mah, GOC:mtg_transport, ISBN:0815340729];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0110800-01",0.00232633611296883,0.0722440752059562,-1.03708313356902,"OS05G0110800",null,238.765226968319,230.526729833211,123.072758713397,105.618718453047,"no","OS05G0110800","Os05g0110800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WH08]","Conserved hypothetical protein. (Os05t0110800-01);Similar to predicted protein. (Os05t0110800-02)",5,575028,576861,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0258400-02",2.3358329082532703E-3,0.0724511340233034,3.97682797383448,"OS07G0258400","NRAMP1",59.0762629766394,143.537084238948,1472.81042618353,1717.35026181153,"no","OS07G0258400","Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q0D7E4]","OsNramp1 (Integral membrane protein). (Os07t0258400-01);Similar to Metal transporter. (Os07t0258400-02);Integral membrane protein, Metal ion transport (Os07t0258400-03)",7,8966025,8970856,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0055072;GO:0034755;GO:0005381;GO:0006811","transport;transporter activity;membrane;integral component of membrane;iron ion homeostasis;iron ion transmembrane transport;iron ion transmembrane transporter activity;ion transport","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];A process in which an iron ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS01T0918100-01",2.3411515410009702E-3,0.0725424562684196,-0.33943992069536805,"OS01G0918100",null,1801.99898979264,1875.43191065141,1425.87555088589,1480.57489760651,"no","OS01G0918100","Os01g0918100 protein [Source:UniProtKB/TrEMBL;Acc:Q5JLD2]","Conserved hypothetical protein. (Os01t0918100-01)",1,40056074,40059404]
["OS08T0530000-01",0.0023454081963434,0.07260072058225289,0.328819671249232,"OS08G0530000",null,2917.83034025614,2739.29332639558,3608.5322621492,3496.73235735443,"no","OS08G0530000","Uridine kinase [Source:UniProtKB/TrEMBL;Acc:Q6ZIA3]","Similar to Uridine kinase-like protein. (Os08t0530000-01)",8,26389739,26395118,"GO:0044206;GO:0004849;GO:0043097;GO:0006206;GO:0005829;GO:0016301;GO:0016310;GO:0009116;GO:0016757;GO:0005524;GO:0000166;GO:0008152;GO:0016740;GO:0044211","UMP salvage;uridine kinase activity;pyrimidine nucleoside salvage;pyrimidine nucleobase metabolic process;cytosol;kinase activity;phosphorylation;nucleoside metabolic process;transferase activity, transferring glycosyl groups;ATP binding;nucleotide binding;metabolic process;transferase activity;CTP salvage","Any process which produces UMP, uridine monophosphate, from derivatives of it (e.g. cytidine, uridine, cytosine) without de novo synthesis. [GOC:ecd, PMID:15096496];Catalysis of the reaction: ATP + uridine = ADP + UMP. [EC:2.7.1.48];Any process that generates a pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose, from derivatives of it, without de novo synthesis. [GOC:jl];The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [CHEBI:26432, GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Any process which produces cytidine 5'-triphosphate (CTP) from derivatives of it, without de novo synthesis. [GOC:ecd, GOC:jl, PMID:10501935]"]
["OS07T0241500-01",2.3537991846969103E-3,0.07278671324985819,2.02040852762969,"OS07G0241500",null,11.2117931136877,12.6125592512212,46.8338432038544,49.8212344389508,"no","OS07G0241500","Os07g0241500 protein [Source:UniProtKB/TrEMBL;Acc:Q7XI35]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os07t0241500-01)",7,7900573,7902415,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0644800-01",0.00235750984023749,0.0728277458432112,0.508465014689313,"OS04G0644800",null,489.214726658614,495.863328481627,656.406394283822,744.9024577545,"no","OS04G0644800","Os04g0644800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFJ7]","Similar to Chloride channel-like protein Osclc. (Os04t0644800-01)",4,32824363,32825367]
["OS05T0473000-01",0.00236486399522791,0.0729811361436395,-0.676041561571849,"OS05G0473000",null,375.085442348825,352.030950086376,209.776589350598,245.31116270211,"no","OS05G0473000","Os05g0473000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKY4]","Streptomyces cyclase/dehydrase family protein. (Os05t0473000-01)",5,23239204,23240669]
["OS08T0162100-01",2.3681957250589604E-3,0.0730046882409996,0.41164602093999103,"OS08G0162100","TPR2",935.603786476037,879.67722541118,1240.22949418587,1174.46206943685,"no","OS08G0162100","Protein TPR2 [Source:UniProtKB/Swiss-Prot;Acc:Q0J7U6]","Transcriptional co-repressor, Regulation of meristem fate (Os08t0162100-01);Similar to predicted protein. (Os08t0162100-02)",8,3667092,3675772,"GO:0005634;GO:0006355;GO:0006351","nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0157066-00",0.0023704062167803,0.0730046882409996,1.22143164631265,"OS12G0157066",null,132.257587868738,91.3259454316418,266.189841777098,255.157757757645,"no","OS12G0157066","Os12g0157066 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTL6]","Hypothetical protein. (Os12t0157066-00)",12,2835557,2837551]
["OS06T0354700-01",2.3763414937713703E-3,0.0731137817902346,0.48175785036094604,"OS06G0354700",null,503.335343616671,547.623789662389,732.533303682629,735.072404816364,"no","OS06G0354700","Pheophytinase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G13800) UniProtKB/Swiss-Prot;Acc:Q9FFZ1]","Alpha/beta hydrolase-fold family protein, Chlorophyll degradation during senescence (Os06t0354700-01);Similar to Hydrolase, alpha/beta fold family protein. (Os06t0354700-02);Similar to Hydrolase, alpha/beta fold family protein. (Os06t0354700-03)",6,14527016,14531805,"GO:0016787;GO:0009507;GO:0015996;GO:0080124","hydrolase activity;chloroplast;chlorophyll catabolic process;pheophytinase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl];Catalysis of the reaction: pheophytin + H2O = phytol + pheophorbide. [PMID:19304936]"]
["OS01T0358100-01",2.3837229828710003E-3,0.0732189052746796,-1.1361585894689,"OS01G0358100",null,1850.14083008982,2035.90809774975,738.64119454532,1029.39214052286,"no","OS01G0358100","Os01g0358100 protein [Source:UniProtKB/TrEMBL;Acc:Q94DK4]","Rapid ALkalinization Factor family protein. (Os01t0358100-01)",1,14486394,14487138,"GO:0009506;GO:0004871;GO:0005622;GO:0019722","plasmodesma;signal transducer activity;intracellular;calcium-mediated signaling","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. [GOC:signaling]"]
["OS11T0601700-01",2.3845512813663997E-3,0.0732189052746796,-0.9059194990719721,"OS11G0601700",null,404.643806012183,431.289380368981,252.707612287464,193.423616057103,"no","OS11G0601700","Helix-loop-helix DNA-binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R1K8]","Helix-loop-helix DNA-binding domain containing protein. (Os11t0601700-01)",11,23132812,23137537,"GO:0005634;GO:0046983;GO:0003677","nucleus;protein dimerization activity;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS12T0230600-01",0.00238980346354871,0.0733065014240363,-0.5246564729131631,"OS12G0230600",null,716.985956508889,766.225348003323,479.790578521438,551.226100624086,"no","OS12G0230600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QVG6]","Protein of unknown function DUF1685 family protein. (Os12t0230600-01)",12,7130738,7132096]
["OS01T0756200-01",2.3988401853258503E-3,0.0735098950271569,-0.5466791765565691,"OS01G0756200","BZIP06",585.051749750613,655.683377792461,405.893307766738,443.50667520164,"no","OS01G0756200","Basic leucine zipper 6 [Source:UniProtKB/Swiss-Prot;Acc:Q5JMK6]","Similar to VirE2-interacting protein VIP1. (Os01t0756200-01)",1,31728015,31730360,"GO:0045893;GO:0005634;GO:0000977;GO:0003700;GO:0003677;GO:0006355;GO:0006351","positive regulation of transcription, DNA-templated;nucleus;RNA polymerase II regulatory region sequence-specific DNA binding;transcription factor activity, sequence-specific DNA binding;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0555300-02",0.00240752793257048,0.07362842181771109,-1.49390639778466,"OS04G0555300",null,1760.21202138815,1455.81203989038,454.400238345543,687.448701206528,"no","OS04G0555300","Os04g0555300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDN9]","Similar to glycerol 3-phosphate permease. (Os04t0555300-01);Similar to Glycerol 3-phosphate permease. (Os04t0555300-02)",4,27783578,27787138,"GO:0055085;GO:0016021;GO:0016020;GO:0006810;GO:0005215","transmembrane transport;integral component of membrane;membrane;transport;transporter activity","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS06T0294200-01",0.00240663399002235,0.07362842181771109,-0.85202728816233,"OS06G0294200",null,245.566828236821,207.901754845149,124.228874047711,126.995303471835,"no","OS06G0294200","Embryogenesis transmembrane protein-like [Source:UniProtKB/TrEMBL;Acc:Q5ZA82]","Conserved hypothetical protein. (Os06t0294200-01)",6,10813016,10816111,"GO:0007165;GO:0016020;GO:0016021","signal transduction;membrane;integral component of membrane","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0278500-01",2.41146062105355E-3,0.0736749448944281,-0.550535367604655,"OS05G0278500","AT5",5132.92258860839,5042.68896044782,3186.58680105173,3760.98206385211,"no","OS05G0278500","Acyl transferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0DJH7]","Transferase family protein. (Os05t0278500-01)",5,11609491,11615022,"GO:0016410;GO:0016746;GO:0016747;GO:0016740","N-acyltransferase activity;transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule. [GOC:ai];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0125300-02",2.4266012470364603E-3,0.073989542215028,-0.59981803228063,"OS02G0125300","BI1",4683.96471830443,4924.06009034156,2893.53781039652,3446.19414313283,"no","OS02G0125300","Bax inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MBD8]","Bax inhibitor-1 (BI-1) (OsBI-1). (Os02t0125300-01);Bax inhibitor-1 (BI-1) (OsBI-1). (Os02t0125300-02)",2,1326923,1330305,"GO:0016021;GO:0016020;GO:0043066","integral component of membrane;membrane;negative regulation of apoptotic process","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. [GOC:jl, GOC:mtg_apoptosis]"]
["OS04T0399300-01",2.4246420536423903E-3,0.073989542215028,0.6537472744939431,"OS04G0399300",null,250.736464178834,220.276676369838,360.035169629631,380.985910415506,"no","OS04G0399300","Os04g0399300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDJ5]","Similar to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-) (AtNUDT13). (Os04t0399300-01)",4,19735871,19739665,"GO:0016818;GO:0005634;GO:0005737;GO:0016787","hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;nucleus;cytoplasm;hydrolase activity","Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS08T0468100-03",2.4337031444276102E-3,0.074132102162066,0.342857756703267,"OS08G0468100","NIA1",2980.98548777705,3249.37463342901,3982.63039952744,3919.1256765972,"no","OS08G0468100","Nitrate reductase [NADH] 1 [Source:UniProtKB/Swiss-Prot;Acc:P16081]","Similar to Nitrate reductase. (Os08t0468100-01);Similar to Nitrate reductase. (Os08t0468100-02);Similar to Nitrate reductase. (Os08t0468100-03)",8,23033230,23038585,"GO:0042128;GO:0030151;GO:0055114;GO:0046872;GO:0016491;GO:0020037;GO:0004128;GO:0006809;GO:0050464;GO:0043546;GO:0009703;GO:0005829","nitrate assimilation;molybdenum ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;heme binding;cytochrome-b5 reductase activity, acting on NAD(P)H;nitric oxide biosynthetic process;nitrate reductase (NADPH) activity;molybdopterin cofactor binding;nitrate reductase (NADH) activity;cytosol","The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899];Interacting selectively and non-covalently with molybdenum (Mo) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5). [EC:1.6.2.2, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. [GOC:ai];Catalysis of the reaction: nitrite + NADP+ + H2O = nitrate + NADPH + H+. [EC:1.7.1.3, MetaCyc:NITRATE-REDUCTASE-NADPH-RXN];Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [ISSN:09498257];Catalysis of the reaction: nitrite + NAD+ + H2O = nitrate + NADH + H+. [EC:1.7.1.1];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS10T0444566-00",2.4366800857439403E-3,0.0741488545614034,-6.25056721240274,"OS10G0444566",null,107.263809555262,48.556595626118,0,2.04652054305126,"no","OS10G0444566","Os10g0444566 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUS1]","Hypothetical gene. (Os10t0444566-00)",10,16027840,16029430]
["OS03T0183300-02",0.00244815796923282,0.0744240022646777,-0.663703061253334,"OS03G0183300",null,539.347848816597,649.911722075288,367.282204217336,383.444951271905,"no","OS03G0183300","AP2 domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10QU2]","Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os03t0183300-01);Similar to BTH-induced ERF transcriptional factor 4. (Os03t0183300-02)",3,4372266,4373460,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0311400-02",0.00245599063187996,0.0745138289823204,-0.39110459123205304,"OS04G0311400",null,1937.80922165468,2056.70041437878,1475.52726348457,1570.46825302861,"no","OS04G0311400","Os04g0311400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JE83]","Similar to Cysteine proteinase 1 precursor (EC 3.4.22.-). (Os04t0311400-01);Similar to OSIGBa0130O15.4 protein. (Os04t0311400-02)",4,14129614,14132212,"GO:0006508;GO:0008234;GO:0005764;GO:0051603;GO:0004197;GO:0005615;GO:0016787;GO:0008233","proteolysis;cysteine-type peptidase activity;lysosome;proteolysis involved in cellular protein catabolic process;cysteine-type endopeptidase activity;extracellular space;hydrolase activity;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions. [GOC:mah, ISBN:0198506732];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS07T0618400-02",0.00245381280934133,0.0745138289823204,-0.8843833403559811,"OS07G0618400",null,1253.57185231904,1056.83443849476,561.676525526551,689.914514079183,"no","OS07G0618400","Os07g0618400 protein [Source:UniProtKB/TrEMBL;Acc:Q0D4M3]","Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment). (Os07t0618400-01);Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment). (Os07t0618400-02)",7,25516454,25523182,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0723800-02",2.4643504208606303E-3,0.07459026989246009,0.42203296313923305,"OS01G0723800",null,997.492801385365,895.197701809961,1238.28378751955,1297.56985243307,"no","OS01G0723800","MDR-like ABC transporter [Source:UniProtKB/TrEMBL;Acc:Q8GU81]","Similar to P-glycoprotein homologue. (Os01t0723800-01);Hypothetical conserved gene. (Os01t0723800-02)",1,30189384,30195340,"GO:0042626;GO:0016887;GO:0055085;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;ATPase activity;transmembrane transport;transport;integral component of membrane;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0818800-00",0.0024658344000846,0.07459026989246009,-0.594965193666648,"OS03G0818800",null,377.67522453881,385.128884821216,261.956574030219,243.065840952884,"no","OS03G0818800","Os03g0818800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W4R4]","AP2 domain containing transcription factor, Control of inflorescence architecture, Floral meristem establishment (Os03t0818800-01);Similar to APETALA2-like protein. (Os03t0818800-02)",3,34358193,34362334,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0224000-01",2.4630469451044604E-3,0.07459026989246009,-0.5023953640538831,"OS12G0224000",null,621.744890849954,690.680606748416,479.071187772761,447.414223000774,"no","OS12G0224000","Os12g0224000 protein [Source:UniProtKB/TrEMBL;Acc:Q0IPC3]","Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1). (Os12t0224000-01)",12,6729703,6731831,"GO:0007205;GO:0004143;GO:0016310","protein kinase C-activating G-protein coupled receptor signaling pathway;diacylglycerol kinase activity;phosphorylation","The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG). [GOC:mah, GOC:signaling];Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol-3-phosphate. [EC:2.7.1.107, GOC:elh];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732]"]
["OS01T0608300-00",2.4693562190975103E-3,0.0746229190958133,1.7302078164329,"OS01G0608300",null,18.632790590443,21.7544293625511,58.3415998633503,75.6533439989077,"no","OS01G0608300","Os01g0608300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V526]","Similar to aspartic proteinase nepenthesin-2. (Os01t0608300-00)",1,24018634,24020111,"GO:0004190;GO:0006508","aspartic-type endopeptidase activity;proteolysis","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS03T0298700-01",2.4786447431461604E-3,0.0746490667744779,-0.38382332291257,"OS03G0298700",null,1391.86472809184,1516.2034780036,1085.60205328287,1143.15255963666,"no","OS03G0298700","Os03g0298700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KH39]","Hypothetical conserved gene. (Os03t0298700-01)",3,10470676,10477048,"GO:0005856;GO:0030036","cytoskeleton;actin cytoskeleton organization","Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:dph, GOC:jl, GOC:mah]"]
["OS08T0124500-02",2.47999485389157E-3,0.0746490667744779,-0.74861850397932,"OS08G0124500",null,443.840565886211,479.877576304328,254.296311899546,295.475980587696,"no","OS08G0124500","Os08g0124500 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZFB7]","Similar to Resistance protein candidate (Fragment). (Os08t0124500-01);Similar to Resistance protein candidate (Fragment). (Os08t0124500-02)",8,1340788,1343397,"GO:0016310;GO:0016301;GO:0030246;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;carbohydrate binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0115500-02",2.47314411870581E-3,0.0746490667744779,-0.510854519068878,"OS09G0115500",null,578.936226234056,527.017094866153,379.54927096457,396.61610161204,"no","OS09G0115500","CBS domain containing protein-like [Source:UniProtKB/TrEMBL;Acc:Q6YYV0]","Proteinase inhibitor I3, Kunitz legume domain containing protein. (Os09t0115500-01);Proteinase inhibitor I3, Kunitz legume domain containing protein. (Os09t0115500-02)",9,1221160,1224778]
["OS11T0306400-01",0.00247979058041575,0.0746490667744779,-1.22602398079641,"OS11G0306400",null,174.292420221872,131.754273716538,57.566598938071,73.2665212337512,"no","OS11G0306400","O-methyltransferase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R6G9]","Similar to Herbicide safener binding protein. (Os11t0306400-01)",11,11591738,11596168,"GO:0019438;GO:0008757;GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740","aromatic compound biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity","The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0668500-01",0.00248681248716044,0.0747806054209899,-1.28654277440613,"OS02G0668500",null,474.243493081001,327.576752105232,156.58603769875,172.105900092911,"no","OS02G0668500","Os02g0668500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VMS8]","Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein. (Os02t0668500-01);Similar to cellular retinaldehyde-binding/triple function, C-terminal. (Os02t0668500-02)",2,27137230,27138285]
["OS01T0857000-02",2.4958231493451104E-3,0.0749041147925263,0.412174592012225,"OS01G0857000",null,789.399288027946,755.929181886678,1003.42559557776,1052.92765227223,"no","OS01G0857000","RNA polymerase II C-terminal domain phosphatase-like 2 [Source:Projected from Arabidopsis thaliana (AT5G01270) UniProtKB/Swiss-Prot;Acc:Q5YDB5]","Double-stranded RNA-binding-like domain containing protein. (Os01t0857000-01);Similar to CPL2 (CTD phosphatase-like 2); double-stranded RNA binding. (Os01t0857000-02)",1,37023812,37031493,"GO:0003723;GO:0070940;GO:0008420;GO:0016591;GO:0004647;GO:0016791;GO:0006970;GO:0009733;GO:0009734;GO:0045893;GO:0048589;GO:0005634;GO:0005737","RNA binding;dephosphorylation of RNA polymerase II C-terminal domain;CTD phosphatase activity;DNA-directed RNA polymerase II, holoenzyme;phosphoserine phosphatase activity;phosphatase activity;response to osmotic stress;response to auxin;auxin-activated signaling pathway;positive regulation of transcription, DNA-templated;developmental growth;nucleus;cytoplasm","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. [GOC:krc, GOC:mah, PMID:17079683];Catalysis of the reaction: phospho-(DNA-directed RNA polymerase) + H2O = (DNA-directed RNA polymerase) + phosphate. [EC:3.1.3.16];A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters. [GOC:jl, GOC:krc, PMID:16858867, Wikipedia:Rna_polymerase_ii];Catalysis of the reaction: L(or D)-O-phosphoserine + H2O = L(or D)-serine + phosphate. [EC:3.1.3.3];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS05T0566200-01",0.00249364362492514,0.0749041147925263,1.07682294840386,"OS05G0566200",null,140.657040880809,106.021017131277,281.978764289873,238.360415747137,"no","OS05G0566200","Os05g0566200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQX3]","NLI interacting factor domain containing protein. (Os05t0566200-01)",5,28176577,28181817,"GO:0016791;GO:0016311;GO:0016020;GO:0016021","phosphatase activity;dephosphorylation;membrane;integral component of membrane","Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0540500-01",2.5034993707188E-3,0.0749418505654995,-0.47900376732528804,"OS04G0540500",null,590.62436415059,597.950717487178,441.771351043068,410.999052225994,"no","OS04G0540500","Os04g0540500 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBD2]","Hypothetical protein. (Os04t0540500-01)",4,27035636,27043531,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0604200-02",0.00250443929783238,0.0749418505654995,-0.7193039364797521,"OS06G0604200",null,294.083846346702,263.134416403095,168.308037348117,170.140998344962,"no","OS06G0604200","Phospholipase D [Source:UniProtKB/TrEMBL;Acc:Q69X22]","Chloroplast-localized phospholipase D, Herbivore defense (Os06t0604200-02)",6,23908918,23913796,"GO:0070290;GO:0004630;GO:0016042;GO:0046470;GO:0005509;GO:0016787;GO:0003824;GO:0016020","N-acylphosphatidylethanolamine-specific phospholipase D activity;phospholipase D activity;lipid catabolic process;phosphatidylcholine metabolic process;calcium ion binding;hydrolase activity;catalytic activity;membrane","Catalysis of the release of N-acylethanolamine from N-acyl-phosphatidylethanolamine (NAPE) to generate N-acylethanolamine (NAE). [GOC:elh, PMID:14634025, PMID:15878693];Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. [EC:3.1.4.4];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0644200-03",2.50208821989866E-3,0.0749418505654995,-0.455191228726295,"OS06G0644200",null,10595.6310366157,11141.1789577417,7416.05008130433,8439.07218878543,"no","OS06G0644200","Inorganic diphosphatase, H+-translocating, vacuolar membrane [Source:UniProtKB/TrEMBL;Acc:Q67WN5]","Similar to Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Vacuolar H+-pyrophosphatase). (Os06t0644200-01);Similar to Vacuolar H+-pyrophosphatase. (Os06t0644200-02);Similar to Vacuolar H+-pyrophosphatase. (Os06t0644200-03)",6,26272898,26278664,"GO:0015992;GO:0009678;GO:0004427;GO:0055085;GO:0016020;GO:0016021;GO:0016787","proton transport;hydrogen-translocating pyrophosphatase activity;inorganic diphosphatase activity;transmembrane transport;membrane;integral component of membrane;hydrolase activity","The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Catalysis of the hydrolysis of pyrophosphate, which generates a proton motive force. [GOC:mtg_transport, ISBN:0815340729, TC:3.A.10.-.-];Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. [EC:3.6.1.1, RHEA:24579];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0638100-01",2.5075517779884903E-3,0.0749615674374797,0.7061868281246311,"OS07G0638100",null,199.773768207526,176.015475043188,321.982672026499,291.112311035438,"no","OS07G0638100","Os07g0638100 protein [Source:UniProtKB/TrEMBL;Acc:Q8GVH2]","Six-bladed beta-propeller, TolB-like domain containing protein. (Os07t0638100-01)",7,26542983,26545180]
["OS01T0362100-01",0.0025144536489756,0.0750944163084091,-0.9479238142174881,"OS01G0362100",null,417.894106964723,510.547810651586,265.391778155175,215.89201590212,"no","OS01G0362100","Esterase/lipase/thioesterase-like protein [Source:UniProtKB/TrEMBL;Acc:Q5ZC21]","Esterase/lipase/thioesterase domain containing protein. (Os01t0362100-01)",1,14754835,14764507,"GO:0010287;GO:0016747;GO:0033306;GO:0004144","plastoglobule;transferase activity, transferring acyl groups other than amino-acyl groups;phytol metabolic process;diacylglycerol O-acyltransferase activity","A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways involving phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol. [CHEBI:17327, GOC:mah];Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol. [EC:2.3.1.20]"]
["OS01T0105800-01",2.5233521858767103E-3,0.0751063566966006,1.3863953268303,"OS01G0105800",null,33.6353793410631,29.8505776389032,84.8863408069861,81.081616832018,"no","OS01G0105800","IscA-like [Source:UniProtKB/TrEMBL;Acc:Q657Z2]","Similar to Iron sulfur assembly protein 1. (Os01t0105800-01)",1,306871,308842,"GO:0008198;GO:0016226;GO:0051537;GO:0097428;GO:0005198;GO:0051536;GO:0005759","ferrous iron binding;iron-sulfur cluster assembly;2 iron, 2 sulfur cluster binding;protein maturation by iron-sulfur cluster transfer;structural molecule activity;iron-sulfur cluster binding;mitochondrial matrix","Interacting selectively and non-covalently with ferrous iron, Fe(II). [GOC:ai];The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];The transfer of an assembled iron-sulfur cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. [GOC:al, GOC:mah, PMID:11939799, PMID:18322036, PMID:21977977];The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. [GOC:mah, GOC:vw];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732]"]
["OS01T0838200-00",0.00252053440167432,0.0751063566966006,-0.54584717483278,"OS01G0838200",null,491.280389163406,543.486379080721,343.448183494932,365.355719218972,"no","OS01G0838200","Os01g0838200 protein [Source:UniProtKB/TrEMBL;Acc:Q943M6]","Conserved hypothetical protein. (Os01t0838200-00)",1,35952915,35953433]
["OS02T0734600-02",2.52468670880495E-3,0.0751063566966006,-0.40967832966932805,"OS02G0734600",null,2267.83997072319,2402.4568348,1660.65002360334,1855.10831763858,"no","OS02G0734600","Os02g0734600 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z2H7]","Similar to EFA27 for EF hand, abscisic acid, 27kD. (Os02t0734600-01);Similar to caleosin related protein. (Os02t0734600-02)",2,30642392,30654596,"GO:0005509;GO:0016020;GO:0016021","calcium ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0390500-04",2.5197621619970603E-3,0.0751063566966006,0.41920573026671704,"OS04G0390500","YSL6",3406.58439055427,3795.3183608562,4651.95456883399,4978.36617652999,"no","OS04G0390500","Probable metal-nicotianamine transporter YSL6 [Source:UniProtKB/Swiss-Prot;Acc:Q7XRV2]","Similar to OSIGBa0132D06.2 protein. (Os04t0390500-01);Mn-nicotianamine transporter, Detoxification of excess manganese (Os04t0390500-02);Iron-phytosiderophore transporter protein yellow stripe 1. (Os04t0390500-03);Similar to OSIGBa0132D06.2 protein. (Os04t0390500-04)",4,19220804,19225330,"GO:0022857;GO:0005774;GO:0006810;GO:0055085;GO:0016020;GO:0016021","transmembrane transporter activity;vacuolar membrane;transport;transmembrane transport;membrane;integral component of membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0668600-01",2.5421473490637803E-3,0.0755522235492184,0.46922940950933206,"OS04G0668600",null,430.125153997837,443.641343529907,616.645602184083,592.970378518493,"no","OS04G0668600","OSJNBa0043A12.13 protein [Source:UniProtKB/TrEMBL;Acc:Q7XR72]","Kelch-type beta propeller domain containing protein. (Os04t0668600-01)",4,34110319,34112130,"GO:0031146;GO:0004842;GO:0016567","SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;ubiquitin-protein transferase activity;protein ubiquitination","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS10T0413500-01",0.00254837335680053,0.0755901968902619,0.66737528822676,"OS10G0413500",null,426.487953297249,397.20031137847,609.253427792686,698.912575988512,"no","OS10G0413500","Os10g0413500 protein [Source:UniProtKB/TrEMBL;Acc:Q109P7]","2OG-Fe(II) oxygenase domain containing protein. (Os10t0413500-01);Similar to Prolyl 4-hydroxylase. (Os10t0413500-03)",10,14428234,14432381,"GO:0031418;GO:0016705;GO:0005506;GO:0016491;GO:0055114","L-ascorbic acid binding;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidoreductase activity;oxidation-reduction process","Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. [CHEBI:38290, GOC:mah];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS12T0182200-02",2.5467099701733604E-3,0.0755901968902619,-0.397043179696054,"OS12G0182200",null,1804.64189855809,2031.70391286189,1460.1358783049,1453.23544617489,"no","OS12G0182200","Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:Q2QWU7]","Similar to Dihydrolipoamide S-acetyltransferase. (Os12t0182200-01);Similar to Dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex. (Os12t0182200-02)",12,4171993,4176907,"GO:0016746;GO:0008152;GO:0016740;GO:0019904;GO:0005886;GO:0009507;GO:0009941;GO:0022626","transferase activity, transferring acyl groups;metabolic process;transferase activity;protein domain specific binding;plasma membrane;chloroplast;chloroplast envelope;cytosolic ribosome","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Interacting selectively and non-covalently with a specific domain of a protein. [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];A ribosome located in the cytosol. [GOC:mtg_sensu]"]
["OS02T0779200-02",2.5703524145274E-3,0.0760207231061384,0.5832794809088361,"OS02G0779200",null,1329.92010925963,1119.53453058892,1788.9728822054,1880.92534791188,"no","OS02G0779200","Os02g0779200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K7G5]","Similar to Subtilisin-like protease (Fragment). (Os02t0779200-01);Similar to Subtilisin protease (Fragment). (Os02t0779200-02)",2,32985102,32987845,"GO:0004252;GO:0006508;GO:0016787","serine-type endopeptidase activity;proteolysis;hydrolase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0283100-02",2.5701414291498504E-3,0.0760207231061384,0.538159466220637,"OS03G0283100","GSTZ5",1132.19740011768,1302.96909737257,1692.00503439084,1844.14596634689,"no","OS03G0283100","Protein IN2-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8H8U5]","Similar to In2-1 protein. (Os03t0283100-01);Similar to In2-1 protein. (Os03t0283100-02)",3,9712224,9714920,"GO:0005737;GO:0004364;GO:0006749;GO:0010731","cytoplasm;glutathione transferase activity;glutathione metabolic process;protein glutathionylation","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. [GOC:BHF, GOC:dph, GOC:rl, GOC:tb]"]
["OS03T0826600-02",2.56907424620282E-3,0.0760207231061384,-0.313742278320214,"OS03G0826600",null,5576.52841781637,5753.27638058089,4480.93123159438,4634.48681360973,"no","OS03G0826600","Os03g0826600 protein [Source:UniProtKB/TrEMBL;Acc:Q94GF2]","Similar to Phospholipase (Fragment). (Os03t0826600-01);Non-specific phospholipase C1, Modulation of silicon distribution, Mechanical strength, Seed shattering (Os03t0826600-02)",3,34724328,34727241,"GO:0016788;GO:0016787;GO:0008152;GO:0003824;GO:0016311;GO:0003993;GO:0009395","hydrolase activity, acting on ester bonds;hydrolase activity;metabolic process;catalytic activity;dephosphorylation;acid phosphatase activity;phospholipid catabolic process","Catalysis of the hydrolysis of any ester bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732]"]
["OS08T0157600-01",2.5732922556412703E-3,0.0760340667256791,0.661271207438553,"OS08G0157600",null,4589.38438368234,3914.7277567947,7144.09160141747,6304.95341144605,"no","OS08G0157600","Os08g0157600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7W9]","MYB transcription factor, Circadian clock (Os08t0157600-01);Similar to LHY protein. (Os08t0157600-02);Similar to LHY protein. (Os08t0157600-03)",8,3360865,3373395,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0427000-01",0.00257914062655216,0.076133240987847,-0.49780127041145406,"OS03G0427000",null,647.226238835608,696.856588328879,499.560994174447,452.298657749691,"no","OS03G0427000","Circadian clock coupling factor, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q75I58]","Similar to Circadian clock coupling factor ZGT. (Os03t0427000-01)",3,17840098,17844363]
["OS01T0276800-03",0.0025907063600806,0.0762536230377482,0.49144443104536506,"OS01G0276800",null,744.962441878882,791.051842377263,1151.92736948212,1007.48094590443,"no","OS01G0276800","Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q5NBP9]","Mannose-6-phosphate receptor, binding domain containing protein. (Os01t0276800-01);Similar to predicted protein. (Os01t0276800-02);Hypothetical conserved gene. (Os01t0276800-03);Similar to predicted protein. (Os01t0276800-04);Similar to predicted protein. (Os01t0276800-05)",1,9702737,9709686,"GO:0006491;GO:0005736;GO:0005666;GO:0005665;GO:0006383;GO:0006366;GO:0006360;GO:0001055;GO:0001056;GO:0001054;GO:0003899;GO:0007018;GO:0008017;GO:0003777;GO:0006351;GO:0003677;GO:0005524;GO:0000166;GO:0006952;GO:0005783;GO:0042742","N-glycan processing;DNA-directed RNA polymerase I complex;DNA-directed RNA polymerase III complex;DNA-directed RNA polymerase II, core complex;transcription from RNA polymerase III promoter;transcription from RNA polymerase II promoter;transcription from RNA polymerase I promoter;RNA polymerase II activity;RNA polymerase III activity;RNA polymerase I activity;DNA-directed 5'-3' RNA polymerase activity;microtubule-based movement;microtubule binding;microtubule motor activity;transcription, DNA-templated;DNA binding;ATP binding;nucleotide binding;defense response;endoplasmic reticulum;defense response to bacterium","The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. [ISBN:0879695595, PMID:12736198];RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. [GOC:jl, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]"]
["OS04T0679900-01",2.5868407934040902E-3,0.0762536230377482,-0.45384452868914904,"OS04G0679900",null,917.328527483539,961.394466025366,726.90027472649,644.74538685701,"no","OS04G0679900","Tetraspanin-19 [Source:Projected from Arabidopsis thaliana (AT2G20740) UniProtKB/Swiss-Prot;Acc:Q940P5]","Tetraspanin domain containing protein. (Os04t0679900-01)",4,34717887,34721250,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0499500-01",2.5901075993122E-3,0.0762536230377482,0.339173086743555,"OS05G0499500",null,1113.02528001336,1128.14596869786,1426.48080758407,1408.67098158759,"no","OS05G0499500","Os05g0499500 protein [Source:UniProtKB/TrEMBL;Acc:B7FA11]","Similar to predicted protein. (Os05t0499500-01)",5,24589278,24593259,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0593000-01",2.5964285758167103E-3,0.076348494560493,-1.5325200005931499,"OS11G0593000",null,541.223831215288,399.380142203257,133.671594144334,191.469842157536,"no","OS11G0593000","NA","Phosphoesterase family protein. (Os11t0593000-01)","NA","NA","NA","NA","NA","NA"]
["OS05T0111800-00",2.6043512344749702E-3,0.0764137465088295,-1.3351830883681801,"OS05G0111800",null,93.7713605872062,88.5224026532992,32.1982672026499,40.0523649411173,"no","OS05G0111800","Os05g0111800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WH45]","Similar to Protein phosphatase type 2C. (Os05t0111800-00)",5,629508,632454,"GO:0004721;GO:0006470;GO:0004722;GO:0046872;GO:0016787;GO:0003824","phosphoprotein phosphatase activity;protein dephosphorylation;protein serine/threonine phosphatase activity;metal ion binding;hydrolase activity;catalytic activity","Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS05T0548900-01",2.6061509512372402E-3,0.0764137465088295,0.459294919903015,"OS05G0548900",null,2494.43224817717,2697.26316441152,3776.23162667656,3361.67320038865,"no","OS05G0548900","Os05g0548900 protein [Source:UniProtKB/TrEMBL;Acc:B7FA34]","Similar to Phosphoethanolamine methyltransferase. (Os05t0548900-01)",5,27229414,27233659,"GO:0032259;GO:0006656;GO:0000234;GO:0008757;GO:0005737;GO:0008168;GO:0008152;GO:0016740","methylation;phosphatidylcholine biosynthetic process;phosphoethanolamine N-methyltransferase activity;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;methyltransferase activity;metabolic process;transferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. [ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methionine + ethanolamine phosphate = S-adenosyl-L-homocysteine + N-methylethanolamine phosphate. [EC:2.1.1.103];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0420700-01",0.00260121766027611,0.0764137465088295,-0.507592119750175,"OS08G0420700",null,871.462101109362,776.115018611484,550.297657645289,608.600569715026,"no","OS08G0420700","Os08g0420700 protein [Source:UniProtKB/TrEMBL;Acc:Q8H341]","Conserved hypothetical protein. (Os08t0420700-01)",8,20144271,20145545]
["OS02T0629800-01",2.62208424877223E-3,0.0768072080234796,-0.586633388237987,"OS02G0629800",null,746.093869019945,828.610862045417,485.901123239989,562.686883075209,"no","OS02G0629800","Os02g0629800 protein [Source:UniProtKB/TrEMBL;Acc:Q6K209]","Similar to Defensin precursor. (Os02t0629800-01)",2,25190487,25191188,"GO:0006952","defense response","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS01T0795400-01",2.62844879763242E-3,0.0769098079827772,1.5979358980234801,"OS01G0795400",null,62.2908265205918,49.7495214601838,133.94437219711,205.212862386196,"no","OS01G0795400","Os01g0795400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JIK4]","Similar to Subtilase. (Os01t0795400-01)",1,33691811,33696348,"GO:0004252;GO:0008236;GO:0006508;GO:0016787;GO:0008233","serine-type endopeptidase activity;serine-type peptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS05T0113000-01",2.6321973754249604E-3,0.0769098079827772,-0.38800684429166804,"OS05G0113000",null,1249.98022170369,1305.13906371591,947.738077007279,1004.84482151413,"no","OS05G0113000","ACT domain-containing protein ACR9 [Source:Projected from Arabidopsis thaliana (AT2G39570) UniProtKB/Swiss-Prot;Acc:O80644]","Amino acid-binding ACT domain containing protein. (Os05t0113000-01);Similar to Amino acid binding protein. (Os05t0113000-02)",5,701583,705308]
["OS09T0573200-03",0.0026331388828877,0.0769098079827772,-0.8732166170650121,"OS09G0573200",null,575.531219438938,562.788215468805,328.613553820682,292.827236658438,"no","OS09G0573200","Os09g0573200 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z480]","Hypothetical conserved gene. (Os09t0573200-01);Protein of unknown function DUF3550/UPF0682 domain containing protein. (Os09t0573200-02);Similar to predicted protein. (Os09t0573200-03)",9,22934014,22939008,"GO:0003714;GO:0005634;GO:1903507;GO:0006351;GO:0005829","transcription corepressor activity;nucleus;negative regulation of nucleic acid-templated transcription;transcription, DNA-templated;cytosol","Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription. [GO_REF:0000058, GOC:pr, GOC:TermGenie, GOC:txnOH, GOC:vw];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0754500-01",2.6529822883043404E-3,0.07717644297775701,0.5511211068668831,"OS01G0754500",null,567.55328020658,494.759587062433,784.202773044991,772.323394825208,"no","OS01G0754500","Os01g0754500 protein [Source:UniProtKB/TrEMBL;Acc:Q5JML5]","Protein of unknown function DUF1421 family protein. (Os01t0754500-01);Hypothetical conserved gene. (Os01t0754500-02)",1,31651616,31656436]
["OS01T0971500-01",0.00265093443677648,0.07717644297775701,-0.302900745249774,"OS01G0971500",null,5123.78945295528,5285.61090261269,4257.00120621702,4181.07614507273,"no","OS01G0971500","Os01g0971500 protein [Source:UniProtKB/TrEMBL;Acc:Q94DH6]","Similar to Cytochrome b5. (Os01t0971500-01)",1,42858783,42860399,"GO:0020037;GO:0046872;GO:0016020;GO:0016021","heme binding;metal ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0394200-02",0.00266500220416122,0.07717644297775701,"-Inf","OS04G0394200",null,33.0199797754047,133.3856494283,0,0,"no","OS04G0394200","OSJNBa0072K14.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XVM2]","Similar to 2-oxoglutarate dehydrogenase E2 subunit. (Os04t0394200-01);Similar to 2-oxoglutarate dehydrogenase E2 subunit. (Os04t0394200-02);Similar to 2-oxoglutarate dehydrogenase E2 subunit. (Os04t0394200-03)",4,19378313,19382689,"GO:0045252;GO:0004149;GO:0016746;GO:0006099;GO:0008152;GO:0019538;GO:0016818;GO:0008026;GO:0006260;GO:0050660;GO:0030163;GO:0005623;GO:0045454;GO:0090305;GO:0006139;GO:0008408;GO:0055114;GO:0016491;GO:0003676;GO:0008375;GO:0005524;GO:0003824;GO:0016020;GO:0004148","oxoglutarate dehydrogenase complex;dihydrolipoyllysine-residue succinyltransferase activity;transferase activity, transferring acyl groups;tricarboxylic acid cycle;metabolic process;protein metabolic process;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicase activity;DNA replication;flavin adenine dinucleotide binding;protein catabolic process;cell;cell redox homeostasis;nucleic acid phosphodiester bond hydrolysis;nucleobase-containing compound metabolic process;3'-5' exonuclease activity;oxidation-reduction process;oxidoreductase activity;nucleic acid binding;acetylglucosaminyltransferase activity;ATP binding;catalytic activity;membrane;dihydrolipoyl dehydrogenase activity","A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). [MetaCyc:CPLX66-42, PMID:10848975];Catalysis of the reaction: succinyl-CoA + dihydrolipoamide = CoA + S-succinyldihydrolipoamide. [EC:2.3.1.61];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma];Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. [EC:3.6.1.3, GOC:jl];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+. [EC:1.8.1.4]"]
["OS05T0468550-01",2.66155552939089E-3,0.07717644297775701,-1.88003630044819,"OS05G0468550",null,559.535665933941,572.307613995554,160.963045919547,146.532604718712,"no","OS05G0468550","Os05g0468550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WND2]","Hypothetical gene. (Os05t0468550-01)",5,22996896,23005544]
["OS07T0533800-01",0.00266324964472438,0.07717644297775701,-1.3042989542823,"OS07G0533800",null,88.5621860417688,86.0642719879824,32.3872930765666,38.3220718549139,"no","OS07G0533800","Os07g0533800 protein [Source:UniProtKB/TrEMBL;Acc:Q0D5V1]","Peptidase A1 domain containing protein. (Os07t0533800-01)",7,20931661,20933256,"GO:0030163;GO:0006508;GO:0004190;GO:0003677;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;DNA binding;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS08T0434300-01",0.00265246686228801,0.07717644297775701,-0.357859867472376,"OS08G0434300",null,2115.5683668127,2237.62304784133,1629.3525208716,1767.53533681516,"no","OS08G0434300","Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0J5H3]","Similar to Malate dehydrogenase precursor (EC 1.1.1.37). (Os08t0434300-01)",8,21054660,21056008,"GO:0006099;GO:0030060;GO:0016615;GO:0006108;GO:0016616;GO:0055114;GO:0016491;GO:0005975;GO:0019752;GO:0003824","tricarboxylic acid cycle;L-malate dehydrogenase activity;malate dehydrogenase activity;malate metabolic process;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process;carboxylic acid metabolic process;catalytic activity","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. [EC:1.1.1.37];Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. [GOC:mah, ISBN:0582227089];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS10T0568900-01",2.6623717242656203E-3,0.07717644297775701,-0.771623329170751,"OS10G0568900",null,598.302050703153,678.328643587491,411.74753816722,336.049110725472,"no","OS10G0568900","Os10g0568900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XXQ7]","Similar to Catalytic/ hydrolase. (Os10t0568900-01)",10,22555971,22557879]
["OS11T0132600-01",2.6623997015117903E-3,0.07717644297775701,1.01288754444069,"OS11G0132600",null,90.9734481483072,84.619694925329,175.364449251353,178.973025505466,"no","OS11G0132600","Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAZ2]","Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0132600-01);Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os11t0132600-02)",11,1484073,1491751,"GO:0046373;GO:0046556;GO:0009505;GO:0016787","L-arabinose metabolic process;alpha-L-arabinofuranosidase activity;plant-type cell wall;hydrolase activity","The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. [CHEBI:30849, GOC:jsg, GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. [EC:3.2.1.55, GOC:mf];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS11T0689100-01",0.00265429876044928,0.07717644297775701,-0.706336711230639,"OS11G0689100",null,272.48242065232,256.303235589204,166.085803091631,157.993375123247,"no","OS11G0689100","NB-ARC domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QZF1]","NB-ARC domain containing protein. (Os11t0689100-01);Similar to NBS-LRR class disease resistance protein. (Os11t0689100-02)",11,27984697,27989128,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS01T0221600-00",2.6699590636069903E-3,0.07724677018117501,2.63120307661881,"OS01G0221600",null,6.11552351655692,6.17598158046274,38.0524976031317,38.0985910415506,"no","OS01G0221600","Os01g0221600 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDE9]","Malate transporter, aliminium toerance domain containing protein. (Os01t0221600-00)",1,6659237,6662320,"GO:0009705;GO:0071423;GO:0015140;GO:0015743;GO:0016020;GO:0016021","plant-type vacuole membrane;malate transmembrane transport;malate transmembrane transporter activity;malate transport;membrane;integral component of membrane","The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0471245208];A process in which a malate ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Enables the transfer of malate from one side of the membrane to the other. Malate is a chiral hydroxydicarboxylic acid, hydroxybutanedioic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [GOC:ai];The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0156600-02",2.68049111339316E-3,0.077478112106327,-1.6342000225159299,"OS08G0156600",null,722.206393917968,786.72427222354,182.291226480907,303.809263844496,"no","OS08G0156600","Os08g0156600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7X7]","Major facilitator superfamily protein. (Os08t0156600-01);Similar to glycerol 3-phosphate permease. (Os08t0156600-02)",8,3281105,3284469,"GO:0055085;GO:0016021;GO:0016020;GO:0006810;GO:0005215","transmembrane transport;integral component of membrane;membrane;transport;transporter activity","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS05T0156500-01",0.00268472742293577,0.07748204411811101,-0.32712846762881403,"OS05G0156500",null,2697.96512472103,2843.01018753968,2151.42967217706,2265.40083654759,"no","OS05G0156500",null,"Similar to Apobec-1 binding protein 2. (Os05t0156500-01)",5,3305712,3307705,"GO:0005515;GO:0005788;GO:0005783;GO:0006457;GO:0051082","protein binding;endoplasmic reticulum lumen;endoplasmic reticulum;protein folding;unfolded protein binding","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The volume enclosed by the membranes of the endoplasmic reticulum. [ISBN:0198547684];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai]"]
["OS11T0240600-02",2.6856992904254902E-3,0.07748204411811101,"Inf","OS11G0240600",null,0,0,45.8581381371074,55.6825561376509,"no","OS11G0240600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53M20]","Alpha/beta hydrolase fold-3 domain containing protein. (Os11t0240600-01);Similar to gibberellin receptor GID1L2. (Os11t0240600-02)",11,7494023,7495459,"GO:0016787;GO:0008152;GO:0009056","hydrolase activity;metabolic process;catabolic process","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684]"]
["OS07T0611500-00",0.00269425998572816,0.0776151267166228,-3.5875242310025,"OS07G0611500",null,298.584777471614,253.202368503824,10.7327557342166,35.1679301922006,"no","OS07G0611500","CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q8H5Y4]","C1-like domain containing protein. (Os07t0611500-00)",7,25187993,25188788,"GO:0004791;GO:0005737;GO:0005622;GO:0035556;GO:0098869","thioredoxin-disulfide reductase activity;cytoplasm;intracellular;intracellular signal transduction;cellular oxidant detoxification","Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS12T0256000-01",2.6953930821660404E-3,0.0776151267166228,-0.539492465689681,"OS12G0256000",null,605.436828139136,695.827258065468,428.334524301918,466.951961996441,"no","OS12G0256000","Esterase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QUR1]","Alpha/beta hydrolase fold-3 domain containing protein. (Os12t0256000-01)",12,8792353,8797234,"GO:0009056;GO:0016787;GO:0008152","catabolic process;hydrolase activity;metabolic process","The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS02T0782900-01",2.70094761243271E-3,0.07762874078555419,-0.410359710197067,"OS02G0782900",null,1779.59443604407,2009.3959100274,1401.76413357898,1449.20763619038,"no","OS02G0782900","Os02g0782900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DX03]","Conserved hypothetical protein. (Os02t0782900-01)",2,33220361,33221120]
["OS03T0130900-02",2.6993995375786603E-3,0.07762874078555419,0.507926500288146,"OS03G0130900",null,498.043086016346,508.640522222326,759.385514007595,672.123573188395,"no","OS03G0130900","Os03g0130900 protein [Source:UniProtKB/TrEMBL;Acc:Q10S85]","Serine/threonine protein kinase domain containing protein. (Os03t0130900-01);Serine/threonine protein kinase domain containing protein. (Os03t0130900-02)",3,1765350,1770210,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0332100-00",2.7089754306089103E-3,0.0777288407494134,-0.6012160419236311,"OS03G0332100","CYP714B2",342.410886625181,362.324252720481,235.016032535046,229.544022246593,"no","OS03G0332100","Cytochrome P450 714B2 [Source:UniProtKB/Swiss-Prot;Acc:Q0DS59]","Similar to Cytochrome P450 CYP714B3. (Os03t0332100-00)",3,12235398,12249872,"GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0719800-01",2.7095187024785703E-3,0.0777288407494134,0.31524924116082104,"OS03G0719800","PHYA",2917.84997624343,2899.25099663581,3743.65659028198,3494.13510713032,"no","OS03G0719800","Phytochrome A [Source:UniProtKB/Swiss-Prot;Acc:Q10DU0]","Phytochrome A, Photoreceptor (Os03t0719800-01)",3,29168197,29176006,"GO:0018298;GO:0017006;GO:0009585;GO:0009584;GO:0009881;GO:0042803;GO:0000160;GO:0023014;GO:0000155;GO:0005622;GO:0007165;GO:0006355;GO:0006351;GO:0050896;GO:0003729;GO:0004672;GO:0031516;GO:0042802;GO:0009630;GO:0009638;GO:0009640;GO:0010161;GO:0010201;GO:0010203;GO:0010218;GO:0017148;GO:0046685;GO:0005634;GO:0005737;GO:0016604","protein-chromophore linkage;protein-tetrapyrrole linkage;red, far-red light phototransduction;detection of visible light;photoreceptor activity;protein homodimerization activity;phosphorelay signal transduction system;signal transduction by protein phosphorylation;phosphorelay sensor kinase activity;intracellular;signal transduction;regulation of transcription, DNA-templated;transcription, DNA-templated;response to stimulus;mRNA binding;protein kinase activity;far-red light photoreceptor activity;identical protein binding;gravitropism;phototropism;photomorphogenesis;red light signaling pathway;response to continuous far red light stimulus by the high-irradiance response system;response to very low fluence red light stimulus;response to far red light;negative regulation of translation;response to arsenic-containing substance;nucleus;cytoplasm;nuclear body","The covalent or noncovalent attachment of a chromophore to a protein. [GOC:ma];The covalent linking of a tetrapyrrole to a protein. [GOC:ai];The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. [GOC:mah];The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. [GOC:go_curators, ISBN:0198506732];The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. [GOC:ai, GOC:go_curators];Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. [GOC:ai, GOC:bf];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 730nm. The response may involve a change in conformation. [GOC:nln];Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl];The orientation of plant parts under the stimulation of gravity. [ISBN:0198547684];The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. [GOC:jl, GOC:mtg_far_red, PMID:16870491];The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr];The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence. [GOC:mtg_far_red, GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Very low fluence red light is defined in this case as short pulses of red light followed by darkness, providing light levels of less than 0.001 mmol/m2/sec. [GOC:mtg_far_red, GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb];Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. [GOC:hjd, ISBN:0721662544];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. [GOC:ma, PMID:10330182]"]
["OS03T0165400-02",0.00271869722751195,0.0778459584769869,-0.37122099786738205,"OS03G0165400",null,1273.18379588391,1330.95132739554,1038.50764207491,974.821870650634,"no","OS03G0165400","Beta-galactosidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10RB4]","Similar to Relative to SR12 protein (Fragment). (Os03t0165400-01);Similar to Beta-galactosidase. (Os03t0165400-02)",3,3525115,3531350,"GO:0030246;GO:0004553;GO:0005975;GO:0005618;GO:0004565;GO:0005773;GO:0008152;GO:0016798;GO:0048046;GO:0016787;GO:0005576","carbohydrate binding;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;cell wall;beta-galactosidase activity;vacuole;metabolic process;hydrolase activity, acting on glycosyl bonds;apoplast;hydrolase activity;extracellular region","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides. [EC:3.2.1.23];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS11T0252400-03",0.00271681807660235,0.0778459584769869,-0.6605991909866671,"OS11G0252400",null,788.458777696982,672.191316381896,491.24091527912,432.788973981904,"no","OS11G0252400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53N02]","Ankyrin repeat containing protein. (Os11t0252400-01);Hypothetical conserved gene. (Os11t0252400-02);Hypothetical conserved gene. (Os11t0252400-03)",11,8198320,8201961,"GO:0007165;GO:0016020;GO:0016021;GO:0016310;GO:0016301;GO:0006508;GO:0008234","signal transduction;membrane;integral component of membrane;phosphorylation;kinase activity;proteolysis;cysteine-type peptidase activity","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE]"]
["OS02T0184400-02",2.7302521452763303E-3,0.0781036175491408,16.7702101148409,"OS02G0184400",null,0.00312661087294127,1.51309442473379E-6,211.66452348166,137.974769971445,"no","OS02G0184400","Os02g0184400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFT3]","Similar to Sucrose-phosphate synthase 9 (EC 2.4.1.14). (Os02t0184400-01);Sucrose-phosphate synthase 9 (EC 2.4.1.14). (Os02t0184400-02);Sucrose-phosphate synthase 9 (EC 2.4.1.14). (Os02t0184400-03);Similar to cDNA clone:J023150H16, full insert sequence. (Os02t0184400-04)",2,4708493,4716880,"GO:0005986;GO:0046524;GO:0005985;GO:0016157;GO:0016757;GO:0016740","sucrose biosynthetic process;sucrose-phosphate synthase activity;sucrose metabolic process;sucrose synthase activity;transferase activity, transferring glycosyl groups;transferase activity","The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate. [EC:2.4.1.14];The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose. [EC:2.4.1.13];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0178600-01",2.7333166770662203E-3,0.0781181394927289,-0.344032954051733,"OS05G0178600","IAA15",1720.44052839185,1833.31109534093,1364.6976498381,1435.07542380445,"no","OS05G0178600","Auxin-responsive protein IAA15 [Source:UniProtKB/Swiss-Prot;Acc:Q6AT10]","Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os05t0178600-01)",5,4681468,4684497,"GO:0009733;GO:0005634;GO:0009734;GO:0006355;GO:0006351","response to auxin;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0872600-01",2.73972461481224E-3,0.0781550573592375,-0.807426758274955,"OS01G0872600",null,305.22442753141,362.235949913749,208.06599305768,173.320946011045,"no","OS01G0872600","Os01g0872600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JHB8]","TGF-beta receptor, type I/II extracellular region family protein. (Os01t0872600-01)",1,37839529,37840372,"GO:0006810;GO:0005215;GO:0016020;GO:0016021","transport;transporter activity;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0699600-01",2.7374629511043302E-3,0.0781550573592375,0.43589320105211304,"OS03G0699600",null,566.705179200942,554.809011978236,789.345398998296,727.780777588595,"no","OS03G0699600","LysM domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q851T1]","Cyclin-like F-box domain containing protein. (Os03t0699600-01)",3,28046117,28048027]
["OS08T0103500-02",0.00274508833918804,0.0781621052552406,-0.36559209858712305,"OS08G0103500",null,2080.48256844322,2192.52544744121,1649.87784544218,1666.61847405513,"no","OS08G0103500","MAP3K-like protein [Source:UniProtKB/TrEMBL;Acc:Q69U53]","PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os08t0103500-01);PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os08t0103500-02)",8,195890,200315,"GO:0008081;GO:0006629;GO:0016020;GO:0016021","phosphoric diester hydrolase activity;lipid metabolic process;membrane;integral component of membrane","Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0198000-01",2.7435644639493503E-3,0.0781621052552406,-0.8510339762950131,"OS12G0198000",null,213.024069160066,183.220786887061,104.400442141925,115.272660074435,"no","OS12G0198000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QWE5]","Protein of unknown function DUF538 family protein. (Os12t0198000-01)",12,5070769,5071512]
["OS09T0308900-01",2.7513659068613104E-3,0.0782679061326135,-0.716353289591187,"OS09G0308900",null,1298.05413278518,1438.87122159827,750.410383440786,915.375299762866,"no","OS09G0308900","Os09g0308900 protein [Source:UniProtKB/TrEMBL;Acc:Q69L47]","Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein. (Os09t0308900-01);Similar to Lipid phosphate phosphatase 3. (Os09t0308900-02);Similar to lipid phosphate phosphatase 3. (Os09t0308900-03)",9,8151866,8158558,"GO:0016020;GO:0016021;GO:0008195;GO:0016311","membrane;integral component of membrane;phosphatidate phosphatase activity;dephosphorylation","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: a 1,2-diacylglycerol 3-phosphate + H2O = a 1,2-diacyl-sn-glycerol + phosphate. [EC:3.1.3.4, GOC:pr];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS10T0405600-01",2.7627534669168704E-3,0.0785187385313899,-0.45729372551678404,"OS10G0405600",null,620.725636930528,670.094001480207,472.241252305532,467.928848946224,"no","OS10G0405600","ATP-dependent 6-phosphofructokinase [Source:UniProtKB/TrEMBL;Acc:Q338G3]","Phosphofructokinase family protein. (Os10t0405600-01)",10,13848985,13853377,"GO:0003872;GO:0006002;GO:0003824;GO:0006096;GO:0061615;GO:0008152;GO:0005737;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0000166;GO:0016740","6-phosphofructokinase activity;fructose 6-phosphate metabolic process;catalytic activity;glycolytic process;glycolytic process through fructose-6-phosphate;metabolic process;cytoplasm;phosphorylation;kinase activity;metal ion binding;ATP binding;nucleotide binding;transferase activity","Catalysis of the reaction: ATP + D-fructose-6-phosphate = ADP + D-fructose 1,6-bisphosphate. [EC:2.7.1.11];The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH. [GOC:dph, ISBN:0201090910, ISBN:0879010479];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0662600-01",0.00277580816402738,0.0785245287290413,"Inf","OS01G0662600",null,0,0,60.2701773901868,35.6249549774177,"no","OS01G0662600","Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:Q8LR34]","Similar to NifU-like protein. (Os01t0662600-01);Similar to NifU-like protein. (Os01t0662600-02);Similar to nifU-like N-terminal domain-containing protein. (Os01t0662600-04);Non-protein coding transcript. (Os01t0662600-05)",1,27047365,27050478,"GO:0016226;GO:0005506;GO:0051536;GO:0008198;GO:0051539;GO:0051537;GO:0005759;GO:0005739;GO:0046872;GO:0097428;GO:0006879;GO:0036455","iron-sulfur cluster assembly;iron ion binding;iron-sulfur cluster binding;ferrous iron binding;4 iron, 4 sulfur cluster binding;2 iron, 2 sulfur cluster binding;mitochondrial matrix;mitochondrion;metal ion binding;protein maturation by iron-sulfur cluster transfer;cellular iron ion homeostasis;iron-sulfur transferase activity","The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Interacting selectively and non-covalently with ferrous iron, Fe(II). [GOC:ai];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The transfer of an assembled iron-sulfur cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. [GOC:al, GOC:mah, PMID:11939799, PMID:18322036, PMID:21977977];Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. [GOC:ai, GOC:mah];Catalysis of the transfer of a iron-sulfur cluster from one compound (donor) to another (acceptor). [GOC:bhm]"]
["OS02T0198700-02",0.00277394343325513,0.0785245287290413,-0.670776847432021,"OS02G0198700",null,454.848121981871,398.381950744261,251.736720926266,284.235403138714,"no","OS02G0198700","Os02g0198700 protein [Source:UniProtKB/TrEMBL;Acc:Q6H733]","Similar to Subtilisin-like protease. (Os02t0198700-01);Similar to Subtilisin-like protease. (Os02t0198700-02)",2,5530016,5536941,"GO:0004252;GO:0005096;GO:0043547;GO:0046872;GO:0006508;GO:0016787;GO:0008233","serine-type endopeptidase activity;GTPase activator activity;positive regulation of GTPase activity;metal ion binding;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS05T0310500-03",0.00277337852913615,0.0785245287290413,-0.6429763012020261,"OS05G0310500",null,6662.5188599074,7633.21272148569,4242.42995868072,4912.42002345814,"no","OS05G0310500","Os05g0310500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKI1]","Similar to Cathepsin B-like cysteine protease. (Os05t0310500-01);Similar to Cathepsin B-like cysteine protease. (Os05t0310500-02);Similar to cDNA clone:J013151C17, full insert sequence. (Os05t0310500-03)",5,14161390,14167285,"GO:0050790;GO:0004197;GO:0006508;GO:0008234;GO:0008233","regulation of catalytic activity;cysteine-type endopeptidase activity;proteolysis;cysteine-type peptidase activity;peptidase activity","Any process that modulates the activity of an enzyme. [GOC:ai, GOC:ebc, GOC:vw];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0270900-01",2.7701724964373704E-3,0.0785245287290413,0.397159057817744,"OS06G0270900",null,1297.05781129984,1355.72931479846,1666.05354645477,1827.43392988876,"no","OS06G0270900","Aldehyde dehydrogenase ALDH2b [Source:UniProtKB/TrEMBL;Acc:Q9FRX7]","Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2). (Os06t0270900-01);Similar to Aldehyde dehydrogenase. (Os06t0270900-02)",6,9091026,9096474,"GO:0055114;GO:0016491;GO:0008152;GO:0004029;GO:0004491","oxidation-reduction process;oxidoreductase activity;metabolic process;aldehyde dehydrogenase (NAD) activity;methylmalonate-semialdehyde dehydrogenase (acylating) activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+. [EC:1.2.1.3];Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+. [EC:1.2.1.27]"]
["OS10T0370000-02",2.77126188471882E-3,0.0785245287290413,0.33041293725318305,"OS10G0370000",null,2092.08766902392,2247.12855806382,2669.01656682336,2786.99769683218,"no","OS10G0370000","Probable protein phosphatase 2C 71 [Source:UniProtKB/Swiss-Prot;Acc:Q339D2]","Protein phosphatase 2C-related domain containing protein. (Os10t0370000-01);Protein phosphatase 2C-related domain containing protein. (Os10t0370000-02)",10,11629686,11634486,"GO:0006470;GO:0004721;GO:0046872;GO:0016787;GO:0003824","protein dephosphorylation;phosphoprotein phosphatase activity;metal ion binding;hydrolase activity;catalytic activity","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS10T0522000-01",2.7820714312622604E-3,0.0786289050582096,-0.77532898327418,"OS10G0522000",null,779.72028197156,709.208551489804,386.379206431799,483.535473611839,"no","OS10G0522000","Os10g0522000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XWT2]","Similar to Methyltransferase family protein, expressed. (Os10t0522000-01)",10,20210994,20214302,"GO:0032259;GO:0008168;GO:0016740","methylation;methyltransferase activity;transferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0186900-01",2.78602670915155E-3,0.0786679186857653,0.950257896649597,"OS03G0186900","AP25",305.776175827846,330.415014554756,528.832146176856,700.427942994661,"no","OS03G0186900","Aspartyl protease 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6F4N5]","Radc1. (Os03t0186900-01)",3,4541351,4543092,"GO:0030163;GO:0006508;GO:0004190;GO:0016787;GO:0008233;GO:0043067;GO:0009627;GO:0005618;GO:0009505;GO:0048046","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;hydrolase activity;peptidase activity;regulation of programmed cell death;systemic acquired resistance;cell wall;plant-type cell wall;apoplast","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl];The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS06T0264500-01",2.7892781490330702E-3,0.07868700462535401,0.9349458995422231,"OS06G0264500",null,428.7971264576,449.716924580982,721.902028154887,957.657774938646,"no","OS06G0264500","Protein NRT1/ PTR FAMILY 3.1 [Source:Projected from Arabidopsis thaliana (AT1G68570) UniProtKB/Swiss-Prot;Acc:Q9SX20]","TGF-beta receptor, type I/II extracellular region family protein. (Os06t0264500-01)",6,8739433,8744022,"GO:0006857;GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0010336;GO:0005886;GO:0097708","oligopeptide transport;transport;transporter activity;membrane;integral component of membrane;gibberellic acid homeostasis;plasma membrane;intracellular vesicle","The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any biological process involved in the maintenance of an internal steady state of gibberellic acid; may involve transport, biosynthesis, catabolism or conjugation. [PMID:17194763];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Any vesicle that is part of the intracellular region. [GOC:vesicles]"]
["OS10T0554800-01",0.00279269704192416,0.0787107749306889,-0.42643518933429,"OS10G0554800",null,1189.46932397032,1230.04966477549,842.033472602632,958.326097737465,"no","OS10G0554800","Os10g0554800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XXN0]","Plant lipid transfer protein and hydrophobic protein, helical domain containing protein. (Os10t0554800-01)",10,21786115,21787034]
["OS07T0196900-01",0.00280206354552027,0.0789019773665762,-0.300171390609596,"OS07G0196900",null,2632.66373839099,2629.91619535403,2173.806070064,2100.22931119732,"no","OS07G0196900","Os07g0196900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3K3]","Conserved hypothetical protein. (Os07t0196900-01)",7,5249181,5251071]
["OS07T0646600-01",2.8058064719925203E-3,0.0789346218529608,0.43858621025195,"OS07G0646600",null,918.904248844049,818.884632321518,1143.11566585512,1212.06712404126,"no","OS07G0646600","Os07g0646600 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIQ6]","Conserved hypothetical protein. (Os07t0646600-01)",7,26995075,27000533]
["OS02T0687500-01",0.00281098603108177,0.0790075853004695,0.7063451295259141,"OS02G0687500",null,441.336947111525,520.841113285691,727.875979793237,842.076550713247,"no","OS02G0687500","Os02g0687500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VN40]","Similar to S-ribonuclease binding protein SBP1. (Os02t0687500-01)",2,28160301,28161779]
["OS01T0935600-02",2.8284984282831403E-3,0.0790195724615619,0.871013302281839,"OS01G0935600",null,155.113950713486,152.785610218594,314.319281927002,248.812709462791,"no","OS01G0935600","Os01g0935600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCL7]","Immunoglobulin/major histocompatibility complex, conserved site domain containing protein. (Os01t0935600-01);Similar to Cold-induced thioredoxin domain-containing protein. (Os01t0935600-02);Similar to predicted protein. (Os01t0935600-03)",1,41066946,41070506,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0181900-01",2.8356464548346403E-3,0.0790195724615619,0.440578282316724,"OS02G0181900","CLPB3",500.453674438242,531.134415919795,691.774892323599,708.243038592928,"no","OS02G0181900","Chaperone protein ClpB3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0E3C8]","Similar to ClpB. (Os02t0181900-01)",2,4567630,4573049,"GO:0009408;GO:0019538;GO:0016485;GO:0005739;GO:0005737;GO:0005524;GO:0000166;GO:0009507;GO:0009570;GO:0009941","response to heat;protein metabolic process;protein processing;mitochondrion;cytoplasm;ATP binding;nucleotide binding;chloroplast;chloroplast stroma;chloroplast envelope","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma];Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein. [GOC:curators, GOC:jl, GOC:jsg];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS02T0822000-03",2.8256310393848304E-3,0.0790195724615619,-0.34405561435124205,"OS02G0822000",null,1852.56047163879,1930.81023347999,1447.64220077259,1532.98620936761,"no","OS02G0822000","Hydroxyproline-rich glycoprotein-like [Source:UniProtKB/TrEMBL;Acc:Q6K6Z8]","Conserved hypothetical protein. (Os02t0822000-01);Conserved hypothetical protein. (Os02t0822000-02);Hypothetical conserved gene. (Os02t0822000-03)",2,35280533,35284478]
["OS03T0333000-01",2.8220546657248503E-3,0.0790195724615619,0.43330327417362,"OS03G0333000",null,565.685925281516,553.61753565241,786.053954910911,725.365921908359,"no","OS03G0333000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10LW2]","Conserved hypothetical protein. (Os03t0333000-01)",3,12291929,12296841]
["OS03T0737000-01",0.00283172233746186,0.0790195724615619,0.358749547812982,"OS03G0737000",null,11940.9664731519,11904.8001289539,14893.569205271,15684.1905160292,"no","OS03G0737000","Os03g0737000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KI05]","Cystathionine beta-synthase, core domain containing protein. (Os03t0737000-01);Hypothetical gene. (Os03t0737000-02);Similar to CBS domain containing protein, expressed. (Os03t0737000-03)",3,30206423,30210436,"GO:0050897;GO:0009651;GO:0045454;GO:0005739;GO:0016020;GO:0016021;","cobalt ion binding;response to salt stress;cell redox homeostasis;mitochondrion;membrane;integral component of membrane;","Interacting selectively and non-covalently with a cobalt (Co) ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS04T0629200-01",2.8230147302903503E-3,0.0790195724615619,-1.27770489400877,"OS04G0629200",null,367.950664912842,354.089610613197,119.03601814313,178.770311810353,"no","OS04G0629200","OSJNBa0089N06.13 protein [Source:UniProtKB/TrEMBL;Acc:B7FAN0]","Cupredoxin domain containing protein. (Os04t0629200-01)",4,32008449,32009263,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS05T0127200-02",2.8295942178757504E-3,0.0790195724615619,-0.373401863619842,"OS05G0127200",null,3447.6852760601,3810.58063514551,2884.42427761264,2718.66720630356,"no","OS05G0127200","Phosphoinositide phospholipase C [Source:UniProtKB/TrEMBL;Acc:Q75IL8]","Similar to Phospholipase C (Fragment). (Os05t0127200-01);Similar to Phospholipase C (Fragment). (Os05t0127200-02)",5,1535764,1541563,"GO:0007165;GO:0004871;GO:0004435;GO:0016042;GO:0006629;GO:0008081;GO:0005622;GO:0035556;GO:0016787","signal transduction;signal transducer activity;phosphatidylinositol phospholipase C activity;lipid catabolic process;lipid metabolic process;phosphoric diester hydrolase activity;intracellular;intracellular signal transduction;hydrolase activity","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+). [EC:3.1.4.11, RHEA:23915];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0467500-01",2.8282504238866103E-3,0.0790195724615619,-0.36536666995369704,"OS07G0467500","GRF11",1151.75692895155,1127.11663843445,903.502891807691,865.521837508047,"no","OS07G0467500","Growth-regulating factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX8]","WRC domain containing protein. (Os07t0467500-01)",7,16622696,16625277,"GO:0032502;GO:0005634;GO:0006355;GO:0006351;GO:0005524","developmental process;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;ATP binding","A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. [GOC:isa_complete];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS11T0507200-00",0.00283986287518968,0.0790195724615619,-1.23255811665519,"OS11G0507200",null,1948.76936947577,2421.97359908587,781.53975846432,1078.48319256082,"no","OS11G0507200","Os11g0507200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2T0]","Similar to transferase. (Os11t0507200-00)",11,18093188,18095604,"GO:0016747;GO:0016740","transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0528400-01",0.0028351333141674,0.0790195724615619,0.378077540624819,"OS12G0528400",null,773.723830499817,765.721327519586,990.597372459266,1010.07927250379,"no","OS12G0528400","Os12g0528400 protein [Source:UniProtKB/TrEMBL;Acc:C7JA70]","Similar to Glutathione synthetase. (Os12t0528400-01);Similar to Glutathione synthetase (Fragment). (Os12t0528400-02)",12,20838521,20843235,"GO:0005829;GO:0004363;GO:0006750;GO:0016874;GO:0005524;GO:0043295;GO:0006520","cytosol;glutathione synthase activity;glutathione biosynthetic process;ligase activity;ATP binding;glutathione binding;cellular amino acid metabolic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the reaction: L-gamma-glutamyl-L-cysteine + ATP + glycine = ADP + glutathione + 2 H(+) + phosphate. [EC:6.3.2.3, RHEA:13560];The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, GOC:al, GOC:pde, ISBN:0198506732];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with glutathione; a tripeptide composed of the three amino acids cysteine, glutamic acid and glycine. [GOC:bf, ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732]"]
["OS12T0538900-01",0.00283956698803793,0.0790195724615619,0.6054277325319051,"OS12G0538900",null,288.175130776271,264.394380236712,438.134560165449,402.561139633534,"no","OS12G0538900","Os12g0538900 protein [Source:UniProtKB/TrEMBL;Acc:Q2QP84]","Armadillo-type fold domain containing protein. (Os12t0538900-01);Similar to predicted protein. (Os12t0538900-02)",12,21493825,21500839,"GO:0008565;GO:0005783;GO:0061025;GO:0006886;GO:0006888;GO:0000139;GO:0048280;GO:0005737;GO:0005795;GO:0048211;GO:0045056;GO:0012507;GO:0016020","protein transporter activity;endoplasmic reticulum;membrane fusion;intracellular protein transport;ER to Golgi vesicle-mediated transport;Golgi membrane;vesicle fusion with Golgi apparatus;cytoplasm;Golgi stack;Golgi vesicle docking;transcytosis;ER to Golgi transport vesicle membrane;membrane","Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The membrane organization process that joins two lipid bilayers to form a single membrane. [GOC:dph, GOC:tb];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:0716731363];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi. [GOC:jid];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack. [GOC:mah, ISBN:0815316194];The initial attachment of a Golgi transport vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the Golgi vesicle and the target membrane. [GOC:jid, ISBN:0716731363, PMID:10219233];The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side. [ISBN:0716731363];The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi. [GOC:ai, GOC:ascb_2009, GOC:dph, GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0634200-01",0.00284525743734597,0.0790976389679654,0.599588566154173,"OS11G0634200",null,645.187730996756,560.984993558699,856.669048603837,971.025628084649,"no","OS11G0634200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R0S3]","Conserved hypothetical protein. (Os11t0634200-01)",11,24950810,24952652]
["OS03T0243600-01",0.00284791979531532,0.0790996778058852,-0.36549436831158705,"OS03G0243600",null,1201.70037100344,1141.5272621222,924.968403276125,893.851559051764,"no","OS03G0243600","Acyl CoA binding protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10P83]","Acyl-CoA-binding protein , Stress response (Os03t0243600-01)",3,7591870,7597405,"GO:0000062","fatty-acyl-CoA binding","Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group. [GOC:jl, ISBN:0198506732]"]
["OS03T0368000-00",2.8520709157086E-3,0.07914302508331429,-1.5749750512837801,"OS03G0368000",null,1295.17804724395,1419.06114379761,344.328195701328,566.703284715615,"no","OS03G0368000","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5U1Q1]","Similar to Peroxidase 1. (Os03t0368000-00)",3,14436127,14437395,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0667600-01",0.0028654209534349,0.0794413257435056,-0.972672422528091,"OS01G0667600",null,237.105250539629,180.901086703014,100.135927450226,112.863919250367,"no","OS01G0667600","Os01g0667600 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZ83]","Similar to GTP-binding protein. (Os01t0667600-01)",1,27301548,27302922,"GO:0005768;GO:0005525;GO:0003924","endosome;GTP binding;GTPase activity","A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS01T0232500-01",0.00287029387851332,0.0794448472454222,0.574198162130331,"OS01G0232500",null,381.59705567964,354.888318779615,569.609207548651,526.906852832195,"no","OS01G0232500","Os01g0232500 protein [Source:UniProtKB/TrEMBL;Acc:Q5NAY5]","Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os01t0232500-01);Similar to PFU3/UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase. (Os01t0232500-02)",1,7340717,7345302,"GO:0031625;GO:0061630;GO:0005737;GO:0016567;GO:0006886;GO:0005622","ubiquitin protein ligase binding;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;intracellular protein transport;intracellular","Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS01T0263300-01",0.00287957239807049,0.0794448472454222,-0.8519340224852711,"OS01G0263300",null,18072.9877299834,19200.682183926,8969.58679403921,11681.5736000086,"no","OS01G0263300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q9LI45]","Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a). (Os01t0263300-01)",1,8917756,8919968,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS05T0148800-00",2.8811498673712997E-3,0.0794448472454222,1.43833205111325,"OS05G0148800",null,26.50060190508,25.7332565852614,75.1292901395164,66.4283125852677,"no","OS05G0148800","Os05g0148800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WHX7]","Hypothetical conserved gene. (Os05t0148800-00)",5,2793637,2794738]
["OS08T0138600-01",2.8735860835388803E-3,0.0794448472454222,-0.638172671667943,"OS08G0138600",null,312.910953263829,357.177601403428,212.703704550839,217.845789801687,"no","OS08G0138600","Pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G50390) UniProtKB/Swiss-Prot;Acc:Q9FK33]","Pentatricopeptide repeat domain containing protein. (Os08t0138600-01)",8,2154469,2158989,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0422600-00",2.8784698404059803E-3,0.0794448472454222,0.360393362073886,"OS08G0422600",null,1198.71281731072,1138.31530633505,1446.81869700101,1553.40164222189,"no","OS08G0422600","Os08g0422600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPV6]","Conserved hypothetical protein. (Os08t0422600-00)",8,20249213,20254594]
["OS11T0489250-00",0.00288098414356488,0.0794448472454222,-0.763684538326541,"OS11G0489250",null,1445.30205774629,1213.58038056093,719.094634192515,846.960985462164,"no","OS11G0489250","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R447]","Similar to Cytochrome P450 family protein, expressed. (Os11t0489250-00)",11,17234743,17237925,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0552000-01",2.8989625051448202E-3,0.0795056641491898,0.6091056190179971,"OS11G0552000",null,222.197354434902,207.924713208912,327.836902426981,328.234015127205,"no","OS11G0552000","NA","Similar to Tyrosine/nicotianamine aminotransferases family protein. (Os11t0552000-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0734466-01",2.8910484045919704E-3,0.0795056641491898,-0.32723582569132,"OS01G0734466",null,2331.52129268239,2478.20988044477,1867.76180687851,1965.89299075375,"no","OS01G0734466","Os01g0734466 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7W2]","Similar to NAD(P)H oxidase (Fragment). (Os01t0734466-01)",1,30630841,30634318,"GO:0055114;GO:0016491;GO:0016020;GO:0016021","oxidation-reduction process;oxidoreductase activity;membrane;integral component of membrane","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0747400-01",2.8912439475453104E-3,0.0795056641491898,-0.62151126310593,"OS01G0747400",null,402.605298173331,382.91085798869,276.124533889392,234.452867948004,"no","OS01G0747400","Os01g0747400 protein [Source:UniProtKB/TrEMBL;Acc:Q94J41]","Protein kinase, core domain containing protein. (Os01t0747400-01)",1,31275242,31279385,"GO:0004871;GO:0004672;GO:0006468;GO:0035556;GO:0005737;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular signal transduction;cytoplasm;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS02T0228900-01",2.8957043240410304E-3,0.0795056641491898,0.411468344699745,"OS02G0228900","IAA7",593.812724330012,606.364774626203,820.383105305381,775.899548407092,"no","OS02G0228900","Auxin-responsive protein IAA7 [Source:UniProtKB/Swiss-Prot;Acc:Q6H543]","Similar to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18). (Os02t0228900-01)",2,7245057,7248588,"GO:0009733;GO:0005634;GO:0009734;GO:0006355;GO:0006351","response to auxin;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0828600-00",0.00289896929373519,0.0795056641491898,5.75677375052096,"OS03G0828600",null,0,1.02933026341046,21.4655114684333,34.1910432424172,"no","OS03G0828600","Os03g0828600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KIB8]","Similar to ATCHX19 (CATION/H+ EXCHANGER 19); monovalent cation:proton antiporter/ sodium:hydrogen antiporter. (Os03t0828600-00)",3,34805711,34807600,"GO:0012505;GO:0006885;GO:1902600;GO:0015299;GO:0006812;GO:0055085;GO:0016021;GO:0016020;GO:0015672","endomembrane system;regulation of pH;hydrogen ion transmembrane transport;solute:proton antiporter activity;cation transport;transmembrane transport;integral component of membrane;membrane;monovalent inorganic cation transport","A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. [GOC:lh];Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. [GOC:dph, GOC:go_curators, GOC:tb];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). [GOC:ai];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of inorganic cations with a valency of one into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. [GOC:ai]"]
["OS04T0620500-01",0.00289878572884273,0.0795056641491898,-0.42570190115590906,"OS04G0620500",null,832.730452171168,914.045273908485,643.965344052998,656.46803025441,"no","OS04G0620500","Os04g0620500 protein [Source:UniProtKB/TrEMBL;Acc:Q0JA16]","Similar to H0714H04.7 protein. (Os04t0620500-01)",4,31541180,31541869]
["OS01T0767000-01",2.9044976799170504E-3,0.0795612689954006,-0.40572403679343605,"OS01G0767000",null,1110.98677217451,1205.34573845364,911.308532341667,837.19211596433,"no","OS01G0767000","Os01g0767000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8N9]","Similar to Nuclear matrix constituent-like protein (Fragment). (Os01t0767000-01)",1,32327830,32328818]
["OS03T0255500-01",0.0029074780632921,0.0795612689954006,0.6750666612617131,"OS03G0255500",null,479.392027667706,391.968964306702,721.194827623184,670.081603956328,"no","OS03G0255500","Os03g0255500 protein [Source:UniProtKB/TrEMBL;Acc:Q10NX2]","Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49) (Fragment). (Os03t0255500-01);Similar to Phosphoenolpyruvate carboxykinase. (Os03t0255500-02)",3,8218898,8224127,"GO:0006094;GO:0017076;GO:0004612;GO:0004611;GO:0005524;GO:0005829;GO:0016310;GO:0016301","gluconeogenesis;purine nucleotide binding;phosphoenolpyruvate carboxykinase (ATP) activity;phosphoenolpyruvate carboxykinase activity;ATP binding;cytosol;phosphorylation;kinase activity","The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY];Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate. [GOC:ai];Catalysis of the reaction: ATP + oxaloacetate = ADP + CO(2) + H(+) + phosphoenolpyruvate. [EC:4.1.1.49, RHEA:18620];Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products. [EC:4.1.1.-];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS04T0231200-01",0.0029088091603778,0.0795612689954006,1.05880128382378,"OS04G0231200",null,109.060169378599,132.783603979949,218.557934951321,285.250989336738,"no","OS04G0231200","Os04g0231200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KIP9]","Hypothetical gene. (Os04t0231200-01)",4,8764872,8767208]
["OS03T0245700-03",2.91974631062281E-3,0.0796465082876321,-1.32691618845172,"OS03G0245700",null,531.751521876324,738.974482867382,221.369837745156,285.166193334834,"no","OS03G0245700","3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:Q10P61]","Thiolase-like, subgroup domain containing protein. (Os03t0245700-02);Similar to senescence-associated protein 15. (Os03t0245700-03)",3,7686713,7688842,"GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0016746;GO:0016740","fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;integral component of membrane;transferase activity, transferring acyl groups;transferase activity","The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0329200-02",0.00291725964746517,0.0796465082876321,-1.34245282862028,"OS06G0329200",null,155.758482459555,181.065720209915,58.650715678901,74.1757819199951,"no","OS06G0329200","Os06g0329200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WW13]","Conserved hypothetical protein. (Os06t0329200-01);Hypothetical gene. (Os06t0329200-02)",6,12991051,13000888,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0398700-01",2.9182595082367303E-3,0.0796465082876321,0.308167944808995,"OS08G0398700",null,2086.46646460809,2145.28315953159,2570.95762948217,2668.5172126914,"no","OS08G0398700","Aminopeptidase M1-B [Source:UniProtKB/Swiss-Prot;Acc:Q0J5V5]","Peptidase M1, membrane alanine aminopeptidase family protein. (Os08t0398700-01);Similar to APM1 (AMINOPEPTIDASE M1). (Os08t0398700-02)",8,19021817,19031571,"GO:0006508;GO:0043171;GO:0070006;GO:0042277;GO:0043231;GO:0031090;GO:0005737;GO:0008270;GO:0004177;GO:0005783;GO:0008237;GO:0046872;GO:0016787;GO:0008233;GO:0016020","proteolysis;peptide catabolic process;metalloaminopeptidase activity;peptide binding;intracellular membrane-bounded organelle;organelle membrane;cytoplasm;zinc ion binding;aminopeptidase activity;endoplasmic reticulum;metallopeptidase activity;metal ion binding;hydrolase activity;peptidase activity;membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. [GOC:jl];Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#AMINOPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds. [GOC:jl];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle. [GOC:dos, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0652000-01",0.00292482373419769,0.0797138400777947,-0.97958632757591,"OS02G0652000",null,128.5940253507,132.10365238428,65.5216792829206,66.6846644336497,"no","OS02G0652000","Cyclin-like [Source:UniProtKB/TrEMBL;Acc:Q6H3X9]","PREG-like protein. (Os02t0652000-01)",2,26275400,26277684,"GO:0000079;GO:0019901","regulation of cyclin-dependent protein serine/threonine kinase activity;protein kinase binding","Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. [GOC:go_curators, GOC:pr];Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. [GOC:jl]"]
["OS03T0798400-01",2.93195600989399E-3,0.07983700536032201,-0.7515267693519431,"OS03G0798400",null,207.927799562935,207.924713208912,120.987428276624,126.018416522052,"no","OS03G0798400","PRA1 family protein E [Source:Projected from Arabidopsis thaliana (AT1G08770) UniProtKB/Swiss-Prot;Acc:Q9FRR1]","Prenylated rab acceptor PRA1 family protein. (Os03t0798400-01)",3,33281634,33282656,"GO:0006810;GO:0016020;GO:0016021","transport;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0700500-01",0.0029440415390448,0.0799693820430219,-3.74766034993094,"OS01G0700500",null,63.0379735260508,76.6210914141561,4.87852533373483,5.51854426287532,"no","OS01G0700500","Os01g0700500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDK7]","Similar to Flavonoid 3-monooxygenase. (Os01t0700500-01);Similar to Flavonoid 3-monooxygenase. (Os01t0700500-02)",1,28991472,28993283,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0044550;GO:0016020;GO:0016709;GO:0016021","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;integral component of membrane","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0775200-03",0.00294728738480108,0.0799693820430219,-0.392644452263866,"OS01G0775200",null,2990.64670415634,3377.23209196426,2401.90691987095,2448.71059762357,"no","OS01G0775200","Os01g0775200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8R6]","Conserved hypothetical protein. (Os01t0775200-01);Conserved hypothetical protein. (Os01t0775200-02);Conserved hypothetical protein. (Os01t0775200-03)",1,32768618,32773224]
["OS01T0880300-02",0.00294119060511069,0.0799693820430219,0.867027812541807,"OS01G0880300",null,194.677498610395,156.458200038389,293.642057560943,346.794867173089,"no","OS01G0880300","Pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q8LJK2]","Similar to Pectin methylesterase-like protein. (Os01t0880300-02)",1,38206952,38211683,"GO:0071944;GO:0046910;GO:0030599;GO:0045490;GO:0042545;GO:0045330;GO:0005618;GO:0043086;GO:0004857;GO:0016787;GO:0005576;GO:0071555","cell periphery;pectinesterase inhibitor activity;pectinesterase activity;pectin catabolic process;cell wall modification;aspartyl esterase activity;cell wall;negative regulation of catalytic activity;enzyme inhibitor activity;hydrolase activity;extracellular region;cell wall organization","The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah];Stops, prevents or reduces the activity of any pectinesterase enzyme. [GOC:ai, PMID:10880981];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl];Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. [GOC:mah, UniProtKB-KW:KW-0063];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS06T0716100-01",2.9466270663866504E-3,0.0799693820430219,0.7937674104449961,"OS06G0716100",null,125.368232089417,147.194227667695,247.82908695373,224.68399845017,"no","OS06G0716100","Os06g0716100 protein [Source:UniProtKB/TrEMBL;Acc:Q0D9H0]","Similar to Chaperone protein dnaJ. (Os06t0716100-01)",6,30417661,30418845]
["OS03T0123600-02",2.9683804949337997E-3,0.0804702403560048,0.7926220040307971,"OS03G0123600",null,1172.68377293689,1056.31540815392,1894.93351138718,1966.18300406395,"no","OS03G0123600","Os03g0123600 protein [Source:UniProtKB/TrEMBL;Acc:Q10SG5]","Protein of unknown function Cys-rich family protein. (Os03t0123600-01);Protein of unknown function Cys-rich family protein. (Os03t0123600-02)",3,1346049,1349514,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0299200-01",2.9718637866426104E-3,0.08049324681693709,-0.37226716160626,"OS09G0299200",null,989.695555762796,1049.91686867867,790.321104065043,785.417107625812,"no","OS09G0299200","Os09g0299200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKY3]","MYB-type transcription factor, Reguration of high-affinity potassium transporter, Salt tolerance (Os09t0299200-01)",9,7329560,7333289,"GO:0005634;GO:0006355;GO:0006351;GO:0003677","nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS07T0211200-01",2.9775591949904204E-3,0.0805760748674466,-0.43576315846263103,"OS07G0211200",null,826.614928654611,797.730954143103,567.860348846735,633.02274345961,"no","OS07G0211200","Os07g0211200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3W4]","Similar to REF4 (REDUCED EPIDERMAL FLUORESCENCE 4). (Os07t0211200-01)",7,6042977,6044306]
["OS09T0361500-01",2.9884716243158103E-3,0.0806606607760968,-0.627152541182257,"OS09G0361500",null,417.894106964723,376.734876408227,276.124533889392,238.360415747137,"no","OS09G0361500","Os09g0361500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQN3]","Isochorismate synthase domain containing protein. (Os09t0361500-01)",9,11810070,11815321,"GO:0009058;GO:0008909","biosynthetic process;isochorismate synthase activity","The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of the reaction: chorismate = isochorismate. [EC:5.4.4.2, RHEA:18988]"]
["OS09T0393200-01",2.98860526311016E-3,0.0806606607760968,0.616602834636469,"OS09G0393200",null,229.332131870885,236.745960584405,381.500681098064,333.118449876122,"no","OS09G0393200","Os09g0393200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMK7]","Similar to transcription factor jumonji (jmjC) domain-containing protein. (Os09t0393200-01)",9,13595422,13601889,"GO:0033169;GO:0031490;GO:0032454;GO:0000976;GO:0006355;GO:0000785;GO:0005634;GO:0046872;GO:0003677","histone H3-K9 demethylation;chromatin DNA binding;histone demethylase activity (H3-K9 specific);transcription regulatory region sequence-specific DNA binding;regulation of transcription, DNA-templated;chromatin;nucleus;metal ion binding;DNA binding","The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone. [GOC:mah];Interacting selectively and non-covalently with DNA that is assembled into chromatin. [GOC:mah];Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein. [PMID:16362057];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. [GOC:elh, PMID:20404130];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS10T0500600-02",2.9853804679502403E-3,0.0806606607760968,-0.675422271799599,"OS10G0500600",null,623.7537933335,730.642066732419,393.647207507963,454.406298724455,"no","OS10G0500600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q337G4]","Zinc finger, C2H2-like domain containing protein. (Os10t0500600-01);Similar to predicted protein. (Os10t0500600-02)",10,19092675,19095658,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS09T0132600-01",0.0029969844700428,0.0807441530235869,0.34777016730952404,"OS09G0132600",null,1200.62081889931,1159.24848995533,1553.69391890312,1449.45732154804,"no","OS09G0132600","Os09g0132600 protein [Source:UniProtKB/TrEMBL;Acc:Q6K456]","Similar to DAG protein. (Os09t0132600-01)",9,2489928,2493529]
["OS10T0330000-01",2.9949257220948503E-3,0.0807441530235869,-0.616795767876196,"OS10G0330000",null,2088.45128090419,1847.64782282177,1185.48165609756,1381.31814699366,"no","OS10G0330000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7G649]","Conserved hypothetical protein. (Os10t0330000-01)",10,9315531,9316279]
["OS04T0398300-01",3.0005531254157104E-3,0.0807623545068899,0.31679439302412804,"OS04G0398300",null,1666.64021412391,1673.3076959716,2101.93944475148,2058.16570954609,"no","OS04G0398300","Os04g0398300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDK3]","Similar to Glycyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS). (Os04t0398300-01);Similar to H0209H04.1 protein. (Os04t0398300-02)",4,19679498,19681906,"GO:0004820;GO:0005739;GO:0006426;GO:0005737;GO:0000166;GO:0005524;GO:0070150","glycine-tRNA ligase activity;mitochondrion;glycyl-tRNA aminoacylation;cytoplasm;nucleotide binding;ATP binding;mitochondrial glycyl-tRNA aminoacylation","Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). [EC:6.1.1.14];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The process of coupling glycine to glycyl-tRNA in a mitochondrion, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mah, GOC:mcc]"]
["OS09T0407700-01",3.0045830946209E-3,0.0807623545068899,-0.45665455570268104,"OS09G0407700",null,867.385085431657,925.367906806,612.742781917095,693.589734346178,"no","OS09G0407700","Os09g0407700 protein [Source:UniProtKB/TrEMBL;Acc:A3BYP4]","Haloacid dehalogenase-like hydrolase domain containing protein. (Os09t0407700-01)",9,14387547,14389885,"GO:0016311;GO:0016787;GO:0008152;GO:0016020;GO:0016021;GO:0050308;GO:0005829;GO:0005886","dephosphorylation;hydrolase activity;metabolic process;membrane;integral component of membrane;sugar-phosphatase activity;cytosol;plasma membrane","The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: sugar phosphate + H2O = sugar + phosphate. [EC:3.1.3.23, MetaCyc:SUGAR-PHOSPHATASE-RXN];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS12T0639700-01",3.0055903729488704E-3,0.0807623545068899,-0.37965102025219505,"OS12G0639700",null,1064.78772836411,1162.99358282319,864.474689137813,847.850365739138,"no","OS12G0639700","BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLJ7]","Glycosyl transferase, family 14 protein. (Os12t0639700-01)",12,27436312,27438506,"GO:0008375;GO:0016020;GO:0016021","acetylglucosaminyltransferase activity;membrane;integral component of membrane","Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0783500-01",3.01292376187225E-3,0.0808858231560427,0.520475142941724,"OS01G0783500",null,1413.04888761607,1431.53500621938,1874.13648132725,2206.21313901736,"no","OS01G0783500","Os01g0783500 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZAV7]","Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os01t0783500-01)",1,33198608,33201733,"GO:0006950","response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS01T0949900-01",3.0173163832995903E-3,0.0808858231560427,1.30203568602609,"OS01G0949900",null,55.0397116490123,36.026559219366,112.206082675901,112.341999225085,"no","OS01G0949900","Os01g0949900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCX6]","Conserved hypothetical protein. (Os01t0949900-01)",1,41846413,41847329]
["OS03T0287100-01",3.0181277297030903E-3,0.0808858231560427,0.60176709869406,"OS03G0287100",null,245.640194581703,243.951272428278,346.375298695173,396.61610161204,"no","OS03G0287100","Os03g0287100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWB0]","Similar to Phosphatidylinositol transfer protein, expressed. (Os03t0287100-01)",3,9904631,9907008,"GO:0005622;GO:0006810","intracellular;transport","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS07T0572000-01",0.00302112604392197,0.08089521726021401,-0.5241472377996941,"OS07G0572000",null,431.144407917263,416.878756681235,288.808699757102,300.881180533271,"no","OS07G0572000","COMPASS-like H3K4 histone methylase component WDR5B [Source:Projected from Arabidopsis thaliana (AT4G02730) UniProtKB/Swiss-Prot;Acc:Q9SY00]","WD40/YVTN repeat-like domain containing protein. (Os07t0572000-01)",7,23091890,23094419]
["OS03T0648400-04",0.00304636912541503,0.0814997106126794,-0.533666071800471,"OS03G0648400",null,1739.37120092123,1660.73064710235,1271.00091824779,1077.77957271795,"no","OS03G0648400","DNAJ-like protein [Source:UniProtKB/TrEMBL;Acc:Q84PD0]","Similar to DnaJ protein. (Os03t0648400-01);Similar to DnaJ protein homolog (DNAJ-1). (Os03t0648400-02);Similar to DnaJ protein homolog (DNAJ-1). (Os03t0648400-03);Non-protein coding transcript. (Os03t0648400-04)",3,25127262,25130981,"GO:0009408;GO:0031072;GO:0006457;GO:0051082;GO:0046872;GO:0005524","response to heat;heat shock protein binding;protein folding;unfolded protein binding;metal ion binding;ATP binding","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. [GOC:mah, GOC:vw];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0851900-01",3.07135039163484E-3,0.0815964323175892,0.8427390994515821,"OS03G0851900",null,245.179586778392,226.983844282756,473.035027009657,373.767402779779,"no","OS03G0851900","AFG1-like ATPase family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10AH7]","ATPase, AFG1-like domain containing protein. (Os03t0851900-01);Similar to ATPase. (Os03t0851900-02)",3,35868698,35875491,"GO:0005524;GO:0019538;GO:0016818;GO:0016746;GO:0008026;GO:0006260;GO:0050660;GO:0030163;GO:0005623;GO:0045454;GO:0090305;GO:0006139;GO:0008408;GO:0055114;GO:0016491;GO:0003676;GO:0008375;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0004148","ATP binding;protein metabolic process;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;transferase activity, transferring acyl groups;ATP-dependent helicase activity;DNA replication;flavin adenine dinucleotide binding;protein catabolic process;cell;cell redox homeostasis;nucleic acid phosphodiester bond hydrolysis;nucleobase-containing compound metabolic process;3'-5' exonuclease activity;oxidation-reduction process;oxidoreductase activity;nucleic acid binding;acetylglucosaminyltransferase activity;metabolic process;catalytic activity;membrane;integral component of membrane;dihydrolipoyl dehydrogenase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma];Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. [EC:3.6.1.3, GOC:jl];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+. [EC:1.8.1.4]"]
["OS03T0854100-02",3.0621792198730403E-3,0.0815964323175892,-0.6049549040951381,"OS03G0854100",null,2568.78080595728,3008.21906725741,1733.3855839791,1933.44683591561,"no","OS03G0854100","Os03g0854100 protein [Source:UniProtKB/TrEMBL;Acc:Q84T71]","Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment). (Os03t0854100-01);Similar to predicted protein. (Os03t0854100-02)",3,35975476,35978914,"GO:0005096;GO:0043547;GO:0046872","GTPase activator activity;positive regulation of GTPase activity;metal ion binding","Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS04T0685700-01",3.0596350703005902E-3,0.0815964323175892,-0.799244853872324,"OS04G0685700",null,175.311674141299,178.074135570009,98.5462117414437,104.526903626818,"no","OS04G0685700","Os04g0685700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WGL9]","Similar to H0723C07.4 protein. (Os04t0685700-01)",4,35031210,35032643]
["OS05T0458400-01",0.00307010067994073,0.0815964323175892,0.291746583568375,"OS05G0458400","FTSH8",2480.32735656897,2551.1808085561,3090.49564483197,3068.68092591151,"no","OS05G0458400","ATP-dependent zinc metalloprotease FTSH 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0DHL4]","Similar to AAA-metalloprotease FtsH. (Os05t0458400-01)",5,22518318,22524115,"GO:0005739;GO:0008237;GO:0046872;GO:0004222;GO:0006508;GO:0016787;GO:0008233;GO:0016021;GO:0005524;GO:0000166;GO:0008270;GO:0016020","mitochondrion;metallopeptidase activity;metal ion binding;metalloendopeptidase activity;proteolysis;hydrolase activity;peptidase activity;integral component of membrane;ATP binding;nucleotide binding;zinc ion binding;membrane","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0434100-01",0.00306423237952664,0.0815964323175892,-0.9134743105613561,"OS08G0434100",null,2230.02602138777,2847.12750859332,1243.83229146952,1451.65400737806,"no","OS08G0434100","Os08g0434100 protein [Source:UniProtKB/TrEMBL;Acc:Q9FEG7]","Similar to S-like ribonuclease (RNase PD2) (Fragment). (Os08t0434100-01)",8,21050708,21052845,"GO:0090502;GO:0033897;GO:0016787;GO:0003723","RNA phosphodiester bond hydrolysis, endonucleolytic;ribonuclease T2 activity;hydrolase activity;RNA binding","The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. [EC:3.1.27.1];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS09T0536400-01",0.00306074886474798,0.0815964323175892,0.6614625098469761,"OS09G0536400",null,259.909749453669,235.716630320994,425.407409101678,358.517510570489,"no","OS09G0536400","Os09g0536400 protein [Source:UniProtKB/TrEMBL;Acc:Q69JY6]","Similar to Thaumatin-like protein 1 precursor. (Os09t0536400-01)",9,21098267,21101192,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0468500-01",0.00307071806144811,0.0815964323175892,-0.505664283614727,"OS10G0468500",null,658.480514945894,747.190607645093,518.394448248032,471.670319095893,"no","OS10G0468500","Leucine Rich Repeat family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q337M0]","Serine/threonine protein kinase-related domain containing protein. (Os10t0468500-01);Hypothetical conserved gene. (Os10t0468500-02)",10,17312261,17316877,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0000166","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;nucleotide binding","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS11T0166800-01",0.0030538949202622,0.0815964323175892,-0.42211600217014505,"OS11G0166800",null,692.037862219214,677.276084361219,521.875880808568,500.083073367386,"no","OS11G0166800","Os11g0166800 protein [Source:UniProtKB/TrEMBL;Acc:Q0IUD4]","Transcription elongation factor, TFIIS/CRSP70, N-terminal domain containing protein. (Os11t0166800-01)",11,3233723,3236100,"GO:0070449;GO:0006368;GO:0006414;GO:0003746;GO:0005634","elongin complex;transcription elongation from RNA polymerase II promoter;translational elongation;translation elongation factor activity;nucleus","A transcription elongation factor complex that suppresses RNA polymerase II pausing, and may act by promoting proper alignment of the 3'-end of nascent transcripts with the polymerase catalytic site. Consists of a transcriptionally active Elongin A subunit (abut 100 kDa)and two smaller Elongin B (about 18 kDa) and Elongin C (about 15 kDa)subunits. [PMID:12676794];The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS05T0280500-01",0.00307452147298867,0.08160971332993029,-0.6690133635441681,"OS05G0280500",null,419.446477663649,454.104096695641,248.804792020477,300.603188655778,"no","OS05G0280500","Os05g0280500 protein [Source:UniProtKB/TrEMBL;Acc:Q75IG9]","Phospholipid/glycerol acyltransferase domain containing protein. (Os05t0280500-01)",5,11753281,11756377,"GO:0016311;GO:0010143;GO:0090447;GO:0016791;GO:0016020;GO:0016746;GO:0008152;GO:0016021;GO:0016740","dephosphorylation;cutin biosynthetic process;glycerol-3-phosphate 2-O-acyltransferase activity;phosphatase activity;membrane;transferase activity, transferring acyl groups;metabolic process;integral component of membrane;transferase activity","The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = CoA + a 2-acyl-sn-glycerol 3-phosphate. [EC:2.3.1.198];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0582900-01",3.0799644287598602E-3,0.0816832232877355,-1.83200182870207,"OS02G0582900",null,5733.30329677212,5290.75755392974,1097.66820009034,1998.71069925673,"no","OS02G0582900","Os02g0582900 protein [Source:UniProtKB/TrEMBL;Acc:Q6EPT1]","Conserved hypothetical protein. (Os02t0582900-01)",2,22477790,22478946]
["OS03T0288000-01",0.0030842430941486,0.081725754564118,-0.669900732507221,"OS03G0288000","MT1B",7620.8831514017,6338.96902335542,4154.77156351353,4619.69260512931,"no","OS03G0288000","Metallothionein-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q10N03]","Similar to Metallothionein. (Os03t0288000-01);Similar to Metallothionein. (Os03t0288000-02)",3,9957175,9958291,"GO:0008270;GO:0046872;GO:0046870;GO:0016151;GO:0005507","zinc ion binding;metal ion binding;cadmium ion binding;nickel cation binding;copper ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with cadmium (Cd) ions. [GOC:ai];Interacting selectively and non-covalently with nickel (Ni) cations. [GOC:ai];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai]"]
["OS03T0299200-01",3.1034996663772403E-3,0.0820467236913283,-0.900127539174411,"OS03G0299200",null,353.507663675668,269.686584553797,174.108876763092,159.823129829653,"no","OS03G0299200","Os03g0299200 protein [Source:UniProtKB/TrEMBL;Acc:Q10MQ8]","Similar to Alcohol dehydrogenase (Fragment). (Os03t0299200-01)",3,10502015,10503291]
["OS04T0531900-01",3.1043548370047803E-3,0.0820467236913283,1.05493677173594,"OS04G0531900",null,97.6489453186351,69.4979357427054,168.955676517382,178.313221527956,"no","OS04G0531900","OSJNBa0081C01.20 protein [Source:UniProtKB/TrEMBL;Acc:Q7X8W6]","Short-chain dehydrogenase/reductase SDR domain containing protein. (Os04t0531900-01)",4,26590627,26592402]
["OS06T0347700-00",3.1044125617692903E-3,0.0820467236913283,-1.38511597214711,"OS06G0347700",null,77.4632978763877,62.7891460680378,26.3440368021681,27.3528345939338,"no","OS06G0347700","Os06g0347700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WWA7]","Transcription factor, MADS-box domain containing protein. (Os06t0347700-00)",6,13996413,14009042,"GO:0045944;GO:0000977;GO:0046983;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","positive regulation of transcription from RNA polymerase II promoter;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0402800-01",0.00311073019555171,0.08210084048739359,-0.346129116228416,"OS03G0402800","TIFY10A",1371.41717474332,1340.45488065123,1046.11301216308,1087.29513641259,"no","OS03G0402800","Protein TIFY 10a [Source:UniProtKB/Swiss-Prot;Acc:Q84R94]","Tify domain containing protein. (Os03t0402800-01);Similar to ZIM motif family protein, expressed. (Os03t0402800-02)",3,16407695,16410007,"GO:2000022;GO:1903507;GO:0031347;GO:0009611;GO:0003714;GO:0005515;GO:0005634;GO:0006355;GO:0006351","regulation of jasmonic acid mediated signaling pathway;negative regulation of nucleic acid-templated transcription;regulation of defense response;response to wounding;transcription corepressor activity;protein binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of jasmonic acid mediated signaling pathway. [GOC:obol];Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription. [GO_REF:0000058, GOC:pr, GOC:TermGenie, GOC:txnOH, GOC:vw];Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS07T0669100-01",3.1118346846164503E-3,0.08210084048739359,0.47739350358957205,"OS07G0669100",null,2353.7981234123,2312.47762130241,3004.4396167179,3492.07116188573,"no","OS07G0669100","Xylose isomerase [Source:Projected from Arabidopsis thaliana (AT5G57655) UniProtKB/Swiss-Prot;Acc:Q9FKK7]","Similar to Xylose isomerase (EC 5.3.1.5). (Os07t0669100-01);Similar to Xylose isomerase. (Os07t0669100-02)",7,28272363,28276606,"GO:0042732;GO:0009045;GO:0016042;GO:0006629;GO:0006098;GO:0016853;GO:0005975;GO:0046872;GO:0016787;GO:0008152;GO:0005737;GO:0016020","D-xylose metabolic process;xylose isomerase activity;lipid catabolic process;lipid metabolic process;pentose-phosphate shunt;isomerase activity;carbohydrate metabolic process;metal ion binding;hydrolase activity;metabolic process;cytoplasm;membrane","The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide. [ISBN:0198506732];Catalysis of the reaction: D-xylose = D-xylulose. [EC:5.3.1.5];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0711600-02",0.00312048601083086,0.08225805746583639,-0.479045295679959,"OS03G0711600",null,795.582570662778,741.318077763926,581.237801475069,521.415013560336,"no","OS03G0711600","Os03g0711600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W2V4]","Similar to DNA binding protein (Fragment). (Os03t0711600-01);Similar to AT hook motif family protein, expressed. (Os03t0711600-02)",3,28740907,28742402,"GO:0006334;GO:0000786;GO:0005634;GO:0003677;GO:0005694","nucleosome assembly;nucleosome;nucleus;DNA binding;chromosome","The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684]"]
["OS01T0505400-02",3.1355874058551104E-3,0.0825137523029159,0.344520767250217,"OS01G0505400",null,1160.47854270844,1201.18774978682,1454.30481133478,1544.37168819815,"no","OS01G0505400","Os01g0505400 protein [Source:UniProtKB/TrEMBL;Acc:B7EAG8]","Similar to 2-hydroxyphytanoyl-CoA lyase. (Os01t0505400-01);Similar to 2-hydroxyphytanoyl-CoA lyase. (Os01t0505400-02)",1,17560761,17564889,"GO:0016831;GO:0030976;GO:0000287;GO:0046872;GO:0016829;GO:0003824;GO:0009082;GO:0003984;GO:0008652;GO:0050660;GO:0009097;GO:0016740;GO:0009099;GO:0005829","carboxy-lyase activity;thiamine pyrophosphate binding;magnesium ion binding;metal ion binding;lyase activity;catalytic activity;branched-chain amino acid biosynthetic process;acetolactate synthase activity;cellular amino acid biosynthetic process;flavin adenine dinucleotide binding;isoleucine biosynthetic process;transferase activity;valine biosynthetic process;cytosol","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [CHEBI:22918, GOC:ai];Catalysis of the reaction: 2 pyruvate = 2-acetolactate + CO2. [EC:2.2.1.6];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid. [GOC:ai];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS07T0681100-04",0.00313450679816525,0.0825137523029159,-0.422668010723153,"OS07G0681100",null,852.910209541125,865.434973595095,662.285567240586,619.674981656723,"no","OS07G0681100","Os07g0681100 protein [Source:UniProtKB/TrEMBL;Acc:Q7XHW7]","Similar to Receptor-like protein kinase. (Os07t0681100-01);Similar to Receptor-like protein kinase. (Os07t0681100-02);Similar to Receptor-like protein kinase. (Os07t0681100-03);Similar to Leucine-rich repeat receptor-like protein kinase (Fragment). (Os07t0681100-04)",7,28863557,28868627,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0016310;GO:0016301;GO:0000166","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;phosphorylation;kinase activity;nucleotide binding","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS03T0820600-02",3.1526641029392204E-3,0.0826782778309004,-0.79611694080432,"OS03G0820600","ADF4",1690.13890333954,2129.03740529789,1042.76814419434,1156.68456406297,"no","OS03G0820600","Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84TB3]","Similar to Actin-depolymerizing factor 3 (ADF 3) (ZmABP3) (ZmADF3). (Os03t0820600-01);Similar to cDNA clone:001-009-H02, full insert sequence. (Os03t0820600-02)",3,34431700,34434224,"GO:0015629;GO:0030042;GO:0003779;GO:0005622;GO:0006952;GO:0005856;GO:0005737","actin cytoskeleton;actin filament depolymerization;actin binding;intracellular;defense response;cytoskeleton;cytoplasm","The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. [GOC:jl, ISBN:0395825172, ISBN:0815316194];Disassembly of actin filaments by the removal of actin monomers from a filament. [GOC:mah];Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. [GOC:clt];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS05T0113500-04",0.00315162749083185,0.0826782778309004,10.794694089823,"OS05G0113500",null,0.0997286630275963,0.10216021343680201,146.608610909407,212.01518755648,"no","OS05G0113500","Os05g0113500 protein [Source:UniProtKB/TrEMBL;Acc:Q75L12]","Similar to BRI1-KD interacting protein 130. (Os05t0113500-03);Similar to BRI1-KD interacting protein 130. (Os05t0113500-04);Similar to BRI1-KD interacting protein 130. (Os05t0113500-05)",5,719134,721868]
["OS10T0548700-02",0.00315230565330348,0.0826782778309004,"Inf","OS10G0548700",null,0,0,21.7228693938665,25.8553466499386,"no","OS10G0548700","Os10g0548700 protein [Source:UniProtKB/TrEMBL;Acc:Q336U5]","Receptor-like cytoplasmic kinase, Various stress responses,  Regulation of resistance to bacterial leaf streak (BLS) (Os10t0548700-01);Hypothetical conserved gene. (Os10t0548700-02)",10,21467611,21472768,"GO:0016567;GO:0004842;GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301","protein ubiquitination;ubiquitin-protein transferase activity;protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS12T0571000-01",3.1509102606165603E-3,0.0826782778309004,1.6048897241659899,"OS12G0571000",null,131.287287430628,176.710368026102,372.651733336196,564.192434005527,"no","OS12G0571000","Metallothionein-like protein 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QNC4]","Metallothionein-like protein type 1. (Os12t0571000-01)",12,23512501,23513406,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0358551-00",3.16334469547955E-3,0.082878262862697,"-Inf","OS01G0358551",null,155.327108691435,25.4258609155461,0,0,"no","OS01G0358551","Os01g0358551 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V2W5]","Conserved hypothetical protein. (Os01t0358551-00)",1,14513995,14515154]
["OS01T0865600-01",3.16735217456587E-3,0.082878262862697,-0.48761885232508806,"OS01G0865600",null,518.800244987912,522.899773812512,387.354911498546,355.586849721139,"no","OS01G0865600","BHLH transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q5N9E6]","Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0865600-01);Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0865600-02)",1,37457525,37463751,"GO:0006355;GO:0005634;GO:0048364;GO:0046983;GO:0003700","regulation of transcription, DNA-templated;nucleus;root development;protein dimerization activity;transcription factor activity, sequence-specific DNA binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH]"]
["OS12T0451300-00",3.1684279596631997E-3,0.082878262862697,-1.00303077273577,"OS12G0451300",null,185.289464663323,171.088387819727,75.072415657507,102.742569272647,"no","OS12G0451300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QRT0]","Hypothetical conserved gene. (Os12t0451300-00)",12,15498809,15499781]
["OS02T0766700-01",3.1759699520848604E-3,0.0830044773106046,0.35419766413694204,"OS02G0766700","BZIP23",818.460897299202,815.229568621081,1037.17448595203,1051.13035796688,"no","OS02G0766700","bZIP transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z312]","bZIP transcription factor, Regulation of ABA signaling and biosynthesis, Drought resistance (Os02t0766700-01)",2,32276662,32281580,"GO:0009414;GO:0009738;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0009651","response to water deprivation;abscisic acid-activated signaling pathway;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;response to salt stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]"]
["OS06T0155300-02",0.0031871738814483,0.0832260995094089,-0.32418395802598504,"OS06G0155300",null,3080.10984421551,3327.40538483202,2582.04084163472,2535.96234063943,"no","OS06G0155300","Os06g0155300 protein [Source:UniProtKB/TrEMBL;Acc:Q5VMB6]","IQ calmodulin-binding region domain containing protein. (Os06t0155300-01);Similar to calmodulin binding protein. (Os06t0155300-02)",6,2855669,2859559,"GO:0017148;GO:0006952;GO:0030598;GO:0016787","negative regulation of translation;defense response;rRNA N-glycosylase activity;hydrolase activity","Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species. [EC:3.2.2.22, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0194600-01",0.0031937347115083,0.0832954605212559,1.33216005977421,"OS03G0194600",null,273.160050406209,221.306006633248,509.318044841917,735.645462655479,"no","OS03G0194600","Membrane protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8H7W6]","Protein of unknown function DUF568, DOMON-like domain containing protein. (Os03t0194600-01)",3,4913314,4914063]
["OS10T0398600-01",3.1952827877360602E-3,0.0832954605212559,-1.18297530223298,"OS10G0398600",null,131.26912829502,117.252831065198,45.3428814419333,64.1166838000799,"no","OS10G0398600","Os10g0398600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUE0]","Similar to cDNA clone:J013004F22, full insert sequence. (Os10t0398600-01)",10,13422377,13423710]
["OS05T0354400-02",3.2045048010651803E-3,0.083464646787846,-1.11476603151057,"OS05G0354400",null,1677.74724708742,2227.84754406778,804.064762686525,999.406262303273,"no","OS05G0354400","Os05g0354400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WL81]","Similar to ESK1 (ESKIMO 1). (Os05t0354400-01);Similar to ESK1 (ESKIMO 1). (Os05t0354400-02)",5,16781887,16786652,"GO:0005794;GO:0071554;GO:0016413;GO:0016020;GO:0016021","Golgi apparatus;cell wall organization or biogenesis;O-acetyltransferase activity;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah];Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0593700-03",0.00321027887735679,0.0834727151157487,0.32097946865390503,"OS02G0593700",null,6162.43181994253,5787.83178468137,7559.38017824297,7368.63037150768,"no","OS02G0593700","Os02g0593700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZH84]","Similar to TA4 protein (Fragment). (Os02t0593700-01);Similar to Ubiquitin-associated protein. (Os02t0593700-02);Similar to Ubiquitin-associated protein. (Os02t0593700-03);Similar to TA4 protein (Fragment). (Os02t0593700-04)",2,22981859,22987590,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0109200-01",0.00320933074993471,0.0834727151157487,0.44758992540366604,"OS08G0109200",null,3011.89533190429,2783.01085481997,3714.27579302473,4188.58628992233,"no","OS08G0109200","Os08g0109200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBM6]","Similar to S-glutathione dehydrogenase/class III alcohol dehydrogenase. (Os08t0109200-01)",8,458533,461304,"GO:0016491;GO:0055114;GO:0008270;GO:0050897","oxidoreductase activity;oxidation-reduction process;zinc ion binding;cobalt ion binding","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with a cobalt (Co) ion. [GOC:ai]"]
["OS05T0400400-01",0.00321355074590906,0.0834867367253518,-0.647442289627236,"OS05G0400400",null,3297.40159443224,3714.51002460237,2045.52620312609,2430.95622222387,"no","OS05G0400400","Os05g0400400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DIC9]","Similar to Ubiquinol-cytochrome c reductase complex 8.0 kDa protein (EC 1.10.2.2). (Os05t0400400-01)",5,19475086,19478332,"GO:0005750;GO:0034551;GO:0009060;GO:0006122;GO:0008121;GO:0005743;GO:1902600","mitochondrial respiratory chain complex III;mitochondrial respiratory chain complex III assembly;aerobic respiration;mitochondrial electron transport, ubiquinol to cytochrome c;ubiquinol-cytochrome-c reductase activity;mitochondrial inner membrane;hydrogen ion transmembrane transport","A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1. [GOC:mtg_sensu, ISBN:0198547684];The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex (also known as ubiquinol-cytochrome c reductase), in the mitochondrial inner membrane. [GOC:dgf, GOC:mcc];The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:das, GOC:jl, ISBN:0140513590];The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III. [ISBN:0716731363];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+. [EC:1.10.2.2, ISBN:0198547684];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie]"]
["OS05T0258400-00",3.21811518315378E-3,0.0835342863854838,-0.310293881222833,"OS05G0258400",null,2222.03820049594,2170.19859944365,1715.95048896979,1826.28949205427,"no","OS05G0258400","Os05g0258400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKF3]","Protein kinase, catalytic domain domain containing protein. (Os05t0258400-00)",5,9647991,9654813,"GO:0004674;GO:0005886;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0848200-02",0.0032321528579573,0.0837017678042163,0.9577953452953031,"OS01G0848200","P5CS2",374.924193293456,275.326498357895,650.875244991476,612.132318876076,"no","OS01G0848200","Delta-1-pyrroline-5-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q941T1]","Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)]. (Os01t0848200-01);Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)]. (Os01t0848200-02)",1,36430978,36440843,"GO:0055129;GO:0006561;GO:0004350;GO:0004349;GO:0003824;GO:0008152;GO:0008652;GO:0005737;GO:0016310;GO:0016301;GO:0055114;GO:0016491;GO:0005524;GO:0000166;GO:0016740","L-proline biosynthetic process;proline biosynthetic process;glutamate-5-semialdehyde dehydrogenase activity;glutamate 5-kinase activity;catalytic activity;metabolic process;cellular amino acid biosynthetic process;cytoplasm;phosphorylation;kinase activity;oxidation-reduction process;oxidoreductase activity;ATP binding;nucleotide binding;transferase activity","The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [GOC:ecd];The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [ISBN:0198506732];Catalysis of the reaction: L-glutamate 5-semialdehyde + NADP(+) + phosphate = L-glutamyl 5-phosphate + H(+) + NADPH. [EC:1.2.1.41, RHEA:19544];Catalysis of the reaction: L-glutamate + ATP = L-glutamyl 5-phosphate + ADP + H(+). [EC:2.7.2.11, RHEA:14880];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0901900-01",3.2342720834277502E-3,0.0837017678042163,0.533548277476209,"OS01G0901900",null,295.583636633585,304.681757969495,457.605676304327,411.26940585879,"no","OS01G0901900","Os01g0901900 protein [Source:UniProtKB/TrEMBL;Acc:Q5N6Y3]","S1, RNA binding domain containing protein. (Os01t0901900-01)",1,39270573,39274992,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0575200-01",3.2374743322733804E-3,0.0837017678042163,1.38185122810636,"OS03G0575200","HAK16",58.0974734072908,37.0558894827764,129.768773877347,118.203320923785,"no","OS03G0575200","Probable potassium transporter 16 [Source:UniProtKB/Swiss-Prot;Acc:Q84MS3]","Similar to Potassium transporter 1 (OsHAK1). (Os03t0575200-01)",3,21002797,21007629,"GO:0016020;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016021","membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0218400-00",0.0032365361990526,0.0837017678042163,0.560109964036254,"OS04G0218400",null,351.642602202023,321.151042184062,464.435611771556,527.518952883008,"no","OS04G0218400","Os04g0218400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7Y1]","Similar to ankyrin protein kinase-like. (Os04t0218400-00)",4,7914163,7914802,"GO:0032259;GO:0008168","methylation;methyltransferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732]"]
["OS08T0133600-01",3.23826556508849E-3,0.0837017678042163,0.45200902568966406,"OS08G0133600",null,413.817091287019,442.612013266496,592.252975515409,579.293961221526,"no","OS08G0133600","Os08g0133600 protein [Source:UniProtKB/TrEMBL;Acc:Q6YYD7]","Conserved hypothetical protein. (Os08t0133600-01)",8,1914052,1917166]
["OS09T0419200-01",0.00325188364425671,0.0839827126790626,-0.7447999273024001,"OS09G0419200",null,920.293148406784,791.043078326042,558.591051046531,462.64990850511,"no","OS09G0419200","Os09g0419200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ERR4]","NAD(P)-binding domain containing protein. (Os09t0419200-01);Similar to Cinnamoyl-CoA reductase. (Os09t0419200-02)",9,15076258,15079326,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS06T0111500-01",3.2555638007442304E-3,0.0840067442908257,1.04508296458815,"OS06G0111500","G6PGH1",2340.60945119381,2401.87369490828,4090.90940337416,5695.13352309703,"no","OS06G0111500","6-phosphogluconate dehydrogenase, decarboxylating 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI00]","Cytosolic 6-phosphogluconate dehydrogenase. (Os06t0111500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os06t0111500-02)",6,643712,646718,"GO:0019521;GO:0006098;GO:0004616;GO:0055114;GO:0016491;GO:0009737;GO:0009414;GO:0009409;GO:0005737;GO:0009651","D-gluconate metabolic process;pentose-phosphate shunt;phosphogluconate dehydrogenase (decarboxylating) activity;oxidation-reduction process;oxidoreductase activity;response to abscisic acid;response to water deprivation;response to cold;cytoplasm;response to salt stress","The chemical reactions and pathways involving D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose. [ISBN:0198506732];The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY];Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+. [EC:1.1.1.44];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]"]
["OS03T0254700-01",3.26684488798852E-3,0.0841617404578805,0.347133034897948,"OS03G0254700","TPR3",1668.79713825694,1528.13752955952,2070.85638093588,1995.74137970165,"no","OS03G0254700","Protein TPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q10NY2]","WD40 repeat-like domain containing protein. (Os03t0254700-01);Similar to predicted protein. (Os03t0254700-02)",3,8165827,8174895,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0443700-02",0.00326707986983,0.0841617404578805,0.33492920015264804,"OS12G0443700",null,2144.70535118328,2018.71028293409,2692.91056258554,2558.47014553193,"no","OS12G0443700","Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QS11]","Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os12t0443700-01);Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment). (Os12t0443700-02);Similar to Aminoacyl-tRNA synthase. (Os12t0443700-03)",12,14897149,14904687,"GO:0017101;GO:0006433;GO:0004827;GO:0005737;GO:0006418;GO:0004812;GO:0000166;GO:0005524","aminoacyl-tRNA synthetase multienzyme complex;prolyl-tRNA aminoacylation;proline-tRNA ligase activity;cytoplasm;tRNA aminoacylation for protein translation;aminoacyl-tRNA ligase activity;nucleotide binding;ATP binding","A multienzyme complex found in all multicellular eukaryotes composed of eight proteins with aminoacyl-tRNA synthetase activities (abbreviated as: ArgRS, AspRS, GluProRS, GlnRS, IleRS, LeuRS, LysRS, MetRS where RS is the enzyme, preceded by the amino acid it uses as a substrate) as well as three non-synthetase proteins (p43, p38, and p18) with diverse functions. Several of these subunits are known dimers, so the total polypeptide count in the multisynthetase complex is at least fifteen. All of the enzymes in this assembly catalyze the same reaction, the covalent attachment of an amino acid to either the 2'- or 3'-hydroxyl of the 3'-terminal adenosine of tRNA, but using different substrates. [GOC:jl, PMID:16169847];The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mah, ISBN:0716730510];Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). [EC:6.1.1.15];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS07T0519600-00",3.2774369008397803E-3,0.0842605819963801,0.618176072722258,"OS07G0519600",null,386.916167354879,319.342954868149,557.674703743013,526.38602222507,"no","OS07G0519600","Os07g0519600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6Q2]","Similar to taxane 10-beta-hydroxylase. (Os07t0519600-00)",7,20063428,20065199,"GO:0016125;GO:0010268;GO:0007275;GO:0004497;GO:0016132;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;monooxygenase activity;brassinosteroid biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS08T0161700-01",3.2791906256119403E-3,0.0842605819963801,-0.345992805392886,"OS08G0161700",null,2113.93262888984,2333.4917071515,1716.26521240791,1782.81868335461,"no","OS08G0161700","NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Source:UniProtKB/TrEMBL;Acc:Q84SD6]","NADH dehydrogenase [ubiquinone] (complex I), iron-sulphur protein 6, mitochondria domain containing protein. (Os08t0161700-01)",8,3613402,3615762,"GO:0005747;GO:0070469;GO:0005743;GO:0005739;GO:0055114;GO:0016020;GO:0006120","mitochondrial respiratory chain complex I;respiratory chain;mitochondrial inner membrane;mitochondrion;oxidation-reduction process;membrane;mitochondrial electron transport, NADH to ubiquinone","A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone. [GOC:mtg_sensu, ISBN:0198547684];The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. [GOC:ecd, GOC:mah, ISBN:0198547684];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I. [ISBN:0716731363]"]
["OS12T0111400-01",3.2779700980758303E-3,0.0842605819963801,-1.47989888611192,"OS12G0111400",null,78.2027120810005,108.982456462208,27.9987349634686,39.1097569874124,"no","OS12G0111400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QYP2]","Helix-loop-helix DNA-binding domain containing protein. (Os12t0111400-01)",12,599639,602697,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS01T0924200-01",3.3066437697156204E-3,0.0848946054221443,0.52731423583388,"OS01G0924200",null,273.160050406209,276.889840857413,393.209141899028,399.54676246139,"no","OS01G0924200","Os01g0924200 protein [Source:UniProtKB/TrEMBL;Acc:Q5JJP9]","Conserved hypothetical protein. (Os01t0924200-01)",1,40460001,40461062,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0192500-02",0.00331687418559577,0.0850143792938942,-0.28980561637158303,"OS02G0192500","CSLA1",5407.10722804212,5603.73686065332,4520.0377842823,4486.96775264507,"no","OS02G0192500","Glucomannan 4-beta-mannosyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7PC76]","Similar to Cellulose synthase-like protein (Fragment). (Os02t0192500-01);Similar to cDNA clone:J033103E20, full insert sequence. (Os02t0192500-02)",2,5151786,5158885,"GO:0016020;GO:0016021;GO:0016757;GO:0097502;GO:0005794;GO:0000139;GO:0071555;GO:0016740;GO:0047259","membrane;integral component of membrane;transferase activity, transferring glycosyl groups;mannosylation;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity;glucomannan 4-beta-mannosyltransferase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The covalent attachment of a mannose residue to a substrate molecule. [GOC:cjm];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: glucomannan(n) + GDP-mannose = glucomannan(n+1) + GDP. [EC:2.4.1.32, MetaCyc:2.4.1.32-RXN]"]
["OS07T0198300-01",3.3161435287956302E-3,0.0850143792938942,-0.905887102942693,"OS07G0198300",null,183.465705496708,167.780832935904,82.9349306734922,104.526903626818,"no","OS07G0198300","Lipid transfer protein-like [Source:UniProtKB/TrEMBL;Acc:Q6Z387]","Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein. (Os07t0198300-01)",7,5313828,5318057,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0195700-02",0.00332776770864904,0.085150719459502,0.488881038524672,"OS05G0195700",null,555.035206303646,510.35443262564,784.472174008971,710.648771959529,"no","OS05G0195700","Os05g0195700 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4N3]","Similar to Transcription factor MYBS2. (Os05t0195700-01);Similar to Transcription factor MYBS2. (Os05t0195700-02)",5,5870175,5873986,"GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0003676;GO:0008270","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;nucleic acid binding;zinc ion binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS12T0115700-01",3.3273392634768804E-3,0.085150719459502,-0.641483124065768,"OS12G0115700",null,1528.67536504839,1528.81951785727,876.822543624075,1083.19553332761,"no","OS12G0115700","Chalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:Q2QYK6]","Chalcone isomerase domain containing protein. (Os12t0115700-01)",12,766441,768578,"GO:0009813;GO:0045430;GO:0016872;GO:0005783;GO:0016853;GO:0080167","flavonoid biosynthetic process;chalcone isomerase activity;intramolecular lyase activity;endoplasmic reticulum;isomerase activity;response to karrikin","The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:0198547684];Catalysis of the reaction: a chalcone = a flavanone. [EC:5.5.1.6];The catalysis of certain rearrangements of a molecule to break or form a ring. [GOC:jl, http://www.mercksource.com/];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]"]
["OS02T0617800-01",3.3545901354747804E-3,0.0854037034927821,-0.350511540169113,"OS02G0617800",null,7010.42845781309,7831.14464402675,5852.27899034831,5788.05517746634,"no","OS02G0617800","Os02g0617800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLX9]","Hypothetical gene. (Os02t0617800-01)",2,24554106,24554693,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0392050-01",3.36490321847142E-3,0.0854037034927821,-0.440272090397256,"OS03G0392050",null,645.853702091869,714.820679131332,500.207686409883,502.603344402811,"no","OS03G0392050","Os03g0392050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KHD7]","Oligosaccaryltransferase domain containing protein. (Os03t0392050-01)",3,15735544,15739133,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0423600-03",3.3638866986328204E-3,0.0854037034927821,-0.45597500486942105,"OS04G0423600",null,660.519849237972,735.689023696024,512.846196517805,505.014253833804,"no","OS04G0423600","Os04g0423600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JD76]","SET domain containing protein. (Os04t0423600-01);Similar to OSIGBa0076I14.5 protein. (Os04t0423600-02);Similar to OSIGBa0076I14.4 protein. (Os04t0423600-03)",4,20941052,20948918]
["OS04T0556000-02",3.3460420066712604E-3,0.0854037034927821,0.37352208906855905,"OS04G0556000","HMA5",1440.27759819049,1277.41714027388,1769.74828991321,1751.05714879098,"no","OS04G0556000","Probable copper-transporting ATPase HMA5 [Source:Projected from Arabidopsis thaliana (AT1G63440) UniProtKB/Swiss-Prot;Acc:Q9SH30]","Heavy metal P-type ATPase, Xylem loading of copper (Os04t0556000-01);Similar to heavy metal ATPase. (Os04t0556000-02)",4,27829841,27835533,"GO:0099132;GO:0006812;GO:0019829;GO:0000166;GO:0016787;GO:0016021;GO:0016020;GO:0005886;GO:0030001;GO:0046872;GO:0005507;GO:0006810;GO:0006811;GO:0005524;GO:0010273;GO:0046688","ATP hydrolysis coupled cation transmembrane transport;cation transport;cation-transporting ATPase activity;nucleotide binding;hydrolase activity;integral component of membrane;membrane;plasma membrane;metal ion transport;metal ion binding;copper ion binding;transport;ion transport;ATP binding;detoxification of copper ion;response to copper ion","The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). [GOC:ai];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion. [GOC:kmv, PMID:16367966];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. [GOC:ai]"]
["OS05T0456500-02",3.35786065273259E-3,0.0854037034927821,-0.6106757013667421,"OS05G0456500",null,440.36377094013,445.430388917711,266.949636504869,313.148017161093,"no","OS05G0456500","CASP-like protein 5B2 [Source:UniProtKB/Swiss-Prot;Acc:Q0DHM7]","Uncharacterised protein family UPF0497, trans-membrane plant domain containing protein. (Os05t0456500-01);Similar to predicted protein. (Os05t0456500-02)",5,22425364,22427480,"GO:0005886;GO:0016020;GO:0016021","plasma membrane;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0643100-01",0.00334906965007118,0.0854037034927821,-0.864611133162787,"OS07G0643100",null,178.369435899577,174.986144779778,87.813456007227,106.247456428752,"no","OS07G0643100","Os07g0643100 protein [Source:UniProtKB/TrEMBL;Acc:Q8H5P9]","Alpha/beta hydrolase fold-3 domain containing protein. (Os07t0643100-01)",7,26782880,26784563,"GO:0009056;GO:0016787;GO:0008152","catabolic process;hydrolase activity;metabolic process","The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS07T0676900-01",3.3482083097899104E-3,0.0854037034927821,-1.2612080750541201,"OS07G0676900",null,6518.36554945704,6705.26058327731,2187.02865474184,3329.79498410386,"no","OS07G0676900","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q7F1U2]","Similar to Peroxidase (EC 1.11.1.7). (Os07t0676900-01)",7,28660188,28661792,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS08T0537200-01",0.00336176145051951,0.0854037034927821,"-Inf","OS08G0537200",null,21.4043323079492,18.5279447413882,0,0,"no","OS08G0537200","Os08g0537200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJR4]","Hypothetical conserved gene. (Os08t0537200-01)",8,26861859,26862428]
["OS09T0471500-01",3.3460835339095803E-3,0.0854037034927821,-0.90616047823696,"OS09G0471500",null,152.934835479364,151.419707612716,79.8839557109856,82.5206359982708,"no","OS09G0471500","Os09g0471500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XP33]","Conserved hypothetical protein. (Os09t0471500-01)",9,17968402,17971304,"GO:0030247","polysaccharide binding","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah]"]
["OS10T0155100-01",0.00336642906836259,0.0854037034927821,-0.898746658079654,"OS10G0155100",null,575.583283339374,639.952115837635,281.003059223126,370.952373184173,"no","OS10G0155100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7G6D9]","Curculin-like (mannose-binding) lectin domain containing protein. (Os10t0155100-01)",10,3462828,3464263]
["OS11T0134700-01",3.3684034665096402E-3,0.0854037034927821,-0.593025420167205,"OS11G0134700",null,344.202683123981,385.41565327444,229.966620337203,253.734730518405,"no","OS11G0134700","Metacaspase-9 [Source:Projected from Arabidopsis thaliana (AT5G04200) UniProtKB/Swiss-Prot;Acc:Q9FYE1]","Similar to Metacaspase 7 (Metacaspase 4). (Os11t0134700-01)",11,1616990,1618300,"GO:0006508;GO:0008234;GO:0048046","proteolysis;cysteine-type peptidase activity;apoplast","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS03T0809200-01",0.00338320856519091,0.0854952755034844,3.49312302825372,"OS03G0809200",null,2.03850783885231,4.11732105364182,37.0767925363847,32.2372693428505,"no","OS03G0809200","Os03g0809200 protein [Source:UniProtKB/TrEMBL;Acc:Q0DMG8]","Similar to Transcription factor EmBP-1 (Fragment). (Os03t0809200-01)",3,33844223,33845580,"GO:0003700;GO:0003677;GO:0006355","transcription factor activity, sequence-specific DNA binding;DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS05T0120100-02",3.3815320741834203E-3,0.0854952755034844,0.49313319644398806,"OS05G0120100",null,1294.92862323862,1100.54969340874,1682.94218983016,1688.68950744636,"no","OS05G0120100","Os05g0120100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DL70]","Similar to Splicing factor RSZ33. (Os05t0120100-01);Similar to Splicing factor, arginine/serine-rich 6. (Os05t0120100-02)",5,1045879,1049359,"GO:0003723;GO:0003676;GO:0008270","RNA binding;nucleic acid binding;zinc ion binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0166800-02",3.3818344127313103E-3,0.0854952755034844,-0.678465216431792,"OS07G0166800",null,851.227230231015,1010.81096370793,541.337086742722,622.119556617058,"no","OS07G0166800","Os07g0166800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIC8]","Rad6 (Ubiquitin carrier protein). (Os07t0166800-01);Rad6 (Ubiquitin carrier protein). (Os07t0166800-02)",7,3586107,3593883,"GO:0016574;GO:0006281;GO:0000209;GO:0031625;GO:0043161;GO:0061630;GO:0005737;GO:0005524;GO:0000166","histone ubiquitination;DNA repair;protein polyubiquitination;ubiquitin protein ligase binding;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;cytoplasm;ATP binding;nucleotide binding","The modification of histones by addition of ubiquitin groups. [GOC:ai];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS08T0364900-00",3.3778777058834602E-3,0.0854952755034844,1.2512733413556,"OS08G0364900",null,62.1744890849954,41.1732105364182,127.817363743853,118.203320923785,"no","OS08G0364900","Os08g0364900 protein [Source:UniProtKB/TrEMBL;Acc:Q0J657]","Similar to Pirin-like protein. (Os08t0364900-00)",8,16892349,16896395]
["OS02T0218200-01",0.00339468789852735,0.0857144666742212,0.341354232951934,"OS02G0218200",null,1956.95654411005,1803.2071692063,2445.47621666564,2318.44551088254,"no","OS02G0218200","Aminopeptidase M1-A [Source:UniProtKB/Swiss-Prot;Acc:Q6Z6L4]","Peptidase M1, membrane alanine aminopeptidase family protein. (Os02t0218200-01);Similar to APM1 (AMINOPEPTIDASE M1). (Os02t0218200-02)",2,6599225,6606516,"GO:0006508;GO:0043171;GO:0070006;GO:0042277;GO:0043231;GO:0031090;GO:0005737;GO:0008270;GO:0004177;GO:0005783;GO:0008237;GO:0046872;GO:0016787;GO:0008233;GO:0003676;GO:0016020","proteolysis;peptide catabolic process;metalloaminopeptidase activity;peptide binding;intracellular membrane-bounded organelle;organelle membrane;cytoplasm;zinc ion binding;aminopeptidase activity;endoplasmic reticulum;metallopeptidase activity;metal ion binding;hydrolase activity;peptidase activity;nucleic acid binding;membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. [GOC:jl];Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#AMINOPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds. [GOC:jl];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle. [GOC:dos, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0429000-00",3.39919859231994E-3,0.0857574858732939,0.9255639701648061,"OS09G0429000",null,69.831591593966,80.5015258791505,148.19859133604,137.348132337167,"no","OS09G0429000","Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q69L11]","Similar to Glutamate receptor. (Os09t0429000-00)",9,15588269,15594378,"GO:0035235;GO:0004970;GO:0006810;GO:0006811;GO:0016020;GO:0016021","ionotropic glutamate receptor signaling pathway;ionotropic glutamate receptor activity;transport;ion transport;membrane;integral component of membrane","A series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. [GOC:signaling, ISBN:0198506732];Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0282800-02",3.4161448693384704E-3,0.0859133200568897,-0.541533299199737,"OS01G0282800","TUBB1",18029.6481027138,18814.1798951087,11558.7219259218,13754.4739328303,"no","OS01G0282800","Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:Q43594]","Similar to Tubulin beta-5 chain (Beta-5 tubulin). (Os01t0282800-02)",1,10099352,10102948,"GO:0003924;GO:0005856;GO:0005874;GO:0007010;GO:0005200;GO:0005525;GO:0007017;GO:0005737;GO:0000166","GTPase activity;cytoskeleton;microtubule;cytoskeleton organization;structural constituent of cytoskeleton;GTP binding;microtubule-based process;cytoplasm;nucleotide binding","Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah];The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. [GOC:mah];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS07T0142700-00",0.00341611065208912,0.0859133200568897,3.71869105883204,"OS07G0142700",null,3.05776175827846,2.05866052682091,37.0767925363847,30.2834954432838,"no","OS07G0142700","N-hydroxycinnamoyl benzoyltransferase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8H4K0]","Transferase family protein. (Os07t0142700-00)",7,2187512,2188973,"GO:0016747;GO:0016740","transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0440300-02",3.4166235882796903E-3,0.0859133200568897,0.300232813169484,"OS09G0440300",null,2724.46572662611,2855.35385140276,3353.49831440932,3517.17404354918,"no","OS09G0440300","Aldehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q69P84]","Aldehyde dehydrogenase, Seed maturation, Maintenance of viability during storage, Lysine catabolism (Os09t0440300-01);Similar to Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Matured fruit 60 kDa protein) (MF-60). (Os09t0440300-02);Similar to Aldehyde dehydrogenase. (Os09t0440300-03)",9,16330104,16338511,"GO:0055114;GO:0016491;GO:0008152;GO:0009269;GO:0009651;GO:0009737;GO:0005829","oxidation-reduction process;oxidoreductase activity;metabolic process;response to desiccation;response to salt stress;response to abscisic acid;cytosol","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS09T0553600-01",0.0034111116532824,0.0859133200568897,0.37739021142566,"OS09G0553600",null,1045.75452133123,1099.32472132237,1320.12895530865,1466.30731162481,"no","OS09G0553600","Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0IZS0]","Similar to NADC homolog. (Os09t0553600-01)",9,21931023,21934911,"GO:0034213;GO:0019363;GO:0009435;GO:0004514;GO:0005737;GO:0016763;GO:0009536;GO:0009507;GO:0016757;GO:0003824;GO:0016740","quinolinate catabolic process;pyridine nucleotide biosynthetic process;NAD biosynthetic process;nicotinate-nucleotide diphosphorylase (carboxylating) activity;cytoplasm;transferase activity, transferring pentosyl groups;plastid;chloroplast;transferase activity, transferring glycosyl groups;catalytic activity;transferase activity","The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid. [GOC:mah];The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl, GOC:pde, GOC:vw];The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH. [GOC:jl, ISBN:0618254153];Catalysis of the reaction: CO(2) + diphosphate + nicotinate D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + 2 H(+) + quinolinate. [EC:2.4.2.19, RHEA:12736];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor). [GOC:jl];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0686201-01",3.42493696987983E-3,0.0860515413682308,-0.372382042589854,"OS03G0686201",null,2296.15621708983,2586.60116841428,1864.60379259039,1907.35535921246,"no","OS03G0686201","Os03g0686201 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W2D7]","Hypothetical gene. (Os03t0686201-01)",3,27374837,27378363]
["OS08T0490000-02",3.4304168925621604E-3,0.0861184033702212,-0.33325398069385304,"OS08G0490000",null,1380.32073027753,1449.09873357316,1100.74291993496,1145.09232116259,"no","OS08G0490000","BHLH protein family-like [Source:UniProtKB/TrEMBL;Acc:Q6ZBQ2]","Helix-loop-helix DNA-binding domain containing protein. (Os08t0490000-01);Similar to Transcription factor BIM2. (Os08t0490000-02)",8,24222412,24228665,"GO:0046983;GO:0005634","protein dimerization activity;nucleus","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0171900-01",3.4341290383688404E-3,0.0861408131200697,4.6884127833759,"OS12G0171900",null,1.01925391942615,1.05344700991298,27.679161444978,25.7636777064147,"no","OS12G0171900","Os12g0171900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y812]","Hypothetical gene. (Os12t0171900-01)",12,3650086,3650580]
["OS03T0836300-01",0.00344937298339869,0.08624744676474701,-0.736218792272449,"OS03G0836300",null,375.085442348825,343.796307979092,191.238193082406,240.314189646704,"no","OS03G0836300","Harpin-induced protein 1 containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q75LJ9]","Harpin-induced 1 domain containing protein. (Os03t0836300-01)",3,35140216,35141197,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0140800-01",0.00344177715467215,0.08624744676474701,-0.471448633262728,"OS06G0140800",null,721.599798360167,732.640952192148,498.168223020345,550.688412774341,"no","OS06G0140800","Os06g0140800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DEQ5]","Protein kinase, core domain containing protein. (Os06t0140800-01);Similar to Serine threonine kinase. (Os06t0140800-02)",6,2140055,2146616,"GO:0016567;GO:0004842;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016310;GO:0016301;GO:0006950","protein ubiquitination;ubiquitin-protein transferase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;phosphorylation;kinase activity;response to stress","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS07T0143000-01",0.0034524950050172,0.08624744676474701,2.70062102038055,"OS07G0143000",null,6.11552351655692,5.14665131705228,43.9067280036135,29.3066084935005,"no","OS07G0143000","Os07g0143000 protein [Source:UniProtKB/TrEMBL;Acc:Q0D8N4]","Aldo/keto reductase family protein. (Os07t0143000-01)",7,2197573,2201392,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS07T0248100-01",0.00344477604536566,0.08624744676474701,5.46853043991934,"OS07G0248100",null,0,1.67725880175451,26.6119355484659,47.6543621643986,"no","OS07G0248100","Os07g0248100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KN73]","Hypothetical conserved gene. (Os07t0248100-01)",7,8227001,8232024]
["OS08T0389700-02",3.4498800008257204E-3,0.08624744676474701,-0.9702600456759981,"OS08G0389700",null,2597.47267711272,2703.1181324209,1136.67864306445,1568.81739249177,"no","OS08G0389700","Membrane protein-like [Source:UniProtKB/TrEMBL;Acc:Q6Z001]","Conserved hypothetical protein. (Os08t0389700-01);Protein of unknown function DUF81 family protein. (Os08t0389700-02);Similar to cDNA clone:001-103-F02, full insert sequence. (Os08t0389700-03)",8,18452698,18458055,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0297400-01",0.00347242522684982,0.0866744571329378,-0.436537304644287,"OS09G0297400","PPT1",4661.68387789646,5327.51606893744,3597.70308778603,3783.37641590345,"no","OS09G0297400","Phosphoenolpyruvate/phosphate translocator 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q69VR7]","Similar to Phosphate/phosphoenolpyruvate translocator. (Os09t0297400-01)",9,7222188,7225657,"GO:0031969;GO:0008643;GO:0009536;GO:0009507;GO:0006810;GO:0005215;GO:0016021;GO:0016020;GO:0015121;GO:0015714;GO:0035436;GO:0089722;GO:0009670","chloroplast membrane;carbohydrate transport;plastid;chloroplast;transport;transporter activity;integral component of membrane;membrane;phosphoenolpyruvate:phosphate antiporter activity;phosphoenolpyruvate transport;triose phosphate transmembrane transport;phosphoenolpyruvate transmembrane transport;triose-phosphate:phosphate antiporter activity","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphoenolpyruvate(out) + phosphate(in) = phosphoenolpyruvate(in) + phosphate(out). [GOC:bf, GOC:jl];The directed movement of phosphoenolpyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];The directed movement of triose phosphate across a membrane by means of some agent such as a transporter or pore. Triose phosphate is any organic three carbon compound phosphate ester. [GOC:bf, ISBN:0198506732];The directed movement of phosphoenolpytuvate across a membrane. [GOC:dos];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: triose-phosphate(out) + phosphate(in) = triose-phosphate(in) + phosphate(out). [GOC:bf, GOC:jl, GOC:mtg_transport, ISBN:0815340729, TC:2.A.7.-.-]"]
["OS03T0255500-02",0.00348514200864642,0.0869208642025841,0.385098820714024,"OS03G0255500",null,731.435188588882,688.827812274277,932.592147858515,922.199235908353,"no","OS03G0255500","Os03g0255500 protein [Source:UniProtKB/TrEMBL;Acc:Q10NX2]","Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49) (Fragment). (Os03t0255500-01);Similar to Phosphoenolpyruvate carboxykinase. (Os03t0255500-02)",3,8218898,8224127,"GO:0006094;GO:0017076;GO:0004612;GO:0004611;GO:0005524;GO:0005829;GO:0016310;GO:0016301","gluconeogenesis;purine nucleotide binding;phosphoenolpyruvate carboxykinase (ATP) activity;phosphoenolpyruvate carboxykinase activity;ATP binding;cytosol;phosphorylation;kinase activity","The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY];Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate. [GOC:ai];Catalysis of the reaction: ATP + oxaloacetate = ADP + CO(2) + H(+) + phosphoenolpyruvate. [EC:4.1.1.49, RHEA:18620];Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products. [EC:4.1.1.-];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS01T0314100-01",3.4888024498903997E-3,0.0869411847055884,0.45633902220696104,"OS01G0314100",null,549.377862570697,520.841113285691,691.774892323599,776.625125077762,"no","OS01G0314100","Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G06850) UniProtKB/Swiss-Prot;Acc:Q9M7Z1]","Catalytic domain of components of various dehydrogenase complexes containing protein. (Os01t0314100-01)",1,11804161,11809029,"GO:0016746;GO:0008152;GO:0016740;GO:0008270;GO:0016407;GO:0009646;GO:0009744;GO:0043617;GO:0005739","transferase activity, transferring acyl groups;metabolic process;transferase activity;zinc ion binding;acetyltransferase activity;response to absence of light;response to sucrose;cellular response to sucrose starvation;mitochondrion","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of an acetyl group to an acceptor molecule. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sucrose. [GOC:jl];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732]"]
["OS12T0106000-01",0.0034990174818282,0.0871246797920253,-1.72110644787022,"OS12G0106000",null,831.186560291544,911.486019531373,338.799152858196,189.781339667132,"no","OS12G0106000","Ferritin [Source:UniProtKB/TrEMBL;Acc:Q8L5K0]","Ferritin, Iron storage protein, Iron homeostasis (Os12t0106000-01)",12,320568,323716,"GO:0006880;GO:0005506;GO:0005737;GO:0006879;GO:0004322;GO:0006826;GO:0008199;GO:0005623;GO:0055114;GO:0046872;GO:0016491","intracellular sequestering of iron ion;iron ion binding;cytoplasm;cellular iron ion homeostasis;ferroxidase activity;iron ion transport;ferric iron binding;cell;oxidation-reduction process;metal ion binding;oxidoreductase activity","The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system. [GOC:ai];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. [GOC:ai, GOC:mah];Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O. [EC:1.16.3.1];The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with ferric iron, Fe(III). [GOC:ai];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS10T0400800-02",3.5148877002604503E-3,0.0874485741191835,-0.37137936664130705,"OS10G0400800",null,1654.09286631645,1840.68782441792,1358.51798352163,1343.09788380507,"no","OS10G0400800","Os10g0400800 protein [Source:UniProtKB/TrEMBL;Acc:Q338I8]","Similar to Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33). (Os10t0400800-01);Similar to Phenylalanyl-tRNA synthetase alpha chain. (Os10t0400800-02)",10,13537546,13542435,"GO:0043039;GO:0006432;GO:0004826;GO:0000049;GO:0004812;GO:0005737;GO:0000166;GO:0005524;GO:0009328","tRNA aminoacylation;phenylalanyl-tRNA aminoacylation;phenylalanine-tRNA ligase activity;tRNA binding;aminoacyl-tRNA ligase activity;cytoplasm;nucleotide binding;ATP binding;phenylalanine-tRNA ligase complex","The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. [GOC:ma, GOC:mah, MetaCyc:Aminoacyl-tRNAs];The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). [EC:6.1.1.20];Interacting selectively and non-covalently with transfer RNA. [GOC:ai];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe). [EC:6.1.1.20]"]
["OS10T0339600-01",0.00352082427587445,0.0875249985976536,0.312810551067142,"OS10G0339600",null,1411.66667840522,1489.44089115493,1775.78322147948,1827.75548304465,"no","OS10G0339600","Large secreted protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q339Q0]","Similar to Alpha-1,2-fucosidase. (Os10t0339600-01)",10,9921060,9931420,"GO:0004560;GO:0003824","alpha-L-fucosidase activity;catalytic activity","Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose. [EC:3.2.1.51];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS04T0489600-02",3.5305790554520703E-3,0.0876961392700583,-0.35431701826613304,"OS04G0489600",null,3520.19788195733,3134.26222261181,2596.25000484637,2609.13402364343,"no","OS04G0489600","Os04g0489600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JC65]","Hypothetical conserved gene. (Os04t0489600-01);Helix-loop-helix DNA-binding domain containing protein. (Os04t0489600-02)",4,24461146,24468929,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983;","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity;","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];"]
["OS01T0266500-01",3.5442191179594E-3,0.0877495806255232,0.41207570906829405,"OS01G0266500",null,666.592063304705,624.803469890147,818.616551000705,899.712880750464,"no","OS01G0266500","Os01g0266500 protein [Source:UniProtKB/TrEMBL;Acc:Q9SDD7]","Phenazine biosynthesis PhzC/PhzF protein family protein. (Os01t0266500-01)",1,9114579,9117424,"GO:0009058;GO:0005623;GO:0055114;GO:0045454;GO:0016491;GO:0003824","biosynthetic process;cell;oxidation-reduction process;cell redox homeostasis;oxidoreductase activity;catalytic activity","The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0723400-03",0.00353719842655706,0.0877495806255232,0.6119644634134811,"OS01G0723400",null,16805.8122300116,18938.9994130623,25103.8927695252,29526.2924129976,"no","OS01G0723400","Malic enzyme [Source:UniProtKB/TrEMBL;Acc:Q0JJQ7]","NADP-malic enzyme, Splicing variant (Os01t0723400-01);Similar to Malic enzyme. (Os01t0723400-02);NADP-malic enzyme, Salt and osmotic stress tolerance, Disease resistance (Os01t0723400-03);NADP-malic enzyme, Splicing variant (Os01t0723400-04);NADP-malic enzyme, Splicing variant (Os01t0723400-05)",1,30166017,30171643,"GO:0051287;GO:0004471;GO:0004470;GO:0055114;GO:0046872;GO:0016491;GO:0006108;GO:0006090;GO:0004473;GO:0009507","NAD binding;malate dehydrogenase (decarboxylating) (NAD+) activity;malic enzyme activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;malate metabolic process;pyruvate metabolic process;malate dehydrogenase (decarboxylating) (NADP+) activity;chloroplast","Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of the reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH + H+. [EC:1.1.1.38, EC:1.1.1.39];Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators];Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+. [EC:1.1.1.40];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS02T0137800-01",0.00354144180063951,0.0877495806255232,-0.39153653241358205,"OS02G0137800","RGG2",846.061927854058,908.36101256094,655.073186079701,682.353722413602,"no","OS02G0137800","Guanine nucleotide-binding protein subunit gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6YXX9]","Heterotrimeric G protein gamma subunit 2, Regulation of abiotic stresses (Os02t0137800-01);Similar to G protein gamma subunit 2. (Os02t0137800-02)",2,2007232,2009961,"GO:0005515;GO:0005834;GO:0007165;GO:0004871;GO:0007186;GO:0005886;GO:0043531;GO:0016020","protein binding;heterotrimeric G-protein complex;signal transduction;signal transducer activity;G-protein coupled receptor signaling pathway;plasma membrane;ADP binding;membrane","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein. [ISBN:0198547684];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.  The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576). [GOC:bf, GOC:mah, PMID:16902576PMID\\:24568158, Wikipedia:G_protein-coupled_receptor];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0235000-01",0.00353983666752868,0.0877495806255232,1.24509993722866,"OS03G0235000",null,556.51264000668,458.051967217653,990.340642748171,1414.53230328629,"no","OS03G0235000","Os03g0235000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VV33]","Similar to Peroxidase. (Os03t0235000-01)",3,7128273,7129609,"GO:0098869;GO:0055114;GO:0006979;GO:0020037;GO:0004601","cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding;peroxidase activity","Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7]"]
["OS01T0618100-01",3.5491388050391103E-3,0.0878002338231214,0.40686704786298905,"OS01G0618100",null,600.340558542005,617.598158046274,844.960587802873,769.786916429279,"no","OS01G0618100","Os01g0618100 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZBH8]","Similar to IN2-2 protein. (Os01t0618100-01)",1,24579647,24582075]
["OS02T0819500-01",3.5618789430557E-3,0.0880441144565029,0.5316490974867231,"OS02G0819500",null,697.006496243267,801.561921711896,1140.9571497895,1025.34435402852,"no","OS02G0819500","OTU-like cysteine protease-like [Source:UniProtKB/TrEMBL;Acc:Q6K722]","Similar to Cysteine-type peptidase. (Os02t0819500-01);Ovarian tumour, otubain domain containing protein. (Os02t0819500-03);Similar to Cysteine-type peptidase. (Os02t0819500-04)",2,35179147,35184150,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS04T0390000-02",0.00356740745917427,0.0881094847960326,0.39057464284695304,"OS04G0390000",null,877.484600556937,815.196592302513,1137.56428822429,1081.39764505439,"no","OS04G0390000","Os04g0390000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9W2]","Similar to OSIGBa0096P03.7 protein. (Os04t0390000-01);Similar to OSIGBa0096P03.7 protein. (Os04t0390000-02);Similar to OSIGBa0096P03.7 protein. (Os04t0390000-03);Similar to OSIGBa0096P03.7 protein. (Os04t0390000-04)",4,19175720,19182525,"GO:0006099;GO:0030976;GO:0004591;GO:0055114;GO:0016624;GO:0008152;GO:0005739;GO:0045252","tricarboxylic acid cycle;thiamine pyrophosphate binding;oxoglutarate dehydrogenase (succinyl-transferring) activity;oxidation-reduction process;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;metabolic process;mitochondrion;oxoglutarate dehydrogenase complex","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. [EC:1.2.4.2];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). [MetaCyc:CPLX66-42, PMID:10848975]"]
["OS02T0828600-01",3.5730444936831604E-3,0.0881241242196262,-0.41866222350832705,"OS02G0828600",null,825.29188051744,897.159877459773,669.063799918893,619.533389621112,"no","OS02G0828600","Os02g0828600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRM2]","Hypothetical conserved gene. (Os02t0828600-01)",2,35609003,35609743]
["OS12T0420400-01",0.0035737689810198,0.0881241242196262,-8.19329224934947,"OS12G0420400",null,112.766977164647,118.572205504634,0.7903554758415111,0,"no","OS12G0420400","Photosystem I reaction center subunit XI, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G12800) UniProtKB/Swiss-Prot;Acc:Q9SUI4]","Similar to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V). (Os12t0420400-01);Similar to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V). (Os12t0420400-02);Similar to Photosystem I reaction center subunit XI, chloroplastic. (Os12t0420400-03)",12,13115340,13117325,"GO:0009538;GO:0009522;GO:0015979;GO:0016020;GO:0016021;GO:0019904;GO:0009507;GO:0009534;GO:0009535;GO:0009579;GO:0009941;GO:0010287;","photosystem I reaction center;photosystem I;photosynthesis;membrane;integral component of membrane;protein domain specific binding;chloroplast;chloroplast thylakoid;chloroplast thylakoid membrane;thylakoid;chloroplast envelope;plastoglobule;","A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. [GOC:kd, ISBN:0943088399];A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). [GOC:ds, GOC:mah, ISBN:0140514031, PMID:9821949];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with a specific domain of a protein. [GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379];"]
["OS03T0858600-01",3.5772674501024304E-3,0.0881392541415561,-0.628284558892214,"OS03G0858600",null,272.140796486783,266.596538223308,177.578322147948,170.955216212086,"no","OS03G0858600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10AB4]","Protein of unknown function DUF668 family protein. (Os03t0858600-01)",3,36239056,36240813]
["OS01T0739200-01",3.5822292022729203E-3,0.0881903840353282,-0.497802714068979,"OS01G0739200",null,972.368239132551,1004.62633708861,642.989638986251,757.087386082095,"no","OS01G0739200","Os01g0739200 protein [Source:UniProtKB/TrEMBL;Acc:Q5JNL3]","Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os01t0739200-01)",1,30868528,30871602,"GO:0004439;GO:0035335;GO:0016311;GO:0004725;GO:0008138;GO:0016791;GO:0006470","phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;peptidyl-tyrosine dephosphorylation;dephosphorylation;protein tyrosine phosphatase activity;protein tyrosine/serine/threonine phosphatase activity;phosphatase activity;protein dephosphorylation","Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate. [EC:3.1.3.36, RHEA:22767];The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [GOC:mah];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric residues from a protein. [GOC:hb]"]
["OS04T0678200-01",3.6071136105208504E-3,0.0887315096848896,-0.36418065983199405,"OS04G0678200",null,982.467441368712,974.610319578706,737.009900666654,783.463333726246,"no","OS04G0678200","OSJNBa0064G10.22 protein [Source:UniProtKB/TrEMBL;Acc:Q7XKA9]","Protein of unknown function DUF1218 family protein. (Os04t0678200-01)",4,34642807,34644512,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0456700-01",3.6139793121687503E-3,0.0887574726249033,-0.68734401278469,"OS04G0456700",null,430.436239691132,378.089239727078,227.339280552043,274.751845097365,"no","OS04G0456700","OSJNBa0006M15.20 protein [Source:UniProtKB/TrEMBL;Acc:Q7XRE7]","Similar to TMV induced protein 1-2. (Os04t0456700-01)",4,22829317,22830301]
["OS04T0477500-02",3.6111954334462405E-3,0.0887574726249033,-1.2479979963346701,"OS04G0477500",null,187.934287834578,184.60876813584,73.719114267572,83.1334566029915,"no","OS04G0477500","OSJNBa0044K18.7 protein [Source:UniProtKB/TrEMBL;Acc:Q7XK38]","Glycosyl transferase, family 17 protein. (Os04t0477500-01);Glycosyl transferase, family 17 protein. (Os04t0477500-02);Glycosyl transferase, family 17 protein. (Os04t0477500-03)",4,23892824,23896476,"GO:0006487;GO:0003830;GO:0016020;GO:0016021","protein N-linked glycosylation;beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity;membrane;integral component of membrane","A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. [GOC:pr, RESID:AA0151, RESID:AA0156, RESID:AA0327];Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R. [EC:2.4.1.144];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0756200-02",3.6238080669284E-3,0.0888560064693392,1.62698172317809,"OS02G0756200",null,60.1359812461431,43.2318710632392,143.428644811804,175.839650961003,"no","OS02G0756200","Os02g0756200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z681]","Similar to Phi-1-like phosphate-induced protein. (Os02t0756200-01);Similar to Phi-1 protein. (Os02t0756200-02)",2,31824134,31825261]
["OS09T0114500-04",3.6213478588883402E-3,0.0888560064693392,-0.8902742008329391,"OS09G0114500","KIN4A",381.45923360386,494.824222854111,220.503012533639,252.262049169481,"no","OS09G0114500","Kinesin-like protein KIN-4A [Source:UniProtKB/Swiss-Prot;Acc:Q6YUL8]","Kinesin-4 protein with transcription regulation activity, Cell cycle and wall modification, Cell elongation by regulating GA biosynthesis pathway (Os09t0114500-01);Similar to Kinesin-like protein. (Os09t0114500-02);Similar to FRA1 (FRAGILE FIBER 1); microtubule motor. (Os09t0114500-03);Hypothetical protein. (Os09t0114500-04)",9,1158082,1167873,"GO:0003774;GO:0005874;GO:0007018;GO:0008017;GO:0003777;GO:0005524;GO:0000166;GO:0045893;GO:0005871;GO:0008574;GO:0040008;GO:0007049;GO:0005856;GO:0005737;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0071555;GO:0043565;GO:0009832;GO:0009937;GO:0010215;GO:0042127","motor activity;microtubule;microtubule-based movement;microtubule binding;microtubule motor activity;ATP binding;nucleotide binding;positive regulation of transcription, DNA-templated;kinesin complex;ATP-dependent microtubule motor activity, plus-end-directed;regulation of growth;cell cycle;cytoskeleton;cytoplasm;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;cell wall organization;sequence-specific DNA binding;plant-type cell wall biogenesis;regulation of gibberellic acid mediated signaling pathway;cellulose microfibril organization;regulation of cell proliferation","Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work. [GOC:mah, http://www.proweb.org/kinesin//KinesinMotility.html, http://www.proweb.org/kinesin//KinesinStructure.html];Catalysis of movement along a microtubule toward the plus end, coupled to the hydrolysis of ATP. [EC:3.6.4.4, GOC:vw];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu];Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling. [GOC:go_curators];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730];Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl]"]
["OS01T0546900-01",0.00366204945897103,0.0890079037951335,0.540282475027345,"OS01G0546900",null,317.287764885571,373.084144677608,506.156750096864,497.821589609595,"no","OS01G0546900","Os01g0546900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3U4]","Similar to transcription factor jumonji (jmjC) domain-containing protein. (Os01t0546900-01)",1,20322698,20326374,"GO:0000987;GO:0033746;GO:0033749;GO:0010030;GO:0043985;GO:0005634","core promoter proximal region sequence-specific DNA binding;histone demethylase activity (H3-R2 specific);histone demethylase activity (H4-R3 specific);positive regulation of seed germination;histone H4-R3 methylation;nucleus","Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to the core promoter. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];Catalysis of the removal of a methyl group from arginine at position 2 of the histone H3 protein. [GOC:mah];Catalysis of the removal of a methyl group from arginine at position 3 of the histone H4 protein. [GOC:mah];Any process that activates or increase the rate of seed germination. [GOC:sm];The modification of histone H4 by addition of a methyl group to arginine at position 3 of the histone. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS01T0681200-02",3.6417503275827405E-3,0.0890079037951335,-0.605385011134539,"OS01G0681200",null,961.402472827,1031.06947661415,687.905717058913,621.738014901767,"no","OS01G0681200","Os01g0681200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JKD5]","Similar to Acyl-CoA synthetase (EC 6.2.1.3). (Os01t0681200-01);Similar to Acyl-CoA synthetase (EC 6.2.1.3). (Os01t0681200-02)",1,28061734,28067159,"GO:0008152;GO:0003824","metabolic process;catalytic activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0815400-01",0.00365675331126319,0.0890079037951335,-0.326390769095912,"OS01G0815400",null,1446.32131166571,1367.9799200725,1135.72069769347,1108.7666880041,"no","OS01G0815400","Os01g0815400 protein [Source:UniProtKB/TrEMBL;Acc:Q5N756]","Conserved hypothetical protein. (Os01t0815400-01)",1,34674484,34676184]
["OS01T0897800-01",0.0036595460745862,0.0890079037951335,-5.49207982162646,"OS01G0897800",null,181.570451512613,163.95376310619,0.558550116915641,7.11855918025876,"no","OS01G0897800","Sister chromatid cohesion 1 protein 4 [Source:Projected from Arabidopsis thaliana (AT5G16270) UniProtKB/Swiss-Prot;Acc:Q8W1Y0]","Rad21/Rec8 like protein, C-terminal domain containing protein. (Os01t0897800-01);Similar to Rad21/Rec8-like protein. (Os01t0897800-02);Rad21/Rec8 like protein, C-terminal domain containing protein. (Os01t0897800-03);Similar to Rad21/Rec8-like protein. (Os01t0897800-04)",1,39025299,39035049,"GO:0000228;GO:0003682;GO:0006302;GO:0007062;GO:0000798;;GO:0070601","nuclear chromosome;chromatin binding;double-strand break repair;sister chromatid cohesion;nuclear cohesin complex;;centromeric sister chromatid cohesion","A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact. [GOC:dph, GOC:mah];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. [GOC:elh];The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other. [GOC:jh, GOC:mah, ISBN:0815316194];A cohesin complex required for cohesion between sister chromatids that remain in the nucleus. [GOC:elh];;The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the centromeric region of the chromosome. [GOC:mah]"]
["OS03T0121300-01",0.00364556010952295,0.0890079037951335,-0.829788322617203,"OS03G0121300",null,477.124262235452,461.840160726254,227.507505563551,300.764944213066,"no","OS03G0121300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q8LMR6]","Similar to Peroxidase 1. (Os03t0121300-01);Similar to Peroxidase 5. (Os03t0121300-02)",3,1178482,1180131,"GO:0098869;GO:0055114;GO:0006979;GO:0020037;GO:0004601;GO:0009506;GO:0009505;GO:0009664;GO:0042744;GO:0046872;GO:0016491;GO:0005576","cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding;peroxidase activity;plasmodesma;plant-type cell wall;plant-type cell wall organization;hydrogen peroxide catabolic process;metal ion binding;oxidoreductase activity;extracellular region","Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0223000-03",3.6358947791743502E-3,0.0890079037951335,-1.00193222666419,"OS03G0223000",null,1238.52667404897,1666.99523474005,673.965126256074,776.851422399432,"no","OS03G0223000","Leucine Rich Repeat family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8H811]","Similar to atypical receptor-like kinase MARK. (Os03t0223000-01);Similar to Atypical receptor-like kinase MARK. (Os03t0223000-02);Similar to atypical receptor-like kinase MARK. (Os03t0223000-03)",3,6428279,6438500,"GO:0016310;GO:0016301;GO:0008237;GO:0046872;GO:0004222;GO:0008233;GO:0006508;GO:0016787;GO:0006468;GO:0005524;GO:0004672;GO:0004674;GO:0000166;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;metallopeptidase activity;metal ion binding;metalloendopeptidase activity;peptidase activity;proteolysis;hydrolase activity;protein phosphorylation;ATP binding;protein kinase activity;protein serine/threonine kinase activity;nucleotide binding;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0432100-01",3.64255496160898E-3,0.0890079037951335,-1.04545046756894,"OS03G0432100",null,139.637786961383,114.255659238561,64.3965344052998,58.6132169870009,"no","OS03G0432100","Os03g0432100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZ25]","Similar to Pyruvate, phosphate dikinase 2. (Os03t0432100-01)",3,18153151,18160127]
["OS04T0506700-00",3.6523829302836605E-3,0.0890079037951335,-0.639061300842882,"OS04G0506700",null,396.489774656774,356.148271140018,220.509345084814,262.782589491721,"no","OS04G0506700","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q7XUM4]","Similar to OSIGBa0145C12.7 protein. (Os04t0506700-00)",4,25297169,25299569,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0297800-01",3.6604982111927303E-3,0.0890079037951335,1.8863569290501099,"OS05G0297800",null,12.4847659860568,14.9573333712114,45.4421704767621,56.0114034413455,"no","OS05G0297800","Os05g0297800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WKA0]","Conserved hypothetical protein. (Os05t0297800-01)",5,13275328,13278767,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS07T0519300-01",3.6547959816633203E-3,0.0890079037951335,0.5664856969217851,"OS07G0519300",null,615.758102055244,542.713841047422,917.748872888437,797.845871015452,"no","OS07G0519300","Os07g0519300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X743]","Similar to taxane 10-beta-hydroxylase. (Os07t0519300-01)",7,20050247,20054019,"GO:0016125;GO:0010268;GO:0007275;GO:0004497;GO:0016132;GO:0016705;GO:0005506;GO:0055114;GO:0020037","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;monooxygenase activity;brassinosteroid biosynthetic process;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS12T0620600-01",0.00364089551239476,0.0890079037951335,-0.41421433577140904,"OS12G0620600",null,1605.03938733575,1403.30821223074,1114.00875040885,1143.53967908713,"no","OS12G0620600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QM21]","Conserved hypothetical protein. (Os12t0620600-01)",12,26433354,26437997]
["OS08T0431300-01",0.00366601401245942,0.0890334341086329,-0.356336835176912,"OS08G0431300",null,1790.77476138127,2006.16468338698,1463.55760012045,1502.40448454637,"no","OS08G0431300","Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:Q6ZKB1]","Similar to Dihydrolipoamide S-acetyltransferase. (Os08t0431300-01)",8,20858831,20862257,"GO:0016746;GO:0008152;GO:0016740","transferase activity, transferring acyl groups;metabolic process;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0719400-01",0.0036719597505146,0.0890362811886682,1.77574576014945,"OS03G0719400",null,46.490551020874,30.2904236104927,104.800180341077,158.109367995772,"no","OS03G0719400","Hydrolase, alpha/beta fold family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q6ASW1]","Alpha/beta hydrolase fold-1 domain containing protein. (Os03t0719400-01)",3,29150126,29153530,"GO:0016020;GO:0016787;GO:0006629;GO:0016298","membrane;hydrolase activity;lipid metabolic process;lipase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of a lipid or phospholipid. [GOC:mah]"]
["OS06T0203200-02",0.00367118226429671,0.0890362811886682,-0.8687307495424751,"OS06G0203200",null,203.850783885231,188.367438204113,103.424737075178,111.365112050533,"no","OS06G0203200","Os06g0203200 protein [Source:UniProtKB/TrEMBL;Acc:Q69SQ4]","Flavin-containing monooxygenase FMO family protein. (Os06t0203200-01);Hypothetical conserved gene. (Os06t0203200-02)",6,5208685,5212330,"GO:0004499;GO:0050661;GO:0050660;GO:0055114;GO:0016491;GO:0004497","N,N-dimethylaniline monooxygenase activity;NADP binding;flavin adenine dinucleotide binding;oxidation-reduction process;oxidoreductase activity;monooxygenase activity","Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. [EC:1.14.13.8];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732]"]
["OS02T0637200-01",0.00369586399749238,0.0894738802308931,1.55488272348913,"OS02G0637200",null,20.3850783885231,17.4986144779778,48.7852533373483,62.5207647861343,"no","OS02G0637200","Os02g0637200 protein [Source:UniProtKB/TrEMBL;Acc:Q6H5W6]","Conserved hypothetical protein. (Os02t0637200-01)",2,25550305,25550944]
["OS03T0137200-02",3.6944800289464E-3,0.0894738802308931,-0.329539256695603,"OS03G0137200",null,2576.78042554097,2759.90096558559,2205.18487354427,2041.69595499304,"no","OS03G0137200","Probable protein phosphatase 2C 28 [Source:UniProtKB/Swiss-Prot;Acc:Q10S32]","Protein phosphatase 2C domain containing protein. (Os03t0137200-01);Similar to Protein phosphatase 2C. (Os03t0137200-02)",3,2055599,2058939,"GO:0006470;GO:0004722;GO:0003824;GO:0004721;GO:0043169;GO:0046872;GO:0016787","protein dephosphorylation;protein serine/threonine phosphatase activity;catalytic activity;phosphoprotein phosphatase activity;cation binding;metal ion binding;hydrolase activity","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0558300-01",0.00370817460858457,0.0897008318618177,0.295544297114371,"OS01G0558300",null,1642.01806419553,1637.66444908604,1975.80276016261,2049.50882064547,"no","OS01G0558300","Os01g0558300 protein [Source:UniProtKB/TrEMBL;Acc:Q5JKR6]","RWD domain containing protein. (Os01t0558300-01)",1,21124944,21128357,"GO:0002181;GO:0005844","cytoplasmic translation;polysome","The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. [GOC:hjd];A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro. [ISBN:0198506732, NIF_Subcellular:sao1038025871]"]
["OS03T0334000-02",0.00371604910514092,0.0898201995729948,-0.427030693967109,"OS03G0334000",null,2187.77915744913,2322.62123207131,1567.95804226238,1786.83742900974,"no","OS03G0334000","Os03g0334000 protein [Source:UniProtKB/TrEMBL;Acc:Q10LV1]","Similar to Ribosomal protein S6 kinase. (Os03t0334000-02)",3,12340180,12344264,"GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0115300-01",0.00372503310511529,0.08982416055839179,0.642646839057694,"OS01G0115300",null,201.94372309279,171.602778357054,296.647508553691,286.529841909242,"no","OS01G0115300","Os01g0115300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXG5]","Hypothetical gene. (Os01t0115300-01)",1,808174,810139]
["OS01T0936800-02",3.7205681423049604E-3,0.08982416055839179,0.362146295776525,"OS01G0936800",null,1840.48757383318,2051.66498370371,2434.39338992294,2568.3330166958,"no","OS01G0936800","Os01g0936800 protein [Source:UniProtKB/TrEMBL;Acc:Q5JMK3]","PapD-like domain containing protein. (Os01t0936800-01);Similar to VAP27-2. (Os01t0936800-02)",1,41117216,41122215,"GO:0005789;GO:0016020;GO:0016021","endoplasmic reticulum membrane;membrane;integral component of membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0103300-00",3.7237277893898604E-3,0.08982416055839179,-0.765605187388094,"OS03G0103300",null,241.563178903999,269.684529013539,133.671594144334,167.047668412953,"no","OS03G0103300","Os03g0103300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRX0]","Hybrid proline- or glycine-rich protein, Controll of low-temperature germinability, Pre-harvest sprouting resistance (Os03t0103300-01)",3,220396,220853]
["OS05T0355700-00",3.7353320850066203E-3,0.0899198891596388,-1.64905985504811,"OS05G0355700",null,138.618533041957,149.252888194516,33.1739722693969,58.6132169870009,"no","OS05G0355700","Os05g0355700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WL71]","Conserved hypothetical protein. (Os05t0355700-00)",5,16867985,16870785,"GO:0016702;GO:0046872;GO:0055114","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;metal ion binding;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS07T0111600-02",3.7373260671010903E-3,0.0899198891596388,-0.719207879322172,"OS07G0111600",null,1536.46951988876,1473.8032815657,811.857201090404,1016.67540861537,"no","OS07G0111600","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q8H5T7]","Similar to Purple acid phosphatase. (Os07t0111600-01);Similar to hydrolase/ protein serine/threonine phosphatase. (Os07t0111600-02);Similar to hydrolase/ protein serine/threonine phosphatase. (Os07t0111600-03)",7,658777,663168,"GO:0016787;GO:0016020;GO:0016021;GO:0003993;GO:0004499;GO:0050661;GO:0016311;GO:0050660;GO:0046872;GO:0055114;GO:0016491;GO:0004497","hydrolase activity;membrane;integral component of membrane;acid phosphatase activity;N,N-dimethylaniline monooxygenase activity;NADP binding;dephosphorylation;flavin adenine dinucleotide binding;metal ion binding;oxidation-reduction process;oxidoreductase activity;monooxygenase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. [EC:1.14.13.8];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732]"]
["OS08T0187800-01",0.00374051178505989,0.0899198891596388,0.42322677215452503,"OS08G0187800",null,19082.4718794965,20014.2976417529,24871.6978564469,27554.0733055891,"no","OS08G0187800","Glucose-6-phosphate/phosphate translocator [Source:UniProtKB/TrEMBL;Acc:Q6YZC3]","Similar to Glucose-6-phosphate/phosphate-translocator precursor. (Os08t0187800-01)",8,5139674,5143593,"GO:0006810;GO:0005215;GO:0016021;GO:0016020","transport;transporter activity;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0394600-01",3.7407756978888804E-3,0.0899198891596388,-0.35053869763802104,"OS09G0394600",null,1533.97714873636,1470.91294641354,1235.24261450166,1121.46621835128,"no","OS09G0394600","Inositol 1,4,5-trisphosphate 5-phosphatase-like protein [Source:UniProtKB/TrEMBL;Acc:Q6H453]","Endonuclease/exonuclease/phosphatase domain containing protein. (Os09t0394600-01)",9,13688245,13690936,"GO:0046856;GO:0016787","phosphatidylinositol dephosphorylation;hydrolase activity","The process of removing one or more phosphate groups from a phosphatidylinositol. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0695800-01",3.7439194134199403E-3,0.0899247059110109,0.588376755593066,"OS07G0695800",null,506.175082329306,421.208962482999,670.597721453194,723.774338726777,"no","OS07G0695800","Os07g0695800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3X5]","Similar to 2-oxoglutarate dehydrogenase, E1 component. (Os07t0695800-01);Similar to OSIGBa0096P03.7 protein. (Os07t0695800-02)",7,29656862,29662462,"GO:0006099;GO:0030976;GO:0004591;GO:0055114;GO:0005739;GO:0016624;GO:0008152;GO:0045252","tricarboxylic acid cycle;thiamine pyrophosphate binding;oxoglutarate dehydrogenase (succinyl-transferring) activity;oxidation-reduction process;mitochondrion;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;metabolic process;oxoglutarate dehydrogenase complex","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. [EC:1.2.4.2];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). [MetaCyc:CPLX66-42, PMID:10848975]"]
["OS02T0240100-01",0.00376412243963575,0.090126542927705,-1.28636057870827,"OS02G0240100",null,154.381276346643,106.202840093008,48.0225883996178,58.8127231701789,"no","OS02G0240100","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q6ER51]","Similar to Peroxidase 2 (Fragment). (Os02t0240100-01)",2,7938411,7939811,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0016020;GO:0016021","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0524000-01",0.00375997905585837,0.090126542927705,0.31736140183516404,"OS07G0524000",null,1088.56318594713,1120.94065685399,1378.67125931346,1374.47993834517,"no","OS07G0524000","Os07g0524000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X775]","Conserved hypothetical protein. (Os07t0524000-01)",7,20327925,20329007]
["OS10T0578800-02",3.7568537834986302E-3,0.090126542927705,-1.21828218144688,"OS10G0578800",null,87.4347553649776,99.6183342454323,45.2805679197723,35.1137594847545,"no","OS10G0578800","LrgB-like family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XBT7]","Similar to LrgB-like family protein, expressed. (Os10t0578800-01);LrgB-like protein family protein. (Os10t0578800-02)",10,23075402,23079074,"GO:0009658;GO:0009706;GO:0016020;GO:0016021;","chloroplast organization;chloroplast inner membrane;membrane;integral component of membrane;","A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid];The inner, i.e. lumen-facing, lipid bilayer of the chloroplast envelope; also faces the chloroplast stroma. [GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS12T0514500-01",0.00376361306559215,0.090126542927705,0.839848555954902,"OS12G0514500",null,328.296825902246,253.501426622016,551.95517512898,489.38355113247,"no","OS12G0514500","Heat shock protein 90-6, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G07770) UniProtKB/Swiss-Prot;Acc:F4JFN3]","Similar to Heat-shock protein precursor. (Os12t0514500-01);Similar to ATP binding. (Os12t0514500-02);Similar to ATP binding. (Os12t0514500-03)",12,19921665,19927728,"GO:0006950;GO:0006457;GO:0051082;GO:0005524;GO:0005618;GO:0005739;GO:0009570","response to stress;protein folding;unfolded protein binding;ATP binding;cell wall;mitochondrion;chloroplast stroma","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS01T0911100-02",0.0037709676212286,0.0902197359152515,-0.289417172657057,"OS01G0911100",null,2293.77894534673,2364.70425294611,1902.81506093756,1908.90750493516,"no","OS01G0911100","DEAD-box ATP-dependent RNA helicase 30 [Source:Projected from Arabidopsis thaliana (AT5G63120) UniProtKB/Swiss-Prot;Acc:Q8W4R3]","Similar to DEAD box RNA helicase1. (Os01t0911100-01);Similar to DEAD box RNA helicase1. (Os01t0911100-02)",1,39688363,39692555,"GO:0005730;GO:0010501;GO:0004004;GO:0005737;GO:0042254;GO:0006364;GO:0003723;GO:0004386;GO:0016787;GO:0005634;GO:0000184;GO:0003676;GO:0005524;GO:0000166;GO:0003729","nucleolus;RNA secondary structure unwinding;ATP-dependent RNA helicase activity;cytoplasm;ribosome biogenesis;rRNA processing;RNA binding;helicase activity;hydrolase activity;nucleus;nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;nucleic acid binding;ATP binding;nucleotide binding;mRNA binding","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The process in which a secondary structure of RNA are broken or 'melted'. [PMID:17169986];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. [GOC:krc, GOC:ma, PMID:10025395];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234]"]
["OS02T0739100-01",3.7882122619231602E-3,0.0904732572819558,-0.41124777286594205,"OS02G0739100",null,623.783398688806,638.184763314483,469.314137105291,479.651492343624,"no","OS02G0739100","Os02g0739100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KG25]","Similar to Formin-like protein 16. (Os02t0739100-01)",2,30882052,30886269,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0576200-00",0.00379044806627728,0.0904732572819558,-1.43030796127273,"OS03G0576200","HAK21",117.214200734008,156.458200038389,40.9796128033726,60.5669908865676,"no","OS03G0576200","Potassium transporter 21 [Source:UniProtKB/Swiss-Prot;Acc:Q75G84]","Potassium transporter 21. (Os03t0576200-00)",3,21060638,21064968,"GO:0016020;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016021","membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0314800-03",0.00378614112272587,0.0904732572819558,0.379928304624481,"OS08G0314800",null,4369.5949295482,3867.62279011988,5445.37919504588,5273.52430200511,"no","OS08G0314800","Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q6Z050]","Similar to Poly(A)-binding protein. (Os08t0314800-01);Similar to Poly(A)-binding protein. (Os08t0314800-02);Hypothetical conserved gene. (Os08t0314800-03);Hypothetical conserved gene. (Os08t0314800-04)",8,13471744,13479204,"GO:0003723;GO:0003676;GO:0005737","RNA binding;nucleic acid binding;cytoplasm","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS02T0454500-01",3.8034402903891202E-3,0.090641737716044,-0.563096979795052,"OS02G0454500",null,436.216974670277,379.822867198458,267.211795115691,285.122845540535,"no","OS02G0454500","Os02g0454500 protein [Source:UniProtKB/TrEMBL;Acc:Q6K3V2]","Membrane bound O-acyl transferase, MBOAT family protein. (Os02t0454500-01)",2,15044721,15046322,"GO:0008374;GO:0016020;GO:0016021","O-acyltransferase activity;membrane;integral component of membrane","Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0279700-01",0.00380052837572093,0.090641737716044,-1.20897399534147,"OS03G0279700",null,78.4825517958139,88.5224026532992,39.0282026698787,33.2141562926339,"no","OS03G0279700","Os03g0279700 protein [Source:UniProtKB/TrEMBL;Acc:Q10N75]","Similar to ZPT2-12. (Os03t0279700-01)",3,9524919,9525850,"GO:0005634;GO:0003677;GO:0003676","nucleus;DNA binding;nucleic acid binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS01T0770700-00",0.00381259858625538,0.090737448576932,-1.30042861794252,"OS01G0770700","COPT1",396.489774656774,291.300464545159,118.060313076383,161.186346714253,"no","OS01G0770700","Copper transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94EE4]","Similar to Copper transporter 1. (Os01t0770700-00)",1,32523314,32523953,"GO:0043621;GO:0035434;GO:0005375;GO:0005515;GO:0006952;GO:0005886;GO:0006810;GO:0006811;GO:0016021;GO:0005887;GO:0034219;GO:0051119;GO:0006825;GO:0016020","protein self-association;copper ion transmembrane transport;copper ion transmembrane transporter activity;protein binding;defense response;plasma membrane;transport;ion transport;integral component of membrane;integral component of plasma membrane;carbohydrate transmembrane transport;sugar transmembrane transporter activity;copper ion transport;membrane","Interacting selectively and non-covalently with a domain within the same polypeptide. [GOC:jl];The directed movement of copper cation across a membrane. [GOC:vw];Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of a sugar from one side of the membrane to the other. A sugar is any member of a class of sweet, water-soluble, crystallizable carbohydrates, which are the monosaccharides and smaller oligosaccharides. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0198600-01",3.8133963070430903E-3,0.090737448576932,0.7857627345279291,"OS03G0198600","HOX12",118.317456823857,123.519631609255,229.290690685537,187.63730521913,"no","OS03G0198600","Homeobox-leucine zipper protein HOX12 [Source:UniProtKB/Swiss-Prot;Acc:Q10QF2]","Homeodomain-leucine zipper transcription factor, Regulation of panicle exsertion (Os03t0198600-01)",3,5180779,5182185,"GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0602800-01",3.8197312319113302E-3,0.0908174541613656,0.411138049724986,"OS04G0602800",null,568.445400314219,583.39944247456,765.360277528529,766.287367444899,"no","OS04G0602800","OSJNBa0041A02.17 protein [Source:UniProtKB/TrEMBL;Acc:Q7XTQ2]","Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGBa0105A11.22 protein. (Os04t0602800-02)",4,30416463,30424148,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0436800-01",3.8239327327577303E-3,0.0908466507396689,-0.39942708744481703,"OS10G0436800",null,1137.48737407959,1063.298162103,787.393988864802,881.152028704581,"no","OS10G0436800","Os10g0436800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XV01]","Similar to flavoprotein wrbA. (Os10t0436800-01)",10,15601210,15604281,"GO:0005737;GO:0005886;GO:0003955;GO:0010181;GO:0055114;GO:0016491","cytoplasm;plasma membrane;NAD(P)H dehydrogenase (quinone) activity;FMN binding;oxidation-reduction process;oxidoreductase activity","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone. [EC:1.6.5.2];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS01T0571100-01",3.8381048587324803E-3,0.09090060437518979,-0.8500455081452299,"OS01G0571100",null,2910.37744125892,3536.38232357975,1600.26566318259,1976.18543443788,"no","OS01G0571100","Os01g0571100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V486]","Similar to gibberellin responsive1. (Os01t0571100-01)",1,21922042,21923916]
["OS01T0685800-01",0.00383565655490728,0.09090060437518979,-0.539014695698068,"OS01G0685800",null,4340.98554912462,5164.28073040351,3192.7819008182,3349.1300739437,"no","OS01G0685800","ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q0JKB4]","Similar to ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14). (Os01t0685800-01);Similar to ATP synthase subunit beta, mitochondrial. (Os01t0685800-02)",1,28277699,28281938,"GO:0000275;GO:0006754;GO:0051103;GO:0006310;GO:0003910;GO:0003909;GO:0045261;GO:0015986;GO:0046933;GO:0046034;GO:0015992;GO:0099132;GO:0006281;GO:0016887;GO:0003677;GO:0005524;GO:0000166;GO:0032559","mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);ATP biosynthetic process;DNA ligation involved in DNA repair;DNA recombination;DNA ligase (ATP) activity;DNA ligase activity;proton-transporting ATP synthase complex, catalytic core F(1);ATP synthesis coupled proton transport;proton-transporting ATP synthase activity, rotational mechanism;ATP metabolic process;proton transport;ATP hydrolysis coupled cation transmembrane transport;DNA repair;ATPase activity;DNA binding;ATP binding;nucleotide binding;adenyl ribonucleotide binding","The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled. [GOC:mtg_sensu, PMID:10838056];The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators, ISBN:0198506732];The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair. [GOC:ai];Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:0198506732];Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m). [EC:6.5.1.1];Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+. [ISBN:0716720094];The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. [GOC:mah, PMID:10838056];The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. [ISBN:0716731363];Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism. [EC:3.6.3.14, TC:3.A.2.1.1];The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. [GOC:mah]"]
["OS04T0463000-01",3.8360113692157104E-3,0.09090060437518979,-0.9132781036064531,"OS04G0463000",null,188.138226249375,217.261056128427,92.8459505347748,122.411836913744,"no","OS04G0463000","B1358B12.16 protein [Source:UniProtKB/TrEMBL;Acc:Q6MWE1]","Serine/threonine protein kinase domain containing protein. (Os04t0463000-01)",4,23120224,23122721,"GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0643900-01",0.00383671278720061,0.09090060437518979,-0.298873667252373,"OS06G0643900",null,2128.20218376181,2166.74020447901,1688.945470539,1802.35642235028,"no","OS06G0643900","Bifunctional purple acid phosphatase 26 [Source:Projected from Arabidopsis thaliana (AT5G34850) UniProtKB/Swiss-Prot;Acc:Q949Y3]","Purple acid phosphatase (EC:3.1.3.2), Regulation of phosphate remobilization, Utilization of organic phosphorus (Os06t0643900-01)",6,26254217,26259239,"GO:0003993;GO:0016311;GO:0046872;GO:0016787;GO:0055062;GO:0005773;GO:0005829;GO:0009505","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity;phosphate ion homeostasis;vacuole;cytosol;plant-type cell wall","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Any process involved in the maintenance of an internal steady state of phosphate ions within an organism or cell. [GOC:jid, GOC:mah];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208]"]
["OS05T0176300-01",3.8416364539478704E-3,0.0909027872989227,-0.465733910459573,"OS05G0176300",null,499.434420518816,484.814554066325,355.156644295896,357.540623620706,"no","OS05G0176300","Os05g0176300 protein [Source:UniProtKB/TrEMBL;Acc:C7J2W8]","Conserved hypothetical protein. (Os05t0176300-01)",5,4578959,4579552]
["OS12T0188500-01",3.8441477215962303E-3,0.0909027872989227,-0.810331027587303,"OS12G0188500",null,961.156446018863,1074.62079500052,507.366634708423,653.53736940506,"no","OS12G0188500","Os12g0188500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7W9]","Hypothetical conserved gene. (Os12t0188500-01)",12,4447667,4451150]
["OS05T0494900-01",0.00385844169905916,0.09114746529664419,0.41810004149842805,"OS05G0494900",null,1058.22721850724,989.244226220151,1375.90502344229,1359.85820087404,"no","OS05G0494900","Os05g0494900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DH32]","SH2 motif domain containing protein. (Os05t0494900-01);Similar to GTB1 (GLOBAL TRANSCRIPTION FACTOR GROUP B1); RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator. (Os05t0494900-02)",5,24307832,24309839,"GO:0032784;GO:0006357;GO:0000991;GO:0035327;GO:0008023;GO:0050684;GO:0070827;GO:0042789;GO:0034728;GO:0006342;GO:0031491;GO:0032968;GO:0042393;GO:0006368;GO:0003700;GO:0006139;GO:0003676;GO:0003677","regulation of DNA-templated transcription, elongation;regulation of transcription from RNA polymerase II promoter;transcription factor activity, core RNA polymerase II binding;transcriptionally active chromatin;transcription elongation factor complex;regulation of mRNA processing;chromatin maintenance;mRNA transcription from RNA polymerase II promoter;nucleosome organization;chromatin silencing;nucleosome binding;positive regulation of transcription elongation from RNA polymerase II promoter;histone binding;transcription elongation from RNA polymerase II promoter;transcription factor activity, sequence-specific DNA binding;nucleobase-containing compound metabolic process;nucleic acid binding;DNA binding","Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase. [GOC:mah, GOC:txnOH];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. [GOC:txnOH];The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed. [GOC:sart, PMID:17965872];Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation. [GOC:jl];Any process that modulates the frequency, rate or extent of mRNA processing, those processes involved in the conversion of a primary mRNA transcript into a mature mRNA prior to its translation into polypeptide. [GOC:ai];The chromatin organization process that preserves chromatin in a stable functional or structural state. [GOC:mah];The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. [GOC:jl, ISBN:0321000382];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of one or more nucleosomes. [GOC:mah];Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245];Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:mah];Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS06T0702000-01",3.8634448664295103E-3,0.09114746529664419,-0.49869805710394904,"OS06G0702000",null,466.818295097179,512.606471178407,335.642542960957,357.540623620706,"no","OS06G0702000","Os06g0702000 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z8X3]","Auxin responsive SAUR protein family protein. (Os06t0702000-01)",6,29580155,29581194,"GO:0009733","response to auxin","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]"]
["OS08T0441500-01",0.0038628497431799,0.09114746529664419,-1.07105781439399,"OS08G0441500",null,2537.94225937112,1862.05844650951,953.263850211787,1141.00395734695,"no","OS08G0441500","Os08g0441500 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z9E7]","Similar to Cinnamoyl-CoA reductase. (Os08t0441500-01);Similar to cinnamoyl CoA reductase. (Os08t0441500-02)",8,21506475,21513656,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0204800-01",0.00386903638156572,0.0912089502543178,0.42712060619381903,"OS07G0204800",null,452.548740225212,440.553352739675,621.524127517818,579.293961221526,"no","OS07G0204800","Os07g0204800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3W9]","Similar to Charged multivesicular body protein 2a. (Os07t0204800-01);Non-protein coding transcript. (Os07t0204800-02)",7,5640466,5642747]
["OS01T0836600-01",0.00388896799547146,0.0914627879877675,-2.21804406282052,"OS01G0836600",null,216.540270135386,157.468758887696,26.4929349147955,53.8937820290206,"no","OS01G0836600","Os01g0836600 protein [Source:UniProtKB/TrEMBL;Acc:Q8S1S3]","ABC transporter-like domain containing protein. (Os01t0836600-01)",1,35861267,35863888,"GO:0042626;GO:0016021;GO:0005886;GO:0055085;GO:0006810;GO:0016887;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;integral component of membrane;plasma membrane;transmembrane transport;transport;ATPase activity;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0922800-01",3.8889112992720803E-3,0.0914627879877675,0.27942536607233204,"OS01G0922800","MADS51",2108.83635929271,2165.7108742156,2568.05573567802,2620.01079931894,"no","OS01G0922800","MADS-box transcription factor 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ61]","MADS-box transcription factor, Short-day flowering promoter (Os01t0922800-01)",1,40344374,40364362,"GO:0045944;GO:0000977;GO:0009908;GO:0046983;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0048576","positive regulation of transcription from RNA polymerase II promoter;RNA polymerase II regulatory region sequence-specific DNA binding;flower development;protein dimerization activity;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;positive regulation of short-day photoperiodism, flowering","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that activates, maintains or increases short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:0582015952, ISBN:0697037754, ISBN:0709408862]"]
["OS03T0684400-01",0.00389177875046144,0.0914627879877675,0.38821537614566304,"OS03G0684400","MRS2-A",643.149223157903,704.061900172752,878.13456007227,885.059576503714,"no","OS03G0684400","Magnesium transporter MRS2-A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AUK4]","Mg2+ transporter protein, CorA-like domain containing protein. (Os03t0684400-01)",3,27287853,27294356,"GO:0031969;GO:0009507;GO:0046873;GO:1903830;GO:0009536;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0015095;GO:0016020;GO:0016021;GO:0009941","chloroplast membrane;chloroplast;metal ion transmembrane transporter activity;magnesium ion transmembrane transport;plastid;metal ion transport;transport;transmembrane transport;ion transport;magnesium ion transmembrane transporter activity;membrane;integral component of membrane;chloroplast envelope","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The directed movement of magnesium ion across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:11254124];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. [GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS05T0536400-01",3.8911315111461605E-3,0.0914627879877675,0.29394052244422103,"OS05G0536400",null,1581.88208294939,1553.25936748638,1956.28865882767,1887.34558698143,"no","OS05G0536400","Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G62530) UniProtKB/Swiss-Prot;Acc:Q8VZC3]","Similar to Delta-1-pyrroline-5-carboxylate dehydrogenase. (Os05t0536400-01)",5,26634885,26640861,"GO:0016491;GO:0055114;GO:0008152;GO:0016020;GO:0016021;GO:0003842;GO:0008270;GO:0050897;GO:0009651;GO:0010133;GO:0072593;GO:0005739;GO:0009507","oxidoreductase activity;oxidation-reduction process;metabolic process;membrane;integral component of membrane;1-pyrroline-5-carboxylate dehydrogenase activity;zinc ion binding;cobalt ion binding;response to salt stress;proline catabolic process to glutamate;reactive oxygen species metabolic process;mitochondrion;chloroplast","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH + H(+). [EC:1.5.1.12];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with a cobalt (Co) ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including glutamate. [GOC:pz];The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS05T0122900-01",0.003920232608735421,0.0919827264100806,-0.466021033697788,"OS05G0122900",null,1855.11348529551,2001.07237432666,1298.50901380266,1493.20963715146,"no","OS05G0122900","BLE1 protein [Source:UniProtKB/TrEMBL;Acc:Q75L86]","BLE1 protein. (Os05t0122900-01)",5,1259271,1261993]
["OS05T0195700-01",0.003918846937673331,0.0919827264100806,0.474255071077722,"OS05G0195700",null,489.700061108162,555.002390004182,720.065038914852,731.236365920694,"no","OS05G0195700","Os05g0195700 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4N3]","Similar to Transcription factor MYBS2. (Os05t0195700-01);Similar to Transcription factor MYBS2. (Os05t0195700-02)",5,5870175,5873986,"GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0003676;GO:0008270","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;nucleic acid binding;zinc ion binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0450800-01",0.003922934423682091,0.0919827264100806,0.6795505882976121,"OS08G0450800",null,318.076056745796,279.265333575245,499.666873824795,457.05944026319,"no","OS08G0450800","Os08g0450800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J5A8]","Phosphatidylinositol-4-phosphate 5-kinase family protein. (Os08t0450800-01);Similar to predicted protein. (Os08t0450800-02)",8,22006770,22011866,"GO:0010008;GO:0046854;GO:0000285;GO:0042147;GO:0005829;GO:0046488;GO:0016307;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0000166;GO:0016740","endosome membrane;phosphatidylinositol phosphorylation;1-phosphatidylinositol-3-phosphate 5-kinase activity;retrograde transport, endosome to Golgi;cytosol;phosphatidylinositol metabolic process;phosphatidylinositol phosphate kinase activity;phosphorylation;kinase activity;metal ion binding;ATP binding;nucleotide binding;transferase activity","The lipid bilayer surrounding an endosome. [GOC:mah];The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + ADP + 2 H(+). [EC:2.7.1.150, RHEA:13612];The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. [GOC:jl, PMID:10873832, PMID:16936697];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. [EC:2.7.1.-, PMID:9759495];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0544800-01",0.00394588859763157,0.0920465000578707,0.437022465456031,"OS11G0544800",null,380.181711945955,399.380142203257,526.880736043362,528.495839832792,"no","OS11G0544800","NA","Glutamyl-tRNA(Gln) amidotransferase subunit B, Primary root development (Os11t0544800-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0702700-01",0.00394674375084481,0.0920465000578707,-0.6889887547120841,"OS01G0702700",null,287.293396813243,331.775432919819,176.033191372629,207.96807436807,"no","OS01G0702700","Os01g0702700 protein [Source:UniProtKB/TrEMBL;Acc:Q0JK18]","Similar to Transcription factor MYB86 (Myb-related protein 86) (AtMYB86) (Myb homolog 4) (AtMyb4). (Os01t0702700-01)",1,29132173,29133909,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0875300-00",0.0039404112311599,0.0920465000578707,0.636370090129687,"OS01G0875300",null,214.043323079492,185.921249461892,295.429983974868,326.280241227639,"no","OS01G0875300","Os01g0875300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VB72]","Similar to Universal stress protein family protein. (Os01t0875300-00)",1,37982651,37985429,"GO:0006950","response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS07T0170016-01",0.00394389829263934,0.0920465000578707,1.74616386355341,"OS07G0170016",null,109.060169378599,79.2584302826051,240.023446419754,391.720248797276,"no","OS07G0170016","Os07g0170016 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X2N4]","Hypothetical gene. (Os07t0170016-01)",7,3713183,3714162]
["OS07T0542600-01",0.00394357277878378,0.0920465000578707,-0.7267322884978971,"OS07G0542600",null,1262.33840975087,1287.79364704136,674.708942536696,866.262012467599,"no","OS07G0542600","Os07g0542600 protein [Source:UniProtKB/TrEMBL;Acc:B7FA79]","Similar to receptor-like protein kinase RK20-1. (Os07t0542600-01)",7,21441037,21444823,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0489300-01",0.00394166440652317,0.0920465000578707,0.565606539335167,"OS08G0489300",null,698.971503908117,582.195097264482,978.741329441423,917.397546708139,"no","OS08G0489300","Os08g0489300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZBQ9]","Methyladenine glycosylase domain containing protein. (Os08t0489300-01);Similar to GMP synthase. (Os08t0489300-02);Similar to GMP synthase. (Os08t0489300-03)",8,24186670,24189314,"GO:0016020;GO:0016021;GO:0008725;GO:0006284;GO:0006281;GO:0003824","membrane;integral component of membrane;DNA-3-methyladenine glycosylase activity;base-excision repair;DNA repair;catalytic activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site. [EC:3.2.2.20, GOC:elh, PMID:10872450, PMID:9224623];In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. [ISBN:0815316194];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0612300-01",0.00393475814777554,0.0920465000578707,-0.606297319676378,"OS12G0612300",null,288.448859197602,314.9750606036,197.092423482887,199.284937755803,"no","OS12G0612300","Os12g0612300 protein [Source:UniProtKB/TrEMBL;Acc:Q2QMA1]","Conserved hypothetical protein. (Os12t0612300-01)",12,25894325,25898041]
["OS04T0527400-03",0.00395557696584505,0.0921821414649107,-0.403208960127372,"OS04G0527400",null,1229.43025146023,1407.44863605913,1004.01549448035,989.924991005856,"no","OS04G0527400","OSJNBa0038O10.19 protein [Source:UniProtKB/TrEMBL;Acc:Q7XKI9]","BRO1 domain containing protein. (Os04t0527400-01);BRO1 domain containing protein. (Os04t0527400-02);BRO1 domain containing protein. (Os04t0527400-03);BRO1 domain containing protein. (Os04t0527400-04)",4,26364147,26368378]
["OS09T0491100-03",0.00396895706737475,0.0924234575628304,-1.33298992916245,"OS09G0491100","BGLU30",534.242785363983,462.18545402379,178.761255919713,216.765688863459,"no","OS09G0491100","Beta-glucosidase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q0J0N4]","Similar to Beta-primeverosidase (EC 3.2.1.149). (Os09t0491100-01);Similar to Beta-glucosidase isozyme 2. (Os09t0491100-02);Similar to Beta-glucosidase 30. (Os09t0491100-03)",9,18905351,18908421,"GO:0004553;GO:0005975;GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0016787","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0588000-01",0.0039739680220261,0.0924696656579903,-0.27427995163838603,"OS07G0588000",null,3091.39713761953,2996.38039678784,2535.85746847537,2497.89993059602,"no","OS07G0588000","Os07g0588000 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIP6]","Interferon-related developmental regulator domain containing protein. (Os07t0588000-01)",7,23925954,23931219]
["OS01T0868600-01",0.00398322522419032,0.0926037105404207,-1.11883261550554,"OS01G0868600",null,312.910953263829,287.183143491517,112.206082675901,164.117007563603,"no","OS01G0868600","Os01g0868600 protein [Source:UniProtKB/TrEMBL;Acc:Q8S1N5]","Hypothetical conserved gene. (Os01t0868600-01)",1,37641515,37643418,"GO:0030163;GO:0006508;GO:0004190;GO:0016020;GO:0016021","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0286500-01",0.00399380691346336,0.0926037105404207,-1.15747492846831,"OS03G0286500",null,1449.92555724248,1689.21842519771,574.47087867022,832.796313945235,"no","OS03G0286500","Probable RNA-binding protein ARP1 [Source:Projected from Arabidopsis thaliana (AT3G54770) UniProtKB/Swiss-Prot;Acc:Q9M1S3]","Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2. (Os03t0286500-01)",3,9878106,9880793,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS04T0636750-00",3.9948838207735805E-3,0.0926037105404207,-0.281446998314253,"OS04G0636750",null,5067.64685121062,5194.58953127964,4155.18906046853,4288.22379499516,"no","OS04G0636750","Os04g0636750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFN1]","Hypothetical gene. (Os04t0636750-00)",4,32383989,32384679]
["OS09T0564700-00",0.003990713500765151,0.0926037105404207,-2.08734901134443,"OS09G0564700",null,47.905842268083,42.3496456674594,7.36395183539726,13.874309212546,"no","OS09G0564700","Os09g0564700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRA0]","Similar to Vignain. (Os09t0564700-00)",9,22455481,22457503,"GO:0006508;GO:0016787;GO:0008234;GO:0008233","proteolysis;hydrolase activity;cysteine-type peptidase activity;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS12T0502000-01",0.003986375181653031,0.0926037105404207,-0.377610059642268,"OS12G0502000",null,3667.98166755032,4088.47832021438,2883.3340706058,3086.90334531241,"no","OS12G0502000","Protein SPIRAL1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q2QQ99]","Similar to nitrilase-associated protein. (Os12t0502000-01)",12,19121770,19124386,"GO:0005874;GO:0003700;GO:0005634;GO:0006355","microtubule;transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated","Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS05T0311000-02",4.00205912287543E-3,0.09262947751673489,-0.422451611151947,"OS05G0311000",null,2343.52927851976,2700.91353575444,1896.95530433456,1866.98386853712,"no","OS05G0311000","Coatomer subunit delta-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0DJ99]","Clathrin adaptor, mu subunit, C-terminal domain containing protein. (Os05t0311000-01);Similar to delta-COP. (Os05t0311000-02)",5,14191542,14197286,"GO:0031410;GO:0030663;GO:0016192;GO:0006890;GO:0015031;GO:0005737;GO:0030126;GO:0006810;GO:0016020;GO:0005794;GO:0000139","cytoplasmic vesicle;COPI-coated vesicle membrane;vesicle-mediated transport;retrograde vesicle-mediated transport, Golgi to ER;protein transport;cytoplasm;COPI vesicle coat;transport;membrane;Golgi apparatus;Golgi membrane","A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The lipid bilayer surrounding a COPI-coated vesicle. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. [GOC:mah, PMID:11252894];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah]"]
["OS06T0538400-01",0.0039990485047239,0.09262947751673489,0.773607345359346,"OS06G0538400",null,110.079423298025,102.933026341046,186.359667748671,177.79342486057,"no","OS06G0538400","Os06g0538400 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z6U2]","Conserved hypothetical protein. (Os06t0538400-01)",6,20178124,20179043]
["OS03T0231700-01",0.00401886316037583,0.0926748557575644,-1.05301881369214,"OS03G0231700",null,438.198816853493,618.133902597829,244.829447926442,264.279210503973,"no","OS03G0231700","Os03g0231700 protein [Source:UniProtKB/TrEMBL;Acc:Q10PK5]","Similar to squalene monooxygenase. (Os03t0231700-01);Similar to Squalene monooxygenase 2 (EC 1.14.99.7). (Os03t0231700-02)",3,6950861,6957390,"GO:0004506;GO:0016126;GO:0005783;GO:0050660;GO:0004497;GO:0016491;GO:0055114;GO:0016021;GO:0016020","squalene monooxygenase activity;sterol biosynthetic process;endoplasmic reticulum;flavin adenine dinucleotide binding;monooxygenase activity;oxidoreductase activity;oxidation-reduction process;integral component of membrane;membrane","Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). [RHEA:25285];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0664650-00",0.0040188506222084,0.0926748557575644,-1.13627274296604,"OS03G0664650",null,95.8098684260585,133.812934243359,52.6880736043362,51.7750083385175,"no","OS03G0664650","Os03g0664650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W115]","Hypothetical gene. (Os03t0664650-00)",3,26114970,26115966]
["OS03T0850900-01",4.02208956108073E-3,0.0926748557575644,-0.49142928560388505,"OS03G0850900",null,785.013034375737,802.276684939787,517.194716665956,611.876270095919,"no","OS03G0850900","Chemocyanin, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q851Z0]","Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin). (Os03t0850900-01)",3,35820760,35821517,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS08T0545700-01",0.004022035243430881,0.0926748557575644,1.08391543449622,"OS08G0545700",null,59.1167273267169,77.1997697557842,162.942746146743,126.018416522052,"no","OS08G0545700","Os08g0545700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIZ8]","Similar to TraB protein-related. (Os08t0545700-01)",8,27329441,27331356]
["OS10T0397400-01",0.00402221978052273,0.0926748557575644,-0.35612924598141904,"OS10G0397400",null,9324.13485491046,10481.6700723087,7628.06221182779,7845.37909371007,"no","OS10G0397400","Os10g0397400 protein [Source:UniProtKB/TrEMBL;Acc:Q0IXV0]","Dim/dwf1 protein, Cell elongation protein DIMINUTO/Dwarf1, Brassinosteroid (BR) biosynthesis (Os10t0397400-01)",10,13359632,13361009,"GO:0008202;GO:0016614;GO:0050660;GO:0016491;GO:0055114;GO:0003824;GO:0016020;GO:0016021","steroid metabolic process;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;catalytic activity;membrane;integral component of membrane","The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0114800-01",4.0101184463417604E-3,0.0926748557575644,0.44865979911858506,"OS12G0114800","LTP110-B",786.651683148492,797.507439122174,1019.38887035451,1142.62691208354,"no","OS12G0114800","Non-specific lipid-transfer protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q2QYL3]","Similar to Lipid transfer protein. (Os12t0114800-01)",12,727802,728559,"GO:0006869;GO:0016020;GO:0006952;GO:0008289;GO:0006810","lipid transport;membrane;defense response;lipid binding;transport","The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with a lipid. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS11T0249900-01",4.03807084967449E-3,0.0929699627726112,0.507023068082023,"OS11G0249900",null,636.18737826352,548.144826198289,809.590652073484,873.481331562901,"no","OS11G0249900","Os11g0249900 protein [Source:UniProtKB/TrEMBL;Acc:Q0ITI9]","Protein kinase-like domain containing protein. (Os11t0249900-01);Similar to Protein kinase domain containing protein, expressed. (Os11t0249900-02)",11,8097055,8099539,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0442400-01",4.04597313856319E-3,0.0930817555191134,1.40448796016204,"OS09G0442400",null,22.4235862273754,23.6745960584405,64.3965344052998,57.6363300372176,"no","OS09G0442400","Os09g0442400 protein [Source:UniProtKB/TrEMBL;Acc:Q67UU1]","t-snare domain containing protein. (Os09t0442400-01)",9,16444342,16447967,"GO:0015969;GO:0017148;GO:0006952;GO:0030598;GO:0016787;GO:0016020;GO:0016021","guanosine tetraphosphate metabolic process;negative regulation of translation;defense response;rRNA N-glycosylase activity;hydrolase activity;membrane;integral component of membrane","The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. [GOC:ai];Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species. [EC:3.2.2.22, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0541325-00",4.0592543978930995E-3,0.0931933842868745,0.519629623891496,"OS02G0541325",null,1332.09847413559,1152.84989501971,1874.32943322092,1688.06064922563,"no","OS02G0541325","Os02g0541325 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VK43]","Similar to Serine decarboxylase. (Os02t0541325-00)",2,20109369,20112225,"GO:0016831;GO:0030170;GO:0019752;GO:0016829;GO:0003824;GO:0006580;GO:0005829;GO:0005886","carboxy-lyase activity;pyridoxal phosphate binding;carboxylic acid metabolic process;lyase activity;catalytic activity;ethanolamine metabolic process;cytosol;plasma membrane","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). [CHEBI:16000, GOC:jl, ISBN:01928006X];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS06T0132100-03",4.05997625313662E-3,0.0931933842868745,-0.396890824287072,"OS06G0132100",null,2055.39137138935,2175.16803382627,1506.83060562901,1706.2509909294,"no","OS06G0132100","Os06g0132100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SNM0]","Transmembrane receptor, eukaryota domain containing protein. (Os06t0132100-01);Transmembrane receptor, eukaryota domain containing protein. (Os06t0132100-03)",6,1728136,1729996,"GO:0016021;GO:0016020;GO:0005768;GO:0005794;GO:0005802","integral component of membrane;membrane;endosome;Golgi apparatus;trans-Golgi network","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. [GOC:vw, ISBN:0815316194]"]
["OS11T0123500-01",0.00405803444062629,0.0931933842868745,-0.47520309171558905,"OS11G0123500",null,658.893162498424,711.762057668409,458.468892689398,527.533207066647,"no","OS11G0123500","Os11g0123500 protein [Source:UniProtKB/TrEMBL;Acc:Q2RB64]","Snf7 family protein. (Os11t0123500-01)",11,1078104,1082412,"GO:0007034;GO:0005622","vacuolar transport;intracellular","The directed movement of substances into, out of or within a vacuole. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS02T0215900-01",0.00407222869629459,0.0933343819423798,0.7286485475962651,"OS02G0215900",null,160.022865349906,132.783603979949,253.683317354211,231.522207098654,"no","OS02G0215900","Os02g0215900 protein [Source:UniProtKB/TrEMBL;Acc:Q0E2T2]","Protein kinase, catalytic domain domain containing protein. (Os02t0215900-01)",2,6488457,6490577,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0643500-00",0.00407171276725466,0.0933343819423798,-3.34959635654569,"OS04G0643500",null,31.5968715022108,38.0852197461869,1.95141013349393,4.88443474891674,"no","OS04G0643500","OSJNBa0033G05.6 protein [Source:UniProtKB/TrEMBL;Acc:Q7X6V7]","Similar to H0306F03.8 protein. (Os04t0643500-00)",4,32747192,32750831,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS12T0581900-01",0.004083255179562741,0.0935169507091461,0.43874779070902403,"OS12G0581900",null,3554.95024173802,3054.45016980253,4488.41768586095,4470.14441736707,"no","OS12G0581900","Os12g0581900 protein [Source:UniProtKB/TrEMBL;Acc:Q2QN25]","Zinc finger, C2H2-like domain containing protein. (Os12t0581900-01)",12,24145596,24146549,"GO:0005634;GO:0003676","nucleus;nucleic acid binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS01T0267900-01",0.0041009577419262,0.0937899506715255,-0.29357094440526904,"OS01G0267900","CAM1-2",4356.25083717546,4378.3041518679,3419.78446339427,3706.56512511443,"no","OS01G0267900","Calmodulin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q0JNS6]","Similar to Calmodulin NtCaM3 (Calmodulin NtCaM4) (Calmodulin NtCaM5) (Calmodulin NtCaM6) (Calmodulin NtCaM7) (Calmodulin NtCaM8) (Calmodulin NtCaM11) (Calmodulin NtCaM12). (Os01t0267900-01)",1,9195546,9198962,"GO:0005509;GO:0046872","calcium ion binding;metal ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS03T0851700-01",0.00410131494164566,0.0937899506715255,0.49984424852961806,"OS03G0851700",null,340.430809088335,394.233490886205,511.341103904619,527.518952883008,"no","OS03G0851700","Ankyrin repeat domain protein 2, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q851Y1]","Similar to TGB12K interacting protein 3. (Os03t0851700-01)",3,35861615,35864088,"GO:0030941;GO:0045036;GO:0031359","chloroplast targeting sequence binding;protein targeting to chloroplast;integral component of chloroplast outer membrane","Interacting selectively and non-covalently with a chloroplast targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the chloroplast. [GOC:mah];The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:0716731363];The component of the chloroplast outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah]"]
["OS05T0144100-01",4.1174402875150205E-3,0.0940882839672093,0.480199370297237,"OS05G0144100",null,934.655844113783,818.317559411313,1282.79097962818,1162.49547024219,"no","OS05G0144100","Os05g0144100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DKT7]","WD40 repeat-like domain containing protein. (Os05t0144100-01)",5,2537632,2540611]
["OS01T0232500-02",0.004129870930084651,0.0943018061703633,-0.7996206512028281,"OS01G0232500",null,293.149038980474,289.47242611533,160.218182378081,174.49797711225,"no","OS01G0232500","Os01g0232500 protein [Source:UniProtKB/TrEMBL;Acc:Q5NAY5]","Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os01t0232500-01);Similar to PFU3/UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase. (Os01t0232500-02)",1,7340717,7345302,"GO:0031625;GO:0061630;GO:0005737;GO:0016567;GO:0006886;GO:0005622","ubiquitin protein ligase binding;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;intracellular protein transport;intracellular","Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS06T0625400-01",0.004137611755739861,0.0943375480308689,0.288411093155345,"OS06G0625400",null,2336.06386329831,2338.41700221582,2756.77520413979,2952.14242041219,"no","OS06G0625400","Stromal processing peptidase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G42390) UniProtKB/Swiss-Prot;Acc:Q9FIH8]","Similar to Metalloendopeptidase. (Os06t0625400-01);Similar to cDNA clone:J013073O18, full insert sequence. (Os06t0625400-02)",6,25200331,25210590,"GO:0009570;GO:0008237;GO:0009536;GO:0009507;GO:0046872;GO:0006508;GO:0016787;GO:0008233;GO:0003824;GO:0004222;GO:0016485","chloroplast stroma;metallopeptidase activity;plastid;chloroplast;metal ion binding;proteolysis;hydrolase activity;peptidase activity;catalytic activity;metalloendopeptidase activity;protein processing","The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein. [GOC:curators, GOC:jl, GOC:jsg]"]
["OS08T0130900-01",4.13466881928527E-3,0.0943375480308689,-0.43490907142515406,"OS08G0130900",null,605.436828139136,644.360744894945,483.949713106496,440.57601435229,"no","OS08G0130900","Hydroxyproline O-galactosyltransferase GALT2 [Source:Projected from Arabidopsis thaliana (AT4G21060) UniProtKB/Swiss-Prot;Acc:A7XDQ9]","Similar to galactosyltransferase family. (Os08t0130900-01)",8,1744492,1749089,"GO:0006486;GO:0008378;GO:0030246;GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0016740;GO:0035250;GO:1990714;GO:0010405;GO:0018258;GO:0080147;GO:0012505","protein glycosylation;galactosyltransferase activity;carbohydrate binding;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;transferase activity;UDP-galactosyltransferase activity;hydroxyproline O-galactosyltransferase activity;arabinogalactan protein metabolic process;protein O-linked glycosylation via hydroxyproline;root hair cell development;endomembrane system","A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr];Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the transfer of a galactose group from UDP-galactose to an acceptor molecule. [http://www.chem.qmul.ac.uk/iubmb/enzyme/reaction/polysacc/UDPsugar.html];Catalysis of the transfer of galactose from UDP-galactose to hydroxyproline residues present in the peptide backbone. [PMID:25600942];The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein of highly varying length and domain complexity. These are O-glycosylated at one or more hydroxyproline residues by arabinogalactan (AG) type II groups, which consist of (1->3)-beta-galactan and (1->6)-beta-linked galactan chains connected to each other by (1->3,1->6)-linked branch points, O-3 and O-6 positions substituted with terminal arabinosyl residues. Also, rhamnose, fucose, glucuronic and galacturonic acid can be present in the glycan structures. [GOC:tair_curators];The glycosylation of proteins via 04 atom of hydroxyproline to form O4-glycosyl-L-hydroxyproline; the most common form is arabinofuranosyl-4-proline. [RESID:AA0212];The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state. [PMID:19675148];A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. [GOC:lh]"]
["OS02T0610400-01",0.004142442846524191,0.0943560113229958,0.355595997954931,"OS02G0610400",null,921.728952901639,887.615086977428,1209.24510702519,1105.83602715475,"no","OS02G0610400","Os02g0610400 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6X2]","Lupus La protein family protein. (Os02t0610400-01)",2,23980588,23984884,"GO:0030529;GO:0003723;GO:0006396;GO:0005634;GO:0003676","intracellular ribonucleoprotein complex;RNA binding;RNA processing;nucleus;nucleic acid binding","An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS05T0112000-01",0.004146663766215051,0.0943560113229958,-0.430899296121583,"OS05G0112000","XB3",1184.06464543816,1109.28377649086,880.402804323379,820.801322751545,"no","OS05G0112000","E3 ubiquitin-protein ligase XB3 [Source:UniProtKB/Swiss-Prot;Acc:Q65XV2]","E3 ubiquitin ligase, XA21-mediated disease resistance (Os05t0112000-01);Similar to Receptor-like kinase Xa21-binding protein 3. (Os05t0112000-04);Similar to Receptor-like kinase Xa21-binding protein 3. (Os05t0112000-05)",5,640321,643316,"GO:0004842;GO:0042742;GO:0005515;GO:0006952;GO:0016567;GO:0046872;GO:0016740;GO:0051865","ubiquitin-protein transferase activity;defense response to bacterium;protein binding;defense response;protein ubiquitination;metal ion binding;transferase activity;protein autoubiquitination","Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink. [GOC:ai]"]
["OS05T0256500-00",4.1476866721256705E-3,0.0943560113229958,-0.369553541594743,"OS05G0256500",null,2029.85301783589,2136.71655666417,1518.19745498402,1706.81901699899,"no","OS05G0256500","Os05g0256500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WK53]","Protein kinase, catalytic domain domain containing protein. (Os05t0256500-00)",5,9517563,9527490,"GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0700500-01",0.00415935993845503,0.0945511643152366,0.33608995186003904,"OS11G0700500","MYBAS1",6247.12762438714,5829.62594956427,7969.18342167755,7275.673803719,"no","OS11G0700500","Myb-related protein MYBAS1 [Source:UniProtKB/Swiss-Prot;Acc:Q53NK6]","Similar to Snapdragon myb protein 305 homolog. (Os11t0700500-01)",11,28703901,28705306,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677;GO:0006355;GO:0006351","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0641700-00",4.1639009207804995E-3,0.0945647245121996,-0.92584775722139,"OS04G0641700","BHLH154",150.849580075071,162.634181618852,70.2507648057816,94.7580341289848,"no","OS04G0641700","Transcription factor ILI1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X742]","Similar to H0423H10.4 protein. (Os04t0641700-00)",4,32657307,32658183,"GO:0009741;GO:0040008;GO:0005515;GO:0046983;GO:0006355;GO:0006351;GO:0009826","response to brassinosteroid;regulation of growth;protein binding;protein dimerization activity;regulation of transcription, DNA-templated;transcription, DNA-templated;unidimensional cell growth","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. [GOC:jl];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. [ISBN:0943088399]"]
["OS07T0604000-02",4.1661468706932605E-3,0.0945647245121996,0.40277315259433905,"OS07G0604000",null,1222.73714496335,1282.33815247643,1548.94800618737,1762.87855403526,"no","OS07G0604000","Probable 6-phosphogluconolactonase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z4H0]","Similar to 6-phosphogluconolactonase-like protein. (Os07t0604000-01);Similar to 6-phosphogluconolactonase-like protein. (Os07t0604000-02)",7,24736930,24742048,"GO:0017057;GO:0006098;GO:0005975;GO:0005737;GO:0016787;GO:0009051","6-phosphogluconolactonase activity;pentose-phosphate shunt;carbohydrate metabolic process;cytoplasm;hydrolase activity;pentose-phosphate shunt, oxidative branch","Catalysis of the reaction: 6-O-phosphono-D-glucono-1,5-lactone + H(2)O = 6-phospho-D-gluconate + H(+). [EC:3.1.1.31, RHEA:12559];The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2). [ISBN:0198506732, MetaCyc:OXIDATIVEPENT-PWY]"]
["OS10T0213100-01",0.00417171393439319,0.0946207899952343,-0.42534671589090206,"OS10G0213100",null,790.8146308461,819.549759141826,639.284350752398,559.889192652784,"no","OS10G0213100","Os10g0213100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSQ5]","Similar to Gamma-aminobutyrate transaminase subunit isozyme 3 (EC 2.6.1.19). (Os10t0213100-01)",10,8035237,8038115,"GO:0030170;GO:0008483;GO:0003824","pyridoxal phosphate binding;transaminase activity;catalytic activity","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS09T0540800-00",0.00417608832271863,0.0946497406793023,-0.9423810217831391,"OS09G0540800",null,126.387486008843,119.402310555613,57.566598938071,70.3358603844011,"no","OS09G0540800","Os09g0540800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XR34]","Basic leucine zipper (bZIP)-containing transcription factor, Promotion of flowering (Os09t0540800-01)",9,21292024,21293396,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS02T0276500-01",0.004184275672381481,0.0946815892184538,0.522772885390768,"OS02G0276500","VTE1",940.77136763034,1122.99931738081,1450.87343425274,1514.17477216419,"no","OS02G0276500","Probable tocopherol cyclase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6K7V6]","Similar to Tocopherol cyclase. (Os02t0276500-01)",2,10155843,10164739,"GO:0010189;GO:0006979;GO:0009536;GO:0009507;GO:0010287;GO:0009651;GO:0009976;GO:0006631;GO:0009266;GO:0009644;GO:0009915;GO:0015994;GO:0016122;GO:0031347;GO:0009534;GO:0009941","vitamin E biosynthetic process;response to oxidative stress;plastid;chloroplast;plastoglobule;response to salt stress;tocopherol cyclase activity;fatty acid metabolic process;response to temperature stimulus;response to high light intensity;phloem sucrose loading;chlorophyll metabolic process;xanthophyll metabolic process;regulation of defense response;chloroplast thylakoid;chloroplast envelope","The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Catalysis of the reaction: alkene group + alcohol group on same molecule = cyclic ether. Substrates are 2-methyl-6-phytyl-1,4- hydroquinone (forms delta-tocopherol) and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (forms gamma-tocopherol). [PMID:12213958];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. [GOC:hb];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:go_curators];The process of loading sucrose into the sieve tube or companion cell of the phloem for long distance transport from source to sink. [GOC:sm];The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl];The chemical reactions and pathways involving xanthophylls, oxygen-containing carotenoids. [ISBN:0198547684];Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS02T0744700-02",0.004186872792459551,0.0946815892184538,2.11049388301736,"OS02G0744700",null,98.666376857876,51.4109678296019,265.549391697927,382.543266422407,"no","OS02G0744700","Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:Q0DXM0]","Similar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21). (Os02t0744700-01);Similar to Soluble starch synthase 2-2, chloroplastic/amyloplastic. (Os02t0744700-02)",2,31233292,31238210,"GO:0009501;GO:0019252;GO:0004373;GO:0009507;GO:0016757;GO:0033201;GO:0009011;GO:0009536;GO:0016740","amyloplast;starch biosynthetic process;glycogen (starch) synthase activity;chloroplast;transferase activity, transferring glycosyl groups;alpha-1,4-glucan synthase activity;starch synthase activity;plastid;transferase activity","A plastid whose main function is to synthesize and store starch. [ISBN:0140514031];The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.11];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: RDP-glucose + [alpha-D-glucosyl-(1,4)]n = RDP + [alpha-D-glucosyl-(1,4)]n+1, where RDP is ADP or UDP. [PMID:17472966];Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.21];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0468600-01",0.00418702744103132,0.0946815892184538,"-Inf","OS04G0468600",null,131.11447787747,38.5027212566782,0,0,"no","OS04G0468600","Os04g0468600 protein [Source:UniProtKB/TrEMBL;Acc:B7E663]","Hypothetical conserved gene. (Os04t0468600-01);Heavy metal transport/detoxification protein domain containing protein. (Os04t0468600-02);Heavy metal transport/detoxification protein domain containing protein. (Os04t0468600-03);Similar to cDNA clone:006-303-A07, full insert sequence. (Os04t0468600-05);Similar to cDNA clone:006-303-A07, full insert sequence. (Os04t0468600-06)",4,23408498,23410250,"GO:0046916;GO:0030001;GO:0046914;GO:0005737","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS12T0548401-01",4.18988965119631E-3,0.0946815892184538,0.753644663398602,"OS12G0548401",null,1280.16901458999,1194.10816338945,1829.69106937898,2342.05628405795,"no","OS12G0548401","Os12g0548401 protein [Source:UniProtKB/TrEMBL;Acc:Q2QNZ6]","Similar to Proteinase inhibitor. (Os12t0548401-01)",12,22193325,22193831,"GO:0009611;GO:0004867;GO:0010951","response to wounding;serine-type endopeptidase inhibitor activity;negative regulation of endopeptidase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. [GOC:ai];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb]"]
["OS08T0427500-01",0.00419780964392389,0.094790451028206,0.412379087303104,"OS08G0427500",null,567.724433120368,594.952892251244,811.786615533476,735.595873186862,"no","OS08G0427500","DNA repair protein RAD4 [Source:Projected from Arabidopsis thaliana (AT5G16630) UniProtKB/Swiss-Prot;Acc:Q8W489]","DNA repair protein Rad4 family protein. (Os08t0427500-01)",8,20559024,20566198,"GO:0003684;GO:0005737;GO:0006289;GO:0005634;GO:0006298;GO:0003677;GO:0003697;GO:0000111;GO:0071942;GO:0009507","damaged DNA binding;cytoplasm;nucleotide-excision repair;nucleus;mismatch repair;DNA binding;single-stranded DNA binding;nucleotide-excision repair factor 2 complex;XPC complex;chloroplast","Interacting selectively and non-covalently with damaged DNA. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). [PMID:10197977];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:0198506732, PMID:11687886];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with single-stranded DNA. [GOC:elh, GOC:vw, PMID:22976174];One of several protein complexes involved in nucleotide-excision repair; possesses damaged DNA binding activity. In S. cerevisiae, it is composed of Rad4p and Rad23p. [PMID:10915862];A nucleotide-excision repair complex that is involved in damage sensing during global genome nucleotide excision repair (GG-NER). It is part of the pre-incision (or initial recognition) complex bound to sites of DNA damage. In human, it is composed of XPC, RAD23B and CETN2. [PMID:11279143, PMID:15964821, PMID:19941824];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS06T0711100-02",4.20457359801655E-3,0.0948730668881843,-0.692969959196144,"OS06G0711100",null,329.187375104722,329.007834461088,199.105761695296,208.04005162604,"no","OS06G0711100","Os06g0711100 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9F9]","Conserved hypothetical protein. (Os06t0711100-01);Conserved hypothetical protein. (Os06t0711100-02)",6,30069689,30073756]
["OS12T0173366-01",0.00421613215395956,0.0950636675776918,-0.70315007910944,"OS12G0173366",null,548.358608651271,581.694335021042,305.745564054198,388.366392771862,"no","OS12G0173366","Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q2QX17]","Preprotein translocase Sec, Sec61-beta subunit, eukarya domain containing protein. (Os12t0173366-01)",12,3718814,3720267,"GO:0031205;GO:0005784;GO:0031204;GO:0006616;GO:0005086;GO:0015450;GO:0015031;GO:0005783;GO:0043547;GO:0006886;GO:0006810;GO:0016020;GO:0016021","endoplasmic reticulum Sec complex;Sec61 translocon complex;posttranslational protein targeting to membrane, translocation;SRP-dependent cotranslational protein targeting to membrane, translocation;ARF guanyl-nucleotide exchange factor activity;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;protein transport;endoplasmic reticulum;positive regulation of GTPase activity;intracellular protein transport;transport;membrane;integral component of membrane","An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex. [GOC:mtg_sensu, PMID:12158317, PMID:14617809];A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events. [GOC:mah, PMID:18166647];The process in which a protein translocates through the ER membrane posttranslationally. [PMID:12518317, PMID:8707814];The process during cotranslational membrane targeting wherein proteins move across a membrane. SRP and its receptor initiate the transfer of the nascent chain across the endoplasmic reticulum (ER) membrane; they then dissociate from the chain, which is transferred to a set of transmembrane proteins, collectively called the translocon. Once the nascent chain translocon complex is assembled, the elongating chain passes directly from the large ribosomal subunit into the centers of the translocon, a protein-lined channel within the membrane. The growing chain is never exposed to the cytosol and does not fold until it reaches the ER lumen. [ISBN:0716731363];Stimulates the exchange of guanyl nucleotides associated with the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:mah];Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated. [GOC:mtg_transport, ISBN:0815340729];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0106000-01",0.00422557860050123,0.0951791812818649,-1.47965477286445,"OS07G0106000",null,69.0851238358025,90.5099667271878,32.1729950043746,25.0537517471608,"no","OS07G0106000","Os07g0106000 protein [Source:UniProtKB/TrEMBL;Acc:Q7XAL0]","Metallophosphoesterase domain containing protein. (Os07t0106000-01);Similar to predicted protein. (Os07t0106000-02)",7,335232,343705,"GO:0016020;GO:0016021;GO:0016787","membrane;integral component of membrane;hydrolase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0166700-01",0.00422748589288723,0.0951791812818649,0.34584424431221905,"OS07G0166700",null,1274.72330405939,1324.61610271074,1595.91529333104,1707.57079498585,"no","OS07G0166700","Os07g0166700 protein [Source:UniProtKB/TrEMBL;Acc:Q7F0P5]","Similar to Transmembrane protein kinase. (Os07t0166700-01)",7,3583172,3588346,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0794400-01",0.00423297431397354,0.09523257086930739,2.85976489151019,"OS01G0794400",null,7.1347774359830805,3.08799079023137,30.246857069156,43.9599127402507,"no","OS01G0794400","Probable nucleoredoxin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0JIL1]","Thioredoxin domain 2 containing protein. (Os01t0794400-01)",1,33642080,33650929,"GO:0047134;GO:0004791;GO:0005737;GO:0005623;GO:0045454;GO:0055114;GO:0016491;GO:0098869","protein-disulfide reductase activity;thioredoxin-disulfide reductase activity;cytoplasm;cell;cell redox homeostasis;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification","Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. [EC:1.8.1.8, MetaCyc:1.6.4.4-RXN];Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS02T0829500-03",0.004255470929539561,0.0955276618951452,0.75465019671522,"OS02G0829500",null,391.14912957921,365.253492985353,653.53893644523,622.680549583343,"no","OS02G0829500","Metallo-beta-lactamase-like [Source:UniProtKB/TrEMBL;Acc:Q6K9T9]","Beta-lactamase-like domain containing protein. (Os02t0829500-01);Beta-lactamase-like domain containing protein. (Os02t0829500-02);Similar to Zn-dependent hydrolases, including glyoxylases. (Os02t0829500-03)",2,35660658,35663577,"GO:0019904;GO:0046685;GO:0016787","protein domain specific binding;response to arsenic-containing substance;hydrolase activity","Interacting selectively and non-covalently with a specific domain of a protein. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. [GOC:hjd, ISBN:0721662544];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0621500-01",0.00424971233772637,0.0955276618951452,0.44679462865365105,"OS07G0621500",null,532.050545940452,471.433260641989,711.288993658539,656.46803025441,"no","OS07G0621500","Os07g0621500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X951]","Similar to predicted protein. (Os07t0621500-01)",7,25683470,25688015,"GO:0000151;GO:0032436;GO:0031624;GO:0005730;GO:0000209;GO:0042787;GO:0061630;GO:0003723;GO:0004004;GO:0005737;GO:0004386;GO:0046872;GO:0016787;GO:0003676;GO:0005524;GO:0000166;GO:0006396","ubiquitin ligase complex;positive regulation of proteasomal ubiquitin-dependent protein catabolic process;ubiquitin conjugating enzyme binding;nucleolus;protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;RNA binding;ATP-dependent RNA helicase activity;cytoplasm;helicase activity;metal ion binding;hydrolase activity;nucleic acid binding;ATP binding;nucleotide binding;RNA processing","A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex. [GOC:jh2, PMID:9529603];Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:mah];Interacting selectively and non-covalently with a ubiquitin conjugating enzyme, any of the E2 proteins. [GOC:vp];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah]"]
["OS12T0597000-01",0.00425344024368821,0.0955276618951452,-0.31628022556475,"OS12G0597000","CBL2",1823.4044725603,1899.65059646622,1435.55710691789,1554.56982825684,"no","OS12G0597000","Calcineurin B-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3HRP5]","Similar to Calcineurin B-like protein 2 (SOS3-like calcium binding protein 1). (Os12t0597000-01)",12,25063210,25068208,"GO:0005773;GO:0005509;GO:0046872;GO:0032578;GO:0016020","vacuole;calcium ion binding;metal ion binding;aleurone grain membrane;membrane","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The lipid bilayer surrounding an aleurone grain. [GOC:ecd];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0935800-01",0.004259172956090441,0.0955405669269274,-1.5981754188878798,"OS01G0935800",null,354.136066605297,541.891225945671,122.441740283544,173.511090837502,"no","OS01G0935800","Os01g0935800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCW0]","Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1. (Os01t0935800-01)",1,41079487,41080890,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0581366-00",4.2710561808367905E-3,0.0957368367108771,-0.42167989979573706,"OS07G0581366",null,680.271836134398,646.42088963615,490.390642538873,500.058201613754,"no","OS07G0581366","Os07g0581366 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X8J6]","Zinc finger, C2H2 domain containing protein. (Os07t0581366-00)",7,23540795,23543383,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0245500-01",0.004275526864710191,0.09576678648872859,-0.98102179588039,"OS03G0245500",null,920.68147037822,1009.03496614592,407.844717900232,569.789759457192,"no","OS03G0245500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P63]","Curculin-like (mannose-binding) lectin domain containing protein. (Os03t0245500-01)",3,7681570,7682838]
["OS02T0291600-01",0.00428246195044571,0.0958518516556903,-0.6154588723781891,"OS02G0291600",null,335.334539491205,294.38845533539,194.165308282646,216.868902851903,"no","OS02G0291600","Os02g0291600 protein [Source:UniProtKB/TrEMBL;Acc:Q6K868]","Lipase, GDSL domain containing protein. (Os02t0291600-01)",2,11071696,11077522,"GO:0016788","hydrolase activity, acting on ester bonds","Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS03T0317300-01",0.00431297603940647,0.0963935947007654,-1.5649665741388001,"OS03G0317300",null,150.849580075071,94.698384233762,36.1010874696378,46.8905735896007,"no","OS03G0317300","Eukaryotic aspartyl protease family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10MA3]","Peptidase A1 domain containing protein. (Os03t0317300-01)",3,11422308,11423805,"GO:0030163;GO:0006508;GO:0004190;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0766350-01",0.00430992169102903,0.0963935947007654,-1.4395001720960101,"OS03G0766350",null,54.0204577295862,73.0824487021424,23.4169216019272,23.4452867948004,"no","OS03G0766350","Os03g0766250 protein [Source:UniProtKB/TrEMBL;Acc:Q7Y0D9]","Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein. (Os03t0766350-01)",3,31735442,31736253]
["OS02T0685200-01",0.00432118161578407,0.0964284418941477,0.827066557199984,"OS02G0685200",null,108.873375103626,94.698384233762,193.126902322174,168.024555362736,"no","OS02G0685200","Os02g0685200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZHD2]","MYB transcription factor, Transcriptional activator in mediating stress and rhythm responsivegene expression (Os02t0685200-01)",2,28041117,28044149,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0457800-02",0.004327160049649011,0.0964284418941477,-1.23936389357538,"OS05G0457800",null,186.523467254986,209.983373735733,66.3479445387937,101.596242777468,"no","OS05G0457800","Os05g0457800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DHL8]","Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5). (Os05t0457800-01);Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5). (Os05t0457800-02)",5,22481303,22484543,"GO:0016311;GO:0010143;GO:0090447;GO:0016791;GO:0016020;GO:0016746;GO:0008152;GO:0016021","dephosphorylation;cutin biosynthetic process;glycerol-3-phosphate 2-O-acyltransferase activity;phosphatase activity;membrane;transferase activity, transferring acyl groups;metabolic process;integral component of membrane","The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = CoA + a 2-acyl-sn-glycerol 3-phosphate. [EC:2.3.1.198];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0348800-03",0.00432654107841097,0.0964284418941477,"-Inf","OS06G0348800","GLK1",26.8769418137913,40.7139708804352,0,0,"no","OS06G0348800","Probable transcription factor GLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q5Z5I4]","Transfactor-like protein. (Os06t0348800-01);Homeodomain-like containing protein. (Os06t0348800-02);Transfactor-like protein. (Os06t0348800-03)",6,14078261,14082203,"GO:0045893;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0010638","positive regulation of transcription, DNA-templated;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;positive regulation of organelle organization","Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:dph, GOC:tb]"]
["OS11T0180200-01",0.00432126512700605,0.0964284418941477,-0.36689539262223203,"OS11G0180200",null,2844.7376891184,2873.89009544199,2075.3246769708,2359.18198372679,"no","OS11G0180200","Os11g0180200 protein [Source:UniProtKB/TrEMBL;Acc:Q0IU77]","Similar to Protein tyrosine phosphatase 1. (Os11t0180200-01)",11,4004606,4007457,"GO:0035335;GO:0016311;GO:0004725;GO:0016791;GO:0006470","peptidyl-tyrosine dephosphorylation;dephosphorylation;protein tyrosine phosphatase activity;phosphatase activity;protein dephosphorylation","The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric residues from a protein. [GOC:hb]"]
["OS06T0643800-01",4.3370224533966105E-3,0.0965406175080366,-0.288532391372526,"OS06G0643800",null,4187.09510100264,4305.68849184594,3346.6683789421,3606.66661860012,"no","OS06G0643800","Os06g0643800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WZF8]","Similar to Sucrose-phosphate synthase 7 (EC 2.4.1.14) (Fragment). (Os06t0643800-01)",6,26242050,26243863]
["OS12T0581300-01",0.004338513610844931,0.0965406175080366,-0.44363177453706604,"OS12G0581300",null,605.542387544457,640.262624640893,485.670632341909,430.34651321078,"no","OS12G0581300","Os12g0581300 protein [Source:UniProtKB/TrEMBL;Acc:Q0IMB2]","Protein of unknown function DUF620 family protein. (Os12t0581300-01)",12,24087199,24088344]
["OS05T0462301-00",0.00434175194256281,0.09654236197174601,-0.416579518478961,"OS05G0462301",null,748.712919066374,832.059492253367,569.395983481932,614.916799977806,"no","OS05G0462301","Os05g0462301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNA4]","Similar to predicted protein. (Os05t0462301-00)",5,22706591,22707526]
["OS02T0701600-01",0.004351652739924891,0.0966921414619528,-0.37350687491538304,"OS02G0701600","VTE4",1046.77377525066,1103.44204237601,782.515463531067,877.244480905447,"no","OS02G0701600","Probable tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6ZIK0]","Similar to Tocopherol O-methyltransferase, chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase). (Os02t0701600-01)",2,28894065,28897418,"GO:0010189;GO:0032259;GO:0009536;GO:0009507;GO:0008168;GO:0008152;GO:0016740;GO:0050342;GO:0051741","vitamin E biosynthetic process;methylation;plastid;chloroplast;methyltransferase activity;metabolic process;transferase activity;tocopherol O-methyltransferase activity;2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity","The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methionine + gamma-tocopherol = S-adenosyl-L-homocysteine + alpha-tocopherol. [EC:2.1.1.95, MetaCyc:TOCOPHEROL-O-METHYLTRANSFERASE-RXN];Catalysis of the reaction: 2-methyl-6-phytyl-1,4-benzoquinone + S-adenosyl-methionine = 2,3-dimethyl-6-phytyl-1,4-benzoquinone + S-adenosyl-homocysteine. [MetaCyc:RXN-2542]"]
["OS06T0247500-02",0.00435655478175085,0.0967307134389914,-0.49538215362166205,"OS06G0247500",null,3975.9629242533,3989.94691387217,2579.52526324659,3071.28205578851,"no","OS06G0247500","Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q654U8]","Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta subunit, Regulation of carbon metabolism during grain filling (Os06t0247500-01);Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit. (Os06t0247500-02)",6,7648990,7654307,"GO:0061615;GO:0003872;GO:0006096;GO:0047334;GO:0006002;GO:0046835;GO:0003824;GO:0008152;GO:0005737;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0016740","glycolytic process through fructose-6-phosphate;6-phosphofructokinase activity;glycolytic process;diphosphate-fructose-6-phosphate 1-phosphotransferase activity;fructose 6-phosphate metabolic process;carbohydrate phosphorylation;catalytic activity;metabolic process;cytoplasm;phosphorylation;kinase activity;metal ion binding;ATP binding;transferase activity","The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH. [GOC:dph, ISBN:0201090910, ISBN:0879010479];Catalysis of the reaction: ATP + D-fructose-6-phosphate = ADP + D-fructose 1,6-bisphosphate. [EC:2.7.1.11];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Catalysis of the reaction: fructose-6-phosphate + diphosphate = phosphate + fructose-1,6-bisphosphate. [EC:2.7.1.90, MetaCyc:2.7.1.90-RXN];The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism. [ISBN:0198506732];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0157600-02",0.00436121932643517,0.0967639599573327,0.28340490182710104,"OS08G0157600",null,5318.70802505641,5286.20480091645,6499.86789764651,6406.98853472801,"no","OS08G0157600","Os08g0157600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7W9]","MYB transcription factor, Circadian clock (Os08t0157600-01);Similar to LHY protein. (Os08t0157600-02);Similar to LHY protein. (Os08t0157600-03)",8,3360865,3373395,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0608200-01",0.00439835872935518,0.0975171668354568,0.35075036708927404,"OS02G0608200",null,912.461917353327,855.665124043317,1171.32801148896,1083.42952748799,"no","OS02G0608200","Os02g0608200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLS1]","Conserved hypothetical protein. (Os02t0608200-01)",2,23855880,23858516]
["OS07T0108300-02",0.0044082331475347,0.0976441928022344,0.276726494938551,"OS07G0108300",null,3456.00107703405,3506.74250352592,4289.1190028987,4145.84778888364,"no","OS07G0108300","Os07g0108300 protein [Source:UniProtKB/TrEMBL;Acc:Q69UU3]","Similar to Alanine aminotransferase. (Os07t0108300-01);Similar to Alanine aminotransferase. (Os07t0108300-02)",7,446195,451249,"GO:0030170;GO:0009058;GO:0003824;GO:0008483;GO:0016740","pyridoxal phosphate binding;biosynthetic process;catalytic activity;transaminase activity;transferase activity","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0687200-03",0.0044136760362623,0.0976441928022344,-0.32464058489532,"OS07G0687200","CAM1-2",4624.56632216249,5091.82974419599,3834.37283622658,3924.1430841957,"no","OS07G0687200","Calmodulin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q0JNS6]","Similar to Auxin-regulated calmodulin. (Os07t0687200-01);Similar to Calmodulin NtCaM3 (Calmodulin NtCaM4) (Calmodulin NtCaM5) (Calmodulin NtCaM6) (Calmodulin NtCaM7) (Calmodulin NtCaM8) (Calmodulin NtCaM11) (Calmodulin NtCaM12). (Os07t0687200-02);Similar to CAM7 (CALMODULIN 7); calcium ion binding. (Os07t0687200-03)",7,29197781,29200317,"GO:0005509;GO:0046872;","calcium ion binding;metal ion binding;","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];"]
["OS12T0601800-01",0.00441192425068265,0.0976441928022344,0.7214170155905051,"OS12G0601800",null,131.819483472467,113.827128745822,197.954083204623,207.068221037237,"no","OS12G0601800","Os12g0601800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUB6]","Similar to BZIP transcription factor family protein, expressed. (Os12t0601800-01)",12,25332774,25336537,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS05T0227600-00",0.0044250090642177,0.0977629897232112,0.718978235697707,"OS05G0227600",null,9136.25786752663,8194.91875752854,12671.9922062871,15855.3993701735,"no","OS05G0227600","Os05g0227600 protein [Source:UniProtKB/TrEMBL;Acc:Q84PC5]","Proline-rich glycoprotein, ABA-dependent inhibition of root growth (Os05t0227600-01)",5,7746542,7748227]
["OS09T0322400-01",4.4254456267086E-3,0.0977629897232112,-0.324414631005542,"OS09G0322400",null,2210.76175123533,2373.63558742451,1753.3420049443,1907.86021292688,"no","OS09G0322400","Os09g0322400 protein [Source:UniProtKB/TrEMBL;Acc:Q0J2N5]","Proteolipid membrane potential modulator domain containing protein. (Os09t0322400-01)",9,9397235,9398010,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0272600-01",4.4363702066732204E-3,0.0979335134062717,-0.34998874258177504,"OS01G0272600",null,954.531533441561,957.981714967989,772.758412863598,727.780777588595,"no","OS01G0272600","Os01g0272600 protein [Source:UniProtKB/TrEMBL;Acc:Q5NBG3]","Similar to Root determined nodulation 1. (Os01t0272600-01)",1,9424556,9429189,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0298400-01",0.00444429106804943,0.0980016528670637,0.32212210985293804,"OS03G0298400",null,1267.4905686785,1224.71572913919,1508.67472809351,1607.00211511433,"no","OS03G0298400","26S protease regulatory subunit 4, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8W422]","Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a). (Os03t0298400-01);Similar to 26S protease regulatory subunit 4 homolog. (Os03t0298400-02)",3,10462452,10466149,"GO:1901800;GO:0005524;GO:0000166;GO:0036402;GO:0031597;GO:0031595;GO:0045899;GO:0030433;GO:0008540;GO:0000502;GO:0017025;GO:0030163;GO:0016787;GO:0005737;GO:0006508;GO:0008233","positive regulation of proteasomal protein catabolic process;ATP binding;nucleotide binding;proteasome-activating ATPase activity;cytosolic proteasome complex;nuclear proteasome complex;positive regulation of RNA polymerase II transcriptional preinitiation complex assembly;ubiquitin-dependent ERAD pathway;proteasome regulatory particle, base subcomplex;proteasome complex;TBP-class protein binding;protein catabolic process;hydrolase activity;cytoplasm;proteolysis;peptidase activity","Any process that activates or increases the frequency, rate or extent of proteasomal protein catabolic process. [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:21669198];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. [GOC:rb, PMID:11430818];A proteasome complex found in the cytosol of a cell. [GOC:mah, GOC:mtg_sensu];A proteasome found in the nucleus of a cell. [GOC:mah];Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly. [GOC:go_curators];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858];The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. [GOC:mtg_sensu, GOC:rb];A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. [GOC:rb, http://en.wikipedia.org/wiki/Proteasome];Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). [GOC:jl, GOC:txnOH, http://www.mblab.gla.ac.uk/, PMID:16858867];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS04T0525900-01",4.4458723119190306E-3,0.0980016528670637,-0.289013281603589,"OS04G0525900",null,3224.91940106435,3450.31504295185,2671.4804727532,2791.94290248081,"no","OS04G0525900","OSJNBa0038O10.10 protein [Source:UniProtKB/TrEMBL;Acc:Q7XKJ7]","Major facilitator superfamily protein. (Os04t0525900-01)",4,26300029,26307657,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0493100-01",0.00445098748809957,0.0980436696008782,2.21468795747433,"OS06G0493100",null,225.25511619318,108.079677658098,898.624366473956,648.652934656144,"no","OS06G0493100","Brown planthopper-inducible protein-like [Source:UniProtKB/TrEMBL;Acc:Q656L1]","Conserved hypothetical protein. (Os06t0493100-01)",6,17066928,17068612,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0752701-01",0.00446305851200308,0.0981965735452697,0.382866068962584,"OS02G0752701",null,1078.53562882639,960.394202154592,1370.35819431214,1288.2629292394,"no","OS02G0752701","Os02g0752701 protein [Source:UniProtKB/TrEMBL;Acc:C7IZ19]","Conserved hypothetical protein. (Os02t0752701-01)",2,31647952,31650045]
["OS07T0531500-01",0.00446435718297917,0.0981965735452697,-0.927838936775463,"OS07G0531500",null,161.042119269332,186.308777677293,78.0564053397573,104.526903626818,"no","OS07G0531500","Os07g0531500 protein [Source:UniProtKB/TrEMBL;Acc:Q8GVN7]","Harpin-induced 1 domain containing protein. (Os07t0531500-01)",7,20806655,20807495,"GO:0009506;GO:0004871;GO:0046658;GO:0006952;GO:0007165;GO:0016020;GO:0016021","plasmodesma;signal transducer activity;anchored component of plasma membrane;defense response;signal transduction;membrane;integral component of membrane","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0140500-01",4.47102165373348E-3,0.0982276371198469,-0.35680337148024505,"OS01G0140500",null,964.101904975244,1034.08295446019,758.438950684013,801.929449320537,"no","OS01G0140500","Os01g0140500 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZDH6]","Similar to 60S ribosomal protein L26B. (Os01t0140500-01)",1,2137800,2138539,"GO:0042273;GO:0002181;GO:0003735;GO:0022625;GO:0003723;GO:0015934;GO:0005840;GO:0006412","ribosomal large subunit biogenesis;cytoplasmic translation;structural constituent of ribosome;cytosolic large ribosomal subunit;RNA binding;large ribosomal subunit;ribosome;translation","A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis. [GOC:jl];The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. [GOC:hjd];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). [ISBN:0198506732];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]"]
["OS07T0490500-01",4.4721996345151605E-3,0.0982276371198469,-0.295328796427108,"OS07G0490500",null,1716.14805877353,1710.70526039915,1355.12741340649,1437.36941964422,"no","OS07G0490500","Os07g0490500 protein [Source:UniProtKB/TrEMBL;Acc:Q0D6D4]","Xanthine/uracil/vitamin C permease family protein. (Os07t0490500-01)",7,18239866,18241394,"GO:0055085;GO:0006810;GO:0005215;GO:0016020;GO:0016021","transmembrane transport;transport;transporter activity;membrane;integral component of membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0403300-00",0.004476607575196681,0.0982329246117864,0.947142358234032,"OS09G0403300",null,187.189601280063,154.222487226999,285.398034704059,372.861493657504,"no","OS09G0403300","Os09g0403300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMQ9]","Similar to cytochrome P450. (Os09t0403300-00)",9,14194229,14196610,"GO:0016705;GO:0005506;GO:0055114;GO:0020037","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS09T0462875-00",4.4788709080982704E-3,0.0982329246117864,-4.79916404809061,"OS09G0462875",null,19.3658244690969,34.9972289559555,0.9757050667469671,0.9768869497833491,"no","OS09G0462875","Carboxypeptidase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMW9]","Peptidase S10, serine carboxypeptidase domain containing protein. (Os09t0462875-00)",9,17506089,17509560,"GO:0004185;GO:0051603;GO:0004180;GO:0006508;GO:0016787;GO:0008233","serine-type carboxypeptidase activity;proteolysis involved in cellular protein catabolic process;carboxypeptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS01T0191800-02",4.50739145376271E-3,0.0983439636102708,-0.383365822306902,"OS01G0191800",null,989.695555762796,1055.06351999572,810.520835987385,757.087386082095,"no","OS01G0191800","Os01g0191800 protein [Source:UniProtKB/TrEMBL;Acc:Q5SNH4]","Similar to Aurora kinase. (Os01t0191800-01);Similar to Aurora kinase. (Os01t0191800-02)",1,4909990,4913696,"GO:0016310;GO:0016301;GO:0007049;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0051233;GO:0032133;GO:0005876;GO:0000780;GO:0032465;GO:0007052;GO:0035174;GO:0035404","phosphorylation;kinase activity;cell cycle;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;spindle midzone;chromosome passenger complex;spindle microtubule;condensed nuclear chromosome, centromeric region;regulation of cytokinesis;mitotic spindle organization;histone serine kinase activity;histone-serine phosphorylation","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The area in the center of the spindle where the spindle microtubules from opposite poles overlap. [GOC:ai, PMID:15296749];A eukaryotically conserved protein complex that localizes to kinetochores in early mitosis, the spindle mid-zone in anaphase B and to the telophase midbody. It has been proposed that the passenger complex coordinates various events based on its location to different structures during the course of mitosis. Complex members include the BIR-domain-containing protein Survivin, Aurora kinase, INCENP and Borealin. [GOC:vw, PMID:16824200, PMID:19570910];Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. [ISBN:0815316194];The region of a condensed nuclear chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. [GOC:elh, GOC:kmv];Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells. [GOC:mah];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. [GOC:go_curators, GOC:mah];Catalysis of the transfer of a phosphate group to a serine residue of a histone. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic  chromosomes. [GOC:bf];The modification of histones by addition of a phosphate group to a serine residue. [GOC:bf]"]
["OS01T0238500-01",0.00451657582497044,0.0983439636102708,1.05534940450215,"OS01G0238500",null,475.048390177919,411.20975866335,866.193095076265,975.64761559333,"no","OS01G0238500","Branched-chain amino acid aminotransferase-like [Source:UniProtKB/TrEMBL;Acc:Q5NAM3]","Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor. (Os01t0238500-01);Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor. (Os01t0238500-02)",1,7665423,7668089,"GO:0008483;GO:0030170;GO:0008152;GO:0003824;GO:0016740;GO:0008696;GO:0046656","transaminase activity;pyridoxal phosphate binding;metabolic process;catalytic activity;transferase activity;4-amino-4-deoxychorismate lyase activity;folic acid biosynthetic process","Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 4-amino-4-deoxychorismate = 4-aminobenzoate + H(+) + pyruvate. [EC:4.1.3.38, RHEA:16204];The chemical reactions and pathways resulting in the formation of folic acid, pteroylglutamic acid. [GOC:ai]"]
["OS01T0697100-01",0.00451934161131252,0.0983439636102708,-0.889936316891191,"OS01G0697100",null,274.179304325635,275.860510594002,124.890248543612,171.932103161869,"no","OS01G0697100","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q8LJ11]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os01t0697100-01)",1,28847995,28849719,"GO:0043231;GO:0080044;GO:0080043;GO:0032259;GO:0008168;GO:0016758;GO:0016757;GO:0003676;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;methylation;methyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;nucleic acid binding;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0594900-01",0.00450471810897767,0.0983439636102708,-0.40261735267695997,"OS02G0594900",null,767.421064933165,822.387615484513,570.869036400752,631.796771353133,"no","OS02G0594900","Glycosyl transferase-like protein [Source:UniProtKB/TrEMBL;Acc:Q6ZI62]","Glycosyl transferase, family 17 protein. (Os02t0594900-01)",2,23069835,23072526,"GO:0006487;GO:0003830;GO:0016020;GO:0016021;GO:0016740","protein N-linked glycosylation;beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity;membrane;integral component of membrane;transferase activity","A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. [GOC:pr, RESID:AA0151, RESID:AA0156, RESID:AA0327];Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R. [EC:2.4.1.144];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0373400-01",0.00450392239148999,0.0983439636102708,0.936115185641591,"OS04G0373400",null,206.908545643509,172.927484252957,314.177031492523,412.58948153995,"no","OS04G0373400","Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:B7FAP5]","Similar to MATE efflux family protein, expressed. (Os04t0373400-01)",4,18212946,18216660,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0398000-01",0.00449496455879939,0.0983439636102708,-0.34096143283359504,"OS05G0398000",null,1940.6594625874,1728.24551226616,1459.65477985346,1437.00070313131,"no","OS05G0398000","Os05g0398000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKQ8]","Similar to Cyclin-P3-1. (Os05t0398000-01)",5,19363632,19365848,"GO:0051301;GO:0007049;GO:0000079;GO:0019901","cell division;cell cycle;regulation of cyclin-dependent protein serine/threonine kinase activity;protein kinase binding","The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. [GOC:go_curators, GOC:pr];Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. [GOC:jl]"]
["OS06T0324800-01",4.49597053696705E-3,0.0983439636102708,-5.41836788615963,"OS06G0324800",null,42.1634692975618,27.0829347721051,0,1.6192203911807899,"no","OS06G0324800","Os06g0324800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVZ3]","Phosphate transporter, Phosphate uptake (Os06t0324800-01)",6,12680638,12681851,"GO:0022857;GO:0055085;GO:0005215;GO:0016021;GO:0016020","transmembrane transporter activity;transmembrane transport;transporter activity;integral component of membrane;membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0486400-01",0.004513891303216381,0.0983439636102708,0.27516953390172905,"OS06G0486400",null,2286.18654127286,2407.60348611706,2809.05488716452,2871.07074541326,"no","OS06G0486400","Os06g0486400 protein [Source:UniProtKB/TrEMBL;Acc:Q67WX3]","Serine/threonine protein kinase domain containing protein. (Os06t0486400-01)",6,16604884,16616223,"GO:0007346;GO:0004674;GO:0005737;GO:0006468;GO:0005524;GO:0004672;GO:0023014;GO:0031098;GO:0032147","regulation of mitotic cell cycle;protein serine/threonine kinase activity;cytoplasm;protein phosphorylation;ATP binding;protein kinase activity;signal transduction by protein phosphorylation;stress-activated protein kinase signaling cascade;activation of protein kinase activity","Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals. [GOC:mah];Any process that initiates the activity of an inactive protein kinase. [GOC:mah]"]
["OS07T0537900-01",0.004510437028642291,0.0983439636102708,0.814362268086079,"OS07G0537900",null,139.242366211047,121.212816145561,201.933180596926,256.082633344268,"no","OS07G0537900","Os07g0537900 protein [Source:UniProtKB/TrEMBL;Acc:Q7F1L5]","Similar to SRK3 gene. (Os07t0537900-01);Hypothetical conserved gene. (Os07t0537900-02)",7,21146543,21149741,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0004674;GO:0005886","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;protein serine/threonine kinase activity;plasma membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS08T0557600-01",0.00449647678245526,0.0983439636102708,0.424600468275725,"OS08G0557600",null,2069.31147993601,2267.66409576538,2740.00587929395,3081.08599070068,"no","OS08G0557600","Monodehydroascorbate reductase [Source:UniProtKB/TrEMBL;Acc:Q6ZJ08]","Similar to Monodehydroascorbate reductase (EC 1.6.5.4) (MDAR) (Ascorbate free radical reductase) (AFR reductase). (Os08t0557600-01);Similar to Cytosolic monodehydroascorbate reductase. (Os08t0557600-02)",8,27899853,27903121,"GO:0050660;GO:0016491;GO:0055114;GO:0016656","flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;monodehydroascorbate reductase (NADH) activity","Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: NADH + H+ + 2 monodehydroascorbate = NAD+ + 2 ascorbate. [EC:1.6.5.4]"]
["OS10T0569500-01",0.004512655819136881,0.0983439636102708,1.76061709788461,"OS10G0569500",null,17.3273166302446,12.3519631609255,43.9067280036135,56.6594430874342,"no","OS10G0569500","Os10g0569500 protein [Source:UniProtKB/TrEMBL;Acc:Q8S7P7]","Conserved hypothetical protein. (Os10t0569500-01)",10,22578871,22579584]
["OS01T0142500-01",0.00455938358589156,0.098793111571744,-0.275306345739675,"OS01G0142500",null,2936.46564735129,2774.03332104249,2350.47350579344,2367.96815049771,"no","OS01G0142500","MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0JQS2]","Homeodomain-like containing protein. (Os01t0142500-01)",1,2281913,2284775,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0155800-01",0.00455749420424036,0.098793111571744,1.52321508819842,"OS01G0155800",null,113.137185056303,64.8478065948587,251.731907220717,259.851928642371,"no","OS01G0155800","Os01g0155800 protein [Source:UniProtKB/TrEMBL;Acc:Q943P5]","Conserved hypothetical protein. (Os01t0155800-01)",1,2999576,3001139]
["OS03T0152700-01",0.00454941757011673,0.098793111571744,0.7183619714575431,"OS03G0152700",null,175.311674141299,184.250117150472,331.739722693969,259.851928642371,"no","OS03G0152700","Os03g0152700 protein [Source:UniProtKB/TrEMBL;Acc:Q10RN1]","Pseudouridine synthase domain containing protein. (Os03t0152700-01)",3,2901596,2906614,"GO:0009982;GO:0009507;GO:0009451;GO:0001522;GO:0016866;GO:0003723;GO:0009501;GO:0000455","pseudouridine synthase activity;chloroplast;RNA modification;pseudouridine synthesis;intramolecular transferase activity;RNA binding;amyloplast;enzyme-directed rRNA pseudouridine synthesis","Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. [EC:5.4.99.12, GOC:mah];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. [GOC:hjd, GOC:mah];Catalysis of the transfer of a functional group from one position to another within a single molecule. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A plastid whose main function is to synthesize and store starch. [ISBN:0140514031];The intramolecular conversion of uridine to pseudouridine during ribosome biogenesis where the enzyme specifies the site that becomes pseudouridylated without using a guide RNA. [GOC:curators, ISBN:1555811337]"]
["OS05T0311000-01",0.00454862633108076,0.098793111571744,0.44153645998488505,"OS05G0311000",null,1092.67786432583,1050.72015625252,1347.06299659845,1563.77840884315,"no","OS05G0311000","Coatomer subunit delta-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0DJ99]","Clathrin adaptor, mu subunit, C-terminal domain containing protein. (Os05t0311000-01);Similar to delta-COP. (Os05t0311000-02)",5,14191542,14197286,"GO:0031410;GO:0030663;GO:0016192;GO:0006890;GO:0015031;GO:0005737;GO:0030126;GO:0006810;GO:0016020;GO:0005794;GO:0000139","cytoplasmic vesicle;COPI-coated vesicle membrane;vesicle-mediated transport;retrograde vesicle-mediated transport, Golgi to ER;protein transport;cytoplasm;COPI vesicle coat;transport;membrane;Golgi apparatus;Golgi membrane","A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The lipid bilayer surrounding a COPI-coated vesicle. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. [GOC:mah, PMID:11252894];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah]"]
["OS05T0568000-02",4.55077684395927E-3,0.098793111571744,-0.538033767606045,"OS05G0568000",null,4361.31985789449,4468.20804180886,2752.04884851848,3328.9256265019,"no","OS05G0568000","3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:Q688V9]","Similar to FAE1. (Os05t0568000-02)",5,28278858,28281235,"GO:0016746;GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring acyl groups;fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0524800-02",0.00455321355895452,0.098793111571744,-0.7175246507385551,"OS09G0524800",null,1122.62129473053,1265.33604615213,644.625279028018,807.587057191977,"no","OS09G0524800","Os09g0524800 protein [Source:UniProtKB/TrEMBL;Acc:Q651M9]","Apoptosis regulator Bcl-2 protein, BAG domain containing protein. (Os09t0524800-01);Apoptosis regulator Bcl-2 protein, BAG domain containing protein. (Os09t0524800-02)",9,20494540,20496911,"GO:0051087","chaperone binding","Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com]"]
["OS01T0869900-01",0.00456392910585869,0.0988215181021932,-0.384717999982418,"OS01G0869900",null,3741.68113821341,3878.5164325306,2726.11995649103,3110.40804811018,"no","OS01G0869900","Os01g0869900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAV0]","Serine/threonine protein kinase, Hyperosmotic stress response (Os01t0869900-01)",1,37711973,37714881,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS08T0101500-01",4.5734712442227505E-3,0.0989579981965251,1.5052342425804999,"OS08G0101500",null,193.035737899728,117.169733760959,392.786746356919,487.795877577933,"no","OS08G0101500","Molybdate transporter 1 [Source:Projected from Arabidopsis thaliana (AT2G25680) UniProtKB/Swiss-Prot;Acc:Q9SL95]","Similar to sulfate transporter. (Os08t0101500-01)",8,86388,87854,"GO:0015689;GO:0015098;GO:0016021;GO:0016020;GO:0005739;GO:0005773","molybdate ion transport;molybdate ion transmembrane transporter activity;integral component of membrane;membrane;mitochondrion;vacuole","The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid. [GOC:ai];Enables the transfer of molybdate (MoO4 2-) ions from one side of a membrane to the other. Molybdate is the bivalent anion derived from molybdic acid. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS01T0668600-00",0.00457816448232096,0.0989694757196453,-0.641272691799298,"OS01G0668600",null,297.262279347862,346.884298769324,190.262488015659,222.730224550604,"no","OS01G0668600","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q8W059]","Curculin-like (mannose-binding) lectin domain containing protein. (Os01t0668600-00)",1,27375122,27377698,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0634400-01",4.5804804486638704E-3,0.0989694757196453,0.285174011859823,"OS07G0634400",null,7137.83519774136,6883.13147142572,8396.9178044244,8688.4325313731,"no","OS07G0634400","Os07g0634400 protein [Source:UniProtKB/TrEMBL;Acc:Q8LHP3]","HAD-superfamily hydrolase, subfamily IA, variant 3 domain containing protein. (Os07t0634400-01)",7,26327405,26329772,"GO:0016787;GO:0008152","hydrolase activity;metabolic process","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS02T0187800-01",0.004614313394366951,0.0990366794283415,-0.61528688771751,"OS02G0187800","CAD2",4179.03245103311,3884.94565177769,2359.9613964425,2904.20405588936,"no","OS02G0187800","Cinnamyl alcohol dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZHS4]","Cinnamyl-alcohol dehydrogenase, Lignin biosynthesis, Monolignol biosynthesis (Os02t0187800-01);Similar to Cinnamyl alcohol dehydrogenase 1a. (Os02t0187800-02)",2,4870151,4874038,"GO:0046872;GO:0016491;GO:0055114;GO:0008270;GO:0009809;GO:0009699;GO:0052747;GO:0045551","metal ion binding;oxidoreductase activity;oxidation-reduction process;zinc ion binding;lignin biosynthetic process;phenylpropanoid biosynthetic process;sinapyl alcohol dehydrogenase activity;cinnamyl-alcohol dehydrogenase activity","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers. [GOC:tair_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid. [GOC:jl];Catalysis of the reaction: sinapaldehyde + NADPH + H+ = sinapyl-alcohol + NADP+. [GOC:mengo_curators, MetaCyc:RXN-1125];Catalysis of the reaction: cinnamyl alcohol + NADP+ = cinnamaldehyde + NADPH + H+. [EC:1.1.1.195]"]
["OS02T0721600-05",0.00460497757538004,0.0990366794283415,0.427610909888521,"OS02G0721600",null,665.455165332874,723.423083844351,888.409986915028,979.637391974439,"no","OS02G0721600","Os02g0721600 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z664]","WD40 subfamily protein, Salt stress (Os02t0721600-01);Similar to WD-repeat protein-like. (Os02t0721600-02);Similar to WD-repeat protein-like. (Os02t0721600-03);Similar to WD-repeat protein-like. (Os02t0721600-04);Similar to WD-repeat protein-like. (Os02t0721600-05)",2,29934470,29941648]
["OS03T0269900-01",4.5952285161796206E-3,0.0990366794283415,0.56871319095654,"OS03G0269900",null,227.293624032032,229.540648740532,316.128441626017,361.448171419839,"no","OS03G0269900","Fringe protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NG1]","Protein of unknown function DUF604 family protein. (Os03t0269900-01)",3,9011629,9016463,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0281600-01",0.00460590528266787,0.0990366794283415,0.33412831969214,"OS03G0281600",null,830.323599134991,853.227220470828,1084.35735806197,1037.95291924269,"no","OS03G0281600","Os03g0281600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DSY0]","Similar to Ca2+-ATPase. (Os03t0281600-01);Similar to Ca2+-ATPase (Fragment). (Os03t0281600-02)",3,9635957,9642093,"GO:0070588;GO:0006816;GO:0005388;GO:0071421;GO:0005783;GO:0099132;GO:0006810;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020;GO:0033017","calcium ion transmembrane transport;calcium ion transport;calcium-transporting ATPase activity;manganese ion transmembrane transport;endoplasmic reticulum;ATP hydrolysis coupled cation transmembrane transport;transport;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane;sarcoplasmic reticulum membrane","A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). [EC:3.6.3.8];A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The lipid bilayer surrounding the sarcoplasmic reticulum. [GOC:rph]"]
["OS03T0806700-01",0.004598411690872921,0.0990366794283415,-0.843193308098593,"OS03G0806700",null,317.511752205683,341.472145598572,185.525285042782,181.797886042696,"no","OS03G0806700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q84M57]","Protein of unknown function DUF868, plant family protein. (Os03t0806700-01);Protein of unknown function DUF868, plant family protein. (Os03t0806700-02)",3,33711473,33713542]
["OS05T0123100-01",0.0045995233500435,0.0990366794283415,-0.447914398623843,"OS05G0123100",null,3248.18162385398,3716.83162602253,2449.01971753489,2657.04455833941,"no","OS05G0123100","Glycosyltransferases [Source:UniProtKB/TrEMBL;Acc:A0A023ND31]","Glycosyl transferase, family 43 protein. (Os05t0123100-01)",5,1279205,1285411,"GO:0000139;GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0071555;GO:0016740;GO:0015018;GO:0042285;GO:0009834;GO:0010417","Golgi membrane;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;cell wall organization;transferase activity;galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity;xylosyltransferase activity;plant-type secondary cell wall biogenesis;glucuronoxylan biosynthetic process","The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein. [EC:2.4.1.135];Catalysis of the transfer of a xylosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [GOC:ai];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues. [GOC:tair_curators]"]
["OS05T0537300-01",4.61924810766518E-3,0.0990366794283415,0.462854241966755,"OS05G0537300",null,484.145611727423,462.169288271295,699.580532857575,604.693021915893,"no","OS05G0537300","Os05g0537300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DGE1]","Similar to Unconventional myosin heavy chain. (Os05t0537300-01)",5,26701863,26705017,"GO:0003779;GO:0016459;GO:0003774;GO:0005524;GO:0000166","actin binding;myosin complex;motor activity;ATP binding;nucleotide binding","Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. [GOC:clt];A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes. [GOC:mah, http://www.mrc-lmb.cam.ac.uk/myosin/Review/Reviewframeset.html, ISBN:96235764];Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS06T0622900-01",0.00461211898213891,0.0990366794283415,-0.34109028123439,"OS06G0622900",null,1521.74610170325,1635.60578855921,1187.43306623106,1305.12096491055,"no","OS06G0622900","Os06g0622900 protein [Source:UniProtKB/TrEMBL;Acc:Q69U07]","Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2. (Os06t0622900-01)",6,25054771,25058817,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS07T0280200-01",4.6010078650820406E-3,0.0990366794283415,-0.8863183455787681,"OS07G0280200","4CLL7",1012.54292713594,777.144348874894,444.921510436617,523.286658892462,"no","OS07G0280200","4-coumarate--CoA ligase-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q69RG7]","AMP-dependent synthetase and ligase domain containing protein. (Os07t0280200-01)",7,10636445,10642943,"GO:0016874;GO:0005524;GO:0000166;GO:0008152;GO:0003824","ligase activity;ATP binding;nucleotide binding;metabolic process;catalytic activity","Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS09T0465500-01",0.004618190235661171,0.0990366794283415,0.5431457717504721,"OS09G0465500",null,258.890495534243,229.540648740532,359.059464562884,352.656188871789,"no","OS09G0465500","Os09g0465500 protein [Source:UniProtKB/TrEMBL;Acc:Q6YXI2]","Conserved hypothetical protein. (Os09t0465500-01)",9,17645487,17648515]
["OS11T0539200-01",4.60949648018813E-3,0.0990366794283415,-0.90396703750391,"OS11G0539200",null,907.495096688964,1020.39097429787,437.78548320529,592.506148007496,"no","OS11G0539200","Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q2R336]","Similar to Xyloglucan endotransglycosylase XET2 (Fragment). (Os11t0539200-01)",11,19675012,19677815,"GO:0005618;GO:0010411;GO:0008152;GO:0006073;GO:0016798;GO:0016762;GO:0048046;GO:0042546;GO:0004553;GO:0005975;GO:0016787;GO:0005576;GO:0071555;GO:0016740","cell wall;xyloglucan metabolic process;metabolic process;cellular glucan metabolic process;hydrolase activity, acting on glycosyl bonds;xyloglucan:xyloglucosyl transferase activity;apoplast;cell wall biogenesis;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization;transferase activity","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:tair_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. [ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. [EC:2.4.1.207, GOC:ask, PMID:1400418, PMID:1554366];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:0198506732];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0743900-01",0.00463221334220692,0.0992450084369606,0.45529166371057705,"OS03G0743900",null,8007.25879101187,9270.14835227457,11431.3605620075,12257.0005589317,"no","OS03G0743900","Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q84MN8]","Similar to ATP sulfurylase. (Os03t0743900-01)",3,30532225,30535298,"GO:0004781;GO:0000103;GO:0016310;GO:0004020","sulfate adenylyltransferase (ATP) activity;sulfate assimilation;phosphorylation;adenylylsulfate kinase activity","Catalysis of the reaction: ATP + sulfate = diphosphate + adenylylsulfate. [EC:2.7.7.4];The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. [GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the reaction: ATP + adenylylsulfate = ADP + 3'-phosphoadenosine 5'-phosphosulfate. [EC:2.7.1.25]"]
["OS07T0485100-01",0.004640385667570131,0.0993504295133865,0.30911790362470803,"OS07G0485100",null,1412.68593232465,1456.5023227258,1704.55675160695,1850.22388288966,"no","OS07G0485100","Beta-ureidopropionase [Source:Projected from Arabidopsis thaliana (AT5G64370) UniProtKB/Swiss-Prot;Acc:Q8H183]","Similar to Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase) (N- carbamoyl-beta-alanine amidohydrolase). (Os07t0485100-01)",7,17820616,17823684,"GO:0016810;GO:0006807","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;nitrogen compound metabolic process","Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. [GOC:jl];The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732]"]
["OS03T0145800-02",0.00464868385977558,0.09945272751549301,-0.282212700497218,"OS03G0145800",null,2113.12820682243,2237.16818379161,1791.4420280596,1785.93207633714,"no","OS03G0145800","Os03g0145800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DV72]","Ankyrin repeat containing protein. (Os03t0145800-01);Similar to tankyrase 1. (Os03t0145800-02)",3,2543680,2546338,"GO:0016020;GO:0016021;GO:0005829","membrane;integral component of membrane;cytosol","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS12T0112000-01",0.00465167411690362,0.09945272751549301,-0.565040520680394,"OS12G0112000",null,368.096337507379,332.589396859527,243.051341642239,230.56767315004,"no","OS12G0112000","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5U1F8]","Similar to Peroxidase precursor (EC 1.11.1.7) (Fragment). (Os12t0112000-01)",12,623582,626113,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0016020;GO:0016021","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0511000-01",0.00465660669776591,0.0994885649161847,-0.57915206165878,"OS12G0511000",null,450.51023238636,443.641343529907,268.318893355416,330.187789026772,"no","OS12G0511000","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QQ09]","Similar to F-box domain containing protein, expressed. (Os12t0511000-01)",12,19684833,19687877,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0563900-01",0.00466358135571435,0.0995679507895072,-0.306316671902846,"OS06G0563900","DGAT1-2",1256.74008265245,1271.22287531191,1013.7575643501,1030.61573202143,"no","OS06G0563900","Diacylglycerol O-acyltransferase 1-2 [Source:UniProtKB/Swiss-Prot;Acc:A0A0P0WY03]","Similar to Diacylglycerol acyltransferase. (Os06t0563900-01)",6,21677541,21684368,"GO:0019432;GO:0006071;GO:0004144;GO:0005789;GO:0005783;GO:0006629;GO:0016746;GO:0008374;GO:0016020;GO:0016021;GO:0016740","triglyceride biosynthetic process;glycerol metabolic process;diacylglycerol O-acyltransferase activity;endoplasmic reticulum membrane;endoplasmic reticulum;lipid metabolic process;transferase activity, transferring acyl groups;O-acyltransferase activity;membrane;integral component of membrane;transferase activity","The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol. [ISBN:0198506732];The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:ai, ISBN:0198506732];Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol. [EC:2.3.1.20];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0514500-02",0.00467279396075147,0.0996949728274294,0.349370854417453,"OS12G0514500",null,1538.1913157929,1645.91854822562,2107.5001795092,1949.07146813836,"no","OS12G0514500","Heat shock protein 90-6, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G07770) UniProtKB/Swiss-Prot;Acc:F4JFN3]","Similar to Heat-shock protein precursor. (Os12t0514500-01);Similar to ATP binding. (Os12t0514500-02);Similar to ATP binding. (Os12t0514500-03)",12,19921665,19927728,"GO:0006950;GO:0006457;GO:0051082;GO:0005524;GO:0005618;GO:0005739;GO:0009570","response to stress;protein folding;unfolded protein binding;ATP binding;cell wall;mitochondrion;chloroplast stroma","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS01T0650100-01",0.00467964750299029,0.0997232880884629,-0.569684516068478,"OS01G0650100",null,308.266689142124,323.642425894882,200.143037662576,225.614644137495,"no","OS01G0650100","Os01g0650100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5W7]","Similar to Esterase. (Os01t0650100-01)",1,26235768,26238284]
["OS02T0306550-00",0.00468942052326146,0.0997232880884629,0.48064480627676104,"OS02G0306550",null,347.899156715199,356.227991715266,520.067316702265,462.448596973593,"no","OS02G0306550","Os02g0306550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VI24]","Conserved hypothetical protein. (Os02t0306550-00)",2,12008815,12015423,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0510100-01",0.00469308133479856,0.0997232880884629,-0.41672218744472905,"OS02G0510100",null,1122.96477758101,1186.8681366695,845.218424102665,885.134484504281,"no","OS02G0510100","Os02g0510100 protein [Source:UniProtKB/TrEMBL;Acc:Q6K2E9]","Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F). (Os02t0510100-01);Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F). (Os02t0510100-02)",2,18231489,18235780,"GO:0046540;GO:0005688;GO:0030490;GO:0005681;GO:0008380;GO:0005730;GO:0000398;GO:0005732;GO:0000932;GO:0006397;GO:0003723;GO:0030529;GO:0005634","U4/U6 x U5 tri-snRNP complex;U6 snRNP;maturation of SSU-rRNA;spliceosomal complex;RNA splicing;nucleolus;mRNA splicing, via spliceosome;small nucleolar ribonucleoprotein complex;P-body;mRNA processing;RNA binding;intracellular ribonucleoprotein complex;nucleus","A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. [GOC:krc, GOC:pr, PMID:11867543];A ribonucleoprotein complex that contains small nuclear RNA U6. [GOC:krc, GOC:mah];Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule. [GOC:curators];Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. [GOC:editors, GOC:mah, ISBN:0198547684, PMID:19239890];The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type. [GOC:krc, GOC:mah, ISBN:0879695897];A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. [GOC:clt, PMID:12730603];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0554000-02",0.00469370542914407,0.0997232880884629,0.290312246546007,"OS02G0554000",null,1293.49886642923,1317.79903096952,1610.5206393825,1582.84842209039,"no","OS02G0554000","Os02g0554000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VK92]","SET domain domain containing protein. (Os02t0554000-01);Conserved hypothetical protein. (Os02t0554000-02)",2,20900191,20910475,"GO:0032259;GO:0008168;GO:0005634;GO:0008270;GO:0016740;GO:0018024;GO:0034968","methylation;methyltransferase activity;nucleus;zinc ion binding;transferase activity;histone-lysine N-methyltransferase activity;histone lysine methylation","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. [EC:2.1.1.43, RESID:AA0074, RESID:AA0075, RESID:AA0076];The modification of a histone by addition of one or more methyl groups to a lysine residue. [GOC:mah, GOC:pr]"]
["OS03T0310800-01",0.004684471381838751,0.0997232880884629,-0.7075187670997981,"OS03G0310800",null,305.744654529437,379.822867198458,197.092423482887,222.730224550604,"no","OS03G0310800","EF hand family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10MF3]","Similar to Hypersensitive reaction associated Ca2+-binding protein. (Os03t0310800-01)",3,11093574,11094514,"GO:0005509;GO:0042538;GO:0005829","calcium ion binding;hyperosmotic salinity response;cytosol","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS05T0490000-01",0.00468240212729249,0.0997232880884629,0.48201714740057505,"OS05G0490000",null,322.084238538665,309.828409286547,426.383114168425,456.206205548824,"no","OS05G0490000","Os05g0490000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WP57]","KRR1 interacting protein 1 domain containing protein. (Os05t0490000-01)",5,24076052,24077881,"GO:0030686;GO:0005730;GO:0000447;GO:0005829","90S preribosome;nucleolus;endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);cytosol","A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12150911, PMID:12957375, PMID:15120992];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS05T0495600-00",0.00471325503238036,0.0999625408942739,-0.48975679966605806,"OS05G0495600",null,493.318897002259,540.398388290489,343.448183494932,392.708553812906,"no","OS05G0495600","Os05g0495600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KL09]","Similar to autoinhibited calcium ATPase. (Os05t0495600-00)",5,24347149,24354016,"GO:0005388;GO:0043231;GO:0005887;GO:0005516;GO:0006816;GO:0070588;GO:0099132;GO:0046872;GO:0006810;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","calcium-transporting ATPase activity;intracellular membrane-bounded organelle;integral component of plasma membrane;calmodulin binding;calcium ion transport;calcium ion transmembrane transport;ATP hydrolysis coupled cation transmembrane transport;metal ion binding;transport;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). [EC:3.6.3.8];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0140800-02",4.71478205775886E-3,0.0999625408942739,-0.611910405546179,"OS06G0140800",null,381.232942458932,401.680998086174,246.29474290759,265.989077244539,"no","OS06G0140800","Os06g0140800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DEQ5]","Protein kinase, core domain containing protein. (Os06t0140800-01);Similar to Serine threonine kinase. (Os06t0140800-02)",6,2140055,2146616,"GO:0016567;GO:0004842;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016310;GO:0016301;GO:0006950","protein ubiquitination;ubiquitin-protein transferase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;phosphorylation;kinase activity;response to stress","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS11T0186200-01",0.004711708125188021,0.0999625408942739,0.488927305370757,"OS11G0186200",null,5716.9952340613,6360.23169761321,7896.3811051832,9052.81136364229,"no","OS11G0186200","Aldehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q53NG8]","Similar to Aldehyde dehydrogenase (EC 1.2.1.3). (Os11t0186200-01)",11,4375371,4379958,"GO:0006081;GO:0004030;GO:0055114;GO:0016491;GO:0008152;GO:0016020;GO:0016021","cellular aldehyde metabolic process;aldehyde dehydrogenase [NAD(P)+] activity;oxidation-reduction process;oxidoreductase activity;metabolic process;membrane;integral component of membrane","The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. [GOC:go_curators, ISBN:0198506732];Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+. [EC:1.2.1.5];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0116000-00",0.004724859789048841,0.10010673805479901,-0.426586130022349,"OS03G0116000",null,542.243085134714,583.630259353729,409.796128033726,427.876484005107,"no","OS03G0116000","Os03g0116000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VS81]","Similar to 60Kd inner membrane protein, expressed. (Os03t0116000-00)",3,906127,909697,"GO:0016021;GO:0051205;GO:0016020","integral component of membrane;protein insertion into membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process that results in the incorporation of a protein into a biological membrane.  Incorporation in this context means having some part or covalently attached group that is inserted into the the hydrophobic region of one or both bilayers. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0125100-01",0.00473173870655111,0.10012172974564501,-0.715216952976599,"OS03G0125100",null,197.47043942076,201.524411867312,111.959504815357,131.073656007633,"no","OS03G0125100","Beta-carotene hydroxylase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10SE7]","Beta-carotene hydroxylase, Drought and oxidative stress resistance (Os03t0125100-01)",3,1436356,1439055,"GO:0008610;GO:0005506;GO:0016491;GO:0055114;GO:0009507;GO:0016123;GO:0016119;GO:0016020;GO:0016021","lipid biosynthetic process;iron ion binding;oxidoreductase activity;oxidation-reduction process;chloroplast;xanthophyll biosynthetic process;carotene metabolic process;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids. [GOC:go_curators];The chemical reactions and pathways involving carotenes, hydrocarbon carotenoids. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0288200-01",4.73212155514245E-3,0.10012172974564501,0.830257065399794,"OS08G0288200",null,100.906138023189,104.991686867867,202.946653883369,163.140120613819,"no","OS08G0288200","Os08g0288200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XE97]","Adenylate kinase family protein. (Os08t0288200-01)",8,11442670,11453068,"GO:0004017;GO:0016776;GO:0019205;GO:0016310;GO:0046939;GO:0016301;GO:0009536;GO:0009507;GO:0006139;GO:0005524;GO:0000166;GO:0016740;GO:0009534;GO:0009535;GO:0009941","adenylate kinase activity;phosphotransferase activity, phosphate group as acceptor;nucleobase-containing compound kinase activity;phosphorylation;nucleotide phosphorylation;kinase activity;plastid;chloroplast;nucleobase-containing compound metabolic process;ATP binding;nucleotide binding;transferase activity;chloroplast thylakoid;chloroplast thylakoid membrane;chloroplast envelope","Catalysis of the reaction: ATP + AMP = 2 ADP. [EC:2.7.4.3];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor). [GOC:jl];Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. [GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. [GOC:ai];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS03T0745550-01",4.7435709941958705E-3,0.100150265014128,-0.7895103357990171,"OS03G0745550",null,169.886670263453,149.661835751515,92.2073139825703,92.6644131108287,"no","OS03G0745550","Os03g0745500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DNM9]","Conserved hypothetical protein. (Os03t0745550-01)",3,30633708,30636490]
["OS07T0147700-01",0.0047465823429058,0.100150265014128,-0.389849814847659,"OS07G0147700",null,660.476539788148,639.214093577893,480.046892839508,511.888761686475,"no","OS07G0147700","Os07g0147700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZF69]","ATPase, BadF/BadG/BcrA/BcrD  type domain containing protein. (Os07t0147700-01)",7,2465582,2468069,"GO:0016310;GO:0016301","phosphorylation;kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS07T0169600-01",0.00474508191089541,0.100150265014128,0.749272707993143,"OS07G0169600",null,565.685925281516,455.993306690832,790.321104065043,927.065715344398,"no","OS07G0169600","Os07g0169600 protein [Source:UniProtKB/TrEMBL;Acc:Q69LD9]","2OG-Fe(II) oxygenase domain containing protein. (Os07t0169600-01)",7,3699627,3701537,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS12T0476200-01",0.00473967493758534,0.100150265014128,-0.79125452403989,"OS12G0476200","SWEET13",498.38058471974,527.780343674705,255.116471903727,337.841795574893,"no","OS12G0476200","Bidirectional sugar transporter SWEET13 [Source:UniProtKB/Swiss-Prot;Acc:Q2QR07]","Sucrose transporter, TAL effector PthXo2-dependent disease susceptibility to bacterial pathogen (Os12t0476200-01)",12,17302127,17305326,"GO:0016021;GO:0008643;GO:0005886;GO:0006810;GO:0005887;GO:0034219;GO:0051119;GO:0016020","integral component of membrane;carbohydrate transport;plasma membrane;transport;integral component of plasma membrane;carbohydrate transmembrane transport;sugar transmembrane transporter activity;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of a sugar from one side of the membrane to the other. A sugar is any member of a class of sweet, water-soluble, crystallizable carbohydrates, which are the monosaccharides and smaller oligosaccharides. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0489900-01",0.00475394181377915,0.100236321804403,-0.40142539882535205,"OS05G0489900","CCAMK",615.629367333397,593.923561987833,458.581381371074,457.183092498607,"no","OS05G0489900","Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase [Source:UniProtKB/Swiss-Prot;Acc:Q6AVM3]","Ca/calmodulin-dependent protein kinase, Calcium/calmodulin-dependent protein kinase, Bacterial and fungal symbioses, Common symbiosis signaling (SYM) pathway (Os05t0489900-01)",5,24071191,24075089,"GO:0046777;GO:0009931;GO:0005516;GO:0004683;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005509;GO:0046872;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein autophosphorylation;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;phosphorylation;kinase activity;calcium ion binding;metal ion binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0529600-01",0.00477756503365437,0.10059556644259701,-0.30441648715303304,"OS02G0529600","GT2",2486.97956339982,2682.21661487874,2023.30948356429,2162.5487998507,"no","OS02G0529600","Probable glycosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6H765]","Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1). (Os02t0529600-01)",2,19451675,19453581,"GO:0005802;GO:0005768;GO:0009969;GO:0016758;GO:0016757;GO:0016021;GO:0016020;GO:0005794;GO:0000139;GO:0016740","trans-Golgi network;endosome;xyloglucan biosynthetic process;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;integral component of membrane;membrane;Golgi apparatus;Golgi membrane;transferase activity","The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. [GOC:vw, ISBN:0815316194];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:sm];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0162450-01",4.7762729362034306E-3,0.10059556644259701,-1.14609211604435,"OS07G0162450",null,90.7135988289277,75.6466713201455,41.9553178701196,33.2141562926339,"no","OS07G0162450","Os07g0162450 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIL6]","Protein of unknown function DUF3778 domain containing protein. (Os07t0162450-01)",7,3339394,3340629]
["OS02T0258300-02",4.79337753677653E-3,0.10075752768646801,-0.757150451540726,"OS02G0258300",null,275.378802371394,348.925257183901,196.217056398282,173.161059556129,"no","OS02G0258300","Extra-large G-protein-like [Source:UniProtKB/TrEMBL;Acc:Q6K2T0]","Zinc finger, FYVE/PHD-type domain containing protein. (Os02t0258300-01);Similar to extra-large G-protein-related. (Os02t0258300-02)",2,8938133,8943482]
["OS07T0683900-01",0.00479515073501322,0.10075752768646801,0.7377222421360651,"OS07G0683900","R40G2",2364.12373580551,1808.87891507774,3455.90774215305,3502.74531278719,"no","OS07G0683900","Ricin B-like lectin R40G2 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z4N6]","Ricin B-related lectin domain containing protein. (Os07t0683900-01);Similar to Osr40g2 protein (Fragment). (Os07t0683900-02)",7,29004217,29006208,"GO:0030246","carbohydrate binding","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah]"]
["OS12T0162100-02",0.004790283421047281,0.10075752768646801,-0.356085295949344,"OS12G0162100","WNK9",11386.0855339096,10095.6712235298,8553.03061510391,8230.27255192471,"no","OS12G0162100","Probable serine/threonine-protein kinase WNK9 [Source:UniProtKB/Swiss-Prot;Acc:Q2QXC6]","Similar to cDNA clone:J033067N18, full insert sequence. (Os12t0162100-01);Similar to MAP kinase-like protein. (Os12t0162100-02)",12,3128685,3131709,"GO:0046872;GO:0006468;GO:0005524;GO:0004672;GO:0005829;GO:0035556;GO:0004674;GO:0016310;GO:0016301;GO:0000166;GO:0016740","metal ion binding;protein phosphorylation;ATP binding;protein kinase activity;cytosol;intracellular signal transduction;protein serine/threonine kinase activity;phosphorylation;kinase activity;nucleotide binding;transferase activity","Interacting selectively and non-covalently with any metal ion. [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0495900-01",0.004801603973153831,0.10082378322185301,-0.5193159315814411,"OS05G0495900",null,400.058834467508,414.139024809441,264.307700659499,303.760244334277,"no","OS05G0495900","'putative beta-1,3-glucanase [Source:UniProtKB/TrEMBL;Acc:Q65X69]","Similar to Beta-1,3-glucanase precursor (Fragment). (Os05t0495900-01)",5,24371216,24374660,"GO:0030247;GO:0004553;GO:0046658;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0042973","polysaccharide binding;hydrolase activity, hydrolyzing O-glycosyl compounds;anchored component of plasma membrane;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;glucan endo-1,3-beta-D-glucosidase activity","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans. [EC:3.2.1.39]"]
["OS08T0444100-01",0.004816633346036231,0.10106990521160601,-0.311744505272866,"OS08G0444100",null,2755.04334420889,3038.58293758767,2281.19844605441,2386.53481832072,"no","OS08G0444100","Os08g0444100 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z8Q6]","Similar to Splicing factor 3b, subunit 5 (Splicing factor 3B subunit 10). (Os08t0444100-01)",8,21632069,21636313,"GO:0071011;GO:0000398;GO:0005686;GO:0005689","precatalytic spliceosome;mRNA splicing, via spliceosome;U2 snRNP;U12-type spliceosomal complex","A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, PMID:18322460, PMID:19239890];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];A ribonucleoprotein complex that contains small nuclear RNA U2. [GOC:krc, GOC:mah];Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site. [GOC:krc, GOC:mah, PMID:11574683, PMID:11971955]"]
["OS02T0710300-01",0.00482566572841462,0.101189937772494,-0.672063808698201,"OS02G0710300",null,234.254081999103,209.655781953272,143.070532209057,135.530954740383,"no","OS02G0710300","Os02g0710300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DY80]","ROOT HAIR DEFECTIVE-SIX LIKE (RSL) class I basic helix-loop-helix protein, bHLH transcription factor, Regulation of root hair development (Os02t0710300-01)",2,29421401,29422989,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS01T0542700-01",0.004857966821809861,0.10121722269219101,-0.362480989456184,"OS01G0542700",null,774.632978763877,761.704394923737,583.471629914686,611.531230564376,"no","OS01G0542700","Os01g0542700 protein [Source:UniProtKB/TrEMBL;Acc:Q8RYP6]","bZIP transcription factor, bZIP-1 domain containing protein. (Os01t0542700-01)",1,20034162,20035006,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0602800-01",0.00483180468604752,0.10121722269219101,-0.34788137924732104,"OS01G0602800",null,1057.98556836435,1154.90855554653,893.745841140222,845.007211562597,"no","OS01G0602800","Os01g0602800 protein [Source:UniProtKB/TrEMBL;Acc:B7F9R5]","Serine/threonine protein kinase-related domain containing protein. (Os01t0602800-01)",1,23727763,23733053,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0018108;GO:0004713;GO:0016310;GO:0016301;GO:0005524;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;peptidyl-tyrosine phosphorylation;protein tyrosine kinase activity;phosphorylation;kinase activity;ATP binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0916800-00",0.004835614141522481,0.10121722269219101,0.323923853837752,"OS01G0916800",null,1276.66912791869,1245.23545946314,1653.48298917948,1503.2616234196,"no","OS01G0916800","THO complex subunit 2 [Source:Projected from Arabidopsis thaliana (AT1G24706) UniProtKB/Swiss-Prot;Acc:F4IAT2]","Similar to predicted protein. (Os01t0916800-00)",1,39960770,39975917,"GO:0000445;GO:0006406;GO:0003729","THO complex part of transcription export complex;mRNA export from nucleus;mRNA binding","The THO complex when it is part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp1, and Mft1, while the human complex is composed of 7 subunits. [GOC:krc, PMID:11060033, PMID:11979277, PMID:16983072];The directed movement of mRNA from the nucleus to the cytoplasm. [GOC:ma];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234]"]
["OS03T0245100-01",4.86009641560106E-3,0.10121722269219101,0.39683172676508804,"OS03G0245100","DAPB2",507.518566431807,510.001555448993,685.535679611603,654.144892476451,"no","OS03G0245100","Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10P67]","NAD(P)-binding domain containing protein. (Os03t0245100-01);Similar to Dihydrodipicolinate reductase. (Os03t0245100-02);NAD(P)-binding domain containing protein. (Os03t0245100-03)",3,7671601,7676854,"GO:0070402;GO:0008839;GO:0009089;GO:0055114;GO:0009570;GO:0008652;GO:0009536;GO:0009507;GO:0016491;GO:0019877;GO:0009085","NADPH binding;4-hydroxy-tetrahydrodipicolinate reductase;lysine biosynthetic process via diaminopimelate;oxidation-reduction process;chloroplast stroma;cellular amino acid biosynthetic process;plastid;chloroplast;oxidoreductase activity;diaminopimelate biosynthetic process;lysine biosynthetic process","Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions. [GOC:mah];Catalysis of the reaction: (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NAD(P)+ + H2O = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+. [EC:1.17.1.8];The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. [GOC:ma, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid. [GOC:go_curators]"]
["OS03T0568500-01",0.00484625438537582,0.10121722269219101,-0.347369050122519,"OS03G0568500",null,1338.28039620654,1462.67830430626,1057.66429235371,1143.9346181963,"no","OS03G0568500","Os03g0568500 protein [Source:UniProtKB/TrEMBL;Acc:Q10I13]","Uncharacterised protein family UPF0136, Transmembrane domain containing protein. (Os03t0568500-01)",3,20558776,20561694,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0109100-01",0.004856256075428071,0.10121722269219101,-1.14840962350065,"OS04G0109100",null,101.910124310572,92.639723706941,36.1010874696378,51.6646793948306,"no","OS04G0109100","OSJNBa0027H06.9 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXF5]","Concanavalin A-like lectin/glucanase domain containing protein. (Os04t0109100-01)",4,545744,553541,"GO:0030246;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","carbohydrate binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0462500-05",0.00485125566319298,0.10121722269219101,0.558262379739434,"OS04G0462500","GF14B",13883.341272504,15402.7932942848,19738.8258019078,23384.8502903477,"no","OS04G0462500","14-3-3-like protein GF14-B [Source:UniProtKB/Swiss-Prot;Acc:Q7XTE8]","Similar to 14-3-3-like protein GF14-6. (Os04t0462500-01);14-3-3 protein, Florigen receptor, Flowering (Os04t0462500-02);Similar to 14-3-3-like protein GF14-6. (Os04t0462500-03);Similar to 14-3-3-like protein GF14-6. (Os04t0462500-04);Similar to 14-3-3-like protein GF14-6. (Os04t0462500-05)",4,23104041,23107581,"GO:0019904;GO:0005737;GO:0005634","protein domain specific binding;cytoplasm;nucleus","Interacting selectively and non-covalently with a specific domain of a protein. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS04T0492800-01",4.8406543627525405E-3,0.10121722269219101,-0.8654663288231631,"OS04G0492800",null,153.907341833349,150.282218457927,72.2021749392756,94.7580341289848,"no","OS04G0492800","Os04g0492800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KJA3]","Similar to H0425E08.6 protein. (Os04t0492800-01)",4,24640500,24641442,"GO:0005509;GO:0046872","calcium ion binding;metal ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS06T0730300-01",0.00485491201299627,0.10121722269219101,-0.27591628937947904,"OS06G0730300",null,1846.88810200019,1867.20509782657,1497.70727745659,1569.85732830184,"no","OS06G0730300","Os06g0730300 protein [Source:UniProtKB/TrEMBL;Acc:Q0D9A4]","Protein of unknown function DUF829, eukaryotic family protein. (Os06t0730300-01)",6,31127430,31130681]
["OS12T0204100-01",0.00485201664162549,0.10121722269219101,-0.9249666076764921,"OS12G0204100",null,224.235862273754,233.657969794174,100.497621874938,140.671720768802,"no","OS12G0204100","Os12g0204100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y820]","Similar to Major intrinsic protein, expressed. (Os12t0204100-01)",12,5436086,5439545,"GO:0034220;GO:0006833;GO:0015250;GO:0005887;GO:0006810;GO:0005215;GO:0016020;GO:0016021","ion transmembrane transport;water transport;water channel activity;integral component of plasma membrane;transport;transporter activity;membrane;integral component of membrane","A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0652600-01",0.004880263707336551,0.10149885417736301,0.330518498846175,"OS01G0652600",null,11976.9935906448,11126.0940566773,14916.2720125876,14135.0572087611,"no","OS01G0652600","Ketol-acid reductoisomerase [Source:UniProtKB/TrEMBL;Acc:Q5VPB9]","Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase). (Os01t0652600-01)",1,26392164,26396100,"GO:0004455;GO:0009082;GO:0008652;GO:0016853;GO:0055114;GO:0046872;GO:0016491;GO:0009097;GO:0009099","ketol-acid reductoisomerase activity;branched-chain amino acid biosynthetic process;cellular amino acid biosynthetic process;isomerase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;isoleucine biosynthetic process;valine biosynthetic process","Catalysis of the reaction: (R)-2,3-dihydroxy-3-methylbutanoate + NADP+ = (S)-2-hydroxy-2-methyl-3-oxobutanoate + NADPH + H+. [EC:1.1.1.86];The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [CHEBI:22918, GOC:ai];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. [GOC:ai];The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid. [GOC:ai]"]
["OS10T0571200-02",0.004877979410762651,0.10149885417736301,-0.282247948478675,"OS10G0571200",null,3192.93318290806,3402.94151014661,2655.80441090319,2768.04093547483,"no","OS10G0571200","Plastidial pyruvate kinase 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G32440) UniProtKB/Swiss-Prot;Acc:Q93Z53]","Similar to Pyruvate kinase isozyme G, chloroplast (EC 2.7.1.40) (Fragment). (Os10t0571200-01);Similar to Pyruvate kinase. (Os10t0571200-02)",10,22640923,22646792,"GO:0006096;GO:0030955;GO:0004743;GO:0016310;GO:0016301;GO:0000287;GO:0003824;GO:0016740;GO:0009570;GO:0006468;GO:0005524;GO:0004672;GO:0009507","glycolytic process;potassium ion binding;pyruvate kinase activity;phosphorylation;kinase activity;magnesium ion binding;catalytic activity;transferase activity;chloroplast stroma;protein phosphorylation;ATP binding;protein kinase activity;chloroplast","The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Interacting selectively and non-covalently with potassium (K+) ions. [GOC:mah];Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate. [EC:2.7.1.40];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS12T0421000-01",4.88382205028482E-3,0.101503762775715,0.742852462305958,"OS12G0421000",null,1844.50120004822,2012.04143409104,2828.45183802055,3625.40028742031,"no","OS12G0421000","Heavy metal-associated domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QSQ7]","Similar to Barley stem rust resistance protein. (Os12t0421000-01)",12,13177329,13178929,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0238900-01",0.00489679183997737,0.10156604500678101,0.289449938900855,"OS01G0238900",null,1299.54874726835,1238.28430688278,1565.03092706213,1536.64317200921,"no","OS01G0238900","Os01g0238900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0F4]","Similar to Protein SOF1. (Os01t0238900-01)",1,7679009,7685849]
["OS05T0451900-01",0.00489100908487489,0.10156604500678101,0.45528779826456106,"OS05G0451900",null,441.336947111525,473.058242334081,667.990105874042,585.697165586287,"no","OS05G0451900","Os05g0451900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DHQ1]","Similar to Axi 1 (Auxin-independent growth promoter)-like protein. (Os05t0451900-01)",5,22184180,22188759,"GO:0005737;GO:0016020;GO:0016021","cytoplasm;membrane;integral component of membrane","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0322500-01",0.0048956132598721,0.10156604500678101,-0.29014460153583904,"OS09G0322500",null,1650.18999155838,1649.59998877478,1328.46937530975,1370.16514432302,"no","OS09G0322500","Os09g0322500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XL82]","Hypothetical conserved gene. (Os09t0322500-01)",9,9399112,9402405,"GO:0007165;GO:0016020;GO:0016021","signal transduction;membrane;integral component of membrane","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0104050-01",0.00490940153155871,0.10175850447230801,-0.318223488763524,"OS11G0104050",null,1235.59086531761,1208.70003763334,956.334397824208,1004.12600997522,"no","OS11G0104050","Os11g0103900 protein [Source:UniProtKB/TrEMBL;Acc:Q2RBP5]","Preprotein translocase Sec, Sec61-beta subunit, eukarya domain containing protein. (Os11t0104050-01)",11,162815,163466,"GO:0031205;GO:0005784;GO:0031204;GO:0006616;GO:0005086;GO:0015450;GO:0015031;GO:0005783;GO:0043547;GO:0006886;GO:0006810;GO:0016020;GO:0016021","endoplasmic reticulum Sec complex;Sec61 translocon complex;posttranslational protein targeting to membrane, translocation;SRP-dependent cotranslational protein targeting to membrane, translocation;ARF guanyl-nucleotide exchange factor activity;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;protein transport;endoplasmic reticulum;positive regulation of GTPase activity;intracellular protein transport;transport;membrane;integral component of membrane","An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex. [GOC:mtg_sensu, PMID:12158317, PMID:14617809];A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events. [GOC:mah, PMID:18166647];The process in which a protein translocates through the ER membrane posttranslationally. [PMID:12518317, PMID:8707814];The process during cotranslational membrane targeting wherein proteins move across a membrane. SRP and its receptor initiate the transfer of the nascent chain across the endoplasmic reticulum (ER) membrane; they then dissociate from the chain, which is transferred to a set of transmembrane proteins, collectively called the translocon. Once the nascent chain translocon complex is assembled, the elongating chain passes directly from the large ribosomal subunit into the centers of the translocon, a protein-lined channel within the membrane. The growing chain is never exposed to the cytosol and does not fold until it reaches the ER lumen. [ISBN:0716731363];Stimulates the exchange of guanyl nucleotides associated with the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:mah];Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated. [GOC:mtg_transport, ISBN:0815340729];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0822500-03",0.00491361978776989,0.101776889326065,-0.610451303202995,"OS02G0822500",null,748.357687280872,866.681777748452,500.754885244292,557.082681701104,"no","OS02G0822500","Phosphatidylinositol 4-phosphate 5-kinase 9 [Source:Projected from Arabidopsis thaliana (AT3G09920) UniProtKB/Swiss-Prot;Acc:Q8L850]","Similar to Junctophilin-2 (Junctophilin type 2) (JP-2). (Os02t0822500-01);Similar to predicted protein. (Os02t0822500-02);Similar to Junctophilin-2 (Junctophilin type 2) (JP-2). (Os02t0822500-03);Hypothetical conserved gene. (Os02t0822500-04);Similar to phosphatidylinositol-4-phosphate 5-kinase 9. (Os02t0822500-05)",2,35307400,35313636,"GO:0046854;GO:0046488;GO:0016307;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740;GO:0016308;GO:0030154;GO:0009908;GO:0007275;GO:0005975;GO:0006520;GO:0005634;GO:0005829;GO:0016020","phosphatidylinositol phosphorylation;phosphatidylinositol metabolic process;phosphatidylinositol phosphate kinase activity;phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity;1-phosphatidylinositol-4-phosphate 5-kinase activity;cell differentiation;flower development;multicellular organism development;carbohydrate metabolic process;cellular amino acid metabolic process;nucleus;cytosol;membrane","The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. [EC:2.7.1.-, PMID:9759495];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ADP + 2 H(+). [EC:2.7.1.68, RHEA:14428];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0575700-01",0.004923556299203611,0.10186746710410201,-0.553309320252034,"OS02G0575700",null,435.221423594968,368.500234300943,275.148828822645,272.551458989554,"no","OS02G0575700","Loricrin-like protein [Source:UniProtKB/TrEMBL;Acc:Q69JW8]","Similar to OSIGBa0097P08.1 protein. (Os02t0575700-01)",2,22096140,22100732]
["OS11T0132600-02",0.00492466119772057,0.10186746710410201,0.486728318400502,"OS11G0132600",null,325.474189531705,361.105631225942,489.814710661815,472.264562774561,"no","OS11G0132600","Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAZ2]","Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0132600-01);Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os11t0132600-02)",11,1484073,1491751,"GO:0046373;GO:0046556;GO:0009505;GO:0016787","L-arabinose metabolic process;alpha-L-arabinofuranosidase activity;plant-type cell wall;hydrolase activity","The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. [CHEBI:30849, GOC:jsg, GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. [EC:3.2.1.55, GOC:mf];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0886600-01",4.9322191687908405E-3,0.101885841815347,0.304025928632223,"OS01G0886600",null,1579.84357511054,1686.04297146633,2088.00884283851,1944.00503006886,"no","OS01G0886600","Os01g0886600 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8G6]","Similar to CLP protease regulatory subunit CLPX precursor. (Os01t0886600-01)",1,38520634,38526006,"GO:0005524;GO:0004176;GO:0030163;GO:0006508;GO:0006457;GO:0051082;GO:0008233;GO:0005759","ATP binding;ATP-dependent peptidase activity;protein catabolic process;proteolysis;protein folding;unfolded protein binding;peptidase activity;mitochondrial matrix","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds. [GOC:mah];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732]"]
["OS07T0124100-01",4.9297049262162105E-3,0.101885841815347,-1.55203838134175,"OS07G0124100","PSK4",67.2707586821262,58.671825014396,27.3197418689151,15.6301911965336,"no","OS07G0124100","Phytosulfokines 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR88]","Similar to Phytosulfokines 4 precursor. (Os07t0124100-01)",7,1255047,1255744,"GO:0008283;GO:0008083;GO:0030154;GO:0007275;GO:0005576","cell proliferation;growth factor activity;cell differentiation;multicellular organism development;extracellular region","The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb];The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation. [ISBN:0815316194];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0154200-01",4.93680516338443E-3,0.101911669832244,-0.43957184951079303,"OS02G0154200",null,533.128663325378,575.448214758634,391.009795202346,426.40313668716,"no","OS02G0154200","Os02g0154200 protein [Source:UniProtKB/TrEMBL;Acc:Q67IS9]","Protein kinase, core domain containing protein. (Os02t0154200-01)",2,2978855,2982356,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0617500-01",0.00495115001641455,0.10213878143247601,0.489482167382963,"OS01G0617500",null,455.496218714769,464.973702276702,696.262792070364,596.022543055263,"no","OS01G0617500","Acetyltransferase 1-like [Source:UniProtKB/TrEMBL;Acc:Q5ZDJ3]","Tetratricopeptide-like helical domain containing protein. (Os01t0617500-01);Similar to predicted protein. (Os01t0617500-02)",1,24534886,24546684,"GO:0004596;GO:0005737;GO:0016740;GO:0017196","peptide alpha-N-acetyltransferase activity;cytoplasm;transferase activity;N-terminal peptidyl-methionine acetylation","Catalysis of the reaction: acetyl-CoA + peptide = CoA + N-alpha-acetylpeptide. This reaction is the acetylation of the N-terminal amino acid residue of a peptide or protein. [EC:2.3.1.88, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The acetylation of the N-terminal methionine of proteins to form the derivative N-acetyl-L-methionine. [RESID:AA0049]"]
["OS05T0386000-01",0.00497004991119593,0.10228329532258901,"-Inf","OS05G0386000",null,40.4728743773517,163.491956841497,0,0,"no","OS05G0386000","Os05g0386000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DIJ1]","Similar to Root determined nodulation 1. (Os05t0386000-01);Similar to Root determined nodulation 1. (Os05t0386000-02);Similar to predicted protein. (Os05t0386000-03);Conserved hypothetical protein. (Os05t0386000-04)",5,18680766,18685444,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0171300-01",0.004971546659925521,0.10228329532258901,0.261527806422852,"OS07G0171300",null,2506.34538786891,2534.21110851654,2971.02192824451,3071.33257011885,"no","OS07G0171300","Os07g0171300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZA47]","Protein kinase, core domain containing protein. (Os07t0171300-01)",7,3773300,3779797,"GO:0008360;GO:0018105;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","regulation of cell shape;peptidyl-serine phosphorylation;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","Any process that modulates the surface configuration of a cell. [GOC:dph, GOC:go_curators, GOC:tb];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0654450-00",0.00496982628289084,0.10228329532258901,-1.36994626073518,"OS07G0654450",null,81.3542146553834,103.727414288868,39.4463980461277,32.1627317638982,"no","OS07G0654450","Os07g0654450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9L5]","Hypothetical conserved gene. (Os07t0654450-00)",7,27490581,27491105]
["OS09T0274900-01",4.96686213077827E-3,0.10228329532258901,-0.901096727781394,"OS09G0274900",null,5608.95431860213,4911.9640169947,2395.3559388638,3238.3802385318,"no","OS09G0274900","Os09g0274900 protein [Source:UniProtKB/TrEMBL;Acc:Q6H4D3]","Conserved hypothetical protein. (Os09t0274900-01)",9,5598755,5599840]
["OS02T0669500-01",0.00497850754517289,0.102318505607635,-0.614432120087675,"OS02G0669500",null,353.714203806764,300.643438156046,202.01306107926,225.404813407123,"no","OS02G0669500","Os02g0669500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VMN8]","Similar to H0211B05.7 protein. (Os02t0669500-01)",2,27183731,27184188]
["OS06T0258900-02",0.00498193112526131,0.102318505607635,0.316218322001294,"OS06G0258900",null,1100.28525402577,1163.41037407891,1448.87468610526,1369.56815872465,"no","OS06G0258900","Os06g0258900 protein [Source:UniProtKB/TrEMBL;Acc:Q652S1]","NAD(P)-binding domain containing protein. (Os06t0258900-01);Similar to predicted protein. (Os06t0258900-02)",6,8301780,8316896,"GO:0016832;GO:0005975;GO:0008270;GO:0003824;GO:0051287;GO:0004616;GO:0016491;GO:0055114;GO:0005634","aldehyde-lyase activity;carbohydrate metabolic process;zinc ion binding;catalytic activity;NAD binding;phosphogluconate dehydrogenase (decarboxylating) activity;oxidoreductase activity;oxidation-reduction process;nucleus","Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone. [http://www.mercksource.com/];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+. [EC:1.1.1.44];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS10T0543500-01",0.00498330506494375,0.102318505607635,-0.5595235769258721,"OS10G0543500",null,538.573896797596,448.8524628827,321.183291948002,348.811361025082,"no","OS10G0543500","Os10g0543500 protein [Source:UniProtKB/TrEMBL;Acc:Q0IW03]","Six-bladed beta-propeller, TolB-like domain containing protein. (Os10t0543500-01)",10,21224757,21226937,"GO:0016788;GO:0005783;GO:0016020;GO:0016844;GO:0009058","hydrolase activity, acting on ester bonds;endoplasmic reticulum;membrane;strictosidine synthase activity;biosynthetic process","Catalysis of the hydrolysis of any ester bond. [GOC:jl];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine. [EC:4.3.3.2, RHEA:15016];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684]"]
["OS07T0231900-01",0.00499270495814782,0.10244266076650901,0.6145328750748781,"OS07G0231900",null,179.388689819003,163.663511882262,273.197418689151,252.036833044104,"no","OS07G0231900","Os07g0231900 protein [Source:UniProtKB/TrEMBL;Acc:Q7EY28]","PDZ/DHR/GLGF domain containing protein. (Os07t0231900-01)",7,7324275,7329317]
["OS02T0116600-01",5.0143225255573805E-3,0.102751520950178,-0.8435831063118011,"OS02G0116600",null,325.194948552498,351.456129289926,185.688078546884,191.381034253011,"no","OS02G0116600","BHLH transcription factor [Source:UniProtKB/TrEMBL;Acc:Q6ZGM4]","Helix-loop-helix DNA-binding domain containing protein. (Os02t0116600-01);Helix-loop-helix DNA-binding domain containing protein. (Os02t0116600-02)",2,875964,878615,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS11T0667700-01",0.00501448408407681,0.102751520950178,-1.00594495457802,"OS11G0667700",null,282.333335681045,227.481988213711,108.303262408913,145.556155517719,"no","OS11G0667700","Os11g0667700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y544]","Similar to Protein kinase domain containing protein, expressed. (Os11t0667700-01)",11,26946159,26946885,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS04T0688300-01",0.005023141707626241,0.10282579859822501,1.23396832367008,"OS04G0688300",null,73.5185693703131,51.5543338851915,126.93185042995,167.25598454006,"no","OS04G0688300","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q7XSU8]","Haem peroxidase, plant/fungal/bacterial family protein. (Os04t0688300-01)",4,35207157,35208610,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS08T0104700-02",0.005024840184182731,0.10282579859822501,-0.327412033252639,"OS08G0104700",null,1279.00142209076,1375.92395373341,1028.49679353506,1087.38536026541,"no","OS08G0104700","Os08g0104700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJN4]","Chaperonin Cpn60/TCP-1 family protein. (Os08t0104700-01);Hypothetical conserved gene. (Os08t0104700-02)",8,250589,258757,"GO:0046854;GO:0046488;GO:0016307;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740;GO:0010008;GO:0000285;GO:0042147;GO:0005829","phosphatidylinositol phosphorylation;phosphatidylinositol metabolic process;phosphatidylinositol phosphate kinase activity;phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity;endosome membrane;1-phosphatidylinositol-3-phosphate 5-kinase activity;retrograde transport, endosome to Golgi;cytosol","The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. [EC:2.7.1.-, PMID:9759495];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The lipid bilayer surrounding an endosome. [GOC:mah];Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + ADP + 2 H(+). [EC:2.7.1.150, RHEA:13612];The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. [GOC:jl, PMID:10873832, PMID:16936697];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS10T0551600-01",0.00503531951263727,0.102971272925096,-0.301480676958611,"OS10G0551600",null,1706.10684368794,1846.61849255836,1412.73857611304,1470.01092923869,"no","OS10G0551600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FWN8]","Conserved hypothetical protein. (Os10t0551600-01)",10,21652033,21654992,"GO:0016020;GO:0016021;GO:0005747","membrane;integral component of membrane;mitochondrial respiratory chain complex I","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone. [GOC:mtg_sensu, ISBN:0198547684]"]
["OS02T0601700-01",0.00504412567626748,0.10308235963968201,-0.49288630106426407,"OS02G0601700",null,587.535546018525,561.095004181409,382.147066558295,434.072124942508,"no","OS02G0601700","Ankyrin repeat-like protein [Source:UniProtKB/TrEMBL;Acc:Q6K5G3]","Ankyrin repeat containing protein. (Os02t0601700-01)",2,23544805,23549077,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS04T0448300-02",0.00505013896392956,0.103136260445171,-1.21669780980321,"OS04G0448300",null,188.418719650299,145.449914973617,58.9750737072097,84.6773919537431,"no","OS04G0448300","Os04g0448300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCV1]","Peptidase A1 domain containing protein. (Os04t0448300-01);Peptidase A1 domain containing protein. (Os04t0448300-02)",4,22347957,22349743,"GO:0030163;GO:0006508;GO:0004190;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0583900-01",5.0586872937303405E-3,0.10322767450950701,-3.87488727654865,"OS06G0583900",null,33.6353793410631,23.6745960584405,0.9757050667469671,2.93066084935005,"no","OS06G0583900","Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q5VP91]","Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment). (Os06t0583900-01)",6,22821117,22823386,"GO:0030570;GO:0045490;GO:0046872;GO:0016829","pectate lyase activity;pectin catabolic process;metal ion binding;lyase activity","Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. [EC:4.2.2.2];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS10T0521000-01",0.005061372624222371,0.10322767450950701,0.568323335958765,"OS10G0521000",null,240.543924984572,229.540648740532,376.622155764329,320.418919528938,"no","OS10G0521000","Probable trehalase [Source:UniProtKB/Swiss-Prot;Acc:Q9FWC1]","Similar to TRE1 protein (Fragment). (Os10t0521000-01)",10,20154610,20159181,"GO:0008152;GO:0016798;GO:0016787;GO:0003824;GO:0004555;GO:0005991;GO:0005993;GO:0005886","metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity;catalytic activity;alpha,alpha-trehalase activity;trehalose metabolic process;trehalose catabolic process;plasma membrane","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: alpha,alpha-trehalose + H2O = 2 D-glucose. [EC:3.2.1.28];The chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];The chemical reactions and pathways resulting in the breakdown of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS09T0556200-00",0.005068170283995091,0.103297357249245,-0.43316658672856806,"OS09G0556200",null,730.805060228553,837.874834416111,559.079003246012,602.739248016326,"no","OS09G0556200","Os09g0556200 protein [Source:UniProtKB/TrEMBL;Acc:A3C1D8]","Similar to predicted protein. (Os09t0556200-00)",9,22098832,22102375]
["OS06T0632200-01",5.0818379219013995E-3,0.10349677827881901,"Inf","OS06G0632200",null,0,0,28.804211307413,43.7374452756378,"no","OS06G0632200","Os06g0632200 protein [Source:UniProtKB/TrEMBL;Acc:Q67VM1]","Similar to tryptophan synthase-related. (Os06t0632200-01);Similar to tryptophan synthase-related. (Os06t0632200-02)",6,25590293,25594488,"GO:0006568;GO:0004834;GO:0000162;GO:0030170","tryptophan metabolic process;tryptophan synthase activity;tryptophan biosynthetic process;pyridoxal phosphate binding","The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:0198547684];Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. [RHEA:10535];The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:0471331309, MetaCyc:TRPSYN-PWY];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732]"]
["OS06T0725200-01",0.005084729778623551,0.10349677827881901,-3.31013783197068,"OS06G0725200",null,22.7549908205521,35.3577229790803,1.95141013349393,3.9075477991334,"no","OS06G0725200","Os06g0725200 protein [Source:UniProtKB/TrEMBL;Acc:Q0D9D9]","Lipase, GDSL domain containing protein. (Os06t0725200-01)",6,30838067,30839951,"GO:0016788","hydrolase activity, acting on ester bonds","Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS02T0564000-01",0.00509245737729299,0.10352414917374801,0.29366525253112,"OS02G0564000",null,1241.45127386106,1222.84435293162,1549.41964599418,1471.19174637372,"no","OS02G0564000","Os02g0564000 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z7F5]","Similar to Glutathione S-transferase. (Os02t0564000-01)",2,21410814,21413683,"GO:0004364;GO:0009072;GO:0005737;GO:0003824;GO:0016740","glutathione transferase activity;aromatic amino acid family metabolic process;cytoplasm;catalytic activity;transferase activity","Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0271000-00",5.09285140770303E-3,0.10352414917374801,-1.2225548909857,"OS06G0271000",null,64.2129969238477,72.0531184387319,29.271152002409,29.1220353831727,"no","OS06G0271000","Os06g0271000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVH1]","UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein. (Os06t0271000-00)",6,9101145,9102125,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0110400-01",0.00511954113334222,0.10358425212309401,0.35392516514090405,"OS01G0110400",null,631.937430044216,662.888689636334,819.592256067452,835.238342064763,"no","OS01G0110400","Os01g0110400 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASK5]","Similar to Acetyl-CoA C-acetyltransferase. (Os01t0110400-01)",1,549157,552574,"GO:0006635;GO:0005829;GO:0016746;GO:0016747;GO:0008152;GO:0003824;GO:0016740;GO:0003985","fatty acid beta-oxidation;cytosol;transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;transferase activity;acetyl-CoA C-acetyltransferase activity","A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:0198506732, MetaCyc:FAO-PWY];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA. [EC:2.3.1.9]"]
["OS01T0926400-02",0.00511501468791914,0.10358425212309401,-0.9946443776639491,"OS01G0926400",null,607.213531417202,669.640817915862,264.019807118282,376.781763376419,"no","OS01G0926400","Probable glucuronosyltransferase Os01g0926400 [Source:UniProtKB/Swiss-Prot;Acc:Q8S1X9]","Similar to Pectin-glucuronyltransferase. (Os01t0926400-01);Similar to Secondary cell wall-related glycosyltransferase family 47. (Os01t0926400-02);Similar to Pectin-glucuronyltransferase. (Os01t0926400-03)",1,40615704,40619630,"GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0071555;GO:0016740;","transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity;","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];"]
["OS02T0173900-01",5.1170112907371204E-3,0.10358425212309401,0.265357283587411,"OS02G0173900",null,1907.02408324633,1896.02634520206,2287.05267645489,2283.96168859347,"no","OS02G0173900","Os02g0173900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFG7]","Similar to SSADH. (Os02t0173900-01)",2,4044609,4052188,"GO:0006081;GO:0004030;GO:0005739;GO:0005759;GO:0055114;GO:0016491;GO:0008152;GO:0004777;GO:0009013;GO:0051287;GO:0006540;GO:0009450","cellular aldehyde metabolic process;aldehyde dehydrogenase [NAD(P)+] activity;mitochondrion;mitochondrial matrix;oxidation-reduction process;oxidoreductase activity;metabolic process;succinate-semialdehyde dehydrogenase (NAD+) activity;succinate-semialdehyde dehydrogenase [NAD(P)+] activity;NAD binding;glutamate decarboxylation to succinate;gamma-aminobutyric acid catabolic process","The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. [GOC:go_curators, ISBN:0198506732];Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+. [EC:1.2.1.5];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: succinate semialdehyde + NAD+ + H2O = succinate + NADH + H+. [EC:1.2.1.24];Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O = succinate + NAD(P)H + H+. [EC:1.2.1.16];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes. [PMID:12740438];The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. [GOC:ai]"]
["OS02T0525600-01",0.005109086848643521,0.10358425212309401,-0.25909572120053803,"OS02G0525600",null,5051.42242467602,5029.30766702349,4133.08666274015,4290.48748344847,"no","OS02G0525600","Os02g0525600 protein [Source:UniProtKB/TrEMBL;Acc:Q0E0T0]","Similar to H0502B11.1 protein. (Os02t0525600-01)",2,19202942,19204204]
["OS03T0773800-02",5.1031554368638505E-3,0.10358425212309401,0.721499944495535,"OS03G0773800",null,846.30764911744,772.87617172326,1383.64082678573,1286.22404227471,"no","OS03G0773800","Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q7XZW5]","Similar to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH). (Os03t0773800-01);Similar to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH). (Os03t0773800-02);Similar to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH). (Os03t0773800-03)",3,32086041,32089677,"GO:0006099;GO:0030060;GO:0016615;GO:0006108;GO:0016616;GO:0055114;GO:0016491;GO:0005975;GO:0019752;GO:0003824","tricarboxylic acid cycle;L-malate dehydrogenase activity;malate dehydrogenase activity;malate metabolic process;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process;carboxylic acid metabolic process;catalytic activity","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. [EC:1.1.1.37];Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. [GOC:mah, ISBN:0582227089];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0260600-01",0.005116766252625531,0.10358425212309401,-1.33679520077103,"OS08G0260600",null,1569.65103591628,1232.10832530232,437.115869902641,672.098221450944,"no","OS08G0260600","Os08g0260600 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z5Z9]","Tetraspanin domain containing protein. (Os08t0260600-01)",8,9784270,9786922,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0321200-00",0.00509986649220954,0.10358425212309401,-1.14926281486652,"OS09G0321200",null,88.6750909900754,101.903696077635,35.1253824028908,50.7981213887341,"no","OS09G0321200","Os09g0321200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLA9]","Similar to carotenoid cleavage dioxygenase. (Os09t0321200-00)",9,9251224,9255066,"GO:0016702;GO:0046872;GO:0055114","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;metal ion binding;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS12T0128700-01",0.00513221399484282,0.103771940417232,-0.27718034488125,"OS12G0128700",null,6819.2209669506,7136.89979891068,5632.93962036135,5883.68259792633,"no","OS12G0128700","Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QY88]","Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os12t0128700-01)",12,1359827,1366366,"GO:0009505;GO:0046373;GO:0046556","plant-type cell wall;L-arabinose metabolic process;alpha-L-arabinofuranosidase activity","A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. [CHEBI:30849, GOC:jsg, GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. [EC:3.2.1.55, GOC:mf]"]
["OS04T0585100-01",0.00513921478429683,0.10384476857793401,0.39480248644895605,"OS04G0585100",null,628.913171318366,640.239186229697,885.576543858918,783.057698683003,"no","OS04G0585100","Protein S-acyltransferase 21 [Source:Projected from Arabidopsis thaliana (AT2G33640) UniProtKB/Swiss-Prot;Acc:Q6DR03]","Zinc finger, DHHC-type domain containing protein. (Os04t0585100-01)",4,29556896,29563246,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0473500-02",0.005155600713502011,0.10410701453993,-0.28448412752938,"OS05G0473500",null,1775.46060381894,1816.68740294836,1438.86936379789,1510.41037215572,"no","OS05G0473500","Os05g0473500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DHD7]","Exo70 exocyst complex subunit family protein. (Os05t0473500-01);Similar to protein binding protein. (Os05t0473500-02)",5,23254949,23257541,"GO:0000145;GO:0006887","exocyst;exocytosis","A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. [GOC:cilia, PMID:15292201, PMID:27243008, PMID:9700152];A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. [GOC:mah, ISBN:0716731363, PMID:22323285]"]
["OS02T0593700-02",0.0051843233298634,0.104550731504867,0.8741426020488011,"OS02G0593700",null,1488.47713856553,1084.73669454145,2444.1108030866,2272.38031711154,"no","OS02G0593700","Os02g0593700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZH84]","Similar to TA4 protein (Fragment). (Os02t0593700-01);Similar to Ubiquitin-associated protein. (Os02t0593700-02);Similar to Ubiquitin-associated protein. (Os02t0593700-03);Similar to TA4 protein (Fragment). (Os02t0593700-04)",2,22981859,22987590,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS05T0122800-01",0.00518483416073934,0.104550731504867,-0.35609469029582,"OS05G0122800",null,1614.86808266593,1640.76175298997,1189.31319106664,1354.23421759027,"no","OS05G0122800","Os05g0122800 protein [Source:UniProtKB/TrEMBL;Acc:Q75L87]","Tetraspanin domain containing protein. (Os05t0122800-01);Similar to senescence-associated protein. (Os05t0122800-02);Tetraspanin domain containing protein. (Os05t0122800-03)",5,1254602,1258729,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0468100-02",5.1907177281720705E-3,0.104550731504867,1.1490157222346,"OS08G0468100","NIA1",313.977635473278,204.051792159298,577.633791381408,571.161453445798,"no","OS08G0468100","Nitrate reductase [NADH] 1 [Source:UniProtKB/Swiss-Prot;Acc:P16081]","Similar to Nitrate reductase. (Os08t0468100-01);Similar to Nitrate reductase. (Os08t0468100-02);Similar to Nitrate reductase. (Os08t0468100-03)",8,23033230,23038585,"GO:0042128;GO:0030151;GO:0055114;GO:0046872;GO:0016491;GO:0020037;GO:0004128;GO:0006809;GO:0050464;GO:0043546;GO:0009703;GO:0005829","nitrate assimilation;molybdenum ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;heme binding;cytochrome-b5 reductase activity, acting on NAD(P)H;nitric oxide biosynthetic process;nitrate reductase (NADPH) activity;molybdopterin cofactor binding;nitrate reductase (NADH) activity;cytosol","The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899];Interacting selectively and non-covalently with molybdenum (Mo) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5). [EC:1.6.2.2, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. [GOC:ai];Catalysis of the reaction: nitrite + NADP+ + H2O = nitrate + NADPH + H+. [EC:1.7.1.3, MetaCyc:NITRATE-REDUCTASE-NADPH-RXN];Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [ISSN:09498257];Catalysis of the reaction: nitrite + NAD+ + H2O = nitrate + NADH + H+. [EC:1.7.1.1];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS11T0666100-01",0.005191262755069491,0.104550731504867,-1.41004424442591,"OS11G0666100",null,96.6008239197092,64.8478065948587,25.5852130969686,35.1679301922006,"no","OS11G0666100","Os11g0666100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTB7]","Similar to Receptor kinase-like protein. (Os11t0666100-01)",11,26875368,26876085]
["OS04T0559200-01",5.20245426784625E-3,0.10470710328803601,0.453938438867973,"OS04G0559200",null,498.978600018518,578.997653338837,730.723581493458,745.860833407889,"no","OS04G0559200","Os04g0559200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JB34]","Protein of unknown function DUF3741 domain containing protein. (Os04t0559200-01);Hypothetical conserved gene. (Os04t0559200-02);Hypothetical conserved gene. (Os04t0559200-03)",4,28016067,28021961]
["OS01T0187600-01",0.005213721681699071,0.10472690652154501,-0.798645854813505,"OS01G0187600",null,147.791818316792,130.724943453128,77.0807002730104,83.0353907315847,"no","OS01G0187600","Os01g0187600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UZ77]","Similar to Cytokinin dehydrogenase 1. (Os01t0187600-01)",1,4697238,4699036,"GO:0009690;GO:0019139;GO:0016614;GO:0050660;GO:0055114;GO:0003824","cytokinin metabolic process;cytokinin dehydrogenase activity;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidation-reduction process;catalytic activity","The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. [ISBN:0387969845];Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. [EC:1.5.99.12];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS10T0187500-02",0.005207164079563811,0.10472690652154501,-1.13924177759638,"OS10G0187500",null,345.523383928931,406.889526570291,194.331987844981,147.26205755121,"no","OS10G0187500","Os10g0187500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRJ1]","Similar to Protein kinase domain containing protein, expressed. (Os10t0187500-01);Similar to Protein kinase domain containing protein, expressed. (Os10t0187500-02)",10,6018131,6019184,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS12T0166700-01",5.21072177748163E-3,0.10472690652154501,-0.378735380995245,"OS12G0166700",null,759.469563708534,718.882863820832,564.372415891313,572.645397349064,"no","OS12G0166700","Os12g0166700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7F2]","Conserved hypothetical protein. (Os12t0166700-01)",12,3383995,3385735,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0831250-00",0.005225111232669261,0.104886726925434,2.41467518600304,"OS01G0831250",null,15.2480059454587,6.73670142729557,46.0548263281293,71.1675038326767,"no","OS01G0831250",null,"Hypothetical gene. (Os01t0831250-00)",1,35586264,35588352]
["OS03T0107300-01",0.00523626855213764,0.104900721556031,-1.15285556143649,"OS03G0107300","LSI2",37735.9192685208,27181.657228113,12712.425742807,16483.2272865486,"no","OS03G0107300","Silicon efflux transporter LSI2 [Source:UniProtKB/Swiss-Prot;Acc:Q10SY9]","Anion transporter, Silicon efflux transporter, Arsenic species (As) uptake (Os03t0107300-01)",3,430697,432874,"GO:0005886;GO:0006810;GO:0055085;GO:0016021;GO:0016020","plasma membrane;transport;transmembrane transport;integral component of membrane;membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0634500-01",0.005233593561710791,0.104900721556031,0.41248383739256106,"OS04G0634500",null,690.034903451506,592.894231724423,848.863408069861,858.683628859564,"no","OS04G0634500","Os04g0634500 protein [Source:UniProtKB/TrEMBL;Acc:B7EJR3]","Similar to H0315F07.6 protein. (Os04t0634500-01)",4,32278194,32281408,"GO:0004674;GO:0005524;GO:0000166;GO:0006468;GO:0004672","protein serine/threonine kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS09T0545300-01",0.005239542455305841,0.104900721556031,1.40417964028825,"OS09G0545300","SAUR39",33.6353793410631,20.5866052682091,78.0564053397573,65.4514256354844,"no","OS09G0545300","Auxin-responsive protein SAUR36 [Source:UniProtKB/Swiss-Prot;Acc:B7F8P5]","SAUR family protein, Negative regulator of auxin synthesis and transport (Os09t0545300-01)",9,21565770,21566461,"GO:2000012;GO:0046621;GO:0040008;GO:0005737;GO:0009733;GO:0007275;GO:0009734","regulation of auxin polar transport;negative regulation of organ growth;regulation of growth;cytoplasm;response to auxin;multicellular organism development;auxin-activated signaling pathway","Any process that modulates the frequency, rate or extent of auxin polar transport. [GOC:obol];Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism. [GOC:bf, GOC:tb];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826]"]
["OS12T0126300-00",0.00523496970306455,0.104900721556031,0.5582325971213791,"OS12G0126300",null,267.083631976021,249.697985316886,371.65256249073,389.289888688814,"no","OS12G0126300","Os12g0126300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6G4]","Similar to AP2 domain containing protein, expressed. (Os12t0126300-00)",12,1269804,1274766,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0006109;GO:0006110;GO:0006629;GO:0008610;GO:0009744;GO:0019432;GO:1901959","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;regulation of carbohydrate metabolic process;regulation of glycolytic process;lipid metabolic process;lipid biosynthetic process;response to sucrose;triglyceride biosynthetic process;positive regulation of cutin biosynthetic process","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates. [GOC:go_curators];Any process that modulates the frequency, rate or extent of glycolysis. [GOC:go_curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl];The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol. [ISBN:0198506732];Any process that activates or increases the frequency, rate or extent of cutin biosynthetic process. [GOC:tb, GOC:TermGenie, PMID:23243127]"]
["OS09T0471100-01",0.00524971077755414,0.10503547064560201,-0.712795099802751,"OS09G0471100",null,272.879457049337,243.573118069503,166.269133610071,148.837641781958,"no","OS09G0471100","Peroxidase 17 [Source:Projected from Arabidopsis thaliana (AT2G22420) UniProtKB/Swiss-Prot;Acc:Q9SJZ2]","Similar to Peroxidase 17 precursor (EC 1.11.1.7) (Atperox P17) (ATP25a). (Os09t0471100-01)",9,17932737,17935811,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0005829","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;cytosol","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS03T0180800-01",5.2600330069727304E-3,0.105104335139981,2.55830788138735,"OS03G0180800",null,21.4043323079492,9.2639723706941,68.2993546722877,112.341999225085,"no","OS03G0180800","Os03g0180800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTW7]","TIFY domain-containing transcriptional regulator, Salt and dehydration stress tolerance (Os03t0180800-01)",3,4232004,4233038,"GO:2000022;GO:1903507;GO:0031347;GO:0009611;GO:0003714;GO:0005515;GO:0005634;GO:0006355;GO:0006351","regulation of jasmonic acid mediated signaling pathway;negative regulation of nucleic acid-templated transcription;regulation of defense response;response to wounding;transcription corepressor activity;protein binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of jasmonic acid mediated signaling pathway. [GOC:obol];Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription. [GO_REF:0000058, GOC:pr, GOC:TermGenie, GOC:txnOH, GOC:vw];Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0529100-01",5.2576649479125406E-3,0.105104335139981,-0.40832888029045,"OS04G0529100",null,596.2635428643,622.744809363326,479.956281889589,438.561228921804,"no","OS04G0529100","Os04g0529100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBJ4]","Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os04t0529100-01)",4,26438670,26440540,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0480900-01",0.005266009717302,0.105154986198046,0.49248182223946,"OS02G0480900",null,472.19497754652,536.285420671979,666.323309346433,752.470425668781,"no","OS02G0480900","Os02g0480900 protein [Source:UniProtKB/TrEMBL;Acc:Q6K2L9]","LsmAD domain domain containing protein. (Os02t0480900-01);Hypothetical conserved gene. (Os02t0480900-02);Hypothetical conserved gene. (Os02t0480900-03)",2,16537316,16545691,"GO:0003723;GO:0010494;GO:0010603;GO:0034063","RNA binding;cytoplasmic stress granule;regulation of cytoplasmic mRNA processing body assembly;stress granule assembly","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress. [GOC:ans, PMID:17284590, PMID:17601829, PMID:17967451, PMID:20368989];Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. [GOC:dph, GOC:krc, GOC:tb];The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule. [GOC:mah, PMID:17392519]"]
["OS01T0695800-01",0.005274217425311691,0.105250091951746,2.2684541766006,"OS01G0695800",null,32.6161254216369,13.3812934243359,111.230377609154,110.388225325518,"no","OS01G0695800","Os01g0695800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JK51]","Similar to MDR-like ABC transporter. (Os01t0695800-01)",1,28786544,28787701,"GO:0016887;GO:0005524;GO:0000166","ATPase activity;ATP binding;nucleotide binding","Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS01T0122200-01",5.2886449321653305E-3,0.10527472869974501,5.35837839436267,"OS01G0122200",null,0,1.02933026341046,17.4446048432912,24.7821169070603,"no","OS01G0122200","Os01g0122200 protein [Source:UniProtKB/TrEMBL;Acc:Q9ART8]","Seven In Absentia Homolog-type domain containing protein. (Os01t0122200-01)",1,1254028,1255635,"GO:0061630;GO:0016567;GO:0007275;GO:0006511;GO:0046872;GO:0005634;GO:0008270","ubiquitin protein ligase activity;protein ubiquitination;multicellular organism development;ubiquitin-dependent protein catabolic process;metal ion binding;nucleus;zinc ion binding","Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0670700-03",0.0052961265387375,0.10527472869974501,-0.35479850780925204,"OS03G0670700",null,21911.1146279671,20158.8472879745,16166.7476021586,16731.0728194223,"no","OS03G0670700","Os03g0670700 protein [Source:UniProtKB/TrEMBL;Acc:Q10FE7]","Similar to Glycine-rich RNA-binding, abscisic acid-inducible protein. (Os03t0670700-01);Similar to Glycine-rich protein. (Os03t0670700-02);Similar to Glycine rich RNA binding protein. (Os03t0670700-03);Similar to Glycine-rich protein. (Os03t0670700-04)",3,26460057,26461156,"GO:0003723;GO:0003676;GO:0016310;GO:0016301","RNA binding;nucleic acid binding;phosphorylation;kinase activity","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS03T0837800-01",0.00529572946173579,0.10527472869974501,1.1669192873627199,"OS03G0837800",null,34.8643039189842,44.6727469231158,87.6389106476373,90.9469996104825,"no","OS03G0837800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q851M5]","Endoplasmic reticulum ERp29-type, C-terminal domain containing protein. (Os03t0837800-01)",3,35208499,35211344,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0482100-00",0.005286979364163741,0.10527472869974501,1.30158028301231,"OS04G0482100","MSRA2-2",32.8794901969504,24.0329329023416,73.4344890324995,66.8539178660682,"no","OS04G0482100","Peptide methionine sulfoxide reductase A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XUP6]","Similar to H0510A06.16 protein. (Os04t0482100-00)",4,24109091,24111210,"GO:0005829;GO:0005737;GO:0055114;GO:0016491;GO:0008113","cytosol;cytoplasm;oxidation-reduction process;oxidoreductase activity;peptide-methionine (S)-S-oxide reductase activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin, and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the S enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin. [EC:1.8.4.11, GOC:mah, GOC:vw, PMID:11169920]"]
["OS10T0390800-01",0.005290070229545351,0.10527472869974501,-0.434457269920535,"OS10G0390800",null,521.966392082528,517.753122495459,364.740094622772,404.623310661308,"no","OS10G0390800","Os10g0390800 protein [Source:UniProtKB/TrEMBL;Acc:Q0IXY8]","Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3) (EREBP-3) (AtERF3). (Os10t0390800-01)",10,12992051,12993413,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0136200-02",0.005291766118803521,0.10527472869974501,1.04170485605303,"OS12G0136200",null,130.258929492069,145.512086340005,331.767842834062,235.950631761215,"no","OS12G0136200","Os12g0136200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QY16]","Similar to RNA recognition motif family protein, expressed. (Os12t0136200-01);Similar to RNA recognition motif family protein, expressed. (Os12t0136200-02);Similar to RNA recognition motif family protein, expressed. (Os12t0136200-03)",12,1755564,1759670,"GO:0003723;GO:0003676;GO:0003700;GO:0006355;GO:0016020;GO:0016021","RNA binding;nucleic acid binding;transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated;membrane;integral component of membrane","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0724300-01",5.3030038804080006E-3,0.10533612731726,-0.34908489528368103,"OS03G0724300",null,1337.26114228711,1495.61687273539,1079.12980382215,1144.91150514608,"no","OS03G0724300","Os03g0724300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W3C8]","Tyrosine protein kinase domain containing protein. (Os03t0724300-01)",3,29426411,29430915,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0666400-01",5.3061108909813704E-3,0.10533612731726,0.99336109664036,"OS06G0666400",null,49.9434420518816,43.2318710632392,93.6676864077088,91.8273732796348,"no","OS06G0666400","Os06g0666400 protein [Source:UniProtKB/TrEMBL;Acc:Q655W4]","VQ domain containing protein. (Os06t0666400-01)",6,27594625,27595417]
["OS05T0472700-01",0.00531329086726874,0.105341766759763,1.23095694253942,"OS05G0472700","ZIP5",314.949461102682,227.481988213711,537.613491777579,735.595873186862,"no","OS05G0472700","Zinc transporter 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6L8G0]","Similar to Metal transport protein. (Os05t0472700-01)",5,23216442,23218934,"GO:0005886;GO:0071577;GO:0005385;GO:0046873;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0006829","plasma membrane;zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;metal ion transmembrane transporter activity;metal ion transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;zinc II ion transport","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS06T0125600-01",0.00531177664812945,0.105341766759763,0.8372000594831721,"OS06G0125600",null,68.2900126015523,79.2584302826051,125.865953610359,137.741059919452,"no","OS06G0125600","Os06g0125600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WS99]","Hypothetical conserved gene. (Os06t0125600-01)",6,1377416,1379454,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS10T0467900-01",0.00531769380178336,0.10536068808825201,-1.18633317745306,"OS10G0467900",null,102.944645862042,79.2584302826051,34.1496773361438,45.9136866398174,"no","OS10G0467900","Os10g0467900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVI7]","Protein kinase, catalytic domain domain containing protein. (Os10t0467900-01)",10,17267138,17273224,"GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0106300-01",0.005332597611634951,0.10538186985763501,0.851480060320637,"OS01G0106300",null,105.964570257137,138.485629159568,202.163035559518,238.910940663161,"no","OS01G0106300","Os01g0106300 protein [Source:UniProtKB/TrEMBL;Acc:Q9FTN6]","Similar to Isoflavone reductase homolog IRL (EC 1.3.1.-). (Os01t0106300-01)",1,322591,323923]
["OS01T0711400-01",0.00533153090164666,0.10538186985763501,-0.28499537307029105,"OS01G0711400",null,10552.9084474517,10909.8901882457,8687.60093012925,8927.86744694929,"no","OS01G0711400","Os01g0711400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7A3]","Similar to Victorin binding protein. (Os01t0711400-01)",1,29563666,29566585,"GO:0006546;GO:0004375;GO:0055114;GO:0003824","glycine catabolic process;glycine dehydrogenase (decarboxylating) activity;oxidation-reduction process;catalytic activity","The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. [GOC:go_curators];Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2. [EC:1.4.4.2];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0465400-01",0.005332146234442951,0.10538186985763501,-0.281219055163185,"OS02G0465400",null,3666.25634817588,3848.66585489169,2977.85186371174,3206.14296918895,"no","OS02G0465400","7-dehydrocholesterol reductase [Source:Projected from Arabidopsis thaliana (AT1G50430) UniProtKB/Swiss-Prot;Acc:Q9LDU6]","Similar to 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5 protein). (Os02t0465400-01)",2,15641302,15647376,"GO:0030176;GO:0016126;GO:0016132;GO:0016628;GO:0055114;GO:0016020;GO:0016021;GO:0009918","integral component of endoplasmic reticulum membrane;sterol biosynthetic process;brassinosteroid biosynthetic process;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;oxidation-reduction process;membrane;integral component of membrane;sterol delta7 reductase activity","The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces NAD or NADP. [GOC:jl];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: 5-dehydroepisterol = 24-methylenecholesterol. [ISBN:0943088399]"]
["OS02T0582100-00",0.00534290771175296,0.10538186985763501,-0.9012894368422381,"OS02G0582100",null,297.622144472437,324.239032974294,139.525824544816,193.423616057103,"no","OS02G0582100","Os02g0582100 protein [Source:UniProtKB/TrEMBL;Acc:B9F0R9]","Conserved hypothetical protein. (Os02t0582100-00)",2,22436124,22440885]
["OS02T0658800-01",0.005328951476229381,0.10538186985763501,-0.686043585682872,"OS02G0658800","EXPB11",1062.71875427393,1260.65083290278,655.319115253037,788.785322345459,"no","OS02G0658800","Expansin-B11 [Source:UniProtKB/Swiss-Prot;Acc:Q6H676]","Beta-expansin. (Os02t0658800-01)",2,26648837,26650582,"GO:0019953;GO:0005618;GO:0005576;GO:0016020;GO:0071555","sexual reproduction;cell wall;extracellular region;membrane;cell wall organization","A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. [GOC:jl, http://en.wikipedia.org/wiki/Sexual_reproduction, ISBN:0387520546];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS02T0669000-01",0.005336278537371611,0.10538186985763501,-0.403530622181178,"OS02G0669000",null,935.67509803321,819.346889674723,645.916754186492,680.890203998994,"no","OS02G0669000","Os02g0669000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VMT8]","Lipase, GDSL domain containing protein. (Os02t0669000-01)",2,27158353,27162721,"GO:0016788;GO:0016787","hydrolase activity, acting on ester bonds;hydrolase activity","Catalysis of the hydrolysis of any ester bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0180100-01",0.005341544647973991,0.10538186985763501,-0.5852470295408521,"OS03G0180100",null,1521.74610170325,1689.13096225656,968.875131279738,1171.28745279024,"no","OS03G0180100","Os03g0180100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTW5]","Protein of unknown function DUF1677, plant domain containing protein. (Os03t0180100-01)",3,4199851,4200735]
["OS11T0222000-01",0.005364437058964631,0.10573824582289501,-0.6169716691988261,"OS11G0222000",null,644.78266651282,752.266950424413,417.601768567702,493.327909640591,"no","OS11G0222000","Os11g0222000 protein [Source:UniProtKB/TrEMBL;Acc:Q2R8P3]","Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein. (Os11t0222000-01)",11,6381668,6385437,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0490600-01",5.36832281930405E-3,0.105743504888734,-0.344695613207181,"OS04G0490600",null,1110.57858488283,1211.34404401792,884.081750391965,944.372191700201,"no","OS04G0490600","Os04g0490600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JC58]","Nucleotide-sugar transporter family protein. (Os04t0490600-01)",4,24515450,24521611,"GO:0015992;GO:0005351;GO:0008643;GO:0000139;GO:0016021;GO:0016020","proton transport;sugar:proton symporter activity;carbohydrate transport;Golgi membrane;integral component of membrane;membrane","The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0147800-01",0.00537162606661809,0.105743504888734,-0.6666959093361461,"OS11G0147800",null,6566.20605699407,7256.41785644935,3862.11764633902,4845.41327146534,"no","OS11G0147800","Os11g0147800 protein [Source:UniProtKB/TrEMBL;Acc:Q2RAK8]","Similar to Wali7 protein (Fragment). (Os11t0147800-01);Similar to Wali7 protein (Fragment). (Os11t0147800-02)",11,2204302,2207780]
["OS01T0880200-04",0.00538552033535215,0.105948755496252,-0.6349300633560071,"OS01G0880200",null,424.846628971916,411.269043456273,240.187258137851,298.247849951266,"no","OS01G0880200","Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q5NA53]","Glycosyl transferase, family 8 protein. (Os01t0880200-01);Similar to secondary cell wall-related glycosyltransferase family 8. (Os01t0880200-02);Similar to cDNA clone:J013112C08, full insert sequence. (Os01t0880200-03);Similar to cDNA clone:J013112C08, full insert sequence. (Os01t0880200-04)",1,38197022,38202612,"GO:0016757;GO:0016740;GO:0016020;GO:0016021","transferase activity, transferring glycosyl groups;transferase activity;membrane;integral component of membrane","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0588500-01",5.3977244690717905E-3,0.10612051350005201,0.7723273525008171,"OS04G0588500",null,138.618533041957,106.021017131277,212.703704550839,205.146259454503,"no","OS04G0588500","Os04g0588500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WE12]","Hypothetical gene. (Os04t0588500-01)",4,29742314,29750579]
["OS01T0728300-01",0.00540604414494743,0.10621573036426601,1.3256265244949699,"OS01G0728300",null,58.0974734072908,34.9972289559555,117.084608009636,116.249547024219,"no","OS01G0728300","Cytochrome P450-like [Source:UniProtKB/TrEMBL;Acc:Q9AX23]","Similar to Cytochrome P450 monooxygenase CYP72A5 (Fragment). (Os01t0728300-01)",1,30372204,30376912,"GO:0004497;GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016020;GO:0016021","monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;membrane;integral component of membrane","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0575500-01",0.00540968205776029,0.106218898604558,1.3839648988506101,"OS02G0575500",null,48.1616414346849,53.0593826285172,163.459201099497,100.712123787408,"no","OS02G0575500","Os02g0575500 protein [Source:UniProtKB/TrEMBL;Acc:Q69S79]","Similar to ABC transporter-like. (Os02t0575500-01);Similar to ATATH13. (Os02t0575500-02)",2,22077489,22085057,"GO:0016020;GO:0016021;GO:0034599;GO:0046467;GO:0009507;GO:0009941;GO:0006979;GO:0007623;GO:0009644;GO:0010150;GO:0042542;GO:0046686;GO:0055072;GO:1901031;GO:1990641","membrane;integral component of membrane;cellular response to oxidative stress;membrane lipid biosynthetic process;chloroplast;chloroplast envelope;response to oxidative stress;circadian rhythm;response to high light intensity;leaf senescence;response to hydrogen peroxide;response to cadmium ion;iron ion homeostasis;regulation of response to reactive oxygen species;response to iron ion starvation","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah];The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Any biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:bf, GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:go_curators];The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:0387987819];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];Any process that modulates the frequency, rate or extent of response to reactive oxygen species. [GOC:kmv, GOC:TermGenie];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of iron ion. [PMID:16208485]"]
["OS02T0653200-01",0.00541895206335534,0.10627700367263901,-0.8698797036597841,"OS02G0653200",null,2315.74490493622,2527.00579667267,1118.15800649202,1531.75873726029,"no","OS02G0653200","Os02g0653200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KFT0]","Cupredoxin domain containing protein. (Os02t0653200-01)",2,26343570,26344263,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS06T0708300-01",0.0054195984459928,0.10627700367263901,-0.30394552820724,"OS06G0708300",null,1467.45858482127,1468.16240157637,1139.62351796046,1238.32946089206,"no","OS06G0708300","Os06g0708300 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9I1]","Similar to RER1A protein. (Os06t0708300-01)",6,29967994,29970514,"GO:0006890;GO:0016021;GO:0016020","retrograde vesicle-mediated transport, Golgi to ER;integral component of membrane;membrane","The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0509600-02",0.00542395830939818,0.106294274707334,0.47878148283044,"OS04G0509600","AMT1-1",1952.62717233199,1838.6023519755,2425.21825897687,2858.11086091559,"no","OS04G0509600","Ammonium transporter 1 member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XQ12]","Ammonium transporter, Ammonium uptake, Ammonium transport (Os04t0509600-01);Similar to OSIGBa0157K09-H0214G12.4 protein. (Os04t0509600-02)",4,25500515,25502557,"GO:0072488;GO:0015696;GO:0008519;GO:0006810;GO:0016020;GO:0016021;GO:0005887;GO:0015695","ammonium transmembrane transport;ammonium transport;ammonium transmembrane transporter activity;transport;membrane;integral component of membrane;integral component of plasma membrane;organic cation transport","The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+. [GOC:mah];The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [ISBN:0198506732];Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [GOC:go_curators, ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage. [GOC:ai]"]
["OS03T0832600-01",0.0054376151747856,0.106493601807724,0.26435029918270203,"OS03G0832600",null,1823.44526185339,1869.26375835339,2231.43748765031,2203.85695871124,"no","OS03G0832600","Galactokinase [Source:Projected from Arabidopsis thaliana (AT3G06580) UniProtKB/Swiss-Prot;Acc:Q9SEE5]","Similar to Galactokinase (EC 2.7.1.6) (Galactose kinase). (Os03t0832600-01)",3,34974719,34980179,"GO:0004335;GO:0006012;GO:0046835;GO:0016301;GO:0016310;GO:0016773;GO:0005737;GO:0005524;GO:0008152;GO:0005534;GO:0005829","galactokinase activity;galactose metabolic process;carbohydrate phosphorylation;kinase activity;phosphorylation;phosphotransferase activity, alcohol group as acceptor;cytoplasm;ATP binding;metabolic process;galactose binding;cytosol","Catalysis of the reaction: D-galactose + ATP = alpha-D-galactose 1-phosphate + ADP + 2 H(+). [EC:2.7.1.6, RHEA:13556];The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. [ISBN:0198506732];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Interacting selectively and non-covalently with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides. [CHEBI:28260, GOC:jl, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS03T0250000-02",5.45796342077346E-3,0.10653247580295101,-0.45946008219738804,"OS03G0250000",null,682.407786266113,802.385053936552,527.873210351419,551.954823369086,"no","OS03G0250000","39 kDa EF-Hand containing protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10P20]","Conserved hypothetical protein. (Os03t0250000-01);Conserved hypothetical protein. (Os03t0250000-02)",3,7914611,7918255,"GO:0005509;","calcium ion binding;","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];"]
["OS03T0752700-01",0.00546052163876085,0.10653247580295101,0.265615066541987,"OS03G0752700",null,1936.58244690969,1937.19955573848,2385.59888819633,2271.26215824629,"no","OS03G0752700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7Y025]","Heat shock protein DnaJ, N-terminal domain containing protein. (Os03t0752700-01)",3,31027540,31031647]
["OS07T0409900-02",0.00545436699554613,0.10653247580295101,-0.915259791391521,"OS07G0409900","CPK18",153.237819227054,175.415756848837,75.0542059920148,99.213819749567,"no","OS07G0409900","Calcium-dependent protein kinase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q0D715]","Plasma membrane-associated calcium-dependent protein kinase, Direct phosphorylation and activation of MAPK, Negative reguration of rice immunity (Os07t0409900-01);Similar to Calcium-dependent protein kinase. (Os07t0409900-02)",7,12795040,12803562,"GO:0046777;GO:0009738;GO:0010857;GO:0009931;GO:0005516;GO:0004683;GO:0050832;GO:0005515;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0006952;GO:0005886;GO:0016310;GO:0016301;GO:0005509;GO:0046872;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016740","protein autophosphorylation;abscisic acid-activated signaling pathway;calcium-dependent protein kinase activity;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;defense response to fungus;protein binding;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;defense response;plasma membrane;phosphorylation;kinase activity;calcium ion binding;metal ion binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;transferase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Catalysis of the reaction: a protein + ATP = a phosphoprotein + ADP. This reaction requires the presence of calcium. [GOC:dph, GOC:tb];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0430500-03",5.45390033815118E-3,0.10653247580295101,-0.69201882521242,"OS08G0430500","GF14C",6108.77610345782,7027.72356117085,3628.90133082449,4502.42208594742,"no","OS08G0430500","14-3-3-like protein GF14-C [Source:UniProtKB/Swiss-Prot;Acc:Q6ZKC0]","14-3-3 protein, Florigen receptor, Flowering (Os08t0430500-01);Similar to 14-3-3-like protein S94. (Os08t0430500-02);Similar to 14-3-3-like protein GF14-C. (Os08t0430500-03)",8,20812503,20815627,"GO:0019904;GO:0005515;GO:0005737;GO:0005634","protein domain specific binding;protein binding;cytoplasm;nucleus","Interacting selectively and non-covalently with a specific domain of a protein. [GOC:go_curators];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS11T0147100-01",0.0054575990610111,0.10653247580295101,-0.38477177804577906,"OS11G0147100",null,630.668787604043,682.505313725144,499.001746860566,506.758491414027,"no","OS11G0147100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2RAL5]","Conserved hypothetical protein. (Os11t0147100-01)",11,2145222,2148114,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS12T0454800-01",0.00545638583403173,0.10653247580295101,-0.326889295879564,"OS12G0454800","CHARK",1325.030095254,1310.33742532151,994.243463015159,1106.81291410453,"no","OS12G0454800","Probable kinase CHARK [Source:UniProtKB/Swiss-Prot;Acc:Q2QRN7]","Receptor-like serine/threonine kinase, Cytokinin signaling (Os12t0454800-01)",12,15776462,15779912,"GO:0009736;GO:0000160;GO:0005886;GO:0016310;GO:0016301;GO:0016772;GO:0005622;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","cytokinin-activated signaling pathway;phosphorelay signal transduction system;plasma membrane;phosphorylation;kinase activity;transferase activity, transferring phosphorus-containing groups;intracellular;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0107400-01",0.005464791921818771,0.106547749071734,-7.81053078156187,"OS11G0107400",null,18.0217003138986,58.0138920778836,0,0.338698198406972,"no","OS11G0107400","Major Facilitator Superfamily protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RBL6]","Nodulin-like domain containing protein. (Os11t0107400-01)",11,341400,345820,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0576732-01",0.00547245856269944,0.10662917985178201,-0.481551649006534,"OS12G0576732",null,442.262735849407,458.943782212671,315.024699372646,330.425639762371,"no","OS12G0576732","Os12g0576732 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBY3]","Hypothetical gene. (Os12t0576732-01)",12,23819160,23823117]
["OS01T0190400-02",5.4983508619955105E-3,0.10676439919583999,0.654309359407472,"OS01G0190400","HXK8",177.536683761152,161.328903242272,269.83019822476,263.497587599647,"no","OS01G0190400","Hexokinase-8 [Source:UniProtKB/Swiss-Prot;Acc:Q1WM15]","Similar to Hexokinase. (Os01t0190400-01);Similar to Hexokinase. (Os01t0190400-02)",1,4820155,4823129,"GO:0006096;GO:0005829;GO:0046835;GO:0001678;GO:0005536;GO:0004396;GO:0016310;GO:0016301;GO:0016773;GO:0005975;GO:0005524;GO:0000166;GO:0051156;GO:0019158;GO:0008865;GO:0004340;GO:0016740;GO:0005623","glycolytic process;cytosol;carbohydrate phosphorylation;cellular glucose homeostasis;glucose binding;hexokinase activity;phosphorylation;kinase activity;phosphotransferase activity, alcohol group as acceptor;carbohydrate metabolic process;ATP binding;nucleotide binding;glucose 6-phosphate metabolic process;mannokinase activity;fructokinase activity;glucokinase activity;transferase activity;cell","The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];A cellular homeostatic process involved in the maintenance of an internal steady state of glucose within a cell or between a cell and its external environment. [GOC:dph, GOC:go_curators, GOC:tb];Interacting selectively and non-covalently with the D- or L-enantiomer of glucose. [CHEBI:17234, GOC:jl];Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate. [EC:2.7.1.1];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai];Catalysis of the reaction: ATP + D-mannose = ADP + D-mannose 6-phosphate. [EC:2.7.1.7];Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate. [EC:2.7.1.4];Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose-6-phosphate. [EC:2.7.1.2];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators]"]
["OS01T0296100-03",0.00550192448819203,0.10676439919583999,"Inf","OS01G0296100",null,0,0,26.8747117381818,63.257817276471,"no","OS01G0296100","Os01g0296100 protein [Source:UniProtKB/TrEMBL;Acc:Q94IZ2]","Similar to Shaggy-related protein kinase alpha (EC 2.7.1.-) (ASK-alpha). (Os01t0296100-01);Similar to Glycogen synthase kinase. (Os01t0296100-02);Similar to Glycogen synthase kinase. (Os01t0296100-03)",1,10822587,10827151,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0131100-01",0.005494238807434611,0.10676439919583999,-0.6686031848526971,"OS03G0131100","NLP1",1128.31408880475,1174.46583055133,813.73802566697,634.976517359177,"no","OS03G0131100","Protein NLP1 [Source:UniProtKB/Swiss-Prot;Acc:Q10S83]","Octicosapeptide/Phox/Bem1p domain containing protein. (Os03t0131100-01)",3,1776356,1780897,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0136200-01",5.4955589187788405E-3,0.10676439919583999,-0.279194411897677,"OS03G0136200","SMT2-1",3680.52590304784,3730.29287459949,2918.33385464018,3188.55900409285,"no","OS03G0136200","Methyltransferase [Source:UniProtKB/TrEMBL;Acc:Q10S41]","24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2). (Os03t0136200-01)",3,2003246,2004830,"GO:0032259;GO:0016126;GO:0008202;GO:0006694;GO:0030797;GO:0008757;GO:0005737;GO:0006629;GO:0008168;GO:0008152;GO:0016020;GO:0016021;GO:0016740","methylation;sterol biosynthetic process;steroid metabolic process;steroid biosynthetic process;24-methylenesterol C-methyltransferase activity;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;lipid metabolic process;methyltransferase activity;metabolic process;membrane;integral component of membrane;transferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators];Catalysis of the reaction: 24-methylidenelophenol + S-adenosyl-L-methionine(1+) = (Z)-24-ethylidenelophenol + S-adenosyl-L-homocysteine + H(+). [EC:2.1.1.143, RHEA:21047];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0179000-01",5.4900283233606205E-3,0.10676439919583999,0.38512720964797703,"OS03G0179000",null,644.168477077329,604.216864621938,859.596163804078,770.763803379062,"no","OS03G0179000","Os03g0179000 protein [Source:UniProtKB/TrEMBL;Acc:Q10QY3]","Similar to Tubulin-tyrosine ligase family protein, expressed. (Os03t0179000-01)",3,4150750,4157411,"GO:0006464;GO:0016874;GO:0005524;GO:0003824;GO:0009507","cellular protein modification process;ligase activity;ATP binding;catalytic activity;chloroplast","The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). [GOC:go_curators];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS03T0587000-01",0.005503859934978011,0.10676439919583999,-0.37222261448682903,"OS03G0587000",null,733.862821986831,809.053587040618,606.888551516613,585.155282920226,"no","OS03G0587000","Inositol-phosphate phosphatase [Source:Projected from Arabidopsis thaliana (AT3G02870) UniProtKB/Swiss-Prot;Acc:Q9M8S8]","Similar to L-galactose-1-phosphate phosphatase. (Os03t0587000-01)",3,21681989,21685007,"GO:0006021;GO:0007165;GO:0046855;GO:0008934;GO:0046854;GO:0046872;GO:0016787;GO:0006020;GO:0010347;GO:0009409;GO:0019853;GO:0080167;GO:0005829;GO:0005886;GO:0052832;GO:0052833;GO:0052834","inositol biosynthetic process;signal transduction;inositol phosphate dephosphorylation;inositol monophosphate 1-phosphatase activity;phosphatidylinositol phosphorylation;metal ion binding;hydrolase activity;inositol metabolic process;L-galactose-1-phosphate phosphatase activity;response to cold;L-ascorbic acid biosynthetic process;response to karrikin;cytosol;plasma membrane;inositol monophosphate 3-phosphatase activity;inositol monophosphate 4-phosphatase activity;inositol monophosphate phosphatase activity","The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. [CHEBI:24848, ISBN:0198547684];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];The process of removing a phosphate group from any mono- or polyphosphorylated inositol. [ISBN:0198506732];Catalysis of the reaction: myo-inositol 1-phosphate + H2O = myo-inositol + phosphate. [EC:3.1.3.25];The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways involving inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. [CHEBI:24848, ISBN:0198547684];Catalysis of the reaction: L-galactose-1-phosphate + H2O = L-galactose + phosphate. [PMID:15550539, PMID:16595667];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. [CHEBI:38290, GOC:ma, ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: myo-inositol 3-phosphate + H2O = myo-inositol + phosphate. [EC:3.1.3.25];Catalysis of the reaction: myo-inositol 4-phosphate + H2O = myo-inositol + phosphate. [EC:3.1.3.25];Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate. [EC:3.1.3.25]"]
["OS08T0201700-00",0.005501247208396041,0.10676439919583999,2.0088807669376,"OS08G0201700",null,9.17328527483539,9.2639723706941,32.1982672026499,42.006138840684,"no","OS08G0201700","Os08g0201700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCX6]","Protein kinase-like domain domain containing protein. (Os08t0201700-00)",8,5893697,5894289,"GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0604600-01",0.00551854077743017,0.106981254969573,-0.722382349375785,"OS06G0604600",null,175.311674141299,167.780832935904,107.327557342166,100.619355827685,"no","OS06G0604600","Os06g0604600 protein [Source:UniProtKB/TrEMBL;Acc:Q69X17]","Conserved hypothetical protein. (Os06t0604600-01)",6,23949819,23950657]
["OS01T0158600-01",0.00552503283922466,0.107039190427389,-0.49157620991294104,"OS01G0158600",null,600.340558542005,565.10231461234,378.573565897823,450.344883850124,"no","OS01G0158600","Os01g0158600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JQI5]","Leucine-rich repeat, N-terminal domain containing protein. (Os01t0158600-01)",1,3067950,3071237,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0789400-02",5.5382398261516206E-3,0.10722706157705,-0.26992140676792903,"OS02G0789400","RSZP21",1965.26748659772,2011.4050760566,1656.20246426324,1641.90948453624,"no","OS02G0789400","Serine/arginine-rich splicing factor RSZ21 [Source:UniProtKB/Swiss-Prot;Acc:Q6K4N0]","Similar to 9G8-like SR protein (RSZp22 splicing factor). (Os02t0789400-01);Similar to 9G8-like SR protein (RSZp22 splicing factor). (Os02t0789400-02)",2,33541862,33546534,"GO:0008380;GO:0006397;GO:0046872;GO:0005634;GO:0003676;GO:0008270;GO:0003723;GO:0000398","RNA splicing;mRNA processing;metal ion binding;nucleus;nucleic acid binding;zinc ion binding;RNA binding;mRNA splicing, via spliceosome","The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897]"]
["OS04T0459700-02",0.005548181522980151,0.107283570816512,0.30541135970091604,"OS04G0459700",null,905.097480450425,911.986613381664,1106.44954569106,1139.05018344738,"no","OS04G0459700","NAP1-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X7C9]","Similar to H0219H12.3 protein. (Os04t0459700-01);Nucleosome assembly protein (NAP) family protein. (Os04t0459700-02)",4,22943177,22946878,"GO:0006334;GO:0005737;GO:0005634","nucleosome assembly;cytoplasm;nucleus","The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS04T0486900-01",0.005545681818589661,0.107283570816512,-0.509855081761977,"OS04G0486900",null,422.990376561854,381.881527725279,298.565750424572,266.690137290854,"no","OS04G0486900","OJ991113_30.3 protein [Source:UniProtKB/TrEMBL;Acc:Q7FAB1]","Acid phosphatase/vanadium-dependent haloperoxidase related family protein. (Os04t0486900-01)",4,24321375,24325557,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0151600-01",0.00555867941514857,0.10740966559048701,0.420972666235555,"OS01G0151600",null,418.913360884149,453.934646164011,609.815666716854,558.779335276076,"no","OS01G0151600","Os01g0151600 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZEJ4]","Conserved hypothetical protein. (Os01t0151600-01)",1,2791418,2795857,"GO:0005634;GO:0005783","nucleus;endoplasmic reticulum","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732]"]
["OS01T0939600-01",0.00557290747345307,0.10740966559048701,-0.737414437844181,"OS01G0939600",null,316.987968941534,402.468132993488,201.970948816622,229.568433199087,"no","OS01G0939600","Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q8S0G4]","Similar to Glycerol-3-phosphate dehydrogenase-like protein (Fragment). (Os01t0939600-01)",1,41245588,41249894,"GO:0005829;GO:0046168;GO:0004367;GO:0051287;GO:0009331;GO:0006072;GO:0005737;GO:0016616;GO:0055114;GO:0016491;GO:0005975","cytosol;glycerol-3-phosphate catabolic process;glycerol-3-phosphate dehydrogenase [NAD+] activity;NAD binding;glycerol-3-phosphate dehydrogenase complex;glycerol-3-phosphate metabolic process;cytoplasm;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:ai];Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+. [EC:1.1.1.8, EC:1.1.1.94];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate. [EC:1.1.5.3];The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:go_curators, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS03T0305150-00",5.57579633498666E-3,0.10740966559048701,26.2706455372957,"OS03G0305150",null,1.7818734441664298E-6,0,84.6933128546138,59.5611199949504,"no","OS03G0305150","Os03g0305150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWH3]","Hypothetical protein. (Os03t0305150-00)",3,10824322,10826017]
["OS06T0133800-01",5.5725755908940106E-3,0.10740966559048701,0.45246556480745803,"OS06G0133800",null,4779.5184420786,4799.19847756725,6010.80822804419,7096.48591850208,"no","OS06G0133800","Os06g0133800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DEU8]","Similar to Transferase. (Os06t0133800-01);Similar to Transketolase, chloroplastic. (Os06t0133800-02)",6,1808969,1812083,"GO:0008152;GO:0003824;GO:0004802","metabolic process;catalytic activity;transketolase activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor. [EC:2.2.1.1, GOC:fmc]"]
["OS07T0404300-01",0.0055728623434394,0.10740966559048701,0.3742218122652,"OS07G0404300",null,634.995191802494,586.71825014396,824.470781401187,759.041159981662,"no","OS07G0404300","ARP protein-like [Source:UniProtKB/TrEMBL;Acc:Q6Z647]","Zinc finger, RanBP2-type domain containing protein. (Os07t0404300-01)",7,12313548,12325679,"GO:0046872;GO:0009793;GO:0005634;GO:0005739;GO:0048046","metal ion binding;embryo development ending in seed dormancy;nucleus;mitochondrion;apoplast","Interacting selectively and non-covalently with any metal ion. [GOC:ai];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS07T0599600-02",0.005564180118500341,0.10740966559048701,-1.79022066421581,"OS07G0599600",null,800.114326749531,1154.24995916521,204.235043120948,360.826041746798,"no","OS07G0599600","Early nodulin 75-like protein [Source:UniProtKB/TrEMBL;Acc:Q8H5A3]","Hypothetical protein. (Os07t0599600-02)",7,24472509,24473579,"GO:0007275","multicellular organism development","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS05T0103600-01",0.005581670675956491,0.10745507403391501,0.322378793525662,"OS05G0103600",null,1210.87365627827,1086.97275816144,1463.55760012045,1409.64786853737,"no","OS05G0103600","Os05g0103600 protein [Source:UniProtKB/TrEMBL;Acc:Q75M28]","Similar to Ankyrin-like protein. (Os05t0103600-01)",5,197718,201616]
["OS02T0125400-01",0.005591222287767611,0.10757117338531201,-0.656245771492666,"OS02G0125400",null,206.908545643509,234.687300057584,133.671594144334,146.533042467502,"no","OS02G0125400","Os02g0125400 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z2N6]","Negative regulatory factor PREG domain containing protein. (Os02t0125400-01)",2,1331347,1333420,"GO:0000079;GO:0019901","regulation of cyclin-dependent protein serine/threonine kinase activity;protein kinase binding","Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. [GOC:go_curators, GOC:pr];Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. [GOC:jl]"]
["OS01T0924933-01",0.00560689687524225,0.10767438809321901,-1.00984709717514,"OS01G0924933",null,86.0240172711761,96.7975554795179,45.8521879462083,44.9367996900341,"no","OS01G0924933","Os01g0924933 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCC3]","Transferase family protein. (Os01t0924933-01);BAHD/HXXXD acyltransferase (class V), Polymerized protective layer synthesis of anther cuticle and pollen wall (Os01t0924933-02)",1,40508920,40511048,"GO:0016747;GO:0016740","transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0212100-01",0.00560865944148866,0.10767438809321901,0.8886350069663861,"OS06G0212100",null,86.0841287019824,67.8560342290972,129.834849272096,155.173599355784,"no","OS06G0212100","Os06g0212100 protein [Source:UniProtKB/TrEMBL;Acc:Q69TV8]","Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1,2)-fucosyltransferase) (PsFT1). (Os06t0212100-01)",6,5712154,5714608,"GO:0009832;GO:0008417;GO:0005794;GO:0009969;GO:0042546;GO:0036065;GO:0008107;GO:0016757;GO:0016020;GO:0016021;GO:0016740","plant-type cell wall biogenesis;fucosyltransferase activity;Golgi apparatus;xyloglucan biosynthetic process;cell wall biogenesis;fucosylation;galactoside 2-alpha-L-fucosyltransferase activity;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;transferase activity","A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu];Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [GOC:ai];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:sm];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:0198506732];The covalent attachment of a fucosyl group to an acceptor molecule. [CHEBI:62688, GOC:sart, PMID:19948734];Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R. [EC:2.4.1.69];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0367500-01",0.005610684270895691,0.10767438809321901,-0.5816575023059141,"OS06G0367500",null,260.929003373095,256.303235589204,169.772681613972,175.839650961003,"no","OS06G0367500","Os06g0367500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WWH9]","Similar to B-cell receptor-associated protein 31-like containing protein. (Os06t0367500-01)",6,15379505,15384233,"GO:0005789;GO:0070973;GO:0006888;GO:0005783;GO:0006886;GO:0016021","endoplasmic reticulum membrane;protein localization to endoplasmic reticulum exit site;ER to Golgi vesicle-mediated transport;endoplasmic reticulum;intracellular protein transport;integral component of membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];A process in which a protein is transported to, or maintained in, a location at an endoplasmic reticulum exit site. [GOC:mah];The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:0716731363];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0665950-01",0.00560370428455672,0.10767438809321901,-1.10115981393853,"OS11G0665950",null,81.2658889998569,72.8837336474756,37.6645090708582,34.1910432424172,"no","OS11G0665950","Os11g0665950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y533]","Similar to Protein kinase domain containing protein. (Os11t0665950-01)",11,26873372,26873913,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0641000-01",0.00561859262553027,0.107758469488513,0.41451888117803504,"OS01G0641000",null,398.528282495626,375.705546144816,519.075095509386,512.865648636258,"no","OS01G0641000","Os01g0641000 protein [Source:UniProtKB/TrEMBL;Acc:Q8LQ53]","Similar to Protein kinase. (Os01t0641000-01)",1,25757795,25762187,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS07T0193600-01",5.6271079656983304E-3,0.10785407940277,0.294810594445861,"OS07G0193600",null,1106.05789224545,1099.86867633962,1360.95784944317,1345.10502718689,"no","OS07G0193600","Os07g0193600 protein [Source:UniProtKB/TrEMBL;Acc:Q0D802]","Similar to Aminoacyl-tRNA synthetase. (Os07t0193600-01);Non-protein coding transcript. (Os07t0193600-02)",7,5071071,5076929,"GO:0004812","aminoacyl-tRNA ligase activity","Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732]"]
["OS02T0165100-01",5.6505257716876305E-3,0.108035551125417,-0.546755335516526,"OS02G0165100",null,400.834559441527,479.806236898408,292.943868311445,309.905825022362,"no","OS02G0165100","Os02g0165100 protein [Source:UniProtKB/TrEMBL;Acc:Q6H6V1]","Protein kinase, core domain containing protein. (Os02t0165100-01)",2,3504423,3508658,"GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672","protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS06T0233800-01",5.65415975113459E-3,0.108035551125417,0.8339978652109691,"OS06G0233800",null,83.7922937117812,106.759089494789,155.861228195366,183.819164890776,"no","OS06G0233800","Os06g0233800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DDC5]","Conserved hypothetical protein. (Os06t0233800-01)",6,6953695,6956081,"GO:0005829;GO:0006468;GO:0035556;GO:0004674","cytosol;protein phosphorylation;intracellular signal transduction;protein serine/threonine kinase activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf]"]
["OS09T0511200-00",0.005651454498713151,0.108035551125417,1.36309479531394,"OS09G0511200",null,35.097966800893,30.253221918049,65.2186164006764,102.88842776483,"no","OS09G0511200","Os09g0511200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XNZ0]","Conserved hypothetical protein. (Os09t0511200-00)",9,19868099,19868847]
["OS10T0341700-02",0.005654256554384071,0.108035551125417,0.556965011259371,"OS10G0341700","CSLH1",448.935419932322,468.117229928469,607.146409692198,741.994914847663,"no","OS10G0341700","Cellulose synthase-like protein H1 [Source:UniProtKB/Swiss-Prot;Acc:Q339N5]","Cellulose synthase-like H1. (Os10t0341700-01);Cellulose synthase-like H1. (Os10t0341700-02);Similar to cDNA clone:J023010H01, full insert sequence. (Os10t0341700-03);Similar to cDNA clone:J023010H01, full insert sequence. (Os10t0341700-04)",10,10089510,10095035,"GO:0030244;GO:0016760;GO:0016020;GO:0016021;GO:0016757;GO:0016740;GO:0009833;GO:0016759;GO:0005794;GO:0005886;GO:0000139;GO:0071555","cellulose biosynthetic process;cellulose synthase (UDP-forming) activity;membrane;integral component of membrane;transferase activity, transferring glycosyl groups;transferase activity;plant-type primary cell wall biogenesis;cellulose synthase activity;Golgi apparatus;plasma membrane;Golgi membrane;cell wall organization","The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];Catalysis of the reaction: nucleoside-disphosphate-glucose + ((1,4)-beta-D-glucosyl)(n) = nucleoside-disphosphate + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12, EC:2.4.1.29];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS11T0208850-00",0.005651914902954811,0.108035551125417,-0.7815355265774071,"OS11G0208850",null,220.769070022658,250.148212156014,128.416195043133,145.53865450455,"no","OS11G0208850","Os11g0208850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y0J5]","Hypothetical protein. (Os11t0208850-00)",11,5586618,5589099]
["OS01T0649900-01",0.00568051810580698,0.108206976216438,-0.437704808758884,"OS01G0649900",null,902.94948761201,854.217134435701,598.475620857362,698.854998729658,"no","OS01G0649900","Lipase-like [Source:UniProtKB/TrEMBL;Acc:Q8RZ61]","Lipase, GDSL domain containing protein. (Os01t0649900-01)",1,26222617,26225117,"GO:0016788","hydrolase activity, acting on ester bonds","Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS01T0659900-01",0.00569052913898419,0.108206976216438,0.324978576917735,"OS01G0659900",null,720.612521034291,752.440422553043,910.33282727492,934.880810942665,"no","OS01G0659900","Fimbriata-like [Source:UniProtKB/TrEMBL;Acc:Q5SMS6]","Cyclin-like F-box domain containing protein. (Os01t0659900-01)",1,26872217,26875031]
["OS01T0714600-01",5.7128126681433205E-3,0.108206976216438,0.7804184928854021,"OS01G0714600",null,92.75210666778,77.1997697557842,144.404349878551,147.509929417286,"no","OS01G0714600","Os01g0714600 protein [Source:UniProtKB/TrEMBL;Acc:Q5JLT2]","Similar to cDNA clone:J023088C01, full insert sequence. (Os01t0714600-01)",1,29708354,29709366,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0687550-00",0.00569094945157861,0.108206976216438,1.76060598072516,"OS02G0687550",null,9.17328527483539,16.4692842145673,45.8581381371074,41.0292518909007,"no","OS02G0687550","Os02g0687550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VND2]","Hypothetical gene. (Os02t0687550-00)",2,28174101,28175352]
["OS02T0713700-01",0.00571093448563301,0.108206976216438,0.38401571798730305,"OS02G0713700",null,1358.66547459506,1292.83881084353,1614.79188546623,1845.33944814075,"no","OS02G0713700","DNA-binding protein-like [Source:UniProtKB/TrEMBL;Acc:Q6ZFU2]","Protein of unknown function DUF296 domain containing protein. (Os02t0713700-01)",2,29571841,29573542,"GO:0003680;GO:0005634;GO:0003700;GO:0006355;GO:0003677","AT DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated;DNA binding","Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). [GOC:jl, PMID:2670564];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS02T0759800-02",5.6780470709337704E-3,0.108206976216438,0.289164798356836,"OS02G0759800",null,1611.31907204272,1653.21073270572,2066.70011611538,1922.33551912109,"no","OS02G0759800","Os02g0759800 protein [Source:UniProtKB/TrEMBL;Acc:Q6K8D9]","Similar to GAMYB-binding protein (Fragment). (Os02t0759800-01);Similar to pre-mRNA-splicing factor prp45. (Os02t0759800-02)",2,31995344,31997696,"GO:0000398;GO:0005681;GO:0071013;GO:0003712;GO:0006357;GO:0071014;GO:0000350;GO:0071141","mRNA splicing, via spliceosome;spliceosomal complex;catalytic step 2 spliceosome;transcription cofactor activity;regulation of transcription from RNA polymerase II promoter;post-mRNA release spliceosomal complex;generation of catalytic spliceosome for second transesterification step;SMAD protein complex","The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. [GOC:editors, GOC:mah, ISBN:0198547684, PMID:19239890];A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:19239890];Conformational rearrangement of the spliceosomal complex containing the RNA products from the 1st step of splicing to form the catalytic site for the second step of splicing. [GOC:krc, ISBN:0879695897];A protein complex that consists of only SMAD proteins; may be homomeric or heteromeric. [GOC:mah, PMID:9670020]"]
["OS03T0259100-01",0.005694224231621431,0.108206976216438,0.600473070414281,"OS03G0259100",null,1319.93382565687,1199.16975687318,1719.19232760816,2100.3069420342,"no","OS03G0259100","Chemocyanin, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NT8]","Similar to Basic blue protein (Cusacyanin) (Plantacyanin) (CBP). (Os03t0259100-01)",3,8396569,8397410,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS04T0135400-00",5.70888882539355E-3,0.108206976216438,-1.63751405509896,"OS04G0135400",null,553.454878248402,840.962825206343,174.651206947707,273.528345939338,"no","OS04G0135400","Os04g0135400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W6M3]","Similar to OSIGBa0140L04.2 protein. (Os04t0135400-00)",4,2300969,2302931,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS04T0431100-01",0.00568198932853956,0.108206976216438,0.38963515651391906,"OS04G0431100",null,574.864281471373,627.579076869094,755.098636580884,820.176786555417,"no","OS04G0431100","GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:Q7XQP9]","GrpE protein homolog. (Os04t0431100-01);Similar to GrpE protein homolog. (Os04t0431100-02)",4,21377338,21379536,"GO:0051087;GO:0042803;GO:0000774;GO:0006457;GO:0050790;GO:0051082;GO:0009507;GO:0005759;GO:0005739;GO:0005507;GO:0009570","chaperone binding;protein homodimerization activity;adenyl-nucleotide exchange factor activity;protein folding;regulation of catalytic activity;unfolded protein binding;chloroplast;mitochondrial matrix;mitochondrion;copper ion binding;chloroplast stroma","Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. [GOC:kd];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Any process that modulates the activity of an enzyme. [GOC:ai, GOC:ebc, GOC:vw];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS06T0326700-01",5.6911181454605995E-3,0.108206976216438,0.36514749694207205,"OS06G0326700",null,556.51264000668,603.187534358527,765.928477396369,727.780777588595,"no","OS06G0326700","Os06g0326700 protein [Source:UniProtKB/TrEMBL;Acc:Q69PT1]","Diacylglycerol acyltransferase family protein. (Os06t0326700-01)",6,12809778,12812419,"GO:0016746;GO:0016747;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0551300-01",0.00570783041712173,0.108206976216438,-0.39103182923505503,"OS07G0551300",null,2136.35621511722,2408.63281638047,1661.62572867008,1804.31019624985,"no","OS07G0551300","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q7EZ32]","Similar to KI domain interacting kinase 1. (Os07t0551300-01)",7,21876891,21883372,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0623600-01",5.67029245249935E-3,0.108206976216438,-0.37506586315601503,"OS07G0623600",null,1950.08824341218,2239.79592501334,1612.97620815818,1617.71865888732,"no","OS07G0623600","Os07g0623600 protein [Source:UniProtKB/TrEMBL;Acc:Q7XI42]","Similar to mRNA, clone: RTFL01-43-H20. (Os07t0623600-01)",7,25804444,25807753]
["OS11T0307300-01",0.0057082687900389,0.108206976216438,-0.911458538163585,"OS11G0307300",null,2921.18173307536,2200.70810317155,1237.19402463515,1485.84505062047,"no","OS11G0307300","O-methyltransferase [Source:UniProtKB/TrEMBL;Acc:Q53LW0]","Herbicide safener binding protein. (Os11t0307300-01)",11,11650220,11651887,"GO:0019438;GO:0008757;GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740","aromatic compound biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity","The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0704525-00",0.005697289698067521,0.108206976216438,0.899781274739171,"OS11G0704525",null,82.9084089888302,70.9319049191216,152.472973267512,134.559683366542,"no","OS11G0704525","Os11g0704525 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5R4]","Conserved hypothetical protein. (Os11t0704525-00)",11,28827956,28828266]
["OS12T0137100-01",5.7221854687397305E-3,0.108317354672203,0.44461599394266305,"OS12G0137100",null,2372.51289549261,2365.0947855205,2959.57860589664,3488.07719022624,"no","OS12G0137100","EF hand family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QY10]","EF-Hand type domain containing protein. (Os12t0137100-01)",12,1794439,1797343,"GO:0006508;GO:0005737;GO:0005509;GO:0004198","proteolysis;cytoplasm;calcium ion binding;calcium-dependent cysteine-type endopeptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium. [GOC:mah]"]
["OS01T0901600-01",0.005733003870503231,0.108454943809049,1.18681543969444,"OS01G0901600","4CLL6",36.7199079610818,32.8041223892005,82.4696670272894,75.8015664973562,"no","OS01G0901600","4-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RU95]","Similar to 4-coumarate--CoA ligase-like 6. (Os01t0901600-01)",1,39257838,39261362,"GO:0016874;GO:0005524;GO:0000166;GO:0008152;GO:0003824","ligase activity;ATP binding;nucleotide binding;metabolic process;catalytic activity","Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS09T0501200-01",0.00574042078868391,0.10852805441576201,-0.347671807138693,"OS09G0501200",null,2501.00084296742,2801.45922425931,2040.21465912045,2126.73030007539,"no","OS09G0501200","Os09g0501100 protein [Source:UniProtKB/TrEMBL;Acc:B7E905]","Similar to Ribosomal L32. (Os09t0501200-01)",9,19398925,19401028,"GO:0022625;GO:0005840;GO:0005622;GO:0006412;GO:0003735","cytosolic large ribosomal subunit;ribosome;intracellular;translation;structural constituent of ribosome","The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah]"]
["OS05T0464150-00",5.7452317112806905E-3,0.10855183626657201,1.10991969843872,"OS05G0464150",null,34.1808742908935,36.9733497031008,77.0543569572789,76.5203900731775,"no","OS05G0464150","Os05g0464150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNC0]","Hypothetical protein. (Os05t0464150-00)",5,22789296,22797537]
["OS02T0216300-07",5.7545110726292805E-3,0.108597468153036,-0.35650999825844204,"OS02G0216300",null,26438.5128215022,24995.1857547825,20099.7210072861,20072.6580695131,"no","OS02G0216300","Os02g0216300 protein [Source:UniProtKB/TrEMBL;Acc:B7EQF1]","Similar to cDNA clone:J023088C01, full insert sequence. (Os02t0216300-01);Similar to cDNA clone:J023088C01, full insert sequence. (Os02t0216300-04);Similar to cDNA clone:J023088C01, full insert sequence. (Os02t0216300-05);Similar to cDNA clone:J023088C01, full insert sequence. (Os02t0216300-07);Similar to cDNA clone:001-032-A03, full insert sequence. (Os02t0216300-09)",2,6508874,6524586,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0714200-01",0.00575475585689202,0.108597468153036,-0.271911484541422,"OS06G0714200",null,2559.34659167907,2493.03789798012,2017.75807803273,2166.73525461947,"no","OS06G0714200","Os06g0714200 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z7T2]","Similar to calcium dependent protein kinase1. (Os06t0714200-01)",6,30301723,30308397,"GO:0046777;GO:0009738;GO:0009931;GO:0005516;GO:0004683;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","protein autophosphorylation;abscisic acid-activated signaling pathway;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS02T0664000-01",0.00575991925700574,0.108627810580271,0.256112436396017,"OS02G0664000",null,2551.04688574267,2673.17069407695,3140.05545955445,3098.99907712068,"no","OS02G0664000","Glutathione peroxidase [Source:UniProtKB/TrEMBL;Acc:Q6ESJ0]","Similar to Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor (EC 1.11.1.12) (PHGPx). (Os02t0664000-01)",2,26929770,26932403,"GO:0004602;GO:0004601;GO:0055114;GO:0016491;GO:0098869;GO:0006979;GO:0048831;GO:2000280","glutathione peroxidase activity;peroxidase activity;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification;response to oxidative stress;regulation of shoot system development;regulation of root development","Catalysis of the reaction: 2 glutathione + hydrogen peroxide = oxidized glutathione + 2 H2O. [EC:1.11.1.9];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Any process that modulates the frequency, rate or extent of shoot development. [GOC:tb, PMID:16361392];Any process that modulates the frequency, rate or extent of root development. [GOC:obol]"]
["OS04T0485300-04",0.00577253138721308,0.108629288010571,0.395692746655041,"OS04G0485300",null,2316.06116539752,2553.56816678526,3025.17785417045,3381.18141869908,"no","OS04G0485300","Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q7X7I6]","Glucose-6-phosphate dehydrogenase. (Os04t0485300-01);Glucose-6-phosphate dehydrogenase. (Os04t0485300-02);Similar to Glucose-6-phosphate 1-dehydrogenase. (Os04t0485300-03);Similar to Glucose-6-phosphate 1-dehydrogenase. (Os04t0485300-04)",4,24261434,24267801,"GO:0006006;GO:0050661;GO:0004345;GO:0055114;GO:0006098;GO:0005975;GO:0016491","glucose metabolic process;NADP binding;glucose-6-phosphate dehydrogenase activity;oxidation-reduction process;pentose-phosphate shunt;carbohydrate metabolic process;oxidoreductase activity","The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Catalysis of the reaction: D-glucose 6-phosphate + NADP+ = D-glucono-1,5-lactone 6-phosphate + NADPH + H+. [EC:1.1.1.49];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS07T0418700-01",0.00577095514547389,0.108629288010571,1.87524424100932,"OS07G0418700",null,49.0070127435457,45.0920159912894,228.077968730825,117.137228763752,"no","OS07G0418700",null,"Proline-rich glycoprotein, ABA-dependent inhibition of root growth (Os07t0418700-01)",7,13366416,13367503]
["OS09T0474000-01",0.00577327209293211,0.108629288010571,0.40044599607040504,"OS09G0474000",null,486.184119566276,459.081297481063,652.746689653721,594.92415241806,"no","OS09G0474000","Os09g0474000 protein [Source:UniProtKB/TrEMBL;Acc:Q69JJ9]","bZIP transcription factor, bZIP-1 domain containing protein. (Os09t0474000-01)",9,18122627,18123463,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS11T0691300-00",0.00577421981307827,0.108629288010571,-0.734067388637055,"OS11G0691300",null,608.147742576325,623.705234893873,318.956114763049,421.641953198495,"no","OS11G0691300","Os11g0691300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5G7]","Similar to Protein kinase. (Os11t0691300-00)",11,28163572,28165364,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0139400-01",0.00577918366130399,0.10865576567394401,-0.7315143124136071,"OS11G0139400",null,234.436878776132,193.169317628439,136.885683541081,120.649304556617,"no","OS11G0139400","Os11g0139400 protein [Source:UniProtKB/TrEMBL;Acc:Q2RAS8]","Protein of unknown function DUF250 domain containing protein. (Os11t0139400-01)",11,1818916,1820504,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0581400-01",0.00578962910523521,0.10878520813231601,-0.7343744383873321,"OS04G0581400",null,206.351243834068,170.034341578325,113.562805426166,112.674515206172,"no","OS04G0581400","Os04g0581400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDY0]","B3 DNA binding domain containing protein, Brassinosteroid homeostasis (Os04t0581400-01)",4,29366459,29367911,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0649900-00",5.7985151969564405E-3,0.10888520977099801,3.66952740689634,"OS02G0649900","YSL2",4.07701567770462,7.20531184387319,34.1496773361438,109.411338375735,"no","OS02G0649900","Metal-nicotianamine transporter YSL2 [Source:UniProtKB/Swiss-Prot;Acc:Q6H3Z6]","Metal-nicotianamine (NA) transporter, Fe and Mn transport to the endosperm (Os02t0649900-01)",2,26171617,26174918,"GO:0055072;GO:0048316;GO:0005886;GO:0006810;GO:0055085;GO:0006811;GO:0016020;GO:0016021;GO:0051980;GO:0010039;GO:0015688","iron ion homeostasis;seed development;plasma membrane;transport;transmembrane transport;ion transport;membrane;integral component of membrane;iron-nicotianamine transmembrane transporter activity;response to iron ion;iron chelate transport","Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm];The directed movement of iron chelates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. [GOC:ai]"]
["OS11T0160500-01",0.005803551766641071,0.10891284617593201,-0.30129426825120903,"OS11G0160500",null,1396.37786961383,1374.15590165296,1168.89466996287,1079.4600795106,"no","OS11G0160500","Os11g0160500 protein [Source:UniProtKB/TrEMBL;Acc:B7EPB8]","Similar to BZIP transcriptional activator RSG-related. (Os11t0160500-01)",11,2939274,2942815,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0231700-01",5.81011977252191E-3,0.10896587135612801,-0.39789904492126704,"OS01G0231700",null,1249.30731047128,1139.46860159537,853.068042040514,959.923855949678,"no","OS01G0231700","Os01g0231700 protein [Source:UniProtKB/TrEMBL;Acc:Q5NB69]","Similar to 60S acidic ribosomal protein P2-B (CaRP2B). (Os01t0231700-01)",1,7278745,7280241,"GO:0006414;GO:0030529;GO:0005840;GO:0005622;GO:0003735","translational elongation;intracellular ribonucleoprotein complex;ribosome;intracellular;structural constituent of ribosome","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah]"]
["OS01T0846700-00",0.005817076989455491,0.10896587135612801,0.47779067971228206,"OS01G0846700",null,331.938803432434,304.01584995012,459.770083621306,425.86635268815,"no","OS01G0846700","Os01g0846700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAA1]","Hypothetical protein. (Os01t0846700-00)",1,36379625,36385146]
["OS05T0494000-01",0.0058137423837576,0.10896587135612801,-0.31160129084104304,"OS05G0494000",null,4379.19871306855,4252.26504452893,3279.36738279529,3675.40812616663,"no","OS05G0494000","Os05g0494000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DH37]","Similar to Cytochrome P450 98A1 (EC 1.14.-.-). (Os05t0494000-01)",5,24271090,24275144,"GO:0009809;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","lignin biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers. [GOC:tair_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0627100-01",0.00582864220518281,0.10911561069408401,-0.818702608317284,"OS06G0627100",null,205.468405957479,184.634577440286,96.0569418161522,125.112554581974,"no","OS06G0627100","Os06g0627100 protein [Source:UniProtKB/TrEMBL;Acc:C7J3Z3]","Conserved hypothetical protein. (Os06t0627100-01)",6,25315693,25316400]
["OS08T0416800-01",5.8335867396357806E-3,0.10914129949133601,-1.29649791638036,"OS08G0416800",null,2309.62938141967,1686.04297146633,662.503740321191,964.187419436165,"no","OS08G0416800","Os08g0416800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPV1]","Conserved hypothetical protein. (Os08t0416800-01)",8,19928662,19929233]
["OS04T0624000-01",5.8486526252896805E-3,0.109289318047615,-0.26744505094110504,"OS04G0624000","ATG8B",2457.42119973646,2630.96815327713,2096.79018843923,2130.59043747748,"no","OS04G0624000","Autophagy-related protein 8B [Source:UniProtKB/Swiss-Prot;Acc:Q7XPR1]","Similar to Symbiosis-related like protein. (Os04t0624000-01)",4,31716399,31719152,"GO:0005774;GO:0005773;GO:0006914;GO:0031410;GO:0005856;GO:0005874;GO:0015031;GO:0005737;GO:0006810;GO:0006995;GO:0016020;GO:0000421","vacuolar membrane;vacuole;autophagy;cytoplasmic vesicle;cytoskeleton;microtubule;protein transport;cytoplasm;transport;cellular response to nitrogen starvation;membrane;autophagosome membrane","The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. [GOC:autophagy, ISBN:0198547684, PMID:11099404, PMID:9412464];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered. [GOC:autophagy, GOC:isa_complete]"]
["OS05T0306000-01",0.005846279427671431,0.109289318047615,-0.297065484311599,"OS05G0306000",null,2443.49238415446,2646.40810722828,1999.21968176454,2143.48209328014,"no","OS05G0306000","Os05g0306000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DJA7]","GOLD domain containing protein. (Os05t0306000-01)",5,13840559,13848909,"GO:0006810;GO:0016021","transport;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0662700-02",0.00586033764951708,0.109438564688296,-0.39026743938602504,"OS02G0662700",null,621.313542011807,643.577594139701,479.562130992766,485.534820157179,"no","OS02G0662700","Os02g0662700 protein [Source:UniProtKB/TrEMBL;Acc:Q6H6L3]","Similar to Scl1 protein (Fragment). (Os02t0662700-01);Similar to Scl1 protein (Fragment). (Os02t0662700-02)",2,26841588,26844331,"GO:0006355;GO:0006351;GO:0030154;GO:0043565;GO:0005634;GO:0003700","regulation of transcription, DNA-templated;transcription, DNA-templated;cell differentiation;sequence-specific DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH]"]
["OS03T0246500-02",5.86737080489116E-3,0.109438564688296,-0.481913975487527,"OS03G0246500",null,1529.763135456,1812.8578071746,1161.80948565204,1231.59757509328,"no","OS03G0246500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P54]","Protein of unknown function DUF869, plant family protein. (Os03t0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non-protein coding transcript. (Os03t0246500-03)",3,7740991,7749358]
["OS03T0293900-01",5.8673857344667705E-3,0.109438564688296,0.39590286122163204,"OS03G0293900",null,544.281592973566,498.195847490661,718.118929125768,653.53736940506,"no","OS03G0293900","Os03g0293900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VX40]","Similar to Rubisco large subunit-binding protein subunit alpha (Fragment). (Os03t0293900-01)",3,10241251,10246038,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0777800-01",5.8736541001854995E-3,0.10948863945629501,-0.655211159471995,"OS02G0777800",null,332.77756109588597,279.977831647644,177.47219302392,211.616786032868,"no","OS02G0777800","Os02g0777800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQA6]","Protein kinase, catalytic domain domain containing protein. (Os02t0777800-01)",2,32915472,32918514,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS05T0142400-01",0.005882134462033861,0.109513084755673,0.5530104901978681,"OS05G0142400",null,206.908545643509,199.690071101628,280.027354156379,316.511371729805,"no","OS05G0142400","Os05g0142400 protein [Source:UniProtKB/TrEMBL;Acc:Q75KL6]","Conserved hypothetical protein. (Os05t0142400-01)",5,2464329,2465034]
["OS06T0215750-00",0.00588091705285987,0.109513084755673,"Inf","OS06G0215750",null,0,0,52.7481093063237,41.8522112880443,"no","OS06G0215750","Os06g0215750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WUH6]","Hypothetical gene. (Os06t0215750-00)",6,5884818,5886026]
["OS01T0343300-01",0.00590321188455367,0.10977171606627101,0.40219116882014505,"OS01G0343300",null,1628.76776324299,1890.11687099444,2284.12556125465,2366.12800661853,"no","OS01G0343300","Os01g0343300 protein [Source:UniProtKB/TrEMBL;Acc:Q8LQW5]","Zinc finger, NHR/GATA-type domain containing protein. (Os01t0343300-01)",1,13570702,13573119,"GO:0005667;GO:0001085;GO:0045944;GO:0001228;GO:0003682;GO:0006366;GO:0030154;GO:0005634;GO:0000977;GO:0003700;GO:0043565;GO:0006355;GO:0008270","transcription factor complex;RNA polymerase II transcription factor binding;positive regulation of transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;chromatin binding;transcription from RNA polymerase II promoter;cell differentiation;nucleus;RNA polymerase II regulatory region sequence-specific DNA binding;transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;zinc ion binding","A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. [GOC:jl];Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II. [GOC:txnOH];Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS05T0424000-01",0.00590156953974944,0.10977171606627101,-0.54137027716228,"OS05G0424000",null,385.244491208425,447.632106904721,268.709067406381,303.575411457467,"no","OS05G0424000","Os05g0424000 protein [Source:UniProtKB/TrEMBL;Acc:Q60EP1]","Amino acid permease, Transport of amino acids (Os05t0424000-01)",5,20779075,20781283,"GO:0003333;GO:0015171;GO:0005886;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;plasma membrane;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0109800-04",0.00592132760320765,0.11004160640705601,0.344106844937972,"OS09G0109800",null,622.635476530623,618.817571074555,795.617855423984,780.239056748943,"no","OS09G0109800","Os09g0109800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJN2]","Similar to Na+/H+ antiporter, probable CP0838. (Os09t0109800-01);Similar to Na+/H+ antiporter, probable CP0838. (Os09t0109800-02);Divalent ion symporter domain containing protein. (Os09t0109800-03);Similar to Na+/H+ antiporter, probable CP0838. (Os09t0109800-04)",9,878145,890186,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0283200-00",5.94026443353079E-3,0.11031636075595701,0.5939560349627311,"OS03G0283200",null,157.984357511054,171.898153989546,242.950561619995,254.967493893454,"no","OS03G0283200","Protein IN2-1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q10N44]","Similar to IN2-1 protein. (Os03t0283200-00)",3,9717253,9719884,"GO:0005737;GO:0004364;GO:0006749;GO:0010731","cytoplasm;glutathione transferase activity;glutathione metabolic process;protein glutathionylation","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. [GOC:BHF, GOC:dph, GOC:rl, GOC:tb]"]
["OS07T0282401-00",5.9433336542388405E-3,0.11031636075595701,-0.9615393464030181,"OS07G0282401",null,126.969150586293,172.374470721346,69.6660925150487,84.04946442855,"no","OS07G0282401","Os07g0282401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X5J2]","Similar to Aldehyde oxidase. (Os07t0282401-00)",7,10762643,10763602,"GO:0051537;GO:0051536;GO:0016614;GO:0050660;GO:0046872;GO:0005506;GO:0016491;GO:0055114;GO:0003824","2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;metal ion binding;iron ion binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0565900-02",0.0059493843452684,0.11036162144301201,-1.1108173636066,"OS01G0565900",null,267.537821788524,368.375691397915,127.61890443989,166.829162633472,"no","OS01G0565900","Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q0JLV5]","Similar to Protein transport protein Sec61 beta subunit. (Os01t0565900-01);Non-protein coding transcript. (Os01t0565900-02)",1,21631182,21633086,"GO:0031205;GO:0005784;GO:0031204;GO:0006616;GO:0005086;GO:0015450;GO:0015031;GO:0005783;GO:0043547;GO:0006886;GO:0006810;GO:0016020;GO:0016021","endoplasmic reticulum Sec complex;Sec61 translocon complex;posttranslational protein targeting to membrane, translocation;SRP-dependent cotranslational protein targeting to membrane, translocation;ARF guanyl-nucleotide exchange factor activity;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;protein transport;endoplasmic reticulum;positive regulation of GTPase activity;intracellular protein transport;transport;membrane;integral component of membrane","An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex. [GOC:mtg_sensu, PMID:12158317, PMID:14617809];A translocon complex that contains a core heterotrimer of conserved alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Sec61p, Sbh1p, and Sss1p. The Sec61 translocon complex functions in cotranslational and posttranslational translocation events. [GOC:mah, PMID:18166647];The process in which a protein translocates through the ER membrane posttranslationally. [PMID:12518317, PMID:8707814];The process during cotranslational membrane targeting wherein proteins move across a membrane. SRP and its receptor initiate the transfer of the nascent chain across the endoplasmic reticulum (ER) membrane; they then dissociate from the chain, which is transferred to a set of transmembrane proteins, collectively called the translocon. Once the nascent chain translocon complex is assembled, the elongating chain passes directly from the large ribosomal subunit into the centers of the translocon, a protein-lined channel within the membrane. The growing chain is never exposed to the cytosol and does not fold until it reaches the ER lumen. [ISBN:0716731363];Stimulates the exchange of guanyl nucleotides associated with the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:mah];Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated. [GOC:mtg_transport, ISBN:0815340729];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0535700-01",0.005961510527056231,0.110519459722465,-0.712481539494742,"OS05G0535700",null,605.375055174321,602.626081487575,405.656773205102,331.549510229501,"no","OS05G0535700","Os05g0535700 protein [Source:UniProtKB/TrEMBL;Acc:Q6L5I8]","Conserved hypothetical protein. (Os05t0535700-01);Conserved hypothetical protein. (Os05t0535700-02)",5,26604986,26607206]
["OS01T0665400-01",0.005976541727287911,0.11064866129402601,0.33334803025042303,"OS01G0665400",null,901.02046477272,909.927952854843,1081.08121395564,1200.59406128374,"no","OS01G0665400","Ribokinase [Source:UniProtKB/TrEMBL;Acc:Q5SN59]","Ribokinase family protein. (Os01t0665400-01)",1,27185635,27191227,"GO:0006014;GO:0004747;GO:0005737;GO:0046835;GO:0016301;GO:0016310;GO:0005975;GO:0016773;GO:0046872;GO:0005634;GO:0005524;GO:0000166;GO:0016740;GO:0009116;GO:0019303;GO:0009507;GO:0009570;GO:0042646","D-ribose metabolic process;ribokinase activity;cytoplasm;carbohydrate phosphorylation;kinase activity;phosphorylation;carbohydrate metabolic process;phosphotransferase activity, alcohol group as acceptor;metal ion binding;nucleus;ATP binding;nucleotide binding;transferase activity;nucleoside metabolic process;D-ribose catabolic process;chloroplast;chloroplast stroma;plastid nucleoid","The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12. [ISBN:0198506732];Catalysis of the reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate. [EC:2.7.1.15];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose). [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The region of a plastid to which the DNA is confined. [GOC:jl]"]
["OS01T0828100-00",0.005995553731904491,0.11064866129402601,-0.8714558841197011,"OS01G0828100",null,127.406739928269,144.106236877464,65.3722394720468,83.0353907315847,"no","OS01G0828100","Os01g0828100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9Y3]","Similar to Cinnamoyl-CoA reductase. (Os01t0828100-00)",1,35431411,35432857,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0455400-00",5.9889326312405605E-3,0.11064866129402601,-0.8040512078368021,"OS02G0455400",null,215.062576998919,166.751502672494,118.060313076383,100.619355827685,"no","OS02G0455400","Os02g0455400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF86]","Hypothetical conserved gene. (Os02t0455400-00)",2,15106328,15107381]
["OS03T0142800-01",0.005996448731914221,0.11064866129402601,0.42539298527441904,"OS03G0142800","ABCC13",466.774453470774,431.072527891023,618.085305580979,587.667761648413,"no","OS03G0142800","ABC transporter C family member 13 [Source:UniProtKB/Swiss-Prot;Acc:Q10RX7]","Similar to MRP-like ABC transporter. (Os03t0142800-01);Hypothetical conserved gene. (Os03t0142800-02)",3,2367856,2374437,"GO:0042626;GO:0016887;GO:0055085;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020;GO:0000325;GO:0005774;GO:0016787;GO:0008281;GO:0009651;GO:0030007;GO:1901527;GO:0005773","ATPase activity, coupled to transmembrane movement of substances;ATPase activity;transmembrane transport;transport;integral component of membrane;ATP binding;nucleotide binding;membrane;plant-type vacuole;vacuolar membrane;hydrolase activity;sulfonylurea receptor activity;response to salt stress;cellular potassium ion homeostasis;abscisic acid-activated signaling pathway involved in stomatal movement;vacuole","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Combining with sulfonylurea, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. [GOC:ai, GOC:signaling];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. [GOC:mah];Any abscisic acid mediated signaling pathway that is involved in stomatal movement. [GOC:TermGenie, PMID:22730405];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS05T0357200-01",5.9965754124833405E-3,0.11064866129402601,0.29610634038898603,"OS05G0357200",null,931.598082355505,944.925181810799,1163.04043956238,1141.00395734695,"no","OS05G0357200","Nicotinamide adenine dinucleotide transporter 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G47490) UniProtKB/Swiss-Prot;Acc:O22261]","Adenine nucleotide translocator 1 domain containing protein. (Os05t0357200-01)",5,16928160,16932116,"GO:0022857;GO:0006839;GO:0016021;GO:0005743;GO:0006810;GO:0055085;GO:0016020;GO:0051724;GO:0035352;GO:0043132;GO:0005739;GO:0031969","transmembrane transporter activity;mitochondrial transport;integral component of membrane;mitochondrial inner membrane;transport;transmembrane transport;membrane;NAD transporter activity;NAD transmembrane transport;NAD transport;mitochondrion;chloroplast membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];Transport of substances into, out of or within a mitochondrion. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Enables the directed movement of nicotinamide adenine dinucleotide into, out of or within a cell, or between cells; transport may be of either the oxidized form, NAD, or the reduced form, NADH. [GOC:ai];The process in which nicotinamide adenine dinucleotide is transported from one side of a membrane to the other by means of some agent such as a transporter or pore; transport may be of either the oxidized form, NAD, or the reduced form, NADH. [GOC:bf];The directed movement of nicotinamide adenine dinucleotide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore; transport may be of either the oxidized form, NAD, or the reduced form, NADH. [GOC:jl];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz]"]
["OS06T0683700-01",0.005983839563709781,0.11064866129402601,-0.771861877547652,"OS06G0683700",null,377.787478573912,438.494692212854,208.800884283851,269.263877643994,"no","OS06G0683700","Os06g0683600 protein [Source:UniProtKB/TrEMBL;Acc:Q655G5]","Similar to wound induced protein. (Os06t0683700-01)",6,28490039,28490684]
["OS07T0686500-01",0.00599745296880426,0.11064866129402601,-0.633613110531545,"OS07G0686500",null,912.232257886408,823.464210728365,620.548422451071,498.212344389508,"no","OS07G0686500","Os07g0686500 protein [Source:UniProtKB/TrEMBL;Acc:Q0D3H5]","Protein of unknown function DUF632 domain containing protein. (Os07t0686500-01)",7,29162416,29166574]
["OS11T0142500-00",5.99226333567782E-3,0.11064866129402601,0.308636696784826,"OS11G0142500",null,1078.41663537886,1016.40752972995,1295.37541837097,1299.14133043671,"no","OS11G0142500","2-isopropylmalate synthase B, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAP8]","Similar to 2-isopropylmalate synthase B. (Os11t0142500-00)",11,1989143,1995037,"GO:0003852;GO:0009098;GO:0046912;GO:0019752;GO:0003824","2-isopropylmalate synthase activity;leucine biosynthetic process;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;carboxylic acid metabolic process;catalytic activity","Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+). [EC:2.3.3.13, RHEA:21527];The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer. [GOC:jl];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0566800-01",0.0060013100853557,0.11065300285322101,-0.404463768183881,"OS02G0566800",null,1126.2755809659,1303.13211347764,898.624366473956,936.834584842232,"no","OS02G0566800","Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0VKK2]","Similar to Avr9 elicitor response protein. (Os02t0566800-01)",2,21549807,21554990,"GO:0006486;GO:0008378;GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0016740","protein glycosylation;galactosyltransferase activity;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;transferase activity","A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr];Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [ISBN:0198506732];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0815800-03",6.0192194032824406E-3,0.11084942206695901,-0.65837098342264,"OS03G0815800",null,278.159973548988,244.369555271427,173.876902208579,157.194313624475,"no","OS03G0815800","AP2 domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q84TW0]","Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5). (Os03t0815800-01);Hypothetical conserved gene. (Os03t0815800-03)",3,34192560,34193650,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0111200-01",0.00601756743020019,0.11084942206695901,0.8922558436429641,"OS08G0111200",null,148.861198605696,105.480299021759,232.083465165178,239.993703531581,"no","OS08G0111200","Non-lysosomal glucosylceramidase [Source:UniProtKB/TrEMBL;Acc:Q6ZC53]","Beta-glucosidase, GBA2 type domain containing protein. (Os08t0111200-01);Similar to predicted protein. (Os08t0111200-02)",8,580320,586456,"GO:0004553;GO:0003824;GO:0006680;GO:0004348;GO:0008152;GO:0016798;GO:0006629;GO:0016787;GO:0016020","hydrolase activity, hydrolyzing O-glycosyl compounds;catalytic activity;glucosylceramide catabolic process;glucosylceramidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;lipid metabolic process;hydrolase activity;membrane","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. [GOC:ai];Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine. [EC:3.2.1.45];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0633200-01",0.006030343214419181,0.110930016287292,0.48501133329043306,"OS01G0633200",null,868.166669501589,820.228707688279,1283.36871578938,1079.70415303467,"no","OS01G0633200","Os01g0633200 protein [Source:UniProtKB/TrEMBL;Acc:Q9SBW2]","Similar to X1 (Fragment). (Os01t0633200-01);Similar to X1 (Fragment). (Os01t0633200-02)",1,25363099,25367117,"GO:0005655;GO:0031047","nucleolar ribonuclease P complex;gene silencing by RNA","A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. [GOC:mah, PMID:12045094];Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054]"]
["OS01T0699600-01",0.006042316568807261,0.110930016287292,-1.9043595615240099,"OS01G0699600",null,45.8664263741769,30.8799079023137,10.7327557342166,9.76886949783349,"no","OS01G0699600","Os01g0699600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JK34]","Serine/threonine protein kinase domain containing protein. (Os01t0699600-01)",1,28946730,28948045,"GO:0007346;GO:0004674;GO:0005737;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0023014;GO:0031098;GO:0032147","regulation of mitotic cell cycle;protein serine/threonine kinase activity;cytoplasm;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;signal transduction by protein phosphorylation;stress-activated protein kinase signaling cascade;activation of protein kinase activity","Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals. [GOC:mah];Any process that initiates the activity of an inactive protein kinase. [GOC:mah]"]
["OS07T0501900-03",0.006035361429003991,0.110930016287292,0.8513782190595971,"OS07G0501900",null,118.344594418708,101.071245373786,204.947233152155,190.928023558013,"no","OS07G0501900","Os07g0501900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X682]","Similar to predicted protein. (Os07t0501900-01);Similar to zinc finger family protein. (Os07t0501900-02);Similar to zinc finger family protein. (Os07t0501900-03)",7,18924529,18931500,"GO:0000209;GO:0042787;GO:0043161;GO:0061630;GO:0016020;GO:0016021;","protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;membrane;integral component of membrane;","Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS08T0276400-01",0.00604538089546808,0.110930016287292,-0.413977853954888,"OS08G0276400",null,1371.9157755476,1398.85982797481,958.142375545521,1121.46621835128,"no","OS08G0276400","Os08g0276400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZG00]","Serine/threonine protein kinase domain containing protein. (Os08t0276400-01)",8,10655519,10658544,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0466000-01",0.00603921938903512,0.110930016287292,0.505727909894339,"OS10G0466000",null,325.649784121178,312.510796748256,451.906513362521,454.179120964961,"no","OS10G0466000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q337M3]","Conserved hypothetical protein. (Os10t0466000-01);Hypothetical conserved gene. (Os10t0466000-02)",10,17192343,17195661]
["OS10T0551800-00",0.006036153831301231,0.110930016287292,-1.51496648371617,"OS10G0551800",null,2072.14321819337,2900.65268229066,667.382265654925,1072.62187086212,"no","OS10G0551800","Os10g0551800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XCD3]","Root-specific protein (RCc2 protein). (Os10t0551800-00)",10,21658192,21658818,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS01T0264500-01",0.0060500864705322,0.110949724998619,-0.34618969808329403,"OS01G0264500",null,1104.87124865795,1014.91963972271,801.05385979926,866.49872445783,"no","OS01G0264500","Os01g0264500 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDB3]","Similar to T11I18.15 protein. (Os01t0264500-01)",1,8988911,8992577,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0844400-02",0.006066241781683051,0.111179255497289,-0.318157137771491,"OS01G0844400",null,1233.29697804916,1217.69754919688,1001.07070187089,964.856807012776,"no","OS01G0844400","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:Q5N9N4]","Similar to palmitoyltransferase PFA4. (Os01t0844400-01);Zinc finger, DHHC-type domain containing protein. (Os01t0844400-02)",1,36257567,36261744,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0247800-01",0.0060723310598706,0.111194152760132,0.277471106088231,"OS06G0247800",null,3406.24856482151,3114.50543688661,3886.86612870187,4016.73368698936,"no","OS06G0247800","Os06g0247800 protein [Source:UniProtKB/TrEMBL;Acc:Q654U5]","Similar to Dynamin-like protein (Fragment). (Os06t0247800-01);Non-protein coding transcript. (Os06t0247800-02)",6,7661735,7669996,"GO:0000266;GO:0008017;GO:0003924;GO:0005737;GO:0005525;GO:0000166","mitochondrial fission;microtubule binding;GTPase activity;cytoplasm;GTP binding;nucleotide binding","The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. [PMID:11038192];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS07T0675000-02",0.00607433362649451,0.111194152760132,0.39755825539593703,"OS07G0675000",null,915.286995152344,980.70863515043,1331.7939871007,1165.75659136535,"no","OS07G0675000","Probable acyl-CoA dehydrogenase IBR3 [Source:Projected from Arabidopsis thaliana (AT3G06810) UniProtKB/Swiss-Prot;Acc:Q8RWZ3]","Similar to predicted protein. (Os07t0675000-01);Protein kinase-like domain containing protein. (Os07t0675000-02);Similar to IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase. (Os07t0675000-03)",7,28552641,28558965,"GO:0016627;GO:0050660;GO:0055114;GO:0008152;GO:0033539;GO:0003995;GO:0048767;","oxidoreductase activity, acting on the CH-CH group of donors;flavin adenine dinucleotide binding;oxidation-reduction process;metabolic process;fatty acid beta-oxidation using acyl-CoA dehydrogenase;acyl-CoA dehydrogenase activity;root hair elongation;","Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A fatty acid beta-oxidation pathway in which the initial step of each oxidation cycle, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA dehydrogenase; the electrons removed by oxidation pass through the respiratory chain to oxygen and leave H2O as the product. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, MetaCyc:FAO-PWY, MetaCyc:PWY-5136];Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. [EC:1.3.99.3];The process in which the root hair grows longer. [GOC:jid, PMID:12468740];"]
["OS05T0196800-00",0.006080092663133541,0.11123292876889601,-0.36207367884726305,"OS05G0196800","DGAT1-1",965.233461696568,918.162594962127,775.685528063839,689.682186547044,"no","OS05G0196800","Diacylglycerol O-acyltransferase 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q5I396]","Similar to Diacylglycerol acylCoA acyltransferase. (Os05t0196800-00)",5,5971951,5978628,"GO:0009941;GO:0005789;GO:0019432;GO:0006071;GO:0004144;GO:0005783;GO:0006629;GO:0016746;GO:0008374;GO:0016020;GO:0016021;GO:0016740","chloroplast envelope;endoplasmic reticulum membrane;triglyceride biosynthetic process;glycerol metabolic process;diacylglycerol O-acyltransferase activity;endoplasmic reticulum;lipid metabolic process;transferase activity, transferring acyl groups;O-acyltransferase activity;membrane;integral component of membrane;transferase activity","The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol. [ISBN:0198506732];The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:ai, ISBN:0198506732];Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol. [EC:2.3.1.20];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0681900-01",0.00609376229050551,0.11134965639923701,-1.13300696349614,"OS02G0681900",null,93.7713605872062,68.9651276485006,34.1496773361438,40.0523649411173,"no","OS02G0681900","Os02g0681900 protein [Source:UniProtKB/TrEMBL;Acc:Q84PD5]","GRAS transcription factor domain containing protein. (Os02t0681900-01)",2,27853890,27856029,"GO:0006355;GO:0043565;GO:0005634;GO:0003700;GO:0006351","regulation of transcription, DNA-templated;sequence-specific DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0830500-01",6.09088283109252E-3,0.11134965639923701,-1.59786765596331,"OS03G0830500",null,44.5357885826244,36.026559219366,12.6841658677106,13.9308065656116,"no","OS03G0830500","Os03g0830500 protein [Source:UniProtKB/TrEMBL;Acc:Q850Y9]","Similar to PGPS/D12. (Os03t0830500-01)",3,34883520,34884578]
["OS01T0916400-01",0.00610369871697162,0.111464556605449,0.352862471705559,"OS01G0916400",null,1334.16820098781,1506.77645178745,1761.29585197956,1866.85186946599,"no","OS01G0916400","Os01g0916400 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZW7]","Similar to Selenium binding protein. (Os01t0916400-01)",1,39948114,39951519,"GO:0008430","selenium binding","Interacting selectively and non-covalently with selenium (Se). [GOC:ai]"]
["OS11T0134100-00",0.0061177431769076,0.111654294827288,-1.17205210523035,"OS11G0134100",null,60.7550816946248,82.6783998989706,32.8251656627265,30.8291275227807,"no","OS11G0134100","Os11g0134100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XYL5]","Similar to LG27/30-like. (Os11t0134100-00)",11,1572300,1584345,"GO:0015074;GO:0030246;GO:0005975;GO:0003676;GO:0008270;GO:0003824","DNA integration;carbohydrate binding;carbohydrate metabolic process;nucleic acid binding;zinc ion binding;catalytic activity","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS04T0523812-00",0.00613668215087398,0.11193308243194101,2.10743746202293,"OS04G0523812",null,7.1347774359830805,12.3519631609255,32.1982672026499,51.7750083385175,"no","OS04G0523812","Os04g0523812 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KJD9]","Conserved hypothetical protein. (Os04t0523812-00)",4,26214048,26215366]
["OS04T0570800-01",0.006154487405742891,0.11199041049449501,0.546168370609295,"OS04G0570800",null,1045.1387009173,847.998645938751,1401.78953539646,1362.5741895175,"no","OS04G0570800","OSJNBa0088I22.11 protein [Source:UniProtKB/TrEMBL;Acc:Q7XU42]","Protein of unknown function DUF248, methyltransferase putative family protein. (Os04t0570800-01);Protein of unknown function DUF248, methyltransferase putative family protein. (Os04t0570800-02)",4,28722495,28727491,"GO:0032259;GO:0008757;GO:0005737;GO:0008168;GO:0016020;GO:0016021","methylation;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;methyltransferase activity;membrane;integral component of membrane","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0598900-01",0.00615359150564429,0.11199041049449501,0.245746150617897,"OS06G0598900",null,2684.623307481,2663.57725136149,3166.99553433421,3174.39715633763,"no","OS06G0598900","Os06g0598900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DB62]","Similar to Serine-threonine kinase receptor-associated protein (UNR-interacting protein) (WD-40 repeat protein PT-WD) (MAP activator with WD repeats). (Os06t0598900-01);Hypothetical gene. (Os06t0598900-02)",6,23613188,23621153]
["OS08T0473900-02",6.1511258923454305E-3,0.11199041049449501,"Inf","OS08G0473900",null,0,0,16.7971650571803,14.8029918079249,"no","OS08G0473900","Alpha-amylase [Source:UniProtKB/TrEMBL;Acc:Q0J527]","Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase). (Os08t0473900-01);Similar to Alpha amylase isozyme 3D. (Os08t0473900-02);Similar to Alpha amylase isozyme 3D. (Os08t0473900-03)",8,23341289,23343299,"GO:0004556;GO:0008152;GO:0016798;GO:0005975;GO:0043169;GO:0016787;GO:0003824;GO:0103025;GO:0005987;GO:0005983;GO:0005509;GO:0046872","alpha-amylase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;cation binding;hydrolase activity;catalytic activity;;sucrose catabolic process;starch catabolic process;calcium ion binding;metal ion binding","Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. [EC:3.2.1.1];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];;The chemical reactions and pathways resulting in the breakdown of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants. [GOC:ai];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS12T0242500-01",6.1490816752892506E-3,0.11199041049449501,0.700953831953503,"OS12G0242500",null,107.021661539746,119.402310555613,178.554027214695,189.51606825797,"no","OS12G0242500","Os12g0242500 protein [Source:UniProtKB/TrEMBL;Acc:C7J9S7]","Conserved hypothetical protein. (Os12t0242500-01)",12,7892375,7893898]
["OS07T0553450-00",0.00617498389358463,0.11229649280761801,-0.5075380826079791,"OS07G0553450",null,1047.79302917009,1150.79123449289,707.386173391551,839.145889863897,"no","OS07G0553450",null,"Hypothetical protein. (Os07t0553450-00)",7,22015761,22019154]
["OS07T0486500-01",0.0061920136550279,0.11253920356241101,"-Inf","OS07G0486500",null,55.480451569402,23.3443317369869,0,0,"no","OS07G0486500","Auxin-regulated protein-like [Source:UniProtKB/TrEMBL;Acc:Q84ZE8]","RhoGAP domain containing protein. (Os07t0486500-01);RhoGAP domain containing protein. (Os07t0486500-02)",7,17907341,17912298,"GO:0043087;GO:0005737;GO:0007165","regulation of GTPase activity;cytoplasm;signal transduction","Any process that modulates the rate of GTP hydrolysis by a GTPase. [GOC:jl, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]"]
["OS05T0140500-01",0.00620105902884181,0.11263659658096,-0.26335635320856204,"OS05G0140500","Y14A",2335.11072940532,2435.39540322914,1958.24006896116,2016.29466435283,"no","OS05G0140500","RNA-binding protein Y14A [Source:UniProtKB/Swiss-Prot;Acc:B7FAL5]","RNA binding motif protein 8 family protein. (Os05t0140500-01);Core subunit of exon junction complex (EJC), Multiple organ development and reproduction (Os05t0140500-02)",5,2331061,2334123,"GO:0000184;GO:0008380;GO:0035145;GO:0006417;GO:0003729;GO:0006397;GO:0051028;GO:0003723;GO:0005737;GO:0006396;GO:0006810;GO:0005634;GO:0003676;GO:0000381","nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;RNA splicing;exon-exon junction complex;regulation of translation;mRNA binding;mRNA processing;mRNA transport;RNA binding;cytoplasm;RNA processing;transport;nucleus;nucleic acid binding;regulation of alternative mRNA splicing, via spliceosome","The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. [GOC:krc, GOC:ma, PMID:10025395];The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. [PMID:11532962, PMID:11743026];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. [GOC:krc]"]
["OS03T0133900-01",0.00620809666123323,0.11269742673440201,0.3693249703973,"OS03G0133900","SAT2",541.223831215288,597.011552778064,724.948864592996,745.364742684695,"no","OS03G0133900","Probable serine acetyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q10S58]","Similar to Serine acetyltransferase (EC 2.3.1.30) (Sat-106). (Os03t0133900-01)",3,1892829,1897309,"GO:0019344;GO:0009001;GO:0005829;GO:0006535;GO:0016740;GO:0008652;GO:0016746;GO:0005737","cysteine biosynthetic process;serine O-acetyltransferase activity;cytosol;cysteine biosynthetic process from serine;transferase activity;cellular amino acid biosynthetic process;transferase activity, transferring acyl groups;cytoplasm","The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators];Catalysis of the reaction: L-serine + acetyl-CoA = O-acetyl-L-serine + CoA. [EC:2.3.1.30, RHEA:24563];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS05T0582300-01",0.006221928531952581,0.11284056129622601,0.7373246418408571,"OS05G0582300",null,125.506279996496,147.775202397382,252.96321826055,202.6192870866,"no","OS05G0582300",null,"Similar to prenyl transferase. (Os05t0582300-01)",5,28984653,28987389,"GO:0008299;GO:0015979;GO:0016765;GO:0006468;GO:0005524;GO:0004672;GO:0016740","isoprenoid biosynthetic process;photosynthesis;transferase activity, transferring alkyl or aryl (other than methyl) groups;protein phosphorylation;ATP binding;protein kinase activity;transferase activity","The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0424300-01",0.006223368217600811,0.11284056129622601,0.7196511547609761,"OS09G0424300",null,547.783057235546,691.187502037272,1096.81010369504,943.506532411446,"no","OS09G0424300","S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:Q6F4N6]","S-adenosylmethionine decarboxylase. (Os09t0424300-01);S-adenosylmethionine decarboxylase. (Os09t0424300-03)",9,15385723,15389096,"GO:0008295;GO:0006597;GO:0004014;GO:0005829;GO:0006557;GO:0016831;GO:0006596;GO:0016829","spermidine biosynthetic process;spermine biosynthetic process;adenosylmethionine decarboxylase activity;cytosol;S-adenosylmethioninamine biosynthetic process;carboxy-lyase activity;polyamine biosynthetic process;lyase activity","The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. [CHEBI:15746, GOC:curators];Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2). [EC:4.1.1.50, RHEA:15984];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. [GOC:mah, MetaCyc:S-ADENOSYLMETHIONINAMINE];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS05T0454500-01",6.2271911728930705E-3,0.11284290908317302,-0.496348309159556,"OS05G0454500",null,1008.04212631247,1006.68499761543,782.515463531067,645.722273806794,"no","OS05G0454500","Os05g0454500 protein [Source:UniProtKB/TrEMBL;Acc:Q60EN2]","Conserved hypothetical protein. (Os05t0454500-01)",5,22303574,22306360]
["OS02T0822500-04",6.2384126679044605E-3,0.11288992808334401,0.643242203582024,"OS02G0822500",null,1136.90989714309,966.85058331582,1618.03841033905,1667.68869384346,"no","OS02G0822500","Phosphatidylinositol 4-phosphate 5-kinase 9 [Source:Projected from Arabidopsis thaliana (AT3G09920) UniProtKB/Swiss-Prot;Acc:Q8L850]","Similar to Junctophilin-2 (Junctophilin type 2) (JP-2). (Os02t0822500-01);Similar to predicted protein. (Os02t0822500-02);Similar to Junctophilin-2 (Junctophilin type 2) (JP-2). (Os02t0822500-03);Hypothetical conserved gene. (Os02t0822500-04);Similar to phosphatidylinositol-4-phosphate 5-kinase 9. (Os02t0822500-05)",2,35307400,35313636,"GO:0046854;GO:0046488;GO:0016307;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740;GO:0016308;GO:0030154;GO:0009908;GO:0007275;GO:0005975;GO:0006520;GO:0005634;GO:0005829;GO:0016020","phosphatidylinositol phosphorylation;phosphatidylinositol metabolic process;phosphatidylinositol phosphate kinase activity;phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity;1-phosphatidylinositol-4-phosphate 5-kinase activity;cell differentiation;flower development;multicellular organism development;carbohydrate metabolic process;cellular amino acid metabolic process;nucleus;cytosol;membrane","The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. [EC:2.7.1.-, PMID:9759495];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ADP + 2 H(+). [EC:2.7.1.68, RHEA:14428];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0467800-01",0.006237525746060611,0.11288992808334401,0.538254173266526,"OS10G0467800","CESA7",1468.76478021932,1356.08720156538,1869.45828805358,2232.83161205344,"no","OS10G0467800","Cellulose synthase A catalytic subunit 7 [UDP-forming] [Source:UniProtKB/Swiss-Prot;Acc:Q9AV71]","Secondary wall-specific cellulose synthase, Secondary cell wall formation (Os10t0467800-01)",10,17262050,17266561,"GO:0030244;GO:0016760;GO:0016020;GO:0016021;GO:0009833;GO:0016759;GO:0005794;GO:0005886;GO:0046872;GO:0016757;GO:0009834;GO:0071555;GO:0016740","cellulose biosynthetic process;cellulose synthase (UDP-forming) activity;membrane;integral component of membrane;plant-type primary cell wall biogenesis;cellulose synthase activity;Golgi apparatus;plasma membrane;metal ion binding;transferase activity, transferring glycosyl groups;plant-type secondary cell wall biogenesis;cell wall organization;transferase activity","The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];Catalysis of the reaction: nucleoside-disphosphate-glucose + ((1,4)-beta-D-glucosyl)(n) = nucleoside-disphosphate + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12, EC:2.4.1.29];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0566250-01",6.2408709260528905E-3,0.11288992808334401,0.547982921964937,"OS12G0566250",null,404.139299435145,349.782565473546,592.786994329662,509.477035542802,"no","OS12G0566250","Os12g0566250 protein [Source:UniProtKB/TrEMBL;Acc:C7J9V5]","Hypothetical protein. (Os12t0566250-01)",12,23270522,23272015,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0598600-03",0.00626071337185876,0.11292580290006901,0.46451825505717204,"OS01G0598600",null,386.66003629854,341.939837325441,480.813518249095,524.549763883257,"no","OS01G0598600","Nucleoid DNA-binding protein cnd41-like [Source:UniProtKB/TrEMBL;Acc:Q94D20]","Peptidase A1 domain containing protein. (Os01t0598600-01);Similar to predicted protein. (Os01t0598600-03)",1,23515008,23516765,"GO:0004190;GO:0006508;GO:0030163;GO:0003677;GO:0016787;GO:0008233","aspartic-type endopeptidase activity;proteolysis;protein catabolic process;DNA binding;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS02T0597900-01",0.00626198337018952,0.11292580290006901,-0.30809678914354804,"OS02G0597900",null,1298.52949334892,1410.18246087232,1122.06082675901,1065.78366221363,"no","OS02G0597900","Os02g0597900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLC3]","Similar to B-keto acyl reductase. (Os02t0597900-01)",2,23241660,23242066]
["OS04T0585700-01",0.006256132317126611,0.11292580290006901,-0.8016405608922741,"OS04G0585700",null,704.919270331172,550.8610620426,392.327020213592,328.109670129826,"no","OS04G0585700","OSJNBa0013K16.12 protein [Source:UniProtKB/TrEMBL;Acc:Q7XP55]","Protein of unknown function DUF581 family protein. (Os04t0585700-01)",4,29588252,29590515]
["OS07T0563000-01",0.0062527458957964,0.11292580290006901,-0.32811232991814904,"OS07G0563000",null,976.445254810256,936.690539703515,791.29680913179,732.665212337512,"no","OS07G0563000","Os07g0563000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7J9]","Similar to D-erythro-sphingosine kinase/ diacylglycerol kinase. (Os07t0563000-01)",7,22518146,22518738]
["OS10T0513300-01",0.00625789758725027,0.11292580290006901,0.35262178116555204,"OS10G0513300",null,631.871150493041,670.494230173785,819.777726197456,843.185235775324,"no","OS10G0513300","UPF0496 protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q337C0]","Similar to UPF0496 protein 4. (Os10t0513300-01);Similar to cDNA clone:J033112M21, full insert sequence. (Os10t0513300-02)",10,19801017,19803765,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0558750-01",0.0062650312881519,0.11292580290006901,0.85766520876465,"OS10G0558750",null,94.444387801891,68.0777756585776,149.170510036598,145.336440605698,"no","OS10G0558750","Os10g0558750 protein [Source:UniProtKB/TrEMBL;Acc:Q336T0]","Similar to Oxidoreductase, 2OG-Fe oxygenase family protein, expressed. (Os10t0558750-01)",10,21992040,21993690,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS02T0174200-01",0.00628224500500459,0.11316930978355,-0.32693631612816604,"OS02G0174200",null,2057.95262770459,2127.10720503527,1750.87951042225,1585.5659772244,"no","OS02G0174200","Os02g0174200 protein [Source:UniProtKB/TrEMBL;Acc:Q8GV28]","ATMRK serine/threonine protein kinase-like domain containing protein. (Os02t0174200-01)",2,4078521,4081527,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0004674;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;protein serine/threonine kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS07T0555200-01",0.00628921268670059,0.113228064822673,0.6803886633226891,"OS07G0555200",null,148.861150737893,154.018770008996,267.879962627242,217.506745443909,"no","OS07G0555200","Os07g0555200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7E2]","Similar to Eukaryotic translation initiation factor 4g (Fragment). (Os07t0555200-01);Similar to Eukaryotic translation initiation factor 4g (Fragment). (Os07t0555200-02);Similar to predicted protein. (Os07t0555200-03);Similar to predicted protein. (Os07t0555200-04);Similar to predicted protein. (Os07t0555200-05)",7,22114961,22123129,"GO:0006417;GO:0003743;GO:0006413;GO:0006412;GO:0003723","regulation of translation;translation initiation factor activity;translational initiation;translation;RNA binding","Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS02T0327700-03",0.006294157306768021,0.11325034984474501,-0.577933831063916,"OS02G0327700",null,2837.62051900039,3435.18235329171,1987.48871176642,2214.80323592133,"no","OS02G0327700","Os02g0327700 protein [Source:UniProtKB/TrEMBL;Acc:Q6YWE6]","Glycosyltransferase AER61, uncharacterized domain containing protein. (Os02t0327700-01);Hypothetical conserved gene. (Os02t0327700-03)",2,13223120,13227352,"GO:0016757","transferase activity, transferring glycosyl groups","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732]"]
["OS09T0313550-01",0.00629796700357553,0.11325220005487902,-0.49046867439449604,"OS09G0313550",null,360.815887476859,383.9401882521,278.075944022886,252.036833044104,"no","OS09G0313550","Os09g0313550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJV6]","Hypothetical gene. (Os09t0313550-01)",9,8533820,8542200]
["OS03T0610650-01",6.3037752296447105E-3,0.113289965185944,0.41328620514421105,"OS03G0610650",null,1503.28081825331,1660.53040747832,1977.51188880372,2235.78543233503,"no","OS03G0610650","Serpin-ZXA [Source:UniProtKB/Swiss-Prot;Acc:Q75H81]","Similar to cDNA clone:002-125-A07, full insert sequence. (Os03t0610650-01)",3,23048126,23050530,"GO:0005615;GO:0004867;GO:0010951;GO:0010466;GO:0030414;GO:0016020;GO:0016021","extracellular space;serine-type endopeptidase inhibitor activity;negative regulation of endopeptidase activity;negative regulation of peptidase activity;peptidase inhibitor activity;membrane;integral component of membrane","That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. [GOC:ai];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0724600-01",6.32138622672118E-3,0.11342611049306,0.979927377780561,"OS03G0724600",null,45.8664263741769,43.2318710632392,86.83775094048,88.8967124302848,"no","OS03G0724600","Os03g0724600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DP01]","Conserved hypothetical protein. (Os03t0724600-01)",3,29451126,29453520]
["OS03T0762200-01",0.0063173422473468,0.11342611049306,1.61267910200994,"OS03G0762200",null,26.5107721167597,18.2407318002194,73.6232789124865,63.2354234448007,"no","OS03G0762200","Os03g0762200 protein [Source:UniProtKB/TrEMBL;Acc:Q0DNB5]","Hypothetical protein. (Os03t0762200-01)",3,31526602,31528069]
["OS08T0406400-01",0.006322488418751051,0.11342611049306,0.475320417335275,"OS08G0406400",null,304.75692190842,300.564436915853,447.848625636858,393.68544076269,"no","OS08G0406400","Os08g0406400 protein [Source:UniProtKB/TrEMBL;Acc:Q0J5T2]","Similar to Sulfate transporter (Fragment). (Os08t0406400-01)",8,19430807,19432690,"GO:0015116;GO:0005887;GO:0005886;GO:1902358;GO:0008272;GO:0008271;GO:0055085;GO:0016021;GO:0016020","sulfate transmembrane transporter activity;integral component of plasma membrane;plasma membrane;sulfate transmembrane transport;sulfate transport;secondary active sulfate transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane","Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other. [GOC:ai];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of sulfate across a membrane. [GOC:dph, GOC:TermGenie, PMID:9055073];The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0184900-01",0.006348147107087381,0.11351782153032,0.261657247160614,"OS02G0184900",null,6835.5944626728,7123.80950044785,8316.83588882828,8418.46616140832,"no","OS02G0184900","Os02g0184900 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIH6]","Cytochrome P450 family protein. (Os02t0184900-01)",2,4740049,4743113,"GO:0044550;GO:0016020;GO:0016709;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0714200-01",0.0063395780912507,0.11351782153032,-0.328640613674939,"OS02G0714200",null,5157.23025014677,5786.45387116548,4249.02406824197,4465.28314748259,"no","OS02G0714200","Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Source:UniProtKB/TrEMBL;Acc:Q6ZFT9]","Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK). (Os02t0714200-01)",2,29604459,29610149,"GO:0047334;GO:0003872;GO:0046835;GO:0003824;GO:0006096;GO:0061615;GO:0008152;GO:0005737;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0016740","diphosphate-fructose-6-phosphate 1-phosphotransferase activity;6-phosphofructokinase activity;carbohydrate phosphorylation;catalytic activity;glycolytic process;glycolytic process through fructose-6-phosphate;metabolic process;cytoplasm;phosphorylation;kinase activity;metal ion binding;ATP binding;transferase activity","Catalysis of the reaction: fructose-6-phosphate + diphosphate = phosphate + fructose-1,6-bisphosphate. [EC:2.7.1.90, MetaCyc:2.7.1.90-RXN];Catalysis of the reaction: ATP + D-fructose-6-phosphate = ADP + D-fructose 1,6-bisphosphate. [EC:2.7.1.11];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH. [GOC:dph, ISBN:0201090910, ISBN:0879010479];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0819300-01",0.00633571400967213,0.11351782153032,0.253434617012231,"OS02G0819300",null,1822.42600793396,1791.03465833419,2170.943773512,2136.45175917618,"no","OS02G0819300","Os02g0819300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRF7]","Hypothetical conserved gene. (Os02t0819300-01)",2,35162641,35168331,"GO:0003723","RNA binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS03T0128300-01",0.006332869040746911,0.11351782153032,-0.543007346131758,"OS03G0128300",null,368.969918832268,444.670673793317,285.881584556861,272.551458989554,"no","OS03G0128300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SNL4]","Conserved hypothetical protein. (Os03t0128300-01)",3,1608031,1609003]
["OS08T0398700-02",0.00634989385294964,0.11351782153032,-0.630912563083736,"OS08G0398700",null,339.351251867263,290.110188020158,202.962037419307,203.523899223112,"no","OS08G0398700","Aminopeptidase M1-B [Source:UniProtKB/Swiss-Prot;Acc:Q0J5V5]","Peptidase M1, membrane alanine aminopeptidase family protein. (Os08t0398700-01);Similar to APM1 (AMINOPEPTIDASE M1). (Os08t0398700-02)",8,19021817,19031571,"GO:0006508;GO:0043171;GO:0070006;GO:0042277;GO:0043231;GO:0031090;GO:0005737;GO:0008270;GO:0004177;GO:0005783;GO:0008237;GO:0046872;GO:0016787;GO:0008233;GO:0016020","proteolysis;peptide catabolic process;metalloaminopeptidase activity;peptide binding;intracellular membrane-bounded organelle;organelle membrane;cytoplasm;zinc ion binding;aminopeptidase activity;endoplasmic reticulum;metallopeptidase activity;metal ion binding;hydrolase activity;peptidase activity;membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. [GOC:jl];Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#AMINOPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds. [GOC:jl];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle. [GOC:dos, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0544500-02",0.006343559818854921,0.11351782153032,0.264946955171378,"OS10G0544500",null,1704.24589736731,1679.52309583413,1990.78489434436,2075.12441357063,"no","OS10G0544500","Os10g0544500 protein [Source:UniProtKB/TrEMBL;Acc:Q7G1Q5]","WD40 repeat-like domain containing protein. (Os10t0544500-01);Similar to nucleotide binding protein. (Os10t0544500-02)",10,21253585,21256612]
["OS01T0757200-01",0.00636388097218909,0.11356851136817801,0.605177757378344,"OS01G0757200",null,182.446451577282,205.866052682091,268.318893355416,322.368950603172,"no","OS01G0757200","Gibberellin 2-oxidase [Source:UniProtKB/TrEMBL;Acc:Q8S0S6]","GA 2-oxidase3, GA metabolism (Os01t0757200-01)",1,31795105,31797640,"GO:0045487;GO:0052634;GO:0009416;GO:0055114;GO:0046872;GO:0016491;GO:0009685","gibberellin catabolic process;C-19 gibberellin 2-beta-dioxygenase activity;response to light stimulus;oxidation-reduction process;metal ion binding;oxidoreductase activity;gibberellin metabolic process","The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [GOC:go_curators];Catalysis of the reaction: a C-19 gibberellin + 2-oxoglutarate + O2 = a C-19 2-beta-hydroxygibberellin + succinate + CO2. C-19 gibberellin refers to a gibberellin with nineteen carbons. [EC:1.14.11.13, GOC:kad];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [ISBN:0387969845]"]
["OS01T0838600-00",0.00636332363142814,0.11356851136817801,1.26340510732549,"OS01G0838600",null,22.4235862273754,28.8212473754928,56.5908938713241,66.4283125852677,"no","OS01G0838600","Os01g0838600 protein [Source:UniProtKB/TrEMBL;Acc:Q5NA12]","Zinc finger, C2H2-like domain containing protein. (Os01t0838600-00)",1,35965949,35966946,"GO:0005634;GO:0003676","nucleus;nucleic acid binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0724100-01",6.3569707589053994E-3,0.11356851136817801,-0.280062242881679,"OS03G0724100",null,1599.20939957964,1516.2034780036,1274.27081717154,1291.44454761359,"no","OS03G0724100","CRAL/TRIO domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q75GU9]","Phosphatidylinositol transfer protein-like, N-terminal domain containing protein. (Os03t0724100-01)",3,29421194,29425439]
["OS05T0575000-01",0.00637325239566379,0.11358583696745601,-0.78947538768496,"OS05G0575000",null,130.464501686548,132.783603979949,75.1292901395164,77.1740690328846,"no","OS05G0575000","Os05g0575000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQM6]","Similar to predicted protein. (Os05t0575000-01)",5,28647699,28648244]
["OS08T0536100-04",0.006384038459184171,0.11358583696745601,0.295590846878726,"OS08G0536100",null,1215.83211971094,1142.58177411925,1464.84725665302,1429.84057870481,"no","OS08G0536100","Os08g0536100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIG8]","Hypothetical conserved gene. (Os08t0536100-01);Hypothetical conserved gene. (Os08t0536100-02);Conserved hypothetical protein. (Os08t0536100-03);Hypothetical conserved gene. (Os08t0536100-04)",8,26785706,26791061]
["OS09T0442900-01",6.3854775606489705E-3,0.11358583696745601,0.353471060491133,"OS09G0442900",null,736.92058374511,834.78684362588,1029.36884541805,978.693060049745,"no","OS09G0442900","Os09g0442900 protein [Source:UniProtKB/TrEMBL;Acc:Q67UT6]","Similar to Axi 1 (Auxin-independent growth promoter)-like protein. (Os09t0442900-01)",9,16477066,16481692,"GO:0005737;GO:0016020;GO:0016021","cytoplasm;membrane;integral component of membrane","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0159300-01",0.00638715854641557,0.11358583696745601,0.667223533810369,"OS10G0159300",null,158.479092845338,174.851539994573,291.124232629031,238.209443143843,"no","OS10G0159300","Os10g0159300 protein [Source:UniProtKB/TrEMBL;Acc:Q0IYV1]","Conserved hypothetical protein. (Os10t0159300-01);Conserved hypothetical protein. (Os10t0159300-02)",10,3753397,3757307]
["OS10T0477000-01",0.006368841383377161,0.11358583696745601,0.28490418267612905,"OS10G0477000",null,1091.62094770541,1066.38615289323,1315.25042997491,1313.9129474586,"no","OS10G0477000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q337K5]","Armadillo-like helical domain containing protein. (Os10t0477000-01)",10,17778502,17793323,"GO:0008536;GO:0005643;GO:0005737;GO:0006611;GO:0005049","Ran GTPase binding;nuclear pore;cytoplasm;protein export from nucleus;nuclear export signal receptor activity","Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of a protein from the nucleus into the cytoplasm. [GOC:jl];Combining with a nuclear export signal (NES) to mediate transport of the NES-containing protein through the nuclear pore to the cytoplasm. [GOC:bf, GOC:mah, GOC:vw, PMID:11743003, PMID:12486120]"]
["OS11T0523800-01",0.006379290037979461,0.11358583696745601,-0.254974362004714,"OS11G0523800",null,4036.24552092757,3911.87628601082,3428.02326496001,3232.5189168331,"no","OS11G0523800","Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2Y4]","Similar to Isoform 3 of Auxin response factor 23. (Os11t0523800-01)",11,18935399,18941686,"GO:0009725;GO:0003677;GO:0005634;GO:0009734;GO:0006355;GO:0006351","response to hormone;DNA binding;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0102000-01",0.00639110466869485,0.11358989519369701,-1.17314333739407,"OS08G0102000","SNAT2",74.4055361181093,73.0824487021424,39.0282026698787,26.3759476441504,"no","OS08G0102000","Serotonin N-acetyltransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6Z1Y6]","Serotonin N-acetyltransferase, Melatonin synthesis (Os08t0102000-01)",8,109493,110375,"GO:0016746;GO:0005737;GO:0008080;GO:0009536;GO:0009507;GO:0030187;GO:0004059;GO:0016740","transferase activity, transferring acyl groups;cytoplasm;N-acetyltransferase activity;plastid;chloroplast;melatonin biosynthetic process;aralkylamine N-acetyltransferase activity;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the formation of melatonin (N-acetyl-5-methoxytryptamine). [GOC:mah, ISBN:0198506732];Catalysis of the reaction: acetyl-CoA + an aralkylamine = CoA + an N-acetylaralkylamine. [EC:2.3.1.87];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0491740-01",6.4004953097859E-3,0.11369065854917401,0.8485055603371491,"OS09G0491740",null,200.793022126952,145.135567140874,299.541455491319,323.349580378288,"no","OS09G0491740","Os09g0491740 protein [Source:UniProtKB/TrEMBL;Acc:B7EM10]","Auxin efflux carrier domain containing protein. (Os09t0491740-01)",9,18978153,18983471,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0430200-01",0.006414899432005371,0.113814173894674,1.25305549545189,"OS04G0430200",null,57.4241092704193,55.3558129089394,103.694531406282,165.111544473987,"no","OS04G0430200","Os04g0430200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JD56]","PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0430200-01);Similar to phospholipase C. (Os04t0430200-02)",4,21332222,21335533,"GO:0008081;GO:0006629","phosphoric diester hydrolase activity;lipid metabolic process","Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma]"]
["OS07T0255200-01",0.00641399827031721,0.113814173894674,1.07317611405055,"OS07G0255200",null,47.1445518305539,47.738272918941,104.419330550106,95.2198628490178,"no","OS07G0255200","Os07g0255200 protein [Source:UniProtKB/TrEMBL;Acc:Q0D7F1]","Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)]. (Os07t0255200-01)",7,8704268,8706000,"GO:0000723;GO:0003678;GO:0032508;GO:0004386;GO:0006281","telomere maintenance;DNA helicase activity;DNA duplex unwinding;helicase activity;DNA repair","Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS06T0235850-01",6.4231226318392405E-3,0.11382786696517,0.905175409718712,"OS06G0235850",null,55.0397116490123,63.8184763314483,112.206082675901,110.388225325518,"no","OS06G0235850","Os06g0235850 protein [Source:UniProtKB/TrEMBL;Acc:C7J3V4]","Conserved hypothetical protein. (Os06t0235850-01)",6,7077881,7079552]
["OS07T0609550-01",0.00642041226541201,0.11382786696517,-0.793005523123495,"OS07G0609550",null,125.368232089417,131.754273716538,75.1292901395164,73.2665212337512,"no","OS07G0609550","Os07g0609550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X8W6]","Hypothetical conserved gene. (Os07t0609550-01)",7,25059656,25061534]
["OS03T0215000-03",0.00642765559060845,0.11384216440827201,-0.403948642034386,"OS03G0215000",null,6151.35634146935,6524.44476348661,4442.66548590761,5137.53853890848,"no","OS03G0215000","Os03g0215000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VUL9]","Similar to integral membrane family protein. (Os03t0215000-01);Similar to integral membrane family protein. (Os03t0215000-02);Similar to integral membrane family protein. (Os03t0215000-03)",3,6013161,6017199,"GO:0005794;GO:0015780;GO:0016020;GO:0016021","Golgi apparatus;nucleotide-sugar transport;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0112200-01",0.006432948398714691,0.11386989540992501,0.8796716924778111,"OS11G0112200",null,64.1447565412234,52.0511460291943,108.67527900503,105.120132210358,"no","OS11G0112200","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5U1G2]","Similar to Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1). (Os11t0112200-01)",11,571319,573032,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0126900-01",0.006440836270156141,0.11394350302594701,-1.98025752723609,"OS01G0126900",null,888.059563175231,728.329908370754,129.011669484962,280.653553919855,"no","OS01G0126900",null,"Multicopper oxidase (Os01t0126900-01)",1,1486400,1488897,"GO:0005789;GO:0005783;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0016020","endoplasmic reticulum membrane;endoplasmic reticulum;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0211500-01",6.45777573197325E-3,0.114159472597361,0.46955849798008,"OS03G0211500",null,273.160050406209,281.007161911054,401.014782433003,366.332606168756,"no","OS03G0211500","Os03g0211500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VUS0]","Hypothetical conserved gene. (Os03t0211500-01)",3,5814166,5816687]
["OS06T0140400-02",0.006460517416890471,0.114159472597361,-0.9826929341854841,"OS06G0140400","HOX28",181.22775542486,147.09932867463,76.0536115063878,90.0911527968074,"no","OS06G0140400","Homeobox leucine zipper protein [Source:UniProtKB/TrEMBL;Acc:B7E3F1]","Similar to HAHB-6 (Fragment). (Os06t0140400-01);Similar to HAHB-6 (Fragment). (Os06t0140400-02)",6,2123412,2124781,"GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0678400-01",6.4709862026720005E-3,0.11421234573312201,-0.665190835268477,"OS04G0678400",null,340.14512927121,413.842726848057,218.251965966499,257.216760451978,"no","OS04G0678400","OSJNBa0064G10.24 protein [Source:UniProtKB/TrEMBL;Acc:Q7FAN8]","Zinc finger, Dof-type domain containing protein. (Os04t0678400-01)",4,34655316,34656735,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0482700-02",0.006467685167443141,0.11421234573312201,-0.33663951557005,"OS12G0482700",null,778.409225722181,804.817606191143,613.250982122003,640.480552388943,"no","OS12G0482700","L-galactose dehydrogenase [Source:Projected from Arabidopsis thaliana (AT4G33670) UniProtKB/Swiss-Prot;Acc:O81884]","Similar to L-galactose dehydrogenase. (Os12t0482700-01);Similar to L-galactose dehydrogenase. (Os12t0482700-02)",12,17788701,17791111,"GO:0055114;GO:0010349;GO:0019853;GO:0005829","oxidation-reduction process;L-galactose dehydrogenase activity;L-ascorbic acid biosynthetic process;cytosol","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: L-galactose + NAD+ = L-galactono-1,4-lactone + NADH + H+. [PMID:12047629];The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. [CHEBI:38290, GOC:ma, ISBN:0198547684];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS08T0472800-01",0.00650384731175413,0.11472606412743201,0.8827834955591931,"OS08G0472800","CYP707A6",56.0589655684385,72.0531184387319,120.987428276624,115.242222421757,"no","OS08G0472800","Abscisic acid 8'-hydroxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZDE3]","Cytochrome P450 family protein. (Os08t0472800-01)",8,23288613,23294162,"GO:0046345;GO:0016125;GO:0010268;GO:0010295;GO:0007275;GO:0016132;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","abscisic acid catabolic process;sterol metabolic process;brassinosteroid homeostasis;(+)-abscisic acid 8'-hydroxylase activity;multicellular organism development;brassinosteroid biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. [GOC:ai];The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];Catalysis of the reaction: (+)-abscisate + H(+) + NADPH + O(2) = (+)-8'-hydroxyabscisate + H(2)O + NADP(+). [EC:1.14.13.93, RHEA:12900];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0598900-01",0.00651893945902482,0.11492593095910401,-0.284156974921777,"OS03G0598900",null,1700.11553760283,1710.74689778818,1333.7888262431,1467.28419857459,"no","OS03G0598900","Os03g0598900 protein [Source:UniProtKB/TrEMBL;Acc:Q8H8S2]","Similar to predicted protein. (Os03t0598900-01)",3,22341131,22345527,"GO:0055114;GO:0015035;GO:0009817;GO:0005829","oxidation-reduction process;protein disulfide oxidoreductase activity;defense response to fungus, incompatible interaction;cytosol","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];A response of an organism to a fungus that prevents the occurrence or spread of disease. [GOC:lr];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS02T0805200-01",6.5274118321572904E-3,0.114942643398311,-0.285238258536238,"OS02G0805200",null,2147.56800823091,2299.52380845896,1892.86782948912,1756.44273571046,"no","OS02G0805200","Proliferating cell nuclear antigen [Source:UniProtKB/Swiss-Prot;Acc:P17070]","Proliferating cell nuclear antigen (PCNA) (Cyclin). (Os02t0805200-01)",2,34351407,34353530,"GO:0043626;GO:0045740;GO:0045739;GO:0034644;GO:0006275;GO:0030337;GO:0003684;GO:0003682;GO:0006272;GO:0005515;GO:0006260;GO:0003677;GO:0005634;GO:0006298;GO:0070207;GO:0019985","PCNA complex;positive regulation of DNA replication;positive regulation of DNA repair;cellular response to UV;regulation of DNA replication;DNA polymerase processivity factor activity;damaged DNA binding;chromatin binding;leading strand elongation;protein binding;DNA replication;DNA binding;nucleus;mismatch repair;protein homotrimerization;translesion synthesis","A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation. [GOC:jl, PMID:12829735];Any process that activates or increases the frequency, rate or extent of DNA replication. [GOC:go_curators];Any process that activates or increases the frequency, rate or extent of DNA repair. [GOC:go_curators];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:mah];Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators];An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it. [GOC:mah, PMID:7903401, PMID:8087839];Interacting selectively and non-covalently with damaged DNA. [GOC:jl];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork. [ISBN:071673706X, ISBN:0815316194];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:0198506732, PMID:11687886];The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits. [GOC:hjd];The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide. [GOC:elh, GOC:vw, PMID:10535901]"]
["OS03T0268000-03",0.006525548353427271,0.114942643398311,-0.38570275566530304,"OS03G0268000",null,1092.72663327469,1181.43793891384,906.360725664195,834.298638420333,"no","OS03G0268000","Serine/threonine-protein phosphatase PP1 [Source:UniProtKB/Swiss-Prot;Acc:P48489]","Similar to Protein phosphatase 1, catalytic gsmms subunit. (Os03t0268000-01);Similar to Serine/threonine protein phosphatase. (Os03t0268000-02);Non-protein coding transcript. (Os03t0268000-03)",3,8884203,8889781,"GO:0016787;GO:0006470;GO:0004721;GO:0046872;GO:0004722;GO:0006468;GO:0010161;GO:0005634","hydrolase activity;protein dephosphorylation;phosphoprotein phosphatase activity;metal ion binding;protein serine/threonine phosphatase activity;protein phosphorylation;red light signaling pathway;nucleus","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];The process of introducing a phosphate group on to a protein. [GOC:hb];The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS03T0692400-02",0.006536403695393281,0.11496845463538,0.51404999276137,"OS03G0692400",null,205.889291724083,224.393997423479,314.563248081444,299.904293583488,"no","OS03G0692400","Auxin-regulated protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q6AV45]","Protein of unknown function DUF966 family protein. (Os03t0692400-01);Protein of unknown function DUF966 family protein. (Os03t0692400-02)",3,27705348,27711024]
["OS09T0284400-01",6.5339605381789E-3,0.11496845463538,0.364682730430122,"OS09G0284400",null,516.76173714906,531.134415919795,650.795279520227,698.474169095094,"no","OS09G0284400","GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:Q6EPR4]","GrpE nucleotide exchange factor domain containing protein. (Os09t0284400-01)",9,6246356,6249737,"GO:0030150;GO:0051082;GO:0005759;GO:0051087;GO:0042803;GO:0000774;GO:0005739;GO:0006457;GO:0050790;GO:0001405","protein import into mitochondrial matrix;unfolded protein binding;mitochondrial matrix;chaperone binding;protein homodimerization activity;adenyl-nucleotide exchange factor activity;mitochondrion;protein folding;regulation of catalytic activity;presequence translocase-associated import motor","The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. [ISBN:0716731363];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. [GOC:kd];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Any process that modulates the activity of an enzyme. [GOC:ai, GOC:ebc, GOC:vw];Protein complex located on the matrix side of the mitochondrial inner membrane and associated with the presequence translocase complex; hydrolyzes ATP to provide the force to drive import of proteins into the mitochondrial matrix. [GOC:mcc, PMID:14517234, PMID:14638855]"]
["OS03T0214000-02",0.006545469771795691,0.11499551033231802,-0.46293236658235903,"OS03G0214000",null,1451.36091942969,1375.50646177961,937.040324527442,1113.8805542208,"no","OS03G0214000","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q10Q09]","Similar to Diphosphonucleotide phosphatase 1 precursor. (Os03t0214000-01);Similar to nucleotide pyrophosphatase/phosphodiesterase. (Os03t0214000-02)",3,5973919,5979076,"GO:0003993;GO:0016311;GO:0046872;GO:0016787","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0573800-03",6.5453103550945505E-3,0.11499551033231802,0.7628407156614471,"OS07G0573800",null,542.249727063331,407.908122608218,842.064990890438,770.189880897125,"no","OS07G0573800","Os07g0573800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZL16]","Similar to root border cell-specific protein. (Os07t0573800-01);FMN-binding split barrel domain containing protein. (Os07t0573800-02);FMN-binding split barrel domain containing protein. (Os07t0573800-03);Hypothetical protein. (Os07t0573800-04)",7,23194229,23199780,"GO:0048037;GO:0009507","cofactor binding;chloroplast","Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS01T0701700-01",0.00656104175284976,0.115136672965575,-0.8111966680747621,"OS01G0701700",null,204.779206359791,163.420594305238,93.6317425456239,116.208615967934,"no","OS01G0701700","Os01g0701700 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8J5]","SAM dependent carboxyl methyltransferase family protein. (Os01t0701700-01)",1,29050777,29053445,"GO:0032259;GO:0008168;GO:0016740","methylation;methyltransferase activity;transferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0461400-02",0.0065599389664244,0.115136672965575,-0.518907877669011,"OS04G0461400",null,366.192887867846,372.51524792681,254.942894599502,260.601472428296,"no","OS04G0461400","Os04g0461400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCM7]","Conserved hypothetical protein. (Os04t0461400-01);Hypothetical gene. (Os04t0461400-02)",4,23045683,23056619]
["OS05T0525701-00",0.006567260669901031,0.11516723419920101,-0.501819917691766,"OS05G0525701",null,454.843540400114,464.529946667723,322.625049076966,326.65061894821,"no","OS05G0525701","Os05g0525701 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPN1]","Hypothetical protein. (Os05t0525701-00)",5,26153505,26157740,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0248900-01",0.00657032237526865,0.11516723419920101,0.6264445152155761,"OS09G0248900",null,1618.34534296768,1757.92612356947,2314.313528972,2897.82497885693,"no","OS09G0248900","Os09g0248900 protein [Source:UniProtKB/TrEMBL;Acc:B9G2B3]","Myb/SANT-like domain domain containing protein. (Os09t0248900-01)",9,3719068,3730935]
["OS01T0236700-01",0.00658010139828904,0.11517474476205601,0.313806190103107,"OS01G0236700","NLP3",1298.15281255261,1188.20515189337,1497.98302019285,1592.51685820225,"no","OS01G0236700","Protein NLP3 [Source:UniProtKB/Swiss-Prot;Acc:Q5NB82]","Octicosapeptide/Phox/Bem1p domain containing protein. (Os01t0236700-01);Hypothetical conserved gene. (Os01t0236700-02)",1,7571236,7576792,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0213500-01",6.5820602367946505E-3,0.11517474476205601,-0.30468231496338405,"OS05G0213500",null,1227.18171898909,1249.60693978029,1045.95583155275,959.302984687249,"no","OS05G0213500","Os05g0213500 protein [Source:UniProtKB/TrEMBL;Acc:Q6I5C3]","Rice orthologue of the abscisic acid (ABA) receptor, Positive regulator of the ABA signal transduction pathway, Abiotic stress tolerance (Os05t0213500-01)",5,7034322,7036548]
["OS08T0481400-01",6.5747699438902405E-3,0.11517474476205601,0.6605821538434471,"OS08G0481400","HOX20",178.62419313506,170.943649039575,243.03759616261,309.53140379152,"no","OS08G0481400","Homeobox-leucine zipper protein HOX20 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z248]","Similar to HAHB-7 (Fragment). (Os08t0481400-01)",8,23803892,23805451,"GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS07T0191650-00",0.00659313066214183,0.115302420142963,-0.7681007845696831,"OS07G0191650",null,373.046934509972,498.195847490661,250.75620215397,260.828815592154,"no","OS07G0191650","Os07g0191650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3B7]","Similar to F-box domain containing protein, expressed. (Os07t0191650-00)",7,4947651,4948597]
["OS04T0493000-01",0.00660143206614853,0.11538155176485701,0.45945150641574606,"OS04G0493000",null,333.296031652352,346.884298769324,492.731058707218,442.529788251857,"no","OS04G0493000","Os04g0493000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WC73]","Similar to H0425E08.14 protein. (Os04t0493000-01)",4,24648004,24648863,"GO:0009640;GO:0006355;GO:0000989;GO:0005634;GO:0005622;GO:0008270","photomorphogenesis;regulation of transcription, DNA-templated;transcription factor activity, transcription factor binding;nucleus;intracellular;zinc ion binding","The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS02T0782700-01",0.00662403301480726,0.115710381171179,-0.546603577104653,"OS02G0782700","EREBP1",2563.7011269883,2589.04587566783,1574.82178929133,1952.90340624511,"no","OS02G0782700","Ethylene-responsive transcription factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6K7E6]","AP2/ERF transcription factor, Defense response, Abiotic stress response (Os02t0782700-01);Similar to Transcription factor EREBP1. (Os02t0782700-02)",2,33199818,33202681,"GO:0006952;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","defense response;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0346400-01",0.006633574691300281,0.11581084226777501,0.325235941609306,"OS09G0346400","BIP103",986.781701405031,1023.73778752072,1284.4960405462,1234.42214228367,"no","OS09G0346400","Proton pump-interactor BIP103 [Source:UniProtKB/Swiss-Prot;Acc:Q762B4]","Conserved hypothetical protein. (Os09t0346400-01);Hypothetical conserved gene. (Os09t0346400-02)",9,10834983,10843944,"GO:0005886;GO:0010155;GO:0005783;GO:0016020;GO:0016021;GO:0005515","plasma membrane;regulation of proton transport;endoplasmic reticulum;membrane;integral component of membrane;protein binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:sm];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators]"]
["OS02T0739650-00",0.00664270992213434,0.11590409682527,-0.8310902471457361,"OS02G0739650",null,1363.33549279511,1864.18334308487,886.711886026897,927.490325451323,"no","OS02G0739650","Os02g0739650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPK9]","Hypothetical gene. (Os02t0739650-00)",2,30918850,30920070]
["OS02T0777700-00",0.00665308422062243,0.115955757627028,0.36186444154214403,"OS02G0777700",null,615.397968375814,589.174528214461,744.284803493751,803.693945110035,"no","OS02G0777700","Os02g0777700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQ91]","Similar to XI-I (Myosin-like protein XI-I); motor/ protein binding. (Os02t0777700-00)",2,32907207,32913700,"GO:0016459;GO:0003774;GO:0005524;GO:0000166","myosin complex;motor activity;ATP binding;nucleotide binding","A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes. [GOC:mah, http://www.mrc-lmb.cam.ac.uk/myosin/Review/Reviewframeset.html, ISBN:96235764];Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS06T0568200-01",0.00665326142708106,0.115955757627028,0.338915551045722,"OS06G0568200",null,1904.75770853141,2082.48889235831,2410.25043882914,2632.84100816198,"no","OS06G0568200","Os06g0568200 protein [Source:UniProtKB/TrEMBL;Acc:Q93W07]","Vacuolar ATPase B subunit. (Os06t0568200-01);Similar to Vacuolar ATPase B subunit. (Os06t0568200-02)",6,21963208,21968733,"GO:0005524;GO:0016820;GO:0015991;GO:0046034;GO:0015992;GO:0033180","ATP binding;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;ATP hydrolysis coupled proton transport;ATP metabolic process;proton transport;proton-transporting V-type ATPase, V1 domain","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane. [GOC:mah];The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:mah, GOC:vw];The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. [GOC:mah, ISBN:0716743663, PMID:16449553]"]
["OS10T0510700-00",0.0066587711244561,0.11598561881093701,0.490633274097572,"OS10G0510700",null,262.967511211948,302.623097442674,409.796128033726,384.893458214639,"no","OS10G0510700","Os10g0510700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XWQ9]","Similar to calcium dependent protein kinase1. (Os10t0510700-00)",10,19640816,19646242,"GO:0046777;GO:0009738;GO:0009931;GO:0005516;GO:0004683;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","protein autophosphorylation;abscisic acid-activated signaling pathway;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0417700-01",6.6651218105675996E-3,0.11603008635695801,1.03041221747979,"OS03G0417700",null,230.351385790311,154.399539511568,411.74753816722,374.147701767023,"no","OS03G0417700","Os03g0417700 protein [Source:UniProtKB/TrEMBL;Acc:Q7Y1K4]","Similar to Phytochrome P450. (Os03t0417700-01)",3,17340417,17342284,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0192000-01",0.00668249307026711,0.11604579084181801,1.32891198075264,"OS01G0192000",null,104.999894349368,65.4306326442739,239.376555302598,188.767338710752,"no","OS01G0192000","Zinc finger CCCH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FU27]","CCCH-type zinc finger protein, Negative regulator  for leaf senescence (Os01t0192000-01);Similar to C3H transcription factor. (Os01t0192000-02)",1,4949133,4951123,"GO:0005634;GO:0046872;GO:0003677;GO:0008270;GO:0009867;GO:0010150;","nucleus;metal ion binding;DNA binding;zinc ion binding;jasmonic acid mediated signaling pathway;leaf senescence;","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A series of molecular signals mediated by jasmonic acid. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850];The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:0387987819];"]
["OS01T0198500-01",0.00668497885451376,0.11604579084181801,-1.1799823573234,"OS01G0198500",null,68.2900126015523,55.5838342241646,27.3197418689151,27.3528345939338,"no","OS01G0198500","Os01g0198500 protein [Source:UniProtKB/TrEMBL;Acc:Q94IV1]","Conserved hypothetical protein. (Os01t0198500-01)",1,5352505,5353607]
["OS07T0204400-00",6.6833352285977305E-3,0.11604579084181801,-0.598218886170028,"OS07G0204400",null,855.131167586232,989.587729635713,553.899782969681,664.664285331428,"no","OS07G0204400","Os07g0204400 protein [Source:UniProtKB/TrEMBL;Acc:Q7XB63]","Conserved hypothetical protein. (Os07t0204400-00)",7,5612134,5612909]
["OS08T0103300-02",6.6786988941699805E-3,0.11604579084181801,-0.415442819508458,"OS08G0103300","TULP12",734.840286560244,799.050786754875,604.075878709345,546.019265592673,"no","OS08G0103300","Tubby-like F-box protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q69U54]","Similar to Tubby-like protein 3. (Os08t0103300-01);Similar to Tubby-like F-box protein 12. (Os08t0103300-02)",8,187111,191782,"GO:0035091","phosphatidylinositol binding","Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, ISBN:0198506732, PMID:11395417]"]
["OS10T0172600-01",0.00668501544519508,0.11604579084181801,0.307393318585685,"OS10G0172600",null,841.024566680303,832.910981727089,1067.48643133987,1003.95825898682,"no","OS10G0172600","Os10g0172600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSA7]","Similar to zinc finger (C3HC4-type RING finger) family protein. (Os10t0172600-01)",10,4966210,4969540]
["OS07T0191700-01",6.6897705466652906E-3,0.11606239054044201,0.453800476395156,"OS07G0191700",null,833.749706090594,712.296542280036,1102.54672542407,1014.9855408249,"no","OS07G0191700","Os07g0191700 protein [Source:UniProtKB/TrEMBL;Acc:Q69S66]","Similar to AT.I.24-9 protein (Fragment). (Os07t0191700-01)",7,4949828,4963161,"GO:0006414;GO:0003746","translational elongation;translation elongation factor activity","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732]"]
["OS03T0107600-03",0.006697024527749911,0.11612230043803401,-8.38399147549901,"OS03G0107600",null,118.412181097762,197.299134809813,3.18503943390368e-05,0.945023468871474,"no","OS03G0107600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10SY4]","Similar to H0716A07.6 protein. (Os03t0107600-01);Similar to H0716A07.6 protein. (Os03t0107600-02);Similar to H0716A07.6 protein. (Os03t0107600-03)",3,465197,468002]
["OS02T0696700-01",0.00671144238859642,0.116306289198184,-0.567716402187426,"OS02G0696700",null,1106.9097564968,1376.21456217978,837.154947268898,838.169002914113,"no","OS02G0696700","Os02g0696700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DYF8]","Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein. (Os02t0696700-01)",2,28643011,28645617,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0599900-01",0.00671964442357135,0.11638241294158301,3.20009949217743,"OS12G0599900",null,4.07701567770462,2.05866052682091,28.0584963106694,28.3297215437171,"no","OS12G0599900","Os12g0599900 protein [Source:UniProtKB/TrEMBL;Acc:Q2QML4]","Tetratricopeptide-like helical domain containing protein. (Os12t0599900-01)",12,25236012,25240695]
["OS07T0599500-01",0.00673774236214553,0.11662974767607401,-1.62804661578482,"OS07G0599500",null,1165.00722990409,1920.35953764182,405.580623595906,592.61562124175,"no","OS07G0599500","Early nodulin 75-like protein [Source:UniProtKB/TrEMBL;Acc:Q8H5A4]","Hypothetical protein. (Os07t0599500-01)",7,24470110,24471114,"GO:0007275","multicellular organism development","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS10T0416800-03",0.006752112226284431,0.11681230619334201,-1.04106859430147,"OS10G0416800",null,323.445595272555,397.893877447559,144.374346766057,206.173112409134,"no","OS10G0416800","Chitinase 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XEL9]","Similar to Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2). (Os10t0416800-03)",10,14602523,14603656,"GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0005576;GO:0004568;GO:0008061;GO:0006032","metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;extracellular region;chitinase activity;chitin binding;chitin catabolic process","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. [EC:3.2.1.14, GOC:bf, GOC:kah, GOC:pde, PMID:11468293];Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:0198506732]"]
["OS03T0704700-01",0.006761694797801311,0.11689297919199101,-0.274801691807397,"OS03G0704700",null,1643.03731811496,1753.97876885142,1383.5497846472,1424.30117278412,"no","OS03G0704700","Os03g0704700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1Z3]","Similar to Oxysterol-binding protein, expressed. (Os03t0704700-01)",3,28329953,28339165]
["OS09T0471900-01",0.006768253475734211,0.11689297919199101,0.873387802547244,"OS09G0471900",null,92.8286694555428,96.3941198044868,173.37300365358,173.275529146869,"no","OS09G0471900","Os09g0471900 protein [Source:UniProtKB/TrEMBL;Acc:Q6K4D4]","Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein. (Os09t0471900-01);Hypothetical conserved gene. (Os09t0471900-02)",9,18013221,18020611,"GO:0030488;GO:0003723;GO:0032259;GO:0008168;GO:0016740;GO:0001510;GO:0016428","tRNA methylation;RNA binding;methylation;methyltransferase activity;transferase activity;RNA methylation;tRNA (cytosine-5-)-methyltransferase activity","The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd];Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 5-methylcytosine. [EC:2.1.1.29]"]
["OS11T0305400-00",0.006766542480606499,0.11689297919199101,-1.23944047424865,"OS11G0305400",null,108.040915459172,71.0237881753215,33.8343681665405,42.006138840684,"no","OS11G0305400","O-methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q2R6H4]","Similar to O-methyltransferase family protein. (Os11t0305400-00)",11,11538313,11540897,"GO:0019438;GO:0008757;GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740","aromatic compound biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity","The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0197200-01",6.7891588469931406E-3,0.116896228873633,1.15676266263672,"OS02G0197200",null,39.8679297505346,32.6371966819377,68.2114883845162,93.443448932315,"no","OS02G0197200","MLO-like protein 13 [Source:Projected from Arabidopsis thaliana (AT4G24250) UniProtKB/Swiss-Prot;Acc:Q94KB2]","Mlo-related protein family protein. (Os02t0197200-01)",2,5442081,5447353,"GO:0005886;GO:0006952;GO:0009607;GO:0005516;GO:0016021;GO:0016020","plasma membrane;defense response;response to biotic stimulus;calmodulin binding;integral component of membrane;membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0754400-00",0.006791520895287111,0.116896228873633,-1.018587982118,"OS02G0754400",null,139.637786961383,147.194227667695,56.5908938713241,84.9891646311514,"no","OS02G0754400","Os02g0754400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPL4]","Hypothetical conserved gene. (Os02t0754400-00)",2,31724532,31725002,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0177900-01",0.00679011366261391,0.116896228873633,0.392371961070531,"OS03G0177900","REFA1",1868.00144592523,2147.49785503411,2700.58321520194,2569.95885617614,"no","OS03G0177900","Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:Q10QZ6]","EF-1 alpha. (Os03t0177900-01);Similar to Elongation factor 1-alpha. (Os03t0177900-02);Non-protein coding transcript. (Os03t0177900-03)",3,4110375,4113701,"GO:0006414;GO:0003746;GO:0005525;GO:0003924;GO:0005622;GO:0005737;GO:0006412;GO:0000166","translational elongation;translation elongation factor activity;GTP binding;GTPase activity;intracellular;cytoplasm;translation;nucleotide binding","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS04T0461600-01",0.006789363423461181,0.116896228873633,-1.09377526715385,"OS04G0461600",null,97.8483762649108,77.1997697557842,35.1253824028908,46.8905735896007,"no","OS04G0461600","Os04g0461600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCM6]","Similar to Fw2.2. (Os04t0461600-01)",4,23059610,23060936]
["OS09T0315700-01",0.006795224616377711,0.116896228873633,-0.246232166646445,"OS09G0315700",null,2487.83680985834,2505.91931369789,2084.90901953912,2125.3039150464,"no","OS09G0315700","Os09g0315700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLG1]","Phosphoenolpyruvate carboxylase family protein. (Os09t0315700-01)",9,8692296,8697399,"GO:0005829;GO:0009507;GO:0015977;GO:0008964;GO:0006099;GO:0048366;GO:0003824;GO:0048046","cytosol;chloroplast;carbon fixation;phosphoenolpyruvate carboxylase activity;tricarboxylic acid cycle;leaf development;catalytic activity;apoplast","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates). [GOC:jl, GOC:mah];Catalysis of the reaction: phosphate + oxaloacetate = phosphoenolpyruvate + HCO3-. [EC:4.1.1.31];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS10T0138100-02",6.7915082133277E-3,0.116896228873633,0.41644054417381204,"OS10G0138100",null,415.287602540592,396.559559051686,521.094763723321,562.421343592183,"no","OS10G0138100","Probable aldehyde oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XH05]","Similar to Aldehyde oxidase-2. (Os10t0138100-01);Similar to aldehyde oxidase-2. (Os10t0138100-02)",10,2358853,2368717,"GO:0016491;GO:0055114;GO:0009688;GO:0005829;GO:0051537;GO:0051536;GO:0016614;GO:0050660;GO:0046872;GO:0009055;GO:0005506;GO:0003824;GO:0016903;GO:0004031;GO:0009851;GO:0102797;GO:0102798","oxidoreductase activity;oxidation-reduction process;abscisic acid biosynthetic process;cytosol;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;metal ion binding;electron carrier activity;iron ion binding;catalytic activity;oxidoreductase activity, acting on the aldehyde or oxo group of donors;aldehyde oxidase activity;auxin biosynthetic process;","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid. [ISBN:0387969845];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Catalysis of the reaction: an aldehyde + H2O + O2 = a carboxylic acid + hydrogen peroxide. [EC:1.2.3.1];The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. [GOC:lm, GOC:lr, ISBN:0122146743];"]
["OS10T0553300-01",0.006777552314724161,0.116896228873633,0.54794645902057,"OS10G0553300","TPP2",622.76414476938,768.909706767611,991.316347814918,1043.31526236862,"no","OS10G0553300","Probable trehalose-phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWQ2]","Similar to Trehalose-6-phosphate phosphatase. (Os10t0553300-01)",10,21707054,21710973,"GO:0005992;GO:0004805;GO:0016311;GO:0016787;GO:0003824;GO:0016020;GO:0016021","trehalose biosynthetic process;trehalose-phosphatase activity;dephosphorylation;hydrolase activity;catalytic activity;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];Catalysis of the reaction: trehalose 6-phosphate + H2O = trehalose + phosphate. [EC:3.1.3.12];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0519100-01",6.8107500587291404E-3,0.11709737523595501,0.539396457978753,"OS07G0519100",null,639.606981138936,521.16177453227,869.104708490288,817.915259821023,"no","OS07G0519100","Os07g0519100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7H0]","Similar to taxane 10-beta-hydroxylase. (Os07t0519100-01)",7,20045846,20049071,"GO:0016125;GO:0010268;GO:0007275;GO:0004497;GO:0016132;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;monooxygenase activity;brassinosteroid biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0369050-01",0.0068176069468867,0.117143873995145,-0.38302035012572705,"OS09G0369050",null,2844.04205988858,2476.56861376556,1984.58410576333,2095.42250728528,"no","OS09G0369050","Os09g0369050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMM7]","Similar to DRE binding factor 2. (Os09t0369050-01)",9,12217436,12218334]
["OS11T0156300-01",0.00682112306354288,0.117143873995145,-0.9842210825322051,"OS11G0156300",null,103.963899781468,84.8700751336484,46.6109568935863,48.8443474891674,"no","OS11G0156300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53ND9]","Protein of unknown function DUF623, plant domain containing protein. (Os11t0156300-01)",11,2659043,2660408]
["OS04T0430200-02",0.00682728467261228,0.11716760457536701,0.9021193727282371,"OS04G0430200",null,59.790091463588396,75.3691305441885,114.863403545038,137.723409958851,"no","OS04G0430200","Os04g0430200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JD56]","PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0430200-01);Similar to phospholipase C. (Os04t0430200-02)",4,21332222,21335533,"GO:0008081;GO:0006629","phosphoric diester hydrolase activity;lipid metabolic process","Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma]"]
["OS06T0695500-01",0.00683017490667483,0.11716760457536701,0.369382859941056,"OS06G0695500",null,697.380728355612,663.50885131698,823.66471728783,934.332605752744,"no","OS06G0695500","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5Z8H5]","Similar to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a). (Os06t0695500-01)",6,29051012,29054304,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0221100-01",6.8354717064659405E-3,0.117192666428702,0.9114408621723361,"OS01G0221100","GH3.3",58.1016782360649,51.4665131705228,100.497621874938,105.591719725585,"no","OS01G0221100","Jasmonic acid-amido synthetase JAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5NAZ7]","GH3 auxin-responsive promoter family protein. (Os01t0221100-01);GH3 auxin-responsive promoter family protein. (Os01t0221100-02)",1,6626040,6630462,"GO:0009416;GO:0009733;GO:0016874","response to light stimulus;response to auxin;ligase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah]"]
["OS03T0127900-01",0.00685040767253303,0.11727221423211201,-0.32455035186886305,"OS03G0127900",null,991.734063601648,1095.20740026873,845.93629286962,820.585037818013,"no","OS03G0127900","Os03g0127900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DVI9]","Cation/H+ exchanger domain containing protein. (Os03t0127900-01)",3,1567984,1571080,"GO:0022890;GO:0016020;GO:0098655;GO:1902600;GO:0015299;GO:0006812;GO:0055085;GO:0016021","inorganic cation transmembrane transporter activity;membrane;cation transmembrane transport;hydrogen ion transmembrane transport;solute:proton antiporter activity;cation transport;transmembrane transport;integral component of membrane","Enables the transfer of inorganic cations from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). [GOC:ai];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0581300-01",0.006851445540596111,0.11727221423211201,0.30658494868674,"OS06G0581300",null,1239.0958187675,1124.13976193046,1444.94306101423,1477.85144612277,"no","OS06G0581300","Os06g0581300 protein [Source:UniProtKB/TrEMBL;Acc:Q5VPL8]","Hypothetical conserved gene. (Os06t0581300-01);Protein of unknown function DUF1475 family protein. (Os06t0581300-02)",6,22699043,22704976,"GO:0016020;GO:0016021;GO:0005773","membrane;integral component of membrane;vacuole","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS07T0419500-01",0.006851626813443291,0.11727221423211201,-0.28416108494567405,"OS07G0419500",null,1142.58364367672,1174.46583055133,947.409619811305,955.395436888115,"no","OS07G0419500","Os07g0419500 protein [Source:UniProtKB/TrEMBL;Acc:B7F986]","Similar to UDP-glucose:sterol glucosyltransferase. (Os07t0419500-01)",7,13399139,13411985,"GO:0043231;GO:0080044;GO:0080043;GO:0030259;GO:0005975;GO:0016758;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;lipid glycosylation;carbohydrate metabolic process;transferase activity, transferring hexosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Covalent attachment of a glycosyl residue to a lipid molecule. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0697300-01",0.0068610383043548,0.11736754886598401,-0.312913708136005,"OS02G0697300",null,4619.25876283933,4978.87048411638,3675.48098643582,4051.15018075155,"no","OS02G0697300","Os02g0697300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YUH7]","ENTH/VHS domain containing protein. (Os02t0697300-01)",2,28673054,28676757,"GO:0016310;GO:0016301;GO:0006886;GO:0005622","phosphorylation;kinase activity;intracellular protein transport;intracellular","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS01T0211600-01",0.006871272168434001,0.11747683675993,-0.79898768594425,"OS01G0211600",null,599.229607153011,671.063511053636,311.111421754323,418.992507423095,"no","OS01G0211600","Os01g0211600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JPP0]","Cytochrome P450 family protein. (Os01t0211600-01)",1,6076731,6078239,"GO:0016126;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0000249","sterol biosynthetic process;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;C-22 sterol desaturase activity","The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the formation of the C-22(23) double bond in the sterol side chain. An example reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+. [MetaCyc:RXN3O-227]"]
["OS03T0765400-02",0.00687771111595571,0.11752115772633,0.5907781478318961,"OS03G0765400",null,146.56086070584,141.837488438459,224.096353271653,210.248533593281,"no","OS03G0765400","Os03g0765400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W3F0]","Similar to nucleoporin p58/p45. (Os03t0765400-01);Conserved hypothetical protein. (Os03t0765400-02)",3,31690975,31696827,"GO:0005487;GO:0006606;GO:0005643;GO:0008139;GO:0006913","nucleocytoplasmic transporter activity;protein import into nucleus;nuclear pore;nuclear localization sequence binding;nucleocytoplasmic transport","Enables the directed movement of substances between the nucleus and the cytoplasm of a cell. [GOC:ai];The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl];Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. [ISBN:0198547684];Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus. [GOC:ai];The directed movement of molecules between the nucleus and the cytoplasm. [GOC:go_curators]"]
["OS05T0484800-01",0.006881835258265151,0.117525897602301,-1.62154481724715,"OS05G0484800",null,44.8471724547508,45.2905315900601,10.7327557342166,18.5608520458836,"no","OS05G0484800","Os05g0484800 protein [Source:UniProtKB/TrEMBL;Acc:Q75J78]","Protein of unknown function DUF567 family protein. (Os05t0484800-01)",5,23825696,23826622]
["OS03T0214200-01",6.8880549302323905E-3,0.117566399010313,-0.36361608814663304,"OS03G0214200","MODD",875.255524263914,952.66837897253,750.464201706618,670.223963255384,"no","OS03G0214200","Ninja-family protein Os03g0214200 [Source:UniProtKB/Swiss-Prot;Acc:Q10Q07]","Mediator of OsbZIP46 deactivation and degradation, Negative regulation of ABA signaling and drought tolerance (Os03t0214200-01);Similar to Ninja-family protein 1. (Os03t0214200-02)",3,5983462,5988740,"GO:0007165;GO:0005634","signal transduction;nucleus","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS09T0526200-01",0.006892015437833371,0.11756831694957301,0.976939510588506,"OS09G0526200",null,54.0204577295862,42.2025407998287,100.497621874938,88.8967124302848,"no","OS09G0526200","Os09g0526200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPK7]","Similar to Homeobox-leucine zipper protein ROC6. (Os09t0526200-01)",9,20568029,20574897,"GO:0008289;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","lipid binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a lipid. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0689900-02",0.00692332792304826,0.11788759485508801,0.316476835656878,"OS01G0689900",null,782.609370329595,768.170814677561,934.293305071688,996.87116976571,"no","OS01G0689900","(Rice Genome Annotation Project) OsWAK10a - OsWAK receptor-like cytoplasmic kinase [Source:UniProtKB/TrEMBL;Acc:Q5N7Q7]","Hypothetical conserved gene. (Os01t0689900-01);Protein kinase, core domain containing protein. (Os01t0689900-02);Hypothetical conserved gene. (Os01t0689900-03);Serine/threonine protein kinase-related domain containing protein. (Os01t0689900-04)",1,28482950,28496176,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0007166;GO:0005886;GO:0030247","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;cell surface receptor signaling pathway;plasma membrane;polysaccharide binding","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah]"]
["OS02T0529700-01",0.00692124549996629,0.11788759485508801,-0.284684672655913,"OS02G0529700",null,2067.53111625961,2289.21178627992,1808.96236306948,1767.57944903026,"no","OS02G0529700","Os02g0529700 protein [Source:UniProtKB/TrEMBL;Acc:Q6H764]","Similar to Acidic ribosomal protein P2a-4 (Fragment). (Os02t0529700-01)",2,19455171,19458350,"GO:0002181;GO:0003735;GO:0022625;GO:0006414;GO:0030529;GO:0005840;GO:0005622","cytoplasmic translation;structural constituent of ribosome;cytosolic large ribosomal subunit;translational elongation;intracellular ribonucleoprotein complex;ribosome;intracellular","The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. [GOC:hjd];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS03T0102700-01",0.00692616629892912,0.11788759485508801,0.6061533328585691,"OS03G0102700",null,3307.95022714696,3890.03733738504,5003.1652825939,5953.57651065498,"no","OS03G0102700","Os03g0102700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRV2]","Similar to Expansin-B7. (Os03t0102700-01)",3,189695,191268,"GO:0019953;GO:0005618;GO:0005576;GO:0016020;GO:0071555","sexual reproduction;cell wall;extracellular region;membrane;cell wall organization","A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. [GOC:jl, http://en.wikipedia.org/wiki/Sexual_reproduction, ISBN:0387520546];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS06T0194000-02",0.00692198821520509,0.11788759485508801,-0.9449364836899161,"OS06G0194000",null,1084.90586305979,1533.88373899865,717.544984968859,642.791612957445,"no","OS06G0194000","EREBP transcription factor [Source:UniProtKB/TrEMBL;Acc:Q69Y47]","AP2/ERF transcription factor, Drought resistance, Control of lignin biosynthesis (Os06t0194000-01);Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3 homolog) (EREBP-5) (NtERF5). (Os06t0194000-02)",6,4731330,4733911,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0277100-01",0.006942504370427691,0.11803416445481701,-0.37667406561016,"OS03G0277100",null,2375.88088618237,2587.73628221389,2027.5151287002,1795.5182137018,"no","OS03G0277100","Os03g0277100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DT06]","HSP20-like chaperone domain containing protein. (Os03t0277100-01)",3,9404128,9405129]
["OS07T0167700-01",0.0069410612993827,0.11803416445481701,-0.6676406766939671,"OS07G0167700",null,229.332131870885,189.396768467524,127.817363743853,135.787286019885,"no","OS07G0167700","Os07g0167700 protein [Source:UniProtKB/TrEMBL;Acc:Q69LE9]","Conserved hypothetical protein. (Os07t0167700-01)",7,3633980,3635156,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0630300-01",0.00694661637685769,0.11803838906883,0.6801635012812971,"OS01G0630300",null,137.599279122531,145.135567140874,200.995243749875,252.036833044104,"no","OS01G0630300","Os01g0630300 protein [Source:UniProtKB/TrEMBL;Acc:Q8S2I3]","Helix-loop-helix DNA-binding domain containing protein. (Os01t0630300-01)",1,25190735,25191743,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS03T0405900-01",0.00695229821328915,0.11806926904525301,0.5044479551789111,"OS03G0405900",null,2504.73010322504,2049.31895535823,3208.40699623719,3251.87789795863,"no","OS03G0405900","Probable nucleoredoxin 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y0F2]","Hypothetical conserved gene. (Os03t0405900-01)",3,16628549,16632054,"GO:0047134;GO:0004791;GO:0005737;GO:0016853;GO:0005623;GO:0045454;GO:0055114;GO:0016491;GO:0003677;GO:0098869;GO:0005634;GO:0006355","protein-disulfide reductase activity;thioredoxin-disulfide reductase activity;cytoplasm;isomerase activity;cell;cell redox homeostasis;oxidation-reduction process;oxidoreductase activity;DNA binding;cellular oxidant detoxification;nucleus;regulation of transcription, DNA-templated","Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. [EC:1.8.1.8, MetaCyc:1.6.4.4-RXN];Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS06T0340600-02",0.006963890675704271,0.11820043773562101,-0.395399817895809,"OS06G0340600",null,4785.46451130722,5065.39391342932,3999.32239447594,3490.07494398952,"no","OS06G0340600","Os06g0340600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z885]","Similar to phosphatidylinositol 3- and 4-kinase family protein. (Os06t0340600-01);Similar to phosphatidylinositol 3- and 4-kinase family protein. (Os06t0340600-02);Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein. (Os06t0340600-03)",6,13601989,13604917,"GO:0016301;GO:0016310","kinase activity;phosphorylation","Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732]"]
["OS01T0510200-01",0.006993609191995611,0.118507347772518,1.06620821213157,"OS01G0510200",null,34.6546332604892,38.0852197461869,68.2993546722877,84.012277681368,"no","OS01G0510200","Os01g0510200 protein [Source:UniProtKB/TrEMBL;Acc:Q942H1]","Conserved hypothetical protein. (Os01t0510200-01)",1,17911538,17912144]
["OS03T0224200-03",6.9899089422551805E-3,0.118507347772518,-0.43247290704899205,"OS03G0224200","RR21",1507.85207018224,1763.23048943564,1250.25041602834,1173.59092312237,"no","OS03G0224200","Two-component response regulator ORR21 [Source:UniProtKB/Swiss-Prot;Acc:Q8H7S7]","B-type response regulator, Cytokinin signaling (Os03t0224200-01);B-type response regulator, Cytokinin signaling (Os03t0224200-02);Similar to response regulator 8. (Os03t0224200-03)",3,6512771,6518511,"GO:0005634;GO:0006355;GO:0006351;GO:0003677;GO:0009736;GO:0000160;GO:0003700;GO:0007165","nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding;cytokinin-activated signaling pathway;phosphorelay signal transduction system;transcription factor activity, sequence-specific DNA binding;signal transduction","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]"]
["OS08T0398800-02",0.00699080884070869,0.118507347772518,-0.588232966324546,"OS08G0398800",null,234.428401468015,216.159355316196,159.039925879756,140.671720768802,"no","OS08G0398800","Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:Projected from Arabidopsis thaliana (AT4G29820) UniProtKB/Swiss-Prot;Acc:Q94AF0]","Cleavage and polyadenylation specificity factor, 25 kDa subunit domain containing protein. (Os08t0398800-02)",8,19031551,19033254,"GO:0005849;GO:0006378;GO:0003729;GO:0006813;GO:0006298;GO:0030983;GO:1902600;GO:0015299;GO:0006812;GO:0016787;GO:0055085;GO:0016021;GO:0005524;GO:0016020","mRNA cleavage factor complex;mRNA polyadenylation;mRNA binding;potassium ion transport;mismatch repair;mismatched DNA binding;hydrogen ion transmembrane transport;solute:proton antiporter activity;cation transport;hydrolase activity;transmembrane transport;integral component of membrane;ATP binding;membrane","Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules. [GOC:mah, PMID:10357856];The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. [ISBN:0198506732];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:0198506732, PMID:11687886];Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. [GOC:mah];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). [GOC:ai];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0494900-01",0.00700142098690711,0.118557499205933,0.459438363745418,"OS07G0494900",null,866.365831512231,1036.53557525433,1284.02786783901,1332.47379950449,"no","OS07G0494900","Os07g0494900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNG9]","Conserved hypothetical protein. (Os07t0494900-01)",7,18503251,18504391,"GO:0005777;GO:0016020;GO:0016021","peroxisome;membrane;integral component of membrane","A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0495600-01",0.007007332859791411,0.118557499205933,0.348483784416516,"OS10G0495600",null,657.418778029869,672.152662007028,893.745841140222,799.093524922779,"no","OS10G0495600","DNA-directed RNA polymerase I subunit 2 [Source:Projected from Arabidopsis thaliana (AT1G29940) UniProtKB/Swiss-Prot;Acc:F4I366]","Similar to DNA-directed RNA polymerase. (Os10t0495600-01)",10,18857871,18869428,"GO:0005736;GO:0006360;GO:0001054;GO:0032549;GO:0003899;GO:0016779;GO:0005634;GO:0006351;GO:0003677;GO:0016740;GO:0009561;GO:0005829","DNA-directed RNA polymerase I complex;transcription from RNA polymerase I promoter;RNA polymerase I activity;ribonucleoside binding;DNA-directed 5'-3' RNA polymerase activity;nucleotidyltransferase activity;nucleus;transcription, DNA-templated;DNA binding;transferase activity;megagametogenesis;cytosol","RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose. [GOC:mah];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. [GOC:jl, GOC:mtg_plant];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS11T0106900-01",0.007008210381183421,0.118557499205933,0.973605216904296,"OS11G0106900",null,56.3903395634309,45.7055850283645,93.8180500369382,106.67197991814,"no","OS11G0106900","LOB domain protein 12, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QYU3]","Lateral organ boundaries, LOB domain containing protein. (Os11t0106900-01)",11,314530,315329]
["OS01T0860800-01",0.00701701543820578,0.11857514140932701,-0.783620072963747,"OS01G0860800",null,643.041600073243,721.060204086125,338.709044599304,453.70768557344,"no","OS01G0860800","Os01g0860800 protein [Source:UniProtKB/TrEMBL;Acc:Q5N7B6]","Glycoside hydrolase, family 17 protein. (Os01t0860800-01);Glycoside hydrolase, family 17 protein. (Os01t0860800-02)",1,37269811,37274701,"GO:0030247;GO:0004553;GO:0046658;GO:0005975;GO:0016787;GO:0005634;GO:0005737","polysaccharide binding;hydrolase activity, hydrolyzing O-glycosyl compounds;anchored component of plasma membrane;carbohydrate metabolic process;hydrolase activity;nucleus;cytoplasm","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS02T0123600-02",0.007013424385482331,0.11857514140932701,0.5048345525251351,"OS02G0123600",null,691.454983767218,660.369821699652,986.44466757297,931.74149820633,"no","OS02G0123600","CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Source:UniProtKB/TrEMBL;Acc:Q6Z717]","Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1). (Os02t0123600-01);Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1). (Os02t0123600-02)",2,1231098,1234484,"GO:0008654;GO:0005794;GO:0016780;GO:0006629;GO:0016020;GO:0016021;GO:0016740;GO:0003881;GO:0006661;GO:0016491;GO:0055114","phospholipid biosynthetic process;Golgi apparatus;phosphotransferase activity, for other substituted phosphate groups;lipid metabolic process;membrane;integral component of membrane;transferase activity;CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity;phosphatidylinositol biosynthetic process;oxidoreductase activity;oxidation-reduction process","The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor). [GOC:jl, http://www.chem.qmul.ac.uk/iubmb/enzyme/EC2/intro.html];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: myo-inositol + CDP-diacylglycerol = 1-phosphatidyl-1D-myo-inositol + CMP + H(+). [EC:2.7.8.11, RHEA:11583];The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS01T0370000-01",7.0256553347131205E-3,0.118581665189028,-0.433935068558216,"OS01G0370000","OPR9",547.87340428826,560.816348364072,442.857964597612,377.838498285928,"no","OS01G0370000","Putative 12-oxophytodienoate reductase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZC83]","NADH:flavin oxidoreductase/NADH oxidase, N-terminal domain containing protein. (Os01t0370000-01)",1,15192860,15195695,"GO:0055114;GO:0005622;GO:0006631;GO:0006629;GO:0031408;GO:0006633;GO:0010181;GO:0016491;GO:0003824","oxidation-reduction process;intracellular;fatty acid metabolic process;lipid metabolic process;oxylipin biosynthetic process;fatty acid biosynthetic process;FMN binding;oxidoreductase activity;catalytic activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS04T0140666-01",0.007029045419525061,0.118581665189028,-0.562494189073498,"OS04G0140666",null,285.943874978268,327.076903776198,195.603347070879,219.49171986491,"no","OS04G0140666","Os04g0140666 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W6Z5]","Similar to OSIGBa0124C14.6 protein. (Os04t0140666-01)",4,2755176,2758796,"GO:0030246;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","carbohydrate binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0677650-01",0.007024749726611151,0.118581665189028,-0.6346086371842391,"OS04G0677650",null,1969.19857233133,2499.21387956059,1394.28254038142,1483.89127672091,"no","OS04G0677650","Os04g0677650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WGH0]","Hypothetical gene. (Os04t0677650-01)",4,34613751,34614333]
["OS01T0728400-01",0.007063974650390561,0.11903946691601301,-0.266066641510988,"OS01G0728400",null,1535.264866277,1573.13214592503,1284.69967108932,1300.19256970976,"no","OS01G0728400","Os01g0728400 protein [Source:UniProtKB/TrEMBL;Acc:B7EAF7]","Conserved hypothetical protein. (Os01t0728400-01)",1,30381185,30383228,"GO:0006470;GO:0004722;GO:0003824","protein dephosphorylation;protein serine/threonine phosphatase activity;catalytic activity","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0295300-01",0.00706290520188565,0.11903946691601301,0.322367024608584,"OS08G0295300",null,924.002401984381,907.15647447119,1151.31685155108,1138.32824632171,"no","OS08G0295300","Os08g0295300 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z0N5]","Similar to Threonyl-tRNA synthetase, cytoplasmic (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS). (Os08t0295300-01);Similar to Threonyl-tRNA synthetase (Fragment). (Os08t0295300-02)",8,11887897,11897477,"GO:0006435;GO:0004829;GO:0006418;GO:0004812;GO:0005737;GO:0000166;GO:0005524;GO:0016876;GO:0043039;GO:0016874","threonyl-tRNA aminoacylation;threonine-tRNA ligase activity;tRNA aminoacylation for protein translation;aminoacyl-tRNA ligase activity;cytoplasm;nucleotide binding;ATP binding;ligase activity, forming aminoacyl-tRNA and related compounds;tRNA aminoacylation;ligase activity","The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr). [EC:6.1.1.3];The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound. [EC:6.1.1, GOC:mah];The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. [GOC:ma, GOC:mah, MetaCyc:Aminoacyl-tRNAs];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah]"]
["OS02T0317800-01",0.0070691372485837,0.119060794497646,-0.26150336882692204,"OS02G0317800",null,2735.6775197398,2900.65268229066,2277.29562578742,2424.63340936227,"no","OS02G0317800","Os02g0317800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z841]","Similar to pollen Ole e 1 allergen and extensin family protein. (Os02t0317800-01)",2,12630108,12633482]
["OS02T0491400-01",0.00707504990426846,0.11909472433895901,0.28658882846307104,"OS02G0491400",null,3268.74731959968,3362.82197056196,3824.76386164811,4264.11153580432,"no","OS02G0491400","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:Q6K5Q1]","Similar to Peptidylprolyl isomerase. (Os02t0491400-01)",2,17156517,17160895,"GO:0061077;GO:0005528;GO:0003755;GO:0005737;GO:0000413;GO:0016853;GO:0016020;GO:0016021","chaperone-mediated protein folding;FK506 binding;peptidyl-prolyl cis-trans isomerase activity;cytoplasm;protein peptidyl-prolyl isomerization;isomerase activity;membrane;integral component of membrane","The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506. [GOC:jl];Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). [EC:5.2.1.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0750000-02",0.0070799443533942,0.119094807444115,-0.43902043044210803,"OS01G0750000",null,517.840415236439,586.127217813258,427.183897992101,387.141578983235,"no","OS01G0750000","GTP-binding protein GTP1 [Source:UniProtKB/TrEMBL;Acc:Q94J09]","Similar to ras-related protein RIC2. (Os01t0750000-01);Similar to Ras-related protein RIC2. (Os01t0750000-02)",1,31403796,31407261,"GO:0005768;GO:0005525;GO:0003924","endosome;GTP binding;GTPase activity","A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS04T0682800-01",0.007082851044971081,0.119094807444115,0.60018629002521,"OS04G0682800",null,258.860214669138,214.946342449587,355.226428304289,363.022758590096,"no","OS04G0682800","Os04g0682800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WGH1]","Potassium efflux antiporter, Chloroplast development, Drought tolerance (Os04t0682800-01);Similar to H0124B04.17 protein. (Os04t0682800-02);Non-protein coding transcript. (Os04t0682800-03);Similar to H0124B04.17 protein. (Os04t0682800-04)",4,34860402,34869589,"GO:0016020;GO:0016021;GO:0015386;GO:0009507;GO:0005849;GO:0006378;GO:0003729;GO:0071805;GO:0006813;GO:0098655;GO:0008324;GO:0006298;GO:0030983;GO:1902600;GO:0015299;GO:0006812;GO:0055085;GO:0005524","membrane;integral component of membrane;potassium:proton antiporter activity;chloroplast;mRNA cleavage factor complex;mRNA polyadenylation;mRNA binding;potassium ion transmembrane transport;potassium ion transport;cation transmembrane transport;cation transmembrane transporter activity;mismatch repair;mismatched DNA binding;hydrogen ion transmembrane transport;solute:proton antiporter activity;cation transport;transmembrane transport;ATP binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in). [TC:2.A.37.-.-];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules. [GOC:mah, PMID:10357856];The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. [ISBN:0198506732];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Enables the transfer of cation from one side of the membrane to the other. [GOC:dgf, GOC:mtg_transport, ISBN:0815340729];A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:0198506732, PMID:11687886];Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. [GOC:mah];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). [GOC:ai];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS11T0204800-01",0.007091805714701141,0.11917978448600101,0.9102931376641211,"OS11G0204800",null,72.3670282792569,52.4958434339333,124.166643754445,110.504050577497,"no","OS11G0204800","Os11g0204800 protein [Source:UniProtKB/TrEMBL;Acc:Q0IU00]","Similar to Wali7 protein (Fragment). (Os11t0204800-01)",11,5282088,5284666]
["OS01T0327000-01",0.00710883869296907,0.11933474711406102,-0.5734798056454541,"OS01G0327000",null,712.479023542036,582.263036984579,413.663981703863,456.394876825895,"no","OS01G0327000","Os01g0327000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V2A4]","Similar to Class III peroxidase 14. (Os01t0327000-01)",1,12551333,12557268,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0016020;GO:0016021","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0329200-01",0.00710813208017261,0.11933474711406102,-0.484311540659127,"OS06G0329200",null,372.215047803192,378.889943085373,271.137596881574,265.78087660461,"no","OS06G0329200","Os06g0329200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WW13]","Conserved hypothetical protein. (Os06t0329200-01);Hypothetical gene. (Os06t0329200-02)",6,12991051,13000888,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0775300-01",7.1153664968522405E-3,0.11937873542659501,0.26967056894345703,"OS01G0775300",null,1184.37305437319,1210.4923897707,1478.41719209101,1408.67098158759,"no","OS01G0775300","Os01g0775300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8S3]","MATH domain containing protein. (Os01t0775300-01)",1,32773565,32783571]
["OS04T0626450-01",0.00712635224008449,0.119497427902888,-1.25544058402482,"OS04G0626450",null,53.00120381016,65.8771368582692,22.4412165351802,27.3528345939338,"no","OS04G0626450","Os04g0626450 protein [Source:UniProtKB/TrEMBL;Acc:C7J1X6]","NB-ARC domain containing protein. (Os04t0626450-01)",4,31855518,31858459,"GO:0005886;GO:0007165;GO:0043531","plasma membrane;signal transduction;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS03T0115400-01",7.1423292204693505E-3,0.11963401444286201,-0.298893754138773,"OS03G0115400",null,981.541524407387,966.541117342418,794.223924332031,789.324655424946,"no","OS03G0115400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10SP2]","WD40 repeat-like domain containing protein. (Os03t0115400-01)",3,870844,875516]
["OS03T0608000-01",0.00714098333688896,0.11963401444286201,-1.12598569377082,"OS03G0608000",null,69.3092665209785,92.639723706941,33.1739722693969,41.0292518909007,"no","OS03G0608000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q75HK7]","Hypothetical protein. (Os03t0608000-01)",3,22863494,22864070]
["OS02T0522300-02",0.007152530051463121,0.119674691476466,-0.6581940524834491,"OS02G0522300",null,493.124327994416,466.174615483526,343.11889744531,264.761044605972,"no","OS02G0522300","Os02g0522300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJQ1]","Conserved hypothetical protein. (Os02t0522300-01);Conserved hypothetical protein. (Os02t0522300-02);Similar to cDNA clone:001-036-H04, full insert sequence. (Os02t0522300-03)",2,19044957,19050756,"GO:0015074;GO:0050662;GO:0003676;GO:0008270;GO:0003824;","DNA integration;coenzyme binding;nucleic acid binding;zinc ion binding;catalytic activity;","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];"]
["OS07T0630900-02",0.007152591864232341,0.119674691476466,-0.331477788440924,"OS07G0630900","CSLA7",1611.13758907476,1712.91682234617,1289.23842626407,1352.4607873844,"no","OS07G0630900","Probable mannan synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q7XIF5]","Similar to cDNA clone:J013000F18, full insert sequence. (Os07t0630900-01);CSLA7 (Fragment). (Os07t0630900-02)",7,26158339,26163360,"GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0071555;GO:0016740","transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0495300-07",0.00717092075195815,0.11981498609966901,-0.33710619568487604,"OS05G0495300",null,1020.91704891861,1117.12186399211,820.772163801677,871.758433756853,"no","OS05G0495300","Os05g0495300 protein [Source:UniProtKB/TrEMBL;Acc:Q65X72]","Conserved hypothetical protein. (Os05t0495300-01);Hypothetical conserved gene. (Os05t0495300-02);Conserved hypothetical protein. (Os05t0495300-06);Non-protein coding transcript. (Os05t0495300-07)",5,24324906,24329940,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0642650-01",0.007167408902089271,0.11981498609966901,-1.30556978140972,"OS06G0642650",null,50.9626959713077,57.6424947509855,18.5383962681924,25.3990606943671,"no","OS06G0642650","Os06g0642650 protein [Source:UniProtKB/TrEMBL;Acc:Q67WV8]","Hypothetical conserved gene. (Os06t0642650-01)",6,26162546,26164599]
["OS11T0210500-01",7.1727418688234505E-3,0.11981498609966901,-0.8466731855915091,"OS11G0210500","ADH2",3083.88100174478,2267.97174918639,1399.01282786699,1576.96801009644,"no","OS11G0210500","Alcohol dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0ITW7]","Similar to Alcohol dehydrogenase. (Os11t0210500-01);Similar to Alcohol dehydrogenase. (Os11t0210500-02)",11,5745005,5748092,"GO:0055114;GO:0004022;GO:0005737;GO:0046872;GO:0016491;GO:0008270","oxidation-reduction process;alcohol dehydrogenase (NAD) activity;cytoplasm;metal ion binding;oxidoreductase activity;zinc ion binding","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+. [EC:1.1.1.1];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0923700-02",0.007194342136112791,0.119869982878573,0.335987732644064,"OS01G0923700",null,1062.69835497846,1072.52153137381,1367.38249242976,1327.78023083435,"no","OS01G0923700","Os01g0923700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KEB6]","Similar to Histidine kinase. (Os01t0923700-01);Similar to Histidine kinase. (Os01t0923700-02);Similar to Histidine kinase. (Os01t0923700-03);Histidine kinase, Abscisic acid (ABA)-induced antioxidant defense (Os01t0923700-04)",1,40403818,40409611,"GO:0009736;GO:0000160;GO:0004673;GO:0018106;GO:0005886;GO:0016310;GO:0016301;GO:0023014;GO:0016772;GO:0000155;GO:0005622;GO:0007165;GO:0016020;GO:0016021;GO:0016740;GO:0004871","cytokinin-activated signaling pathway;phosphorelay signal transduction system;protein histidine kinase activity;peptidyl-histidine phosphorylation;plasma membrane;phosphorylation;kinase activity;signal transduction by protein phosphorylation;transferase activity, transferring phosphorus-containing groups;phosphorelay sensor kinase activity;intracellular;signal transduction;membrane;integral component of membrane;transferase activity;signal transducer activity","A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine. [EC:2.7.13.3, GOC:mah];The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine). [RESID:AA0035, RESID:AA0036];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators]"]
["OS03T0275500-02",0.007188132608366241,0.119869982878573,-0.287477624374447,"OS03G0275500",null,5605.76654730097,6232.12250556361,4753.77465572651,4945.40217694563,"no","OS03G0275500","Clathrin assembly protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NB4]","Epsin-like, N-terminal domain containing protein. (Os03t0275500-01);Similar to predicted protein. (Os03t0275500-02)",3,9313767,9316626,"GO:0030136;GO:0048268;GO:0030276;GO:0005545;GO:0005543","clathrin-coated vesicle;clathrin coat assembly;clathrin binding;1-phosphatidylinositol binding;phospholipid binding","A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. [GOC:mah, PMID:11252894];The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. [GOC:jid, PMID:11460887, PMID:11977118, PMID:9531549];Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. [GOC:jl, GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [ISBN:0198506732];Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. [ISBN:0198506732]"]
["OS03T0422800-01",7.1952526551754305E-3,0.119869982878573,-1.05590147512364,"OS03G0422800",null,81.5403135540923,119.402310555613,48.7852533373483,47.8674605393841,"no","OS03G0422800","Os03g0422800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KHG5]","Similar to D-mannose binding lectin family protein, expressed. (Os03t0422800-01)",3,17599288,17603528,"GO:0006468;GO:0004674;GO:0005886;GO:0030246;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;carbohydrate binding;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0475600-01",0.00718969307582559,0.119869982878573,0.416310785005084,"OS04G0475600","DAO",368.969918832268,330.415014554756,468.338432038544,464.998188096874,"no","OS04G0475600","2-oxoglutarate-dependent dioxygenase DAO [Source:UniProtKB/Swiss-Prot;Acc:Q7XKU5]","2OG-Fe(II) oxygenase domain containing protein. (Os04t0475600-01)",4,23795593,23797531,"GO:0051213;GO:0055114;GO:0046872;GO:0016491;GO:0009852","dioxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;auxin catabolic process","Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of auxins, a group of plant hormones that regulate aspects of plant growth. [GOC:lm, GOC:lr, ISBN:0198547684]"]
["OS11T0441500-01",0.00719565162998501,0.119869982878573,0.71482653642116,"OS11G0441500",null,144.734056558514,146.164897404285,205.87376908361,271.574572039771,"no","OS11G0441500","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q0ISY7]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os11t0441500-01)",11,14509845,14516320,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0647800-01",0.007204300777452771,0.11994866340748601,-0.467207398315081,"OS04G0647800",null,2349.87951068681,2290.80601133008,1547.32884942259,1809.57342389766,"no","OS04G0647800","Glycerol kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q0ILB9]","Similar to Glycerol kinase-like protein. (Os04t0647800-01);Similar to Glycerol kinase-like protein. (Os04t0647800-02)",4,32956000,32959941,"GO:0004370;GO:0005739;GO:0006072;GO:0016310;GO:0016301;GO:0016773;GO:0005975;GO:0046167;GO:0006641;GO:0006071;GO:0002237;GO:0009617;GO:0010188;GO:0019563;GO:0042742;GO:0080167;GO:0005829","glycerol kinase activity;mitochondrion;glycerol-3-phosphate metabolic process;phosphorylation;kinase activity;phosphotransferase activity, alcohol group as acceptor;carbohydrate metabolic process;glycerol-3-phosphate biosynthetic process;triglyceride metabolic process;glycerol metabolic process;response to molecule of bacterial origin;response to bacterium;response to microbial phytotoxin;glycerol catabolic process;defense response to bacterium;response to karrikin;cytosol","Catalysis of the reaction: ATP + glycerol = sn-glycerol 3-phosphate + ADP + 2 H(+). [EC:2.7.1.30, RHEA:21647];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:go_curators, ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:ai];The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins. [ISBN:0198506732];The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:ai, ISBN:0198506732];Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. [GOC:rl, GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microbial phytotoxin stimulus. A microbial phytotoxin is a chemical substance produced by microbes which is toxic to plants. [GOC:sm];The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:go_curators, ISBN:0198506732];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS05T0155200-01",0.00721739295909932,0.12006022415957701,-0.385378408646652,"OS05G0155200",null,896.402766769955,812.521166010364,683.871216361193,624.443634789485,"no","OS05G0155200",null,"Similar to Ethylene receptor. (Os05t0155200-01);Similar to Ethylene receptor-like protein (Fragment). (Os05t0155200-02)",5,3233024,3237383,"GO:0009873;GO:0000160;GO:0004673;GO:0005789;GO:0005783;GO:0018106;GO:0016310;GO:0016301;GO:0023014;GO:0016772;GO:0000155;GO:0007165;GO:0046872;GO:0005524;GO:0000166;GO:0016020;GO:0016021;GO:0016740;GO:0005622","ethylene-activated signaling pathway;phosphorelay signal transduction system;protein histidine kinase activity;endoplasmic reticulum membrane;endoplasmic reticulum;peptidyl-histidine phosphorylation;phosphorylation;kinase activity;signal transduction by protein phosphorylation;transferase activity, transferring phosphorus-containing groups;phosphorelay sensor kinase activity;signal transduction;metal ion binding;ATP binding;nucleotide binding;membrane;integral component of membrane;transferase activity;intracellular","A series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription. [GOC:jy, PMID:24012247];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine. [EC:2.7.13.3, GOC:mah];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine). [RESID:AA0035, RESID:AA0036];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS06T0663200-01",0.007219107424319641,0.12006022415957701,-0.306866516561825,"OS06G0663200",null,1304.64501686548,1290.78015031671,990.340642748171,1107.78980105432,"no","OS06G0663200","Os06g0663200 protein [Source:UniProtKB/TrEMBL;Acc:Q654A0]","Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-). (Os06t0663200-01)",6,27363816,27369244,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0462200-01",7.2227903903280604E-3,0.12006022415957701,-0.47829435335531,"OS07G0462200",null,5858.67152886153,6752.40652797259,4242.36563021581,4810.19134073321,"no","OS07G0462200","Os07g0462200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3C2]","Protein of unknown function DUF1218 family protein. (Os07t0462200-01)",7,16226697,16230667,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0391000-00",0.00722930913242657,0.12010323687542,3.59059809078788,"OS08G0391000",null,3.05776175827846,1.1167830934226,20.4898064016863,29.800798478656098,"no","OS08G0391000","Os08g0391000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFL1]","Hypothetical protein. (Os08t0391000-00)",8,18509099,18510110]
["OS05T0551600-01",0.007238821639875031,0.12019591235949,-1.06826570144447,"OS05G0551600",null,94.7906145066323,75.1411092289633,35.1253824028908,45.9136866398174,"no","OS05G0551600","Os05g0551600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQM8]","Hypothetical conserved gene. (Os05t0551600-01)",5,27417896,27419058]
["OS04T0502800-01",0.00724959413253447,0.12030939703269601,-0.438478765155045,"OS04G0502800",null,4590.7196530954,5246.49635260309,3427.65189948209,3831.35061705029,"no","OS04G0502800","Os04g0502800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBY7]","Similar to Nodulin-like protein. (Os04t0502800-01)",4,25102568,25107581,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0572100-03",0.0072926836550966,0.12047717926606501,0.478925978710225,"OS11G0572100","RFC1",450.315015708402,385.990753194925,612.852735748402,552.711405642843,"no","OS11G0572100","NA","Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replication factor C 110 kDa subunit. (Os11t0572100-04)","NA","NA","NA","NA","NA","NA"]
["OS01T0223900-01",0.0072896828451595,0.12047717926606501,0.510828541749063,"OS01G0223900",null,281.762176337544,239.833951374636,357.870317503141,385.335451745616,"no","OS01G0223900","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9LDT8]","Serine/threonine protein kinase-related domain containing protein. (Os01t0223900-01)",1,6787094,6789730,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0626200-01",7.3010813950885305E-3,0.12047717926606501,-0.277254502626529,"OS01G0626200",null,1329.10711093171,1380.33188323342,1115.23089129178,1120.4893314015,"no","OS01G0626200","Os01g0626200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5G8]","Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain domain containing protein. (Os01t0626200-01)",1,25002693,25003291,"GO:0008565;GO:0015031;GO:0030131;GO:0030117;GO:0016192;GO:0006886;GO:0006810;GO:0016020","protein transporter activity;protein transport;clathrin adaptor complex;membrane coat;vesicle-mediated transport;intracellular protein transport;transport;membrane","Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A membrane coat adaptor complex that links clathrin to a membrane. [GOC:mah];Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0179950-00",0.00731584855599393,0.12047717926606501,0.561059663819069,"OS02G0179950",null,362.993577633463,294.292756743419,505.327559191725,464.40145786954,"no","OS02G0179950","Os02g0179950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KET3]","Hypothetical protein. (Os02t0179950-00)",2,4440636,4448187,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0700600-05",7.3096621444230505E-3,0.12047717926606501,-0.448999834449447,"OS02G0700600","CDKF-4",1470.9961824719,1717.70820556264,1117.3746677712,1218.51239416713,"no","OS02G0700600","Cyclin-dependent kinase F-4 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z8C8]","Similar to GAMYB-binding protein. (Os02t0700600-01);Similar to Cyclin-dependent kinase F-4. (Os02t0700600-02);Similar to cDNA clone:J013158B11, full insert sequence. (Os02t0700600-03);Similar to Cyclin-dependent kinase F-4. (Os02t0700600-04);Non-protein coding transcript. (Os02t0700600-05)",2,28820864,28826606,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301;GO:0004674;GO:0000166;GO:0010468;GO:0008353;GO:0004693;GO:0035556;GO:0005634;GO:0005737;GO:0051726;GO:0016740","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity;protein serine/threonine kinase activity;nucleotide binding;regulation of gene expression;RNA polymerase II carboxy-terminal domain kinase activity;cyclin-dependent protein serine/threonine kinase activity;intracellular signal transduction;nucleus;cytoplasm;regulation of cell cycle;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];Catalysis of the reaction: ATP + (DNA-directed RNA polymerase II) = ADP + phospho-(DNA-directed RNA polymerase II); phosphorylation occurs on residues in the carboxy-terminal domain (CTD) repeats. [EC:2.7.11.23, GOC:mah];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. This reaction requires the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK). [GOC:pr, GOC:rn, PMID:7877684, PMID:9841670];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0189400-01",7.3188545665690205E-3,0.12047717926606501,-0.485316677238798,"OS03G0189400",null,1480.9759449262,1394.74250692117,931.798338743353,1122.44310530107,"no","OS03G0189400","Os03g0189400 protein [Source:UniProtKB/TrEMBL;Acc:Q10QP0]","Similar to Alcohol dehydrogenase ADH. (Os03t0189400-01)",3,4667276,4679965,"GO:0046872;GO:0016491;GO:0055114;GO:0008270","metal ion binding;oxidoreductase activity;oxidation-reduction process;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS04T0583900-01",0.007307747754473281,0.12047717926606501,0.393764312289389,"OS04G0583900",null,385.277981543086,367.470904037533,505.415224574929,483.559040142758,"no","OS04G0583900","OSJNBa0088A01.20 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUC8]","Similar to LHY protein. (Os04t0583900-01)",4,29500955,29503774,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0353200-00",0.007279916083981041,0.12047717926606501,"Inf","OS05G0353200",null,0,0,105.063116141519,60.8217186255792,"no","OS05G0353200","Os05g0353200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WL30]","Hypothetical protein. (Os05t0353200-00)",5,16686972,16690961]
["OS05T0381400-01",0.00731009969822989,0.12047717926606501,2.8652392387131203,"OS05G0381400",null,6.11552351655692,2.05866052682091,23.4169216019272,36.1448171419839,"no","OS05G0381400","Os05g0381400 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4D2]","AWPM-19-like protein, Stress tolerance through ABA-dependent patheway (Os05t0381400-01)",5,18429433,18430290,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0387200-02",0.007267588794328841,0.12047717926606501,-0.7903465348688581,"OS05G0387200",null,491.78311060876,466.891933626183,233.568985531056,320.741901122092,"no","OS05G0387200","UDP-sulfoquinovose synthase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G33030) UniProtKB/Swiss-Prot;Acc:O48917]","Similar to UDP-sulfoquinovose synthase, chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SoSQD1). (Os05t0387200-01);Similar to UDP-sulfoquinovose synthase. (Os05t0387200-02)",5,18738656,18741959,"GO:0050662;GO:0003824;GO:0008146;GO:0008270;GO:0009247;GO:0016036;GO:0009507","coenzyme binding;catalytic activity;sulfotransferase activity;zinc ion binding;glycolipid biosynthetic process;cellular response to phosphate starvation;chloroplast","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS06T0707300-02",0.0072778472176787,0.12047717926606501,-1.53599676463923,"OS06G0707300",null,72.3670282792569,106.021017131277,23.4169216019272,38.0985910415506,"no","OS06G0707300","Os06g0707300 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z8T5]","Cyclin-like F-box domain containing protein. (Os06t0707300-02)",6,29891030,29892905]
["OS07T0472400-01",0.007318297476243051,0.12047717926606501,-0.318330003159541,"OS07G0472400",null,973.387493051977,976.834419976523,742.511555794442,821.561924767796,"no","OS07G0472400","Os07g0472400 protein [Source:UniProtKB/TrEMBL;Acc:Q0D6J6]","Serine/threonine protein kinase-related domain containing protein. (Os07t0472400-01)",7,16966933,16969895,"GO:0010468;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0006468;GO:0005524;GO:0004672","regulation of gene expression;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;protein phosphorylation;ATP binding;protein kinase activity","Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0613500-01",0.00726863601227871,0.12047717926606501,-0.647621933471748,"OS07G0613500",null,538.509898413217,426.800452978506,292.202268202815,323.985872450226,"no","OS07G0613500","Os07g0613500 protein [Source:UniProtKB/TrEMBL;Acc:Q8H3A6]","Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-). (Os07t0613500-01)",7,25255066,25259961,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0450000-01",0.007288720745278461,0.12047717926606501,-0.496136287303837,"OS10G0450000",null,323.13756441604,317.320370862705,237.416310569767,216.670310724031,"no","OS10G0450000","Os10g0450000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUT5]","Protein of unknown function DUF247, plant family protein. (Os10t0450000-01);Hypothetical conserved gene. (Os10t0450000-02)",10,16385114,16386762,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0482500-01",0.007295693093004291,0.12047717926606501,-0.42751455506929203,"OS12G0482500",null,580.285001406217,528.691280920809,384.396203628431,440.173840693638,"no","OS12G0482500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QQV4]","Protein of unknown function DUF593 domain containing protein. (Os12t0482500-01)",12,17779264,17782698]
["OS03T0206600-01",0.007325192028153231,0.12051656803669202,-0.569624259181973,"OS03G0206600",null,233.409147548589,249.09792374533,160.015630946503,165.093894513386,"no","OS03G0206600","CASP-like protein 5A1 [Source:UniProtKB/Swiss-Prot;Acc:Q10Q78]","Uncharacterised protein family UPF0497, trans-membrane plant domain containing protein. (Os03t0206600-01)",3,5586002,5588859,"GO:0005886;GO:0016020;GO:0016021","plasma membrane;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0123200-03",0.007331436209471641,0.120554380555316,-0.5522242405969731,"OS05G0123200",null,5392.96150549334,6076.62648813774,3546.96540328225,4274.92554636196,"no","OS05G0123200","Os05g0123200 protein [Source:UniProtKB/TrEMBL;Acc:Q75L83]","Similar to IQD1. (Os05t0123200-01);IQ calmodulin-binding region domain containing protein. (Os05t0123200-02);Similar to IQD1. (Os05t0123200-03)",5,1291479,1295477]
["OS07T0572400-01",0.00733745362024305,0.12058842550062701,-0.6837203064225771,"OS07G0572400",null,193.658244690969,214.100694789375,113.181787742648,140.671720768802,"no","OS07G0572400","Os07g0572400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZL32]","Conserved hypothetical protein. (Os07t0572400-01)",7,23110169,23111254]
["OS01T0589100-01",0.007356029333609021,0.12066715093998201,-0.4424240027184,"OS01G0589100",null,628.879668285937,647.448735685177,428.334524301918,510.911874736691,"no","OS01G0589100","Os01g0589100 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZC74]","Conserved hypothetical protein. (Os01t0589100-01)",1,22983392,22985787]
["OS03T0567600-03",0.007366711428162411,0.12066715093998201,-0.251896380384369,"OS03G0567600",null,2981.02081483836,3105.24898821162,2501.70875500565,2609.49076496417,"no","OS03G0567600","Glycosyltransferase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10I20]","Glycosyltransferase AER61, uncharacterized domain containing protein. (Os03t0567600-01);Glycosyltransferase AER61, uncharacterized domain containing protein. (Os03t0567600-02);Similar to Glycosyltransferase. (Os03t0567600-03)",3,20515441,20519238,"GO:0016757;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring glycosyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0417800-01",0.00736989079778762,0.12066715093998201,-0.442595831441678,"OS04G0417800",null,412.797837367592,413.790765891003,321.006966959752,287.204763236305,"no","OS04G0417800","Os04g0417800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDA3]","WD40 repeat-like domain containing protein. (Os04t0417800-01)",4,20640443,20645375]
["OS05T0406100-03",0.007363378878026781,0.12066715093998201,-0.881920928045504,"OS05G0406100",null,135.182674883594,136.022348808417,84.4143000857857,62.753594501302,"no","OS05G0406100","Os05g0406100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DI97]","Inosine/uridine-preferring nucleoside hydrolase domain containing protein. (Os05t0406100-01);Hypothetical conserved gene. (Os05t0406100-02);Hypothetical conserved gene. (Os05t0406100-03)",5,19780173,19784550,"GO:0006152;GO:0008477;GO:0005829;GO:0016787","purine nucleoside catabolic process;purine nucleosidase activity;cytosol;hydrolase activity","The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:go_curators];Catalysis of the reaction: a N-D-ribosylpurine + H2O = a purine + D-ribose. [EC:3.2.2.1];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS06T0682900-01",7.3649771139544405E-3,0.12066715093998201,0.39090758596645103,"OS06G0682900",null,380.181711945955,364.382913247301,495.658173907459,480.628379293408,"no","OS06G0682900","Protein HEAT-STRESS-ASSOCIATED 32 [Source:Projected from Arabidopsis thaliana (AT4G21320) UniProtKB/Swiss-Prot;Acc:Q8GWL1]","Heat stress associated protein, Long-term acquired thermotolerance (Os06t0682900-01)",6,28463798,28466237,"GO:0003824;GO:0009408;GO:0010286;GO:0010608","catalytic activity;response to heat;heat acclimation;posttranscriptional regulation of gene expression","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators];Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript. [GOC:dph, GOC:tb]"]
["OS07T0575900-01",0.00736245537706479,0.12066715093998201,-0.9432068930322761,"OS07G0575900",null,134.541517364252,156.458200038389,62.4451242718059,88.8967124302848,"no","OS07G0575900","Os07g0575900 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZLA9]","Protein of unknown function DUF946, plant family protein. (Os07t0575900-01)",7,23299573,23301820]
["OS08T0425500-01",0.00736147250106976,0.12066715093998201,1.45734638449545,"OS08G0425500",null,19.3658244690969,14.4106236877464,43.9067280036135,48.8443474891674,"no","OS08G0425500","Inositol polyphosphate-5-phosphatase-like [Source:UniProtKB/TrEMBL;Acc:Q84Q50]","Endonuclease/exonuclease/phosphatase domain containing protein. (Os08t0425500-01)",8,20450032,20452270,"GO:0046856;GO:0016787","phosphatidylinositol dephosphorylation;hydrolase activity","The process of removing one or more phosphate groups from a phosphatidylinositol. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0615100-01",0.00737429833520293,0.12066813901756601,1.45509781427527,"OS01G0615100",null,75.4247900375354,82.3464210728365,158.064220813009,274.505232889121,"no","OS01G0615100","Os01g0615100 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZDX2]","Similar to Substilin /chymotrypsin-like inhibitor (Proteinase inhibitor). (Os01t0615100-01)",1,24392841,24393423,"GO:0009611;GO:0004867;GO:0010951;GO:0006508;GO:0008233","response to wounding;serine-type endopeptidase inhibitor activity;negative regulation of endopeptidase activity;proteolysis;peptidase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. [GOC:ai];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0750000-01",0.00737950556882023,0.12066813901756601,4.4780318831246095,"OS03G0750000",null,0,2.05866052682091,29.271152002409,16.6070781463169,"no","OS03G0750000","Os03g0750000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KI21]","Similar to ethylene-responsive protein. (Os03t0750000-01)",3,30901840,30903031,"GO:0006950","response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS10T0531400-01",0.00738179994186404,0.12066813901756601,0.576828856314058,"OS10G0531400",null,158.237008597724,153.973015304204,225.212728132081,240.469463983126,"no","OS10G0531400","Glutathione S-transferase GSTU6, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8L4V6]","Glutathione S-transferase GST 30 (EC 2.5.1.18). (Os10t0531400-01)",10,20645931,20646880,"GO:0005737;GO:0004364;GO:0016740;GO:0006749;GO:0009407","cytoplasm;glutathione transferase activity;transferase activity;glutathione metabolic process;toxin catabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. [GOC:go_curators]"]
["OS01T0218100-01",0.00739029961964584,0.12067794440375201,0.326907022806777,"OS01G0218100",null,1680.74971313373,1483.26490957447,1943.60449295996,2025.08664690088,"no","OS01G0218100","DNA binding protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FTQ1]","Helix-loop-helix DNA-binding domain containing protein. (Os01t0218100-01)",1,6462770,6465035,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS01T0925300-01",7.3902170671780905E-3,0.12067794440375201,-0.675365182356445,"OS01G0925300",null,1853.73285708466,2394.61629206453,1283.71797834318,1376.4865228404,"no","OS01G0925300","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:Q5JK16]","Zinc finger, DHHC-type domain containing protein. (Os01t0925300-01)",1,40566683,40569769,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0376700-00",7.4026546467021405E-3,0.12081512006733101,-0.444842905699435,"OS04G0376700",null,521.858006746191,610.3928462024,399.063372299509,432.760918754024,"no","OS04G0376700","ER lumen protein-retaining receptor B [Source:Projected from Arabidopsis thaliana (AT3G25040) UniProtKB/Swiss-Prot;Acc:Q8VWI1]","Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12). (Os04t0376700-00)",4,18414082,18417621,"GO:0015031;GO:0005789;GO:0005783;GO:0006810;GO:0006621;GO:0046923;GO:0016021;GO:0016020","protein transport;endoplasmic reticulum membrane;endoplasmic reticulum;transport;protein retention in ER lumen;ER retention sequence binding;integral component of membrane;membrane","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. [ISBN:0716731363, PMID:12972550];Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0802500-01",0.007414884323472021,0.12095010456525201,0.551944524150193,"OS03G0802500",null,218.194680261654,191.212959637492,280.498108354047,319.718212504123,"no","OS03G0802500","AAA1 [Source:UniProtKB/TrEMBL;Acc:Q84SZ7]","ATPase, AAA-type, core domain containing protein. (Os03t0802500-01)",3,33482291,33484111,"GO:0005524;GO:0000166;GO:0016020;GO:0016021","ATP binding;nucleotide binding;membrane;integral component of membrane","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0771900-01",0.00742457304626,0.12104351958876,0.40574527965024,"OS01G0771900",null,353.681110040876,358.206931666839,481.022597906255,462.067527247524,"no","OS01G0771900","Os01g0771900 protein [Source:UniProtKB/TrEMBL;Acc:Q94ED2]","Similar to Exo-beta-glucanase. (Os01t0771900-01)",1,32580716,32586143,"GO:0008422;GO:0005886;GO:0003723;GO:0004553;GO:0005975;GO:0016787;GO:0009251;GO:0016020;GO:0016021","beta-glucosidase activity;plasma membrane;RNA binding;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;glucan catabolic process;membrane;integral component of membrane","Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glucans, polysaccharides consisting only of glucose residues. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0821300-02",0.0074335682231848,0.121060968206152,-0.267742269414579,"OS03G0821300","XB15",1684.76601887145,1641.88851312991,1353.56500413512,1409.61545011252,"no","OS03G0821300","Protein phosphatase 2C 35 [Source:UniProtKB/Swiss-Prot;Acc:Q84T94]","Similar to TA11 protein (Fragment). (Os03t0821300-01);Similar to Protein phosphatase 2C 35. (Os03t0821300-02)",3,34474697,34478370,"GO:0006470;GO:0004722;GO:0003824;GO:0005515;GO:0006952;GO:0005886;GO:0004721;GO:0046872;GO:0016787;GO:0016020","protein dephosphorylation;protein serine/threonine phosphatase activity;catalytic activity;protein binding;defense response;plasma membrane;phosphoprotein phosphatase activity;metal ion binding;hydrolase activity;membrane","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0368350-00",0.00743263980237377,0.121060968206152,0.90531382807053,"OS05G0368350",null,510.72965038574,392.154885440347,950.054074128881,741.005207433915,"no","OS05G0368350","Os05g0368350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WLE5]","Hypothetical gene. (Os05t0368350-00)",5,17693870,17695489]
["OS03T0805300-01",0.007489334782555,0.12177443122757901,-0.250631748927513,"OS03G0805300","PP2A2",2832.50664208528,3016.96700205605,2439.26266686742,2477.38530465057,"no","OS03G0805300","Serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:Q10BT5]","Similar to Phosphoprotein phosphatase 2A isoform 4. (Os03t0805300-01)",3,33621970,33626503,"GO:0005737;GO:0006470;GO:0004721;GO:0016787;GO:0046872","cytoplasm;protein dephosphorylation;phosphoprotein phosphatase activity;hydrolase activity;metal ion binding","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS06T0711600-02",0.00748824215351632,0.12177443122757901,0.32080231722920904,"OS06G0711600",null,3914.95430451586,3520.30950086376,4813.15309426279,4473.67704574594,"no","OS06G0711600","GCIP-interacting family protein-like [Source:UniProtKB/TrEMBL;Acc:Q5Z7Y7]","mRNA splicing factor SYF2 family protein. (Os06t0711600-01);mRNA splicing factor SYF2 family protein. (Os06t0711600-02)",6,30087165,30089572,"GO:0071013;GO:0000974;GO:0071014","catalytic step 2 spliceosome;Prp19 complex;post-mRNA release spliceosomal complex","A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p. [GOC:krc, PMID:16540691, PMID:19239890];A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:19239890]"]
["OS09T0319701-01",0.0074860261862611,0.12177443122757901,-0.396488865636825,"OS09G0319701",null,886.750909900754,889.341347586634,620.548422451071,728.757664538378,"no","OS09G0319701","Os09g0319701 protein [Source:UniProtKB/TrEMBL;Acc:C7J6X7]","Conserved hypothetical protein. (Os09t0319701-01)",9,9087464,9088385]
["OS01T0839900-01",0.007498586015438471,0.12185999997004,0.504658448834317,"OS01G0839900",null,366.931410993416,302.623097442674,458.581381371074,491.374135741024,"no","OS01G0839900","Os01g0839900 protein [Source:UniProtKB/TrEMBL;Acc:Q943L0]","Thaumatin, pathogenesis-related family protein. (Os01t0839900-01)",1,36029895,36030895,"GO:0009505;GO:0009506","plant-type cell wall;plasmodesma","A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS01T0853000-01",0.00752942757695232,0.12208757331278601,0.43096157000704804,"OS01G0853000",null,317.393847222039,350.246246416857,454.61087399226,445.455980688288,"no","OS01G0853000","Os01g0853000 protein [Source:UniProtKB/TrEMBL;Acc:Q5N9C0]","Conserved hypothetical protein. (Os01t0853000-01)",1,36736127,36737198,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0313700-02",0.007525649260780941,0.12208757331278601,-0.348383874759001,"OS02G0313700",null,688.804040164429,657.318804959794,526.880736043362,530.449613732358,"no","OS02G0313700","C2 domain-containing protein-like [Source:UniProtKB/TrEMBL;Acc:Q6Z6R6]","Similar to NTMC2T6.1/NTMC2TYPE6.1. (Os02t0313700-01);Similar to Synaptotagmin C (Synaptic vesicle protein O-p65-C). (Os02t0313700-02)",2,12398146,12405155,"GO:0005783;GO:0016020;GO:0016021;","endoplasmic reticulum;membrane;integral component of membrane;","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS03T0261900-01",0.00752429205302256,0.12208757331278601,-0.38965269920711604,"OS03G0261900",null,669.865686367178,725.571669412863,549.540128150445,515.615813974107,"no","OS03G0261900","HEAT repeat family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NR5]","Similar to HEAT repeat family protein, expressed. (Os03t0261900-01);Armadillo-like helical domain containing protein. (Os03t0261900-02)",3,8546948,8552114,"GO:0031965;GO:0006607;GO:0008565;GO:0008139;GO:0005737;GO:0008536;GO:0006886;GO:0005622;GO:0000060;GO:0006610;GO:0034399;","nuclear membrane;NLS-bearing protein import into nucleus;protein transporter activity;nuclear localization sequence binding;cytoplasm;Ran GTPase binding;intracellular protein transport;intracellular;protein import into nucleus, translocation;ribosomal protein import into nucleus;nuclear periphery;","Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. [GOC:mah, GOC:pz];The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane. [GOC:ai];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope. [GOC:curators, ISBN:0198506732, PMID:14570049, PMID:9126736];The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane. [GOC:ai];The portion of the nuclear lumen proximal to the inner nuclear membrane. [GOC:krc, GOC:mah];"]
["OS03T0701000-02",0.007532569903593911,0.12208757331278601,-0.37027239283989105,"OS03G0701000",null,738.112677590917,826.83033578376,620.214452516018,590.482448437738,"no","OS03G0701000","Os03g0701000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1W1]","Similar to HEAT repeat family protein, expressed. (Os03t0701000-01);Similar to cDNA clone:J013135O16, full insert sequence. (Os03t0701000-02)",3,28128716,28137109]
["OS06T0169900-00",0.00753237180316296,0.12208757331278601,-0.879959846560988,"OS06G0169900",null,365.758532869761,459.9924728509,194.166057292927,254.532633665604,"no","OS06G0169900","Os06g0169900 protein [Source:UniProtKB/TrEMBL;Acc:A3B8T3]","Similar to GOS9 protein. (Os06t0169900-00)",6,3507359,3509141,"GO:0030246","carbohydrate binding","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah]"]
["OS04T0271200-01",0.007546134048802931,0.12218080199157101,-0.453191159475536,"OS04G0271200","PAS2A",415.097886821585,442.33404216035,317.590687606456,308.699372340564,"no","OS04G0271200","Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Source:UniProtKB/Swiss-Prot;Acc:Q7XSZ4]","Protein-tyrosine phosphatase-like, PTPLA domain containing protein. (Os04t0271200-01)",4,11336081,11338792,"GO:0030176;GO:0030148;GO:0005789;GO:0005783;GO:0006631;GO:0102345;GO:0102344;GO:0006629;GO:0007275;GO:0006633;GO:0016829;GO:0016020;GO:0016021;GO:0042761;GO:0102343;GO:0018812;GO:0030497","integral component of endoplasmic reticulum membrane;sphingolipid biosynthetic process;endoplasmic reticulum membrane;endoplasmic reticulum;fatty acid metabolic process;3-hydroxy-lignoceroyl-CoA dehydratase activity;3-hydroxy-behenoyl-CoA dehydratase activity;lipid metabolic process;multicellular organism development;fatty acid biosynthetic process;lyase activity;membrane;integral component of membrane;very long-chain fatty acid biosynthetic process;3-hydroxy-arachidoyl-CoA dehydratase activity;3-hydroxyacyl-CoA dehydratase activity;fatty acid elongation","The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];The chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];Catalysis of the reaction: (R)-3-hydroxylignoceroyl-CoA(4-) <=> trans-2-tetracosenoyl-CoA + H2O. [EC:4.2.1.134];Catalysis of the reaction: (R)-3-hydroxybehenoyl-CoA <=> trans-2-docosenoyl-CoA + H2O. [EC:4.2.1.134];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways resulting in the formation of a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:go_curators];Catalysis of the reaction: (R)-3-hydroxyicosanoyl-CoA <=> trans-2-icosenoyl-CoA + H2O [EC:4.2.1.134];Catalysis of the reaction: alkene-CoA + H2O = alcohol-CoA. Substrates are crotonoyl-CoA (producing 3-hydroxyacyl-CoA) and 2,3-didehydro-pimeloyl-CoA (producing 3-hydroxypimeloyl-CoA). [UM-BBD_ruleID:bt0291];The elongation of a fatty acid chain by the sequential addition of two-carbon units. [ISBN:0716720094]"]
["OS10T0522700-01",0.00754632015442836,0.12218080199157101,0.801901028289789,"OS10G0522700",null,997.849587118205,1033.4475844641,1495.7558673231,2045.60127284633,"no","OS10G0522700","Os10g0522700 protein [Source:UniProtKB/TrEMBL;Acc:Q9AUY2]","Conserved hypothetical protein. (Os10t0522700-01)",10,20271867,20272423]
["OS11T0272800-01",0.007558027362744191,0.122305536009831,-0.29385181209275,"OS11G0272800",null,1042.69675957296,1038.59423578115,869.353214471548,828.40013341628,"no","OS11G0272800","Os11g0272800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y0Y1]","Similar to Ulp1 protease family, C-terminal catalytic domain containing protein, expressed. (Os11t0272800-01)",11,9633317,9633699]
["OS06T0264300-02",0.00758298487040709,0.122644443494271,0.256989916790262,"OS06G0264300",null,3507.70622672484,3248.27311440688,3976.64026542852,4096.63920187254,"no","OS06G0264300","Os06g0264300 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z6P9]","Similar to RAD23, isoform I. (Os06t0264300-01);Similar to RAD23, isoform I. (Os06t0264300-02);Similar to DNA repair protein RAD23. (Os06t0264300-03)",6,8720602,8726645,"GO:0043161;GO:0003684;GO:0006289;GO:0005634","proteasome-mediated ubiquitin-dependent protein catabolic process;damaged DNA binding;nucleotide-excision repair;nucleus","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Interacting selectively and non-covalently with damaged DNA. [GOC:jl];A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). [PMID:10197977];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS01T0384800-01",0.00761045292216571,0.12268714472055801,0.594436508133179,"OS01G0384800",null,193.658244690969,162.634181618852,251.731907220717,286.227876286521,"no","OS01G0384800","Os01g0384800 protein [Source:UniProtKB/TrEMBL;Acc:Q5VNY3]","Conserved hypothetical protein. (Os01t0384800-01)",1,16130515,16131331]
["OS01T0888900-01",7.6082419798608105E-3,0.12268714472055801,-0.533809446494666,"OS01G0888900",null,298.641398391863,273.801850067181,195.141013349393,200.261824705587,"no","OS01G0888900","Os01g0888900 protein [Source:UniProtKB/TrEMBL;Acc:Q5N819]","Conserved hypothetical protein. (Os01t0888900-01)",1,38645146,38645757]
["OS02T0120800-02",0.00764497017278263,0.12268714472055801,-0.499766259191104,"OS02G0120800","RAC6",4192.54552958604,5088.12377158031,3207.62563409482,3355.86187169922,"no","OS02G0120800","Rac-like GTP-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZHA3]","Similar to Small GTP-binding protein (Fragment). (Os02t0120800-01);Similar to Small GTP-binding protein (Fragment). (Os02t0120800-02)",2,1080513,1084282,"GO:0005515;GO:0005525;GO:0005737;GO:0007264;GO:0005622;GO:0000166;GO:0003924;GO:0016020;GO:0005886","protein binding;GTP binding;cytoplasm;small GTPase mediated signal transduction;intracellular;nucleotide binding;GTPase activity;membrane;plasma membrane","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS02T0310200-01",7.6140480108865104E-3,0.12268714472055801,-0.233992518735873,"OS02G0310200",null,4191.17211668035,4167.7298013369,3574.97195311912,3532.42321041659,"no","OS02G0310200","Os02g0310200 protein [Source:UniProtKB/TrEMBL;Acc:Q6YYJ5]","Conserved hypothetical protein. (Os02t0310200-01)",2,12185506,12187024]
["OS02T0556100-01",0.007605895274663311,0.12268714472055801,0.26764897312186803,"OS02G0556100",null,1628.76776324299,1699.42426489066,2079.22749723779,1927.39795192255,"no","OS02G0556100","Dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q6ZI86]","NAD(P)-binding domain containing protein. (Os02t0556100-01)",2,21027755,21038792]
["OS02T0712400-01",0.007628762378524251,0.12268714472055801,-0.5809461908232171,"OS02G0712400",null,270.102288647931,235.716630320994,163.91845121349,174.234233485025,"no","OS02G0712400","Os02g0712400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DY68]","Similar to H0721B11.1 protein. (Os02t0712400-01)",2,29501312,29502455]
["OS02T0714000-03",7.6593653653199605E-3,0.12268714472055801,-0.388197430639726,"OS02G0714000",null,596.314826080372,608.262974147922,462.627386867983,457.770863053299,"no","OS02G0714000","Os02g0714000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DY58]","Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os02t0714000-01);Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os02t0714000-02);Hypothetical gene. (Os02t0714000-03)",2,29594623,29598898,"GO:0016020;GO:0016021;GO:0003723;GO:0003676;GO:0008270","membrane;integral component of membrane;RNA binding;nucleic acid binding;zinc ion binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0170400-02",0.007661410015382911,0.12268714472055801,0.27640979648006503,"OS03G0170400",null,1512.47218408152,1510.52754635347,1825.88297159375,1835.50498168957,"no","OS03G0170400","Os03g0170400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTK6]","Similar to serine/threonine-protein kinase NAK. (Os03t0170400-01);Similar to serine/threonine-protein kinase NAK. (Os03t0170400-02)",3,3767426,3771538,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0633800-01",7.6354673587837206E-3,0.12268714472055801,-0.266612677964644,"OS03G0633800","IAA12",1956.83586025533,2024.29297449231,1588.66474907537,1720.72424981737,"no","OS03G0633800","Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q75GK1]","Similar to IAA6 (Fragment). (Os03t0633800-01)",3,24212554,24213858,"GO:0009733;GO:0005634;GO:0009734;GO:0006355;GO:0006351","response to auxin;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0826200-01",0.007652704131000391,0.12268714472055801,-2.25272356552285,"OS03G0826200",null,25.4813479856539,34.9972289559555,7.80564053397574,4.88443474891674,"no","OS03G0826200","Os03g0826200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W4X5]","Conserved hypothetical protein. (Os03t0826200-01)",3,34707024,34707736]
["OS05T0157300-01",0.00762287955938333,0.12268714472055801,12.7850799364768,"OS05G0157300",null,0,0.0165892209134762,46.8308244012988,70.2588365353914,"no","OS05G0157300","Os05g0157300 protein [Source:UniProtKB/TrEMBL;Acc:Q75M00]","4Fe-4S ferredoxin, iron-sulpur binding domain domain containing protein. (Os05t0157300-01);Similar to 4Fe-4S ferredoxin, iron-sulfur binding protein. (Os05t0157300-02);Similar to 4Fe-4S ferredoxin, iron-sulfur binding protein. (Os05t0157300-03)",5,3348814,3352799,"GO:0005524;GO:0005852;GO:0006413;GO:0005506;GO:0005622;GO:0000054;GO:0043024;GO:0006415","ATP binding;eukaryotic translation initiation factor 3 complex;translational initiation;iron ion binding;intracellular;ribosomal subunit export from nucleus;ribosomal small subunit binding;translational termination","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. [PMID:15904532];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of a ribosomal subunit from the nucleus into the cytoplasm. [GOC:ai];Interacting selectively and non-covalently with any part of the small ribosomal subunit. [GOC:go_curators];The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). [GOC:hjd, ISBN:019879276X]"]
["OS05T0529700-03",0.007628773859582371,0.12268714472055801,1.80738408657432,"OS05G0529700",null,29.0407880165722,62.6500473924533,154.086859496125,166.837551953958,"no","OS05G0529700","Os05g0529700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQ21]","Similar to electron transporter/ heat shock protein binding protein. (Os05t0529700-01);Similar to electron transporter/ heat shock protein binding protein. (Os05t0529700-02);Heat shock protein DnaJ family protein. (Os05t0529700-03)",5,26310862,26314173,"GO:0009055;GO:0005506","electron carrier activity;iron ion binding","Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai]"]
["OS05T0554400-01",7.6034524228605705E-3,0.12268714472055801,-0.389554807396754,"OS05G0554400",null,594.361403416918,609.863084834392,475.324035579849,443.938947927785,"no","OS05G0554400",null,"Phosphatidyl serine synthase family protein. (Os05t0554400-01);Similar to Phosphatidylserine synthase 2. (Os05t0554400-02)",5,27552789,27558220,"GO:0006659;GO:0016020;GO:0016021;GO:0008654;GO:0005789;GO:0005783;GO:0006629;GO:0006646;GO:0016740;GO:0003882","phosphatidylserine biosynthetic process;membrane;integral component of membrane;phospholipid biosynthetic process;endoplasmic reticulum membrane;endoplasmic reticulum;lipid metabolic process;phosphatidylethanolamine biosynthetic process;transferase activity;CDP-diacylglycerol-serine O-phosphatidyltransferase activity","The chemical reactions and pathways resulting in the formation of phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: CDP-diacylglycerol + L-serine = CMP + O-sn-phosphatidyl-L-serine. [EC:2.7.8.8]"]
["OS06T0325200-00",7.6276938577525604E-3,0.12268714472055801,"-Inf","OS06G0325200","PHT1-10",70.6890892506809,10.6745360649973,0,0,"no","OS06G0325200","Probable inorganic phosphate transporter 1-10 [Source:UniProtKB/Swiss-Prot;Acc:Q69T94]","Phosphate transporter, Phosphate uptake (Os06t0325200-01)",6,12692305,12694901,"GO:0022891;GO:0005887;GO:0022857;GO:0006810;GO:0055085;GO:0005215;GO:0016021;GO:0015293;GO:0016020;GO:0006817","substrate-specific transmembrane transporter activity;integral component of plasma membrane;transmembrane transporter activity;transport;transmembrane transport;transporter activity;integral component of membrane;symporter activity;membrane;phosphate ion transport","Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]"]
["OS06T0699600-01",7.6232895393962405E-3,0.12268714472055801,-0.48942083397085606,"OS06G0699600",null,757.305662133633,799.789614669924,501.512404307941,607.623682765243,"no","OS06G0699600","Os06g0699600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z857]","CCT domain containing protein. (Os06t0699600-01)",6,29407744,29411786,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS09T0466100-01",0.007651930856677091,0.12268714472055801,1.40098864595094,"OS09G0466100","CYCD4-1",49.4040960254034,42.7650042051048,94.5864929068485,148.815961862029,"no","OS09G0466100","Cyclin-D4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q6YXH8]","Cyclin, A/B/D/E domain containing protein. (Os09t0466100-01);Similar to cDNA clone:001-123-E03, full insert sequence. (Os09t0466100-02)",9,17680931,17683507,"GO:0051301;GO:0007049;GO:0005634","cell division;cell cycle;nucleus","The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS10T0567800-02",0.007645131415504031,0.12268714472055801,-0.403353434677983,"OS10G0567800",null,600.193286463635,575.168559022581,440.622970827762,448.066645675364,"no","OS10G0567800","Dynamin-related protein 1C, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XBZ9]","Similar to Dynamin-related protein 1E (Dynamin-like protein E) (Dynamin-like protein 4) (Dynamin-like protein DLP2). (Os10t0567800-01);Similar to predicted protein. (Os10t0567800-02)",10,22504534,22510131,"GO:0005525;GO:0003924;GO:0000266;GO:0008017;GO:0005737;GO:0000166","GTP binding;GTPase activity;mitochondrial fission;microtubule binding;cytoplasm;nucleotide binding","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. [PMID:11038192];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS10T0569600-00",0.007647913809344811,0.12268714472055801,1.8341772773351601,"OS10G0569600",null,34.3920277326686,20.1557351591777,72.7786394338768,121.721233475907,"no","OS10G0569600","Os10g0569600 protein [Source:UniProtKB/TrEMBL;Acc:Q8S7P6]","Similar to RIR1b protein precursor. (Os10t0569600-00)",10,22582333,22582812]
["OS11T0256900-01",0.007661923020647551,0.12268714472055801,-1.2194781113395101,"OS11G0256900",null,604.417574219709,464.227948798116,181.481142414936,277.435893738471,"no","OS11G0256900","Os11g0256900 protein [Source:UniProtKB/TrEMBL;Acc:C7J9B3]","SAM dependent carboxyl methyltransferase family protein. (Os11t0256900-01)",11,8466832,8469347,"GO:0032259;GO:0008168","methylation;methyltransferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732]"]
["OS03T0809000-01",0.007682912597969421,0.12289442182888101,-1.65827088517221,"OS03G0809000",null,1354.58845891736,2562.00302562862,639.086818719263,601.762361066543,"no","OS03G0809000","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:Q6ATP8]","Plant disease resistance response protein family protein. (Os03t0809000-01)",3,33834638,33835499,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS05T0559600-01",0.007682722516849471,0.12289442182888101,-0.23568009174606402,"OS05G0559600",null,3115.85923168575,3183.71850472854,2647.08784608452,2703.04619005053,"no","OS05G0559600","Probable glucuronosyltransferase Os05g0559600 [Source:UniProtKB/Swiss-Prot;Acc:Q6AT32]","Glycosyl transferase, family 43 protein. (Os05t0559600-01)",5,27860628,27865020,"GO:0000139;GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0071555;GO:0016740;GO:0015018;GO:0042285;GO:0009834;GO:0010417","Golgi membrane;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;cell wall organization;transferase activity;galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity;xylosyltransferase activity;plant-type secondary cell wall biogenesis;glucuronoxylan biosynthetic process","The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein. [EC:2.4.1.135];Catalysis of the transfer of a xylosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [GOC:ai];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues. [GOC:tair_curators]"]
["OS03T0412300-01",0.007687624907774511,0.12290545064486,-0.34970446550098205,"OS03G0412300",null,738.959091583962,828.610862045417,606.888551516613,623.253873961777,"no","OS03G0412300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q75J02]","Heavy metal transport/detoxification protein domain containing protein. (Os03t0412300-01)",3,17046920,17049233,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0546100-01",0.007692368908778431,0.12291697432060601,1.63323665470739,"OS01G0546100",null,16.3080627108185,9.2639723706941,40.0039077366256,39.3226327463465,"no","OS01G0546100","WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3T9]","Similar to nodulin-like protein. (Os01t0546100-01)",1,20287702,20290661,"GO:0006810;GO:0022857;GO:0005886;GO:0055085;GO:0016021;GO:0016020","transport;transmembrane transporter activity;plasma membrane;transmembrane transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0543000-02",0.007704191749839381,0.122919203730701,-0.45304763400823905,"OS01G0543000",null,1121.80908854046,1197.73440641775,774.194539056896,920.227506695915,"no","OS01G0543000","Os01g0543000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3Z4]","Hypothetical gene. (Os01t0543000-02)",1,20041617,20044749]
["OS02T0177900-02",0.00769870545686516,0.122919203730701,0.44728599570481903,"OS02G0177900",null,309.131383788561,326.164404379862,431.584388327142,434.624184170314,"no","OS02G0177900","Os02g0177900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KET0]","Carbohydrate kinase, FGGY domain containing protein. (Os02t0177900-01);Carbohydrate kinase, FGGY family protein. (Os02t0177900-02)",2,4304103,4309655,"GO:0016773;GO:0005975;GO:0016310;GO:0016301","phosphotransferase activity, alcohol group as acceptor;carbohydrate metabolic process;phosphorylation;kinase activity","Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS04T0565900-01",0.007704578264738571,0.122919203730701,0.280432892608696,"OS04G0565900",null,2244.41468900516,2250.86007996307,2878.29016471828,2581.48746949945,"no","OS04G0565900","OSJNBa0017B10.16 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQJ2]","Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os04t0565900-01)",4,28369370,28371848,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS09T0503100-01",0.007736992350051971,0.123371915594357,0.506900176922589,"OS09G0503100",null,389.680731518004,437.303175281105,538.316728158279,636.822208507095,"no","OS09G0503100","Os09g0503100 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0N7]","Similar to Quinone-oxidoreductase QR1 (Fragment). (Os09t0503100-01)",9,19468899,19471622,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS01T0168600-01",0.007747721757611491,0.12340651470703601,-0.37165143252242705,"OS01G0168600",null,1149.7184211127,1329.89470032631,943.506799544317,972.979401984216,"no","OS01G0168600","Os01g0168600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYI7]","Similar to predicted protein. (Os01t0168600-01)",1,3511944,3515900,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0753500-01",0.007751279841673311,0.12340651470703601,-0.726178921233524,"OS02G0753500",null,269.083034728505,336.590996135219,165.869861346984,200.261824705587,"no","OS02G0753500","Os02g0753500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPJ9]","Tetratricopeptide-like helical domain containing protein. (Os02t0753500-01)",2,31686188,31689398]
["OS04T0380300-01",0.00774463304033029,0.12340651470703601,0.24008031492068,"OS04G0380300",null,3954.46123526968,4069.79823646492,4835.2325770546,4641.88654958333,"no","OS04G0380300","OSJNBb0089B03.12 protein [Source:UniProtKB/TrEMBL;Acc:Q7XNP9]","Kelch-type beta propeller domain containing protein. (Os04t0380300-01);Non-protein coding transcript. (Os04t0380300-02)",4,18602681,18609094,"GO:0031463;GO:0004842;GO:0016567","Cul3-RING ubiquitin ligase complex;ubiquitin-protein transferase activity;protein ubiquitination","A ubiquitin ligase complex in which a cullin from the Cul3 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a BTB-domain-containing protein. [PMID:15571813, PMID:15688063];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS05T0595400-02",7.7635677222096305E-3,0.12353777137966102,0.27359370268472705,"OS05G0595400",null,6616.3893995316,7258.49108533954,8248.6966360142,8523.46974672042,"no","OS05G0595400","Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q5TKF4]","Nucleoside diphosphate kinase (Os05t0595400-01);Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III). (Os05t0595400-02)",5,29660586,29663517,"GO:0005622;GO:0004550;GO:0006228;GO:0006183;GO:0006165;GO:0006241;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740","intracellular;nucleoside diphosphate kinase activity;UTP biosynthetic process;GTP biosynthetic process;nucleoside diphosphate phosphorylation;CTP biosynthetic process;phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate. [EC:2.7.4.6];The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate. [ISBN:0198506732];The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate. [GOC:ai];The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0214200-01",0.007781107841425641,0.123688036821663,-0.304425853111432,"OS01G0214200",null,1191.6403510423,1265.71643099814,951.028310187192,1038.85176194257,"no","OS01G0214200","Os01g0214200 protein [Source:UniProtKB/TrEMBL;Acc:Q9LHY3]","Esterase, SGNH hydrolase-type, subgroup domain containing protein. (Os01t0214200-01)",1,6242516,6244879,"GO:0016788","hydrolase activity, acting on ester bonds","Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS04T0497400-01",0.00778082851943205,0.123688036821663,"Inf","OS04G0497400",null,0,0,61.2844930284843,52.0393769118806,"no","OS04G0497400","6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q7XUK6]","Similar to 6,7-dimethyl-8-ribityllumazine synthase (Fragment). (Os04t0497400-01);Similar to 6,7-dimethyl-8-ribityllumazine synthase (Fragment). (Os04t0497400-02)",4,24878145,24881728,"GO:0009231;GO:0009570;GO:0016740;GO:0000906;GO:0009349;GO:0009507","riboflavin biosynthetic process;chloroplast stroma;transferase activity;6,7-dimethyl-8-ribityllumazine synthase activity;riboflavin synthase complex;chloroplast","The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 3,4-dihydroxy-2-butanone-4-phosphate + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-ribityllumazine + phosphate. [EC:5.4.-.-, PMID:7559556];An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine. [EC:2.5.1.9];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS01T0803900-01",7.785720486906721E-3,0.12369700068433401,-2.5803477773301298,"OS01G0803900",null,180.853877799589,79.6254250815614,15.3143431027212,28.2379614720927,"no","OS01G0803900","Os01g0803900 protein [Source:UniProtKB/TrEMBL;Acc:B7FA24]","Cytochrome P450 family protein. (Os01t0803900-01)",1,34089461,34091158,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0101000-02",0.00782263934623604,0.12421895909885801,"Inf","OS02G0101000",null,0,0,41.99746720394,60.0893219003491,"no","OS02G0101000","Os02g0101000 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU97]","Amino acid transporter, transmembrane domain containing protein. (Os02t0101000-01);Similar to amino acid permease. (Os02t0101000-02)",2,50308,55886,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0337500-01",0.00783890599896567,0.124412600561246,-0.303543054296241,"OS10G0337500",null,1029.44645862042,1097.26606079555,838.130652335645,885.059576503714,"no","OS10G0337500","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:Q339R3]","Zinc finger, DHHC-type domain containing protein. (Os10t0337500-01)",10,9770801,9776538,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0246500-01",0.007843218690204051,0.12441641610753601,1.01286557223683,"OS06G0246500",null,65.2322508432739,57.6424947509855,147.331465078792,100.619355827685,"no","OS06G0246500","Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q654V6]","Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1). (Os06t0246500-01)",6,7602364,7605689,"GO:0004739;GO:0043231;GO:0016624;GO:0005759;GO:0006096;GO:0006086;GO:0005739;GO:0055114;GO:0016491;GO:0008152","pyruvate dehydrogenase (acetyl-transferring) activity;intracellular membrane-bounded organelle;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;mitochondrial matrix;glycolytic process;acetyl-CoA biosynthetic process from pyruvate;mitochondrion;oxidation-reduction process;oxidoreductase activity;metabolic process","Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. [EC:1.2.4.1];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. [GOC:jl];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. [GOC:dph, GOC:go_curators, GOC:tb];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS04T0446401-00",0.00785310022811928,0.12444394095928402,-0.6267618608507111,"OS04G0446401",null,461.722025500048,578.483608036676,318.079851759511,355.586849721139,"no","OS04G0446401","Os04g0446401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WAV5]","Conserved hypothetical protein. (Os04t0446401-00)",4,22255968,22257458,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0205500-01",0.0078519847451522,0.12444394095928402,-0.32274250928568604,"OS07G0205500",null,1037.52347289432,1064.90812231713,791.596647827866,889.399422964094,"no","OS07G0205500","Os07g0205500 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIY2]","Protein of unknown function DUF239, plant domain containing protein. (Os07t0205500-01)",7,5682013,5685265]
["OS01T0726100-01",0.00788041989411951,0.12450410568951902,-1.10629344047699,"OS01G0726100",null,300.679906230715,252.185914535562,101.473326941685,155.325025015552,"no","OS01G0726100","Os01g0726100 protein [Source:UniProtKB/TrEMBL;Acc:Q8S154]","Pollen Ole e 1 allergen and extensin domain containing protein. (Os01t0726100-01)",1,30272986,30274078]
["OS02T0102300-01",0.00787823531889175,0.12450410568951902,0.560545013911954,"OS02G0102300",null,3289.25459205032,3430.96501342332,4412.08500429695,5499.07137202562,"no","OS02G0102300","Os02g0102300 protein [Source:UniProtKB/TrEMBL;Acc:Q0E4S8]","Arsenate reductase, Sulfurtransferase/rhodanese-like protein, Regulation of arsenic accumulation (Os02t0102300-01)",2,124645,127131]
["OS02T0220000-00",0.007872409124728991,0.12450410568951902,0.9577070223753771,"OS02G0220000","CKX6",43.8279185353246,60.7304855412169,96.5948016079497,106.480677526385,"no","OS02G0220000","Cytokinin dehydrogenase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6YW51]","Similar to cytokinin oxidase1. (Os02t0220000-00)",2,6687558,6689362,"GO:0005615;GO:0019139;GO:0009690;GO:0016614;GO:0050660;GO:0055114;GO:0016491;GO:0005576;GO:0003824","extracellular space;cytokinin dehydrogenase activity;cytokinin metabolic process;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidation-reduction process;oxidoreductase activity;extracellular region;catalytic activity","That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. [EC:1.5.99.12];The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. [ISBN:0387969845];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS03T0664400-02",0.00786983788049498,0.12450410568951902,-2.6294771455889903,"OS03G0664400",null,77.4632978763877,117.043542111692,7.98753602419483,23.4452867948004,"no","OS03G0664400","Expressed protein (With alternative splicing) [Source:UniProtKB/TrEMBL;Acc:Q75GY4]","Similar to Protease inhibitor/seed storage/LTP family protein. (Os03t0664400-01);Expressed protein (With alternative splicing). (Os03t0664400-02)",3,26096042,26096992,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0220600-01",0.00788134787914148,0.12450410568951902,-0.836484887564308,"OS06G0220600",null,380.654482046893,443.553880588755,195.360418993137,266.201504561032,"no","OS06G0220600","Os06g0220600 protein [Source:UniProtKB/TrEMBL;Acc:Q67W00]","RNA recognition motif domain domain containing protein. (Os06t0220600-01)",6,6208419,6214434,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS06T0653900-01",0.007873452993483271,0.12450410568951902,-0.324230142719163,"OS06G0653900",null,1525.46486804749,1577.18334549998,1159.55629499722,1318.60482178652,"no","OS06G0653900","Os06g0653900 protein [Source:UniProtKB/TrEMBL;Acc:Q67WC8]","Similar to Protein transport protein SEC61 gamma subunit. (Os06t0653900-01)",6,26782832,26784850,"GO:0071806;GO:0015450;GO:0006605;GO:0015031;GO:0006886;GO:0005622;GO:0016020;GO:0016021","protein transmembrane transport;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;protein targeting;protein transport;intracellular protein transport;intracellular;membrane;integral component of membrane","The directed movement of a protein across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:vw];Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated. [GOC:mtg_transport, ISBN:0815340729];The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif. [GOC:ma];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0827200-01",7.89027435670509E-3,0.124513611493772,0.340562291340171,"OS02G0827200",null,633.975937883068,675.240652797259,791.29680913179,866.49872445783,"no","OS02G0827200","Os02g0827200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KGD4]","Similar to Sucrose transporter. (Os02t0827200-01)",2,35548813,35553439,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0152600-01",0.00789417601019363,0.124513611493772,-0.606183657673112,"OS06G0152600",null,829.299232799077,923.149490212734,511.14533911482,640.094620136861,"no","OS06G0152600","Os06g0152600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT37]","Hypothetical gene. (Os06t0152600-01)",6,2714450,2715128]
["OS09T0487900-01",0.0078870031435122,0.124513611493772,-0.36639941229522305,"OS09G0487900",null,945.867637227471,1026.24227262022,812.762320600223,717.035021140978,"no","OS09G0487900","Os09g0487900 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0Q4]","Helix-loop-helix DNA-binding domain containing protein. (Os09t0487900-01)",9,18814191,18817005,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS10T0539900-03",0.00790100165562672,0.124556967276939,-0.5421118123659441,"OS10G0539900",null,1176.29566757206,1301.99590801218,767.05257508466,934.951063005146,"no","OS10G0539900","Hexose transporter, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q336W8]","Tonoplast monosaccharide transpoter, Vacuolar sugar transport (Os10t0539900-01);Similar to Hexose transporter. (Os10t0539900-02);Similar to Hexose transporter. (Os10t0539900-03);Similar to Hexose transporter. (Os10t0539900-04)",10,21048303,21052560,"GO:0022891;GO:0022857;GO:0055085;GO:0016021;GO:0016020;GO:0005215;GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0008643;GO:0006810","substrate-specific transmembrane transporter activity;transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane;transporter activity;glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;carbohydrate transport;transport","Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS12T0472800-01",0.007909787645213011,0.12463116665113301,1.07817899458982,"OS12G0472800",null,544.281592973566,733.912477811655,1135.72069769347,1563.01911965336,"no","OS12G0472800","Os12g0472800 protein [Source:UniProtKB/TrEMBL;Acc:Q2QR52]","B repeat unit of collagen binding surface protein (cna) containing protein. (Os12t0472800-01)",12,17009383,17011944]
["OS06T0612800-02",0.007916969379245341,0.12468002498696101,-0.38648820341893503,"OS06G0612800","SAP8",4984.53650809795,4658.4660155111,3951.94888695706,3424.84651338557,"no","OS06G0612800","Zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Source:UniProtKB/Swiss-Prot;Acc:A3BDI8]","Similar to PVPR3 protein. (Os06t0612800-01);Similar to cDNA clone:006-301-C11, full insert sequence. (Os06t0612800-02)",6,24491993,24493907,"GO:0046872;GO:0008270;GO:0003677","metal ion binding;zinc ion binding;DNA binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS04T0603200-03",0.00792199239342233,0.12469485399476501,-0.625093590004364,"OS04G0603200",null,538.082229484186,648.486042053333,351.656014372506,417.68840978009,"no","OS04G0603200","Os04g0603200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JAE4]","Similar to C-terminal zinc-finger (Fragment). (Os04t0603200-01);Similar to OSIGBa0118P15.2 protein. (Os04t0603200-03)",4,30439477,30442817]
["OS04T0592600-01",7.93874037820173E-3,0.124894127721328,-0.277627103289008,"OS04G0592600",null,1674.92346438728,1791.68287521143,1481.1202913219,1378.6453314593,"no","OS04G0592600","Os04g0592600 protein [Source:UniProtKB/TrEMBL;Acc:B7EIW6]","Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein. (Os04t0592600-01)",4,29975251,29977828,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0940000-01",0.00795013573767578,0.125009030909661,-0.7978897868870181,"OS01G0940000","CKX4",120.271962492286,151.311548721337,74.1535850727695,82.0585037818013,"no","OS01G0940000","Cytokinin dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5JLP4]","Cytokinin oxidase/dehydrogenase, Crown root formation (Os01t0940000-01)",1,41300203,41302983,"GO:0005615;GO:0019139;GO:0009690;GO:0016614;GO:0050660;GO:0055114;GO:0016491;GO:0005576;GO:0003824","extracellular space;cytokinin dehydrogenase activity;cytokinin metabolic process;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidation-reduction process;oxidoreductase activity;extracellular region;catalytic activity","That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. [EC:1.5.99.12];The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. [ISBN:0387969845];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS06T0137700-01",0.0079580589465877,0.125069247395138,-0.253193443730037,"OS06G0137700",null,1841.20611493128,1753.72332415629,1518.04883215689,1498.23043722769,"no","OS06G0137700","Os06g0137700 protein [Source:UniProtKB/TrEMBL;Acc:Q5VPH2]","Similar to GDP-mannose 4,6 dehydratase 2. (Os06t0137700-01);Similar to GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose dehydratase 1) (GMD 1). (Os06t0137700-03)",6,2017778,2020679,"GO:0019673;GO:0008446","GDP-mannose metabolic process;GDP-mannose 4,6-dehydratase activity","The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate. [GOC:ai];Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O. [EC:4.2.1.47, RHEA:23823]"]
["OS01T0541800-01",0.00798698743287757,0.12523452514695202,-0.9248230116734231,"OS01G0541800","SWEET2A",1229.22022682794,1477.088927994,594.204385648903,831.33079426563,"no","OS01G0541800","Bidirectional sugar transporter SWEET2a [Source:UniProtKB/Swiss-Prot;Acc:Q5JJY5]","MtN3 and saliva related transmembrane protein family protein. (Os01t0541800-01)",1,19959667,19961939,"GO:0016021;GO:0008643;GO:0005886;GO:0006810;GO:0003676;GO:0008270;GO:0005887;GO:0034219;GO:0051119;GO:0016020","integral component of membrane;carbohydrate transport;plasma membrane;transport;nucleic acid binding;zinc ion binding;integral component of plasma membrane;carbohydrate transmembrane transport;sugar transmembrane transporter activity;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of a sugar from one side of the membrane to the other. A sugar is any member of a class of sweet, water-soluble, crystallizable carbohydrates, which are the monosaccharides and smaller oligosaccharides. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0784700-01",8.012173196256531E-3,0.12523452514695202,-0.33790525168456803,"OS03G0784700",null,6604.19294020073,6609.03351265265,5004.13733671141,5450.02552881529,"no","OS03G0784700","Ferredoxin--NADP reductase, root isozyme, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P41345]","Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR). (Os03t0784700-01);Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR). (Os03t0784700-02)",3,32566499,32569324,"GO:0004324;GO:0009536;GO:0009507;GO:0015979;GO:0055114;GO:0016491","ferredoxin-NADP+ reductase activity;plastid;chloroplast;photosynthesis;oxidation-reduction process;oxidoreductase activity","Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+. [EC:1.18.1.2, GOC:kd];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS04T0623500-02",0.00800522512662285,0.12523452514695202,-0.43451050668387603,"OS04G0623500","GLO3",1496.86113616215,1444.89425895767,1125.01383088509,1051.72268415808,"no","OS04G0623500","Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 [Source:UniProtKB/Swiss-Prot;Acc:Q7FAS1]","Similar to H0215F08.7 protein. (Os04t0623500-01);Similar to Peroxisomal (S)-2-hydroxy-acid oxidase GLO3. (Os04t0623500-02)",4,31688721,31692502,"GO:0016032;GO:0005777;GO:0009853;GO:0010181;GO:0055114;GO:0016491;GO:0019048;GO:0010109;GO:0009854;GO:0052854;GO:0052853;GO:0052852;GO:0008891;GO:0003973;GO:0003824;GO:0034641;GO:0005782;","viral process;peroxisome;photorespiration;FMN binding;oxidation-reduction process;oxidoreductase activity;modulation by virus of host morphology or physiology;regulation of photosynthesis;oxidative photosynthetic carbon pathway;medium-chain-(S)-2-hydroxy-acid oxidase activity;long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity;very-long-chain-(S)-2-hydroxy-acid oxidase activity;glycolate oxidase activity;(S)-2-hydroxy-acid oxidase activity;catalytic activity;cellular nitrogen compound metabolic process;peroxisomal matrix;","A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle. [GOC:bf, GOC:jl, GOC:mah];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:0198506732];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The process in which a virus effects a change in the structure or processes of its host organism. [GOC:bf, GOC:jl, ISBN:0781718325, UniProtKB-KW:KW-0945];Any process that modulates the frequency, rate or extent of photosynthesis. [GOC:sm];The reactions of the C2 pathway bring about the metabolic conversion of two molecules of 2-phosphoglycolate to one molecule of 3-phosphoglycerate, which can be used by the C3 cycle, and one molecule of carbon dioxide (CO2). [ISBN:00943088399];Catalysis of the reaction: medium-chain-(S)-2-hydroxy-acid + O2 = medium-chain-2-oxo acid + hydrogen peroxide. Medium chain refers to a chain length of between 8 and 12 carbons. [EC:1.1.3.15];Catalysis of the reaction: long-chain-(S)-2-hydroxy-acid + O2 = long-chain-2-oxo acid + hydrogen peroxide. Long chain refers to a chain length of 14 to 18 carbons. [EC:1.1.3.15];Catalysis of the reaction: very-long-chain (S)-2-hydroxy-acid + O2 = very-long-chain 2-oxo acid + hydrogen peroxide. Very long chain refers to a chain length of greater than 18 carbons. [EC:1.1.3.15];Catalysis of the reaction: glycolate + O2 = glyoxylate + hydrogen peroxide. [EC:1.1.3.15];Catalysis of the reaction: (S)-2-hydroxy-acid + O2 = 2-oxo acid + hydrogen peroxide. [EC:1.1.3.15];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. [GOC:mah];The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase. [GOC:curators, ISBN:0815316194];"]
["OS05T0426033-01",0.00801738507828012,0.12523452514695202,-0.578048056783608,"OS05G0426033",null,249.827909316049,264.517795556783,176.050850701649,168.493642867913,"no","OS05G0426033","Os05g0426033 protein [Source:UniProtKB/TrEMBL;Acc:B9FPP9]","Hypothetical conserved gene. (Os05t0426033-01)",5,20873834,20875589]
["OS05T0568900-01",0.008002352615289251,0.12523452514695202,0.38002416975379,"OS05G0568900",null,399.547536415052,427.172059315339,550.297657645289,525.565178983442,"no","OS05G0568900","Os05g0568900 protein [Source:UniProtKB/TrEMBL;Acc:Q6AUN5]","Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-). (Os05t0568900-01)",5,28315242,28318639,"GO:0004252;GO:0006508;GO:0008233;GO:0008236;GO:0009735;GO:0010206;GO:0005634;GO:0009507;GO:0009534;GO:0009535;GO:0009579;GO:0031977","serine-type endopeptidase activity;proteolysis;peptidase activity;serine-type peptidase activity;response to cytokinin;photosystem II repair;nucleus;chloroplast;chloroplast thylakoid;chloroplast thylakoid membrane;thylakoid;thylakoid lumen","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl];Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition. [GOC:sm];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The volume enclosed by a thylakoid membrane. [GOC:mah, GOC:pz]"]
["OS08T0225000-00",0.0080175253886609,0.12523452514695202,-0.26506862450587704,"OS08G0225000",null,2085.39351914591,2270.70256108347,1829.44700015056,1795.5182137018,"no","OS08G0225000","Os08g0225000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XD59]","Similar to beta-hydroxyacyl-ACP dehydratase. (Os08t0225000-00)",8,7612317,7614842,"GO:0016836;GO:0006633;GO:0005737","hydro-lyase activity;fatty acid biosynthetic process;cytoplasm","Catalysis of the cleavage of a carbon-oxygen bond by elimination of water. [EC:4.2.1];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS08T0235651-00",0.007978336499685351,0.12523452514695202,-2.73441353431398,"OS08G0235651",null,20.3850783885231,38.0852197461869,4.87852533373483,3.9075477991334,"no","OS08G0235651","Os08g0235651 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDB1]","NB-ARC domain containing protein. (Os08t0235651-00)",8,8235249,8236739,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS08T0299000-01",0.008008238041799001,0.12523452514695202,0.266729149488223,"OS08G0299000",null,3875.4813799999,4304.15908759602,4922.03262645631,4918.70583331466,"no","OS08G0299000","Os08g0299000 protein [Source:UniProtKB/TrEMBL;Acc:Q69LQ9]","Mediator of ErbB2-driven cell motility (Memo), related domain containing protein. (Os08t0299000-01);Mediator of ErbB2-driven cell motility (Memo), related domain containing protein. (Os08t0299000-02)",8,12170867,12177361,"GO:0005634;GO:0005737;GO:0006890;GO:0015031;GO:0030126;GO:0006810;GO:0032886","nucleus;cytoplasm;retrograde vesicle-mediated transport, Golgi to ER;protein transport;COPI vesicle coat;transport;regulation of microtubule-based process","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. [GOC:mah, PMID:11252894];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton. [GOC:mah]"]
["OS08T0357300-01",0.00801776417869328,0.12523452514695202,0.26236151281810605,"OS08G0357300",null,1149.7184211127,1145.64458317584,1378.67125931346,1374.47993834517,"no","OS08G0357300","Os08g0357300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFQ3]","Conserved hypothetical protein. (Os08t0357300-01)",8,16372073,16374276,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS10T0532600-01",7.99567914839951E-3,0.12523452514695202,-0.46408439747109403,"OS10G0532600",null,416.874853045297,412.761435627593,275.148828822645,326.280241227639,"no","OS10G0532600","Os10g0532600 protein [Source:UniProtKB/TrEMBL;Acc:Q8LN40]","Protein of unknown function DUF623, plant domain containing protein. (Os10t0532600-01)",10,20714505,20715564]
["OS11T0110066-01",0.00801393677924443,0.12523452514695202,0.34390574641321,"OS11G0110066",null,679.331670351042,668.400184001691,904.399789132347,806.1252607566,"no","OS11G0110066","Os11g0110066 protein [Source:UniProtKB/TrEMBL;Acc:B7F8Y2]","Hypothetical conserved gene. (Os11t0110066-01)",11,481162,484697]
["OS12T0204500-01",0.00799102029265373,0.12523452514695202,-0.31509326247199904,"OS12G0204500",null,1475.47373625407,1405.8042516162,1088.616842756,1227.35160266174,"no","OS12G0204500","Os12g0204500 protein [Source:UniProtKB/TrEMBL;Acc:Q2QW75]","Protein of unknown function DUF579, plant family protein. (Os12t0204500-01)",12,5455305,5456824,"GO:0045492","xylan biosynthetic process","The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668]"]
["OS01T0243700-02",8.03556217802881E-3,0.125259009970064,-0.548292660291778,"OS01G0243700",null,1643.00978638762,2042.92953611302,1239.14543476865,1281.40646628179,"no","OS01G0243700","Os01g0243700 protein [Source:UniProtKB/TrEMBL;Acc:Q5NA70]","Similar to Beta-1,3-glucanase-like protein. (Os01t0243700-01);Similar to Beta-1,3-glucanase-like protein. (Os01t0243700-02)",1,7928090,7929762]
["OS01T0647150-00",0.008025013815376661,0.125259009970064,-0.48682521315624405,"OS01G0647150",null,1394.78100643891,1348.99121155574,923.825717101766,1034.11285640905,"no","OS01G0647150","Os01g0647150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5U4]","Hypothetical protein. (Os01t0647150-00)",1,26078097,26082210]
["OS02T0654500-01",8.04393092305789E-3,0.125259009970064,0.288165562055514,"OS02G0654500",null,870.442847189936,896.546659430507,1050.83435688648,1106.81291410453,"no","OS02G0654500","Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:Q6H7H9]","Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein. (Os02t0654500-01)",2,26404870,26409438,"GO:0016579;GO:0004843;GO:0005737;GO:0006511;GO:0036459;GO:0005622;GO:0006508;GO:0016787;GO:0008234;GO:0008233","protein deubiquitination;thiol-dependent ubiquitin-specific protease activity;cytoplasm;ubiquitin-dependent protein catabolic process;thiol-dependent ubiquitinyl hydrolase activity;intracellular;proteolysis;hydrolase activity;cysteine-type peptidase activity;peptidase activity","The removal of one or more ubiquitin groups from a protein. [GOC:ai];Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. [GOC:jh2, ISBN:0120793709];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. [EC:3.4.19.12, GOC:bf, GOC:ka];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0120000-01",0.00803690781190797,0.125259009970064,0.45224212129800806,"OS03G0120000",null,279.275573922766,301.593767179264,380.524976031317,414.20006670814,"no","OS03G0120000","Os03g0120000 protein [Source:UniProtKB/TrEMBL;Acc:C7IZY3]","Conserved hypothetical protein. (Os03t0120000-01)",3,1099335,1102869,"GO:0006278;GO:0003964","RNA-dependent DNA biosynthetic process;RNA-directed DNA polymerase activity","A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. [GOC:mah, ISBN:0198506732];Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. [EC:2.7.7.49]"]
["OS04T0368800-00",0.00804150597452519,0.125259009970064,-1.086555800444,"OS04G0368800",null,129.445247767122,121.460971082434,45.8581381371074,72.2896342839678,"no","OS04G0368800","Os04g0368800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W972]","Similar to H0607F01.6 protein. (Os04t0368800-00)",4,17906318,17909802,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0005509;GO:0006468;GO:0005524;GO:0004672","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS06T0268700-01",0.00802974976321351,0.125259009970064,-0.32778013788187904,"OS06G0268700",null,3269.07111702354,3642.58933571937,2648.20961883759,2858.735406623,"no","OS06G0268700","Os06g0268700 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z6M6]","Peptidase A1 domain containing protein. (Os06t0268700-01)",6,8955691,8959653,"GO:0030163;GO:0006508;GO:0004190;GO:0016787;GO:0008233;GO:0016020;GO:0016021","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;hydrolase activity;peptidase activity;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0216500-00",0.00805378450389589,0.125348560449836,0.5006248011952961,"OS01G0216500",null,269.415555467459,248.659209845079,374.399947642312,358.585783922001,"no","OS01G0216500","Os01g0216500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0B8]","Lipase, GDSL domain containing protein. (Os01t0216500-00)",1,6365063,6367057]
["OS12T0105800-01",0.0080653383920293,0.125400620128895,-0.24601570305154302,"OS12G0105800",null,2564.0760972577,2420.59053296968,2109.7079477233,2093.47227923697,"no","OS12G0105800","Os12g0105800 protein [Source:UniProtKB/TrEMBL;Acc:Q2QYU9]","Tyrosine protein kinase domain containing protein. (Os12t0105800-01)",12,306553,310206,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0018108;GO:0004713;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;peptidyl-tyrosine phosphorylation;protein tyrosine kinase activity;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0411700-02",0.008063266348065461,0.125400620128895,-0.811637295317405,"OS12G0411700",null,127.740428411156,152.147341082789,84.2689076762101,75.1929244693318,"no","OS12G0411700","ABC-2 type transporter family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QT07]","ABC transporter-like domain containing protein. (Os12t0411700-01);Similar to white-brown-complex ABC transporter family. (Os12t0411700-02)",12,12568930,12587004,"GO:0042626;GO:0016021;GO:0005886;GO:0055085;GO:0016887;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;integral component of membrane;plasma membrane;transmembrane transport;ATPase activity;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0669475-00",0.00808617383243731,0.12548927581480102,-0.5471839674514091,"OS04G0669475",null,347.565586524319,320.121711920652,204.898064016863,252.036833044104,"no","OS04G0669475","Os04g0669475 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WG54]","Conserved hypothetical protein. (Os04t0669475-00)",4,34142529,34143723]
["OS04T0692400-01",0.00808261531916692,0.12548927581480102,-0.40211950704446103,"OS04G0692400",null,556.51264000668,577.454277773266,461.508496571315,396.61610161204,"no","OS04G0692400","Os04g0692400 protein [Source:UniProtKB/TrEMBL;Acc:B9FDS3]","Similar to ankyrin-like protein. (Os04t0692400-01)",4,35435202,35439077,"GO:0032259;GO:0008757;GO:0005737;GO:0008168;GO:0016020;GO:0016021","methylation;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;methyltransferase activity;membrane;integral component of membrane","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0191200-01",0.00808747002092639,0.12548927581480102,-0.558230241897385,"OS07G0191200",null,511.547088444325,521.598967296564,356.6527234782,344.992664260634,"no","OS07G0191200","Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:Q8L6I2]","Plasma membrane H+ ATPase (EC 3.6.3.6). (Os07t0191200-01);Similar to Plasma membrane H+-ATPase. (Os07t0191200-02)",7,4914656,4920788,"GO:0006754;GO:0008553;GO:0015992;GO:1902600;GO:0006810;GO:0016887;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","ATP biosynthetic process;hydrogen-exporting ATPase activity, phosphorylative mechanism;proton transport;hydrogen ion transmembrane transport;transport;ATPase activity;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators, ISBN:0198506732];Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. [EC:3.6.3.6];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0481400-01",0.008086241507592061,0.12548927581480102,-0.46203409224498104,"OS10G0481400",null,607.350829789179,654.14663195665,417.754408528383,498.044792346553,"no","OS10G0481400","Os10g0481400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVT9]","Similar to Zinc finger, C3HC4 type family protein, expressed. (Os10t0481400-01);Similar to Zinc finger, C3HC4 type family protein, expressed. (Os10t0481400-02)",10,18150730,18152862,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0915350-00",0.00810093944825279,0.12561170575563702,0.88961686246004,"OS01G0915350",null,53.9279784333106,74.8752022040951,116.698025227257,121.933571819572,"no","OS01G0915350","Os01g0915350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KEA5]","Hypothetical protein. (Os01t0915350-00)",1,39881691,39890325]
["OS06T0698674-01",0.0081035831383988,0.12561170575563702,0.24928562348549,"OS06G0698674",null,3593.24129023954,3899.79617188316,4463.45954037341,4442.90268433698,"no","OS06G0698674","Os06g0698674 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z4V2]","eIF4-gamma/eIF5/eIF2-epsilon domain containing protein. (Os06t0698674-01)",6,29234952,29238556,"GO:0006413;GO:0003743","translational initiation;translation initiation factor activity","The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732]"]
["OS07T0103100-01",0.00811335029728364,0.125699329757916,0.47242071455147705,"OS07G0103100",null,307.814683666699,288.212473754928,380.274011184357,446.675231988522,"no","OS07G0103100","Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q0D972]","Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2. (Os07t0103100-01)",7,191053,196429,"GO:0035235;GO:0004970;GO:0006810;GO:0006811;GO:0016020;GO:0016021","ionotropic glutamate receptor signaling pathway;ionotropic glutamate receptor activity;transport;ion transport;membrane;integral component of membrane","A series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription. [GOC:signaling, ISBN:0198506732];Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0587100-04",0.00811767942838045,0.125702656814941,-0.416204085445731,"OS03G0587100",null,538.389336541954,528.148031794703,372.871735312551,426.384738066191,"no","OS03G0587100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6F2U6]","Similar to decarboxylase family protein. (Os03t0587100-01);Similar to decarboxylase family protein. (Os03t0587100-02);Similar to decarboxylase family protein. (Os03t0587100-03);Expressed protein. (Os03t0587100-04)",3,21685293,21690776]
["OS03T0832300-01",0.00813709501950889,0.12587570989166402,-0.276594994700366,"OS03G0832300",null,1479.95669100678,1591.34458723256,1240.12113983539,1295.35209541272,"no","OS03G0832300","Huntingtin interacting protein K, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7Y139]","Similar to huntingtin interacting protein K. (Os03t0832300-01)",3,34957024,34959386,"GO:0005829","cytosol","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS11T0229600-01",0.008136166825396841,0.12587570989166402,6.45810100685844,"OS11G0229600",null,0,1.01012335061757,33.7268021486017,55.082105595042,"no","OS11G0229600","Os11g0229600 protein [Source:UniProtKB/TrEMBL;Acc:Q0ITP4]","Hypothetical gene. (Os11t0229600-01);Hypothetical protein. (Os11t0229600-02)",11,6891118,6897208]
["OS11T0557000-01",0.00814563405960994,0.12594403430627701,0.310146526454499,"OS11G0557000",null,979.503016568534,1069.47414368346,1212.80139796648,1327.58936475557,"no","OS11G0557000","NA","Phytosulfokine family protein. (Os11t0557000-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0806200-01",0.00816516684180955,0.126054662633131,-0.5304824272522041,"OS01G0806200",null,284.371843519897,314.9750606036,194.165308282646,220.776450651037,"no","OS01G0806200","F-box family protein-like [Source:UniProtKB/TrEMBL;Acc:Q5VR67]","Cyclin-like F-box domain containing protein. (Os01t0806200-01)",1,34183076,34186865]
["OS05T0567400-01",0.00816493678215464,0.126054662633131,0.32196194228789,"OS05G0567400",null,2056.85440940198,1892.93835441183,2594.78188429242,2342.57490558047,"no","OS05G0567400","Putative rRNA methyltransferase [Source:UniProtKB/TrEMBL;Acc:Q0DFV9]","Ribosomal RNA methyltransferase J domain containing protein. (Os05t0567400-01)",5,28245031,28249577,"GO:0031167;GO:0000453;GO:0008649;GO:0000463;GO:0005730;GO:0030687;GO:0001510;GO:0032259;GO:0042254;GO:0006364;GO:0008168;GO:0005634;GO:0016740;GO:0016435;GO:0000466;GO:0008650","rRNA methylation;enzyme-directed rRNA 2'-O-methylation;rRNA methyltransferase activity;maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);nucleolus;preribosome, large subunit precursor;RNA methylation;methylation;ribosome biogenesis;rRNA processing;methyltransferase activity;nucleus;transferase activity;rRNA (guanine) methyltransferase activity;maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);rRNA (uridine-2'-O-)-methyltransferase activity","The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule. [GOC:mah];The addition of methyl groups to the 2'-oxygen atom of nucleotide residues in an rRNA molecule during ribosome biogenesis where the methylase specifies the site that becomes methylated without using a guide RNA. [GOC:curators, ISBN:1555811337];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. [GOC:mah];Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. [GOC:curators];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit. [PMID:10567516];Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylguanine. [EC:2.1.1.-];Any process involved in the maturation of an rRNA molecule originally produced as part of a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410];Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing 2'-O-methyluridine. [GOC:mah]"]
["OS05T0585400-01",0.00815692980936325,0.126054662633131,-0.296616210312004,"OS05G0585400",null,997.140985206251,1079.76744631757,852.766228336849,838.169002914113,"no","OS05G0585400","Probable protein ABIL4 [Source:UniProtKB/Swiss-Prot;Acc:Q6I588]","Similar to Protein ABIL1. (Os05t0585400-01)",5,29137464,29140080,"GO:0005856;GO:0005737","cytoskeleton;cytoplasm","Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS04T0546800-01",0.00820252665949259,0.126318765036382,0.471660650351708,"OS04G0546800",null,241.563178903999,241.844340080338,317.077019589702,353.266483709284,"no","OS04G0546800","Development related ERF protein [Source:UniProtKB/TrEMBL;Acc:Q0JB99]","Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os04t0546800-01)",4,27371324,27372855,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0501300-01",0.00820294677376872,0.126318765036382,-0.6554011655917581,"OS05G0501300",null,2103.74008969558,2584.64829142365,1360.88171607335,1615.77101494166,"no","OS05G0501300","'putative 1,4-benzoquinone reductase [Source:UniProtKB/TrEMBL;Acc:Q60EJ3]","Similar to Flavoprotein wrbA (Trp repressor binding protein). (Os05t0501300-01)",5,24669675,24673123,"GO:0005737;GO:0005886;GO:0003955;GO:0010181;GO:0055114;GO:0016491","cytoplasm;plasma membrane;NAD(P)H dehydrogenase (quinone) activity;FMN binding;oxidation-reduction process;oxidoreductase activity","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone. [EC:1.6.5.2];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS06T0274800-01",0.00819620927527696,0.126318765036382,-1.43011019917361,"OS06G0274800",null,1388.46799414026,2075.1258972322,506.54674565994,778.801762920245,"no","OS06G0274800","Peroxidase 11 [Source:Projected from Arabidopsis thaliana (AT1G68850) UniProtKB/Swiss-Prot;Acc:Q96519]","Similar to Peroxidase 11 precursor (EC 1.11.1.7) (Atperox P11) (ATP23a/ATP23b). (Os06t0274800-01)",6,9326113,9328206,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS06T0591400-01",8.193578964401111E-3,0.126318765036382,2.61148552518589,"OS06G0591400",null,160.022865349906,87.4930723898888,451.751445903846,1060.89922746472,"no","OS06G0591400","Os06g0591400 protein [Source:UniProtKB/TrEMBL;Acc:Q69XE8]","Conserved hypothetical protein. (Os06t0591400-01)",6,23232535,23233439]
["OS10T0188100-03",0.008198848056504261,0.126318765036382,0.97726665265243,"OS10G0188100",null,181.433790357225,238.101400115087,404.805724272823,421.146584287965,"no","OS10G0188100","Mutant TFIIF-alpha, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q53QT1]","Conserved hypothetical protein. (Os10t0188100-01);Similar to transcription initiation factor IIF, alpha subunit. (Os10t0188100-02);Transcription initiation factor IIF, alpha subunit family protein. (Os10t0188100-03);Conserved hypothetical protein. (Os10t0188100-04)",10,6079970,6087844,"GO:0016020;GO:0016021;GO:0003743;GO:0006413;GO:0032968;GO:0006367;GO:0005634;GO:0003677","membrane;integral component of membrane;translation initiation factor activity;translational initiation;positive regulation of transcription elongation from RNA polymerase II promoter;transcription initiation from RNA polymerase II promoter;nucleus;DNA binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. [GOC:mah, GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS02T0748800-00",0.00821838345135499,0.126395192545811,-0.944474840634635,"OS02G0748800",null,120.271962492286,118.372980292202,49.7609584040953,74.2434081835345,"no","OS02G0748800","Glutaredoxin-like [Source:UniProtKB/TrEMBL;Acc:Q6YUW0]","Thioredoxin fold domain containing protein. (Os02t0748800-00)",2,31461228,31462971,"GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055","cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity","The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS03T0297600-01",8.236321977397711E-3,0.126395192545811,-0.365969101873831,"OS03G0297600",null,1835.6763088865,1765.30140174893,1294.76062357323,1499.40892961095,"no","OS03G0297600","Os03g0297600 protein [Source:UniProtKB/TrEMBL;Acc:Q10MS2]","Streptomyces cyclase/dehydrase family protein. (Os03t0297600-01)",3,10418661,10419833]
["OS03T0742900-01",0.008230115671762031,0.126395192545811,-0.44330446291248304,"OS03G0742900","IAA13",3622.74152504778,3987.67468852258,2580.55774518746,3016.50877471529,"no","OS03G0742900","Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q10D34]","Aux /IAA protein. (Os03t0742900-01);Similar to cDNA clone:006-206-C11, full insert sequence. (Os03t0742900-03)",3,30480720,30483289,"GO:0005634;GO:0009734;GO:0006355;GO:0006351","nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0105300-02",0.008247864988166941,0.126395192545811,0.669139251285323,"OS04G0105300",null,431.805545594729,328.968388238612,625.242849401089,584.482022995376,"no","OS04G0105300","Os04g0105300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JFG5]","Protein of unknown function DUF1295 family protein. (Os04t0105300-01);Similar to B0616E02-H0507E05.2 protein. (Os04t0105300-02)",4,354021,355463,"GO:0016020;GO:0016021;GO:0016627;GO:0055114;GO:0006629;GO:0005737","membrane;integral component of membrane;oxidoreductase activity, acting on the CH-CH group of donors;oxidation-reduction process;lipid metabolic process;cytoplasm","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS04T0450800-01",0.008239366974789051,0.126395192545811,-0.28023550212811504,"OS04G0450800",null,6689.09188484479,6071.9333486817,5412.88565894496,5095.26462888885,"no","OS04G0450800","Os04g0450800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBB0]","Similar to Histone H3. (Os04t0450800-01);Similar to Histone H3. (Os04t0450800-02)",4,22461303,22464042,"GO:0005694;GO:0000786;GO:0046982;GO:0003677;GO:0005634","chromosome;nucleosome;protein heterodimerization activity;DNA binding;nucleus","A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS05T0358400-02",0.008218208180998261,0.126395192545811,0.258167877247722,"OS05G0358400",null,1663.20641428792,1587.96912841635,1897.74072487834,1990.53177910375,"no","OS05G0358400","Os05g0358400 protein [Source:UniProtKB/TrEMBL;Acc:Q6L483]","Butirosin biosynthesis, BtrG-like domain containing protein. (Os05t0358400-01);Similar to predicted protein. (Os05t0358400-02)",5,17014645,17018325,"GO:0005829;GO:0009507;GO:0009570","cytosol;chloroplast;chloroplast stroma","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS07T0475000-01",0.00823424682819222,0.126395192545811,-1.39702466736002,"OS07G0475000",null,62.1744890849954,43.2318710632392,23.4169216019272,16.6070781463169,"no","OS07G0475000","Os07g0475000 protein [Source:UniProtKB/TrEMBL;Acc:Q0D6I9]","Conserved hypothetical protein. (Os07t0475000-01)",7,17136166,17144612]
["OS10T0392500-00",0.00824608744831458,0.126395192545811,0.356492848133441,"OS10G0392500",null,457.586407884417,468.352517765171,606.85639769185,578.63220320789,"no","OS10G0392500","Os10g0392500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XTM5]","Similar to RNA methyltransferase, TrmH family protein, expressed. (Os10t0392500-00)",10,13080825,13084158]
["OS10T0439100-00",0.00825341742370032,0.126395192545811,-1.24263448797591,"OS10G0439100","EXPA27",90.932178599514,61.7598158046274,27.3568059643037,37.1708684255385,"no","OS10G0439100","Putative expansin-A27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XE35]","Similar to cDNA clone:002-180-G03, full insert sequence. (Os10t0439100-00)",10,15751894,15753575,"GO:0005618;GO:0005576;GO:0009664;GO:0016020;GO:0071555","cell wall;extracellular region;plant-type cell wall organization;membrane;cell wall organization","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS11T0660400-02",0.008250128677850351,0.126395192545811,0.5856246961945331,"OS11G0660400",null,391.204130087321,317.651376606401,498.729169662408,565.042248275282,"no","OS11G0660400",null,"Hypothetical protein. (Os11t0660400-01);Similar to Plasma membrane H+-ATPase. (Os11t0660400-02)",11,26503050,26507799,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0235800-01",8.24908500127358E-3,0.126395192545811,0.5198370002903211,"OS12G0235800",null,600.851290983193,664.398076313266,822.72467146612,991.381324482955,"no","OS12G0235800","Argininosuccinate synthase, chloroplast, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QVC1]","Similar to Argininosuccinate synthase (Fragment). (Os12t0235800-01);Similar to Argininosuccinate synthase. (Os12t0235800-02);Similar to Argininosuccinate synthase. (Os12t0235800-03)",12,7430623,7434681,"GO:0005737;GO:0004055;GO:0006526;GO:0005524;GO:0000053;GO:0000050;","cytoplasm;argininosuccinate synthase activity;arginine biosynthetic process;ATP binding;argininosuccinate metabolic process;urea cycle;","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate. [EC:6.3.4.5];The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [CHEBI:29016, ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The chemical reactions and pathways involving argininosuccinate, 2-(N(omega)-arginino)succinate, an intermediate in the ornithine-urea cycle, where it is synthesized from citrulline and aspartate. [ISBN:0198506732];The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate. [GOC:pde, GOC:vw, ISBN:0198506732];"]
["OS05T0564400-02",0.0082775184632558,0.126700773591879,-0.26715688755258704,"OS05G0564400",null,1586.16406134735,1690.34359215636,1329.92616172991,1392.70587230342,"no","OS05G0564400","Os05g0564400 protein [Source:UniProtKB/TrEMBL;Acc:Q6AUF8]","Similar to GTP-binding protein. (Os05t0564400-02)",5,28092844,28094569,"GO:0005768;GO:0005525;GO:0003924","endosome;GTP binding;GTPase activity","A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS05T0531400-01",0.00829703172977236,0.126784535615889,-0.511166445471227,"OS05G0531400",null,307.814683666699,273.801850067181,201.970948816622,206.123146404287,"no","OS05G0531400","Os05g0531400 protein [Source:UniProtKB/TrEMBL;Acc:Q75K53]","Pollen Ole e 1 allergen and extensin domain containing protein. (Os05t0531400-01)",5,26377197,26378671,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0181000-03",0.0083034966557578,0.126784535615889,-0.8768021626572021,"OS07G0181000",null,578.845077738228,603.590343927306,377.042129154332,266.880488666087,"no","OS07G0181000","Plastidial pyruvate kinase 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G22960) UniProtKB/Swiss-Prot;Acc:Q9LIK0]","Similar to Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40). (Os07t0181000-01);Similar to Pyruvate kinase. (Os07t0181000-02);Similar to Pyruvate kinase. (Os07t0181000-03);Similar to Pyruvate kinase. (Os07t0181000-04)",7,4266881,4271517,"GO:0006096;GO:0030955;GO:0004743;GO:0016310;GO:0016301;GO:0000287;GO:0003824;GO:0016740;GO:0009570;GO:0006629;GO:0010431;GO:0046686;GO:0009507","glycolytic process;potassium ion binding;pyruvate kinase activity;phosphorylation;kinase activity;magnesium ion binding;catalytic activity;transferase activity;chloroplast stroma;lipid metabolic process;seed maturation;response to cadmium ion;chloroplast","The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Interacting selectively and non-covalently with potassium (K+) ions. [GOC:mah];Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate. [EC:2.7.1.40];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination. [PMID:16096971];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS10T0370600-01",0.008303739714826971,0.126784535615889,2.81283633071847,"OS10G0370600",null,4.75114478007219,6.36808336487236,21.2110239106907,56.9198621661121,"no","OS10G0370600","Os10g0370600 protein [Source:UniProtKB/TrEMBL;Acc:Q0IY42]","Hypothetical protein. (Os10t0370600-01)",10,11672863,11673589,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0270700-01",0.00828850986621554,0.126784535615889,-0.5816988310509,"OS11G0270700",null,328.070908717534,333.377580765988,208.45997209311,233.504370776846,"no","OS11G0270700","Os11g0270700 protein [Source:UniProtKB/TrEMBL;Acc:Q0ITC7]","Hypothetical protein. (Os11t0270700-01)",11,9429458,9433453]
["OS12T0170700-01",0.008303049319754181,0.126784535615889,0.29377012163341804,"OS12G0170700",null,1232.27798858622,1114.76467527352,1476.24176598816,1400.85588598932,"no","OS12G0170700","Os12g0170700 protein [Source:UniProtKB/TrEMBL;Acc:Q0IPS3]","Conserved hypothetical protein. (Os12t0170700-01)",12,3592239,3597468,"GO:1904812;GO:0051391;GO:0002101;GO:1990883;GO:0051392;GO:0000049;GO:0030686;GO:0005730;GO:0008033;GO:0006364;GO:0016746;GO:0008080;GO:0005634;GO:0005524;GO:0000166;GO:0016740;GO:0000154;GO:0016072;GO:0034470;GO:0042274","rRNA acetylation involved in maturation of SSU-rRNA;tRNA acetylation;tRNA wobble cytosine modification;rRNA cytidine N-acetyltransferase activity;tRNA N-acetyltransferase activity;tRNA binding;90S preribosome;nucleolus;tRNA processing;rRNA processing;transferase activity, transferring acyl groups;N-acetyltransferase activity;nucleus;ATP binding;nucleotide binding;transferase activity;rRNA modification;rRNA metabolic process;ncRNA processing;ribosomal small subunit biogenesis","Any rRNA acetylation that is involved in maturation of SSU-rRNA. [GO_REF:0000060, GOC:TermGenie, PMID:25402480];The modification of tRNA structure by addition of an acetyl group to tRNA. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. [GOC:ai];The process in which a cytosine in position 34 of a tRNA is post-transcriptionally modified. [GOC:hjd, ISBN:155581073X];Catalysis of the reaction: acetyl-CoA + cytidine = CoA + N4-acetylcytidine. The cytidine is within the polynucleotide chain of an rRNA. [PMID:25402480];Catalysis of the reaction: acetyl-CoA + cytidine = CoA + N4-acetylcytidine. The cytidine is within the polynucleotide chain of a tRNA. [PMID:15037780];Interacting selectively and non-covalently with transfer RNA. [GOC:ai];A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12150911, PMID:12957375, PMID:15120992];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. [GOC:curators];The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. [ISBN:0198506732];Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. [GOC:jl]"]
["OS04T0583700-00",0.00831915889825935,0.126829811706397,0.770591221003265,"OS04G0583700",null,101.925391942615,102.933026341046,200.995243749875,148.486816367069,"no","OS04G0583700","Os04g0583700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDY2]","Zinc finger, FYVE-type domain containing protein. (Os04t0583700-00)",4,29493928,29498951,"GO:0046872;GO:0005773;GO:0005886","metal ion binding;vacuole;plasma membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS07T0110200-01",0.00831658877655989,0.126829811706397,0.287616188564055,"OS07G0110200",null,1085.53075473504,1078.3153289802,1380.64597047194,1260.59159684589,"no","OS07G0110200","Os07g0110200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X1R2]","Similar to GTP-binding protein-related. (Os07t0110200-01)",7,559367,560890,"GO:0005730;GO:0042254;GO:0005634;GO:0005525","nucleolus;ribosome biogenesis;nucleus;GTP binding","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai]"]
["OS12T0225100-02",0.0083130668593219,0.126829811706397,-0.448792357322898,"OS12G0225100",null,1464.13731073469,1242.88496591715,1006.30151634189,977.014268238813,"no","OS12G0225100","Os12g0225100 protein [Source:UniProtKB/TrEMBL;Acc:C7JA61]","Nucleotide-binding, alpha-beta plait domain containing protein. (Os12t0225100-01);Similar to RNA binding protein. (Os12t0225100-02)",12,6799607,6802817,"GO:0030529;GO:0003723;GO:0006396;GO:0005634;GO:0003676;","intracellular ribonucleoprotein complex;RNA binding;RNA processing;nucleus;nucleic acid binding;","An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];"]
["OS02T0806400-01",0.00832785252136832,0.126899027547554,-0.268733648987366,"OS02G0806400",null,2046.50692859984,2215.82047333413,1721.21210793415,1816.72343991672,"no","OS02G0806400","Os02g0806400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQY4]","Similar to Gata zn finger family protein. (Os02t0806400-01);Hypothetical conserved gene. (Os02t0806400-02)",2,34410557,34413403,"GO:0003700;GO:0043565;GO:0006355;GO:0008270;","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;zinc ion binding;","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];"]
["OS04T0356600-01",0.00834358882144352,0.127075436526791,-0.443096195947324,"OS04G0356600",null,442.008387003452,428.198147192487,319.055556826258,321.028623948433,"no","OS04G0356600","Os04g0356600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9H2]","Similar to OSIGBa0105P02.3 protein. (Os04t0356600-01)",4,17044349,17046921,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0591200-01",0.008348266155589111,0.12708332216520102,3.02152679132592,"OS06G0591200",null,245.640194581703,83.3757513362469,880.085970205764,1791.61066590266,"no","OS06G0591200","Os06g0591200 protein [Source:UniProtKB/TrEMBL;Acc:Q69X78]","Conserved hypothetical protein. (Os06t0591200-01)",6,23227138,23228388]
["OS03T0271200-01",0.0083573132321893,0.127094392170158,0.6291236434851051,"OS03G0271200","TOC75",221.764779827188,176.262568912787,324.331351994862,291.267783759541,"no","OS03G0271200","Protein TOC75, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Q83]","Similar to Chloroplastic outer envelope membrane protein (OEP75) precursor (Outer membrane protein). (Os03t0271200-01);Similar to Protein TOC75, chloroplastic. (Os03t0271200-02)",3,9068392,9073951,"GO:0071806;GO:0015450;GO:0006886;GO:0019867;GO:0005622;GO:0015031;GO:0009536;GO:0009507;GO:0006810;GO:0009707;GO:0009527;GO:0016020;GO:0016021","protein transmembrane transport;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;intracellular protein transport;outer membrane;intracellular;protein transport;plastid;chloroplast;transport;chloroplast outer membrane;plastid outer membrane;membrane;integral component of membrane","The directed movement of a protein across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:vw];Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated. [GOC:mtg_transport, ISBN:0815340729];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope. [GOC:tb];The outer, i.e. cytoplasm-facing, lipid bilayer of the plastid envelope. [GOC:lr];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0167000-01",0.00835335559362396,0.127094392170158,0.343250935472035,"OS08G0167000",null,875.653840162032,766.982880807532,1014.39001558931,1069.47870013803,"no","OS08G0167000","ABC transporter G family member 14 [Source:Projected from Arabidopsis thaliana (AT1G31770) UniProtKB/Swiss-Prot;Acc:Q9C6W5]","ABC transporter-like domain containing protein. (Os08t0167000-01)",8,3928463,3933577,"GO:0042626;GO:0016021;GO:0005886;GO:0055085;GO:0016887;GO:0005524;GO:0000166;GO:0016020;GO:0010222;GO:0010588","ATPase activity, coupled to transmembrane movement of substances;integral component of membrane;plasma membrane;transmembrane transport;ATPase activity;ATP binding;nucleotide binding;membrane;stem vascular tissue pattern formation;cotyledon vascular tissue pattern formation","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Vascular tissue pattern formation as it occurs in the stem of vascular plants. [GOC:tb];Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants. [PMID:10559439]"]
["OS01T0132500-01",0.008382214743394,0.127409664099589,-0.77605181612029,"OS01G0132500",null,115.175692895155,125.578292136076,66.3479445387937,74.2434081835345,"no","OS01G0132500","Os01g0132500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXP0]","Protein of unknown function DUF1639 domain containing protein. (Os01t0132500-01)",1,1781075,1782386]
["OS01T0674500-03",0.00842801304975942,0.127626318767796,-0.423841820721501,"OS01G0674500","TULP1",732.552489847773,853.301281286094,566.375986983023,615.777963355561,"no","OS01G0674500","Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B7EHT3]","Similar to cDNA clone:J023048A08, full insert sequence. (Os01t0674500-01);Similar to cDNA clone:J023048A08, full insert sequence. (Os01t0674500-02);Similar to cDNA clone:J023048A08, full insert sequence. (Os01t0674500-03)",1,27716240,27721217,"GO:0035091","phosphatidylinositol binding","Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, ISBN:0198506732, PMID:11395417]"]
["OS02T0324400-01",0.0084298871194492,0.127626318767796,-0.659864484860741,"OS02G0324400","FOS1",251.75571809826,223.364667160069,131.720184010841,169.001442312519,"no","OS02G0324400","Inactive protein FON2 SPARE1 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z6T2]","Secreted protein with a CLE domain, Maintenance of the floral meristem (FM) and the vegetative shoot apical meristem (SAM) (Os02t0324400-01)",2,13014487,13015524,"GO:0030154;GO:0007275;GO:0005576","cell differentiation;multicellular organism development;extracellular region","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0321300-01",0.0084222536578838,0.127626318767796,-0.560724297906478,"OS03G0321300",null,309.853191505551,296.447115862211,182.456847481683,228.591546249304,"no","OS03G0321300","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10M69]","Cyclin-like F-box domain containing protein. (Os03t0321300-01)",3,11613231,11614737,"GO:0009506;GO:0009914;GO:0009736","plasmodesma;hormone transport;cytokinin-activated signaling pathway","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:tb];A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474]"]
["OS03T0711300-02",8.42829370539145E-3,0.127626318767796,-0.32471528195265703,"OS03G0711300",null,839.195570917468,872.022903717874,651.567253665295,714.765314531751,"no","OS03G0711300","Os03g0711300 protein [Source:UniProtKB/TrEMBL;Acc:Q10E16]","Serine/threonine protein kinase domain containing protein. (Os03t0711300-01);Similar to Protein kinase. (Os03t0711300-02)",3,28708663,28716214,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016740;GO:0005622;GO:0035556;GO:0018107;GO:0018105;GO:0048015;GO:0046854","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity;intracellular;intracellular signal transduction;peptidyl-threonine phosphorylation;peptidyl-serine phosphorylation;phosphatidylinositol-mediated signaling;phosphatidylinositol phosphorylation","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. [RESID:AA0038];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, GOC:ceb, ISBN:0198506732];The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732]"]
["OS05T0472400-00",0.0084263696495748,0.127626318767796,0.9577238623055371,"OS05G0472400",null,318.735857886096,234.987162719522,469.314137105291,606.150635601155,"no","OS05G0472400","Os05g0472400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNQ3]","Similar to Zinc transporter 9. (Os05t0472400-00)",5,23201237,23212773,"GO:0005886;GO:0071577;GO:0005385;GO:0046873;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0006829","plasma membrane;zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;metal ion transmembrane transporter activity;metal ion transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;zinc II ion transport","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS07T0680900-01",0.00840633662468313,0.127626318767796,0.43618075789311905,"OS07G0680900",null,543.475428884019,633.920538947023,758.418348933277,834.619285480296,"no","OS07G0680900","Os07g0680900 protein [Source:UniProtKB/TrEMBL;Acc:Q0D3L1]","Similar to Ribosomal protein S6 kinase. (Os07t0680900-01)",7,28857663,28859508,"GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005840;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;ribosome;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0478000-02",0.00841151663886548,0.127626318767796,-1.85147821687872,"OS08G0478000",null,1173.71097123852,2194.60151464256,372.11637169205,561.270945810917,"no","OS08G0478000","Os08g0478000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XH52]","Similar to mucin-2. (Os08t0478000-01);Conserved hypothetical protein. (Os08t0478000-02)",8,23575567,23576307,"GO:0046983;GO:0007275","protein dimerization activity;multicellular organism development","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS09T0413500-02",8.424496457949961E-3,0.127626318767796,-0.340534664471136,"OS09G0413500",null,2050.9392115605,2289.73599858044,1788.62473770285,1639.41732784529,"no","OS09G0413500","Os09g0413500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLP8]","Similar to 60S ribosomal protein L34. (Os09t0413500-01);Non-protein coding transcript. (Os09t0413500-02)",9,14691187,14693114,"GO:0005840;GO:0005622;GO:0006412;GO:0003735","ribosome;intracellular;translation;structural constituent of ribosome","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah]"]
["OS06T0224100-01",0.00843701853225271,0.12767102040484601,-0.759848711198234,"OS06G0224100","MUB2",159.318532148227,183.419929326255,86.8826423423532,115.524385935559,"no","OS06G0224100","Membrane-anchored ubiquitin-fold protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q67UI2]","Membrane-anchored ubiquitin-fold protein, HCG-1 domain containing protein. (Os06t0224100-01)",6,6435824,6439812,"GO:0005886;GO:0016020","plasma membrane;membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0227250-00",0.008444622259380781,0.12770748814943,0.33944787683493605,"OS01G0227250",null,662.457135472487,628.780427726051,805.333657023854,828.433436380477,"no","OS01G0227250","Os01g0227250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V048]","Hypothetical gene. (Os01t0227250-00)",1,7039880,7042890]
["OS03T0748700-01",0.00844889532646465,0.12770748814943,0.313140954400145,"OS03G0748700",null,1033.52347429812,1165.20185818064,1330.86171104286,1400.85588598932,"no","OS03G0748700","Protein NAR1 [Source:Projected from Arabidopsis thaliana (AT4G16440) UniProtKB/Swiss-Prot;Acc:Q94CL6]","Iron hydrogenase domain containing protein. (Os03t0748700-01)",3,30810342,30814716,"GO:0055114;GO:0003954;GO:0051536;GO:0070482;GO:0005634;GO:0005829","oxidation-reduction process;NADH dehydrogenase activity;iron-sulfur cluster binding;response to oxygen levels;nucleus;cytosol","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor. [EC:1.6.99.3];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. [GOC:BHF, GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS05T0302600-01",0.00847286850218955,0.12770748814943,-0.557888988238422,"OS05G0302600",null,231.370639709737,242.921942164868,155.137105612768,167.047668412953,"no","OS05G0302600","Os05g0302600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DJC1]","TRAM, LAG1 and CLN8 homology domain containing protein. (Os05t0302600-01)",5,13606399,13607760,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0104300-01",0.008466697102737931,0.12770748814943,-0.370800545112129,"OS06G0104300",null,1470.78340573194,1711.77622805159,1229.38838410118,1231.8544436768,"no","OS06G0104300","Os06g0104300 protein [Source:UniProtKB/TrEMBL;Acc:Q9LX04]","Similar to Pectinesterase-like protein. (Os06t0104300-01)",6,297316,301778,"GO:0016722;GO:0005507;GO:0016491;GO:0055114","oxidoreductase activity, oxidizing metal ions;copper ion binding;oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. [GOC:mah];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS07T0201500-00",0.00846416026582719,0.12770748814943,-1.7998891144437699,"OS07G0201500",null,53.00120381016,42.2025407998287,8.7813456007227,18.5608520458836,"no","OS07G0201500","Os07g0201500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3P6]","UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein. (Os07t0201500-00)",7,5481538,5482455,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0445600-01",0.00846069515833352,0.12770748814943,0.43900691129696806,"OS07G0445600",null,6071.89612350421,7096.43925170117,8500.42748854293,9351.50054323923,"no","OS07G0445600","COP1-interacting protein 7 (CIP7)-like protein [Source:UniProtKB/TrEMBL;Acc:Q7XI09]","Conserved hypothetical protein. (Os07t0445600-01);Conserved hypothetical protein. (Os07t0445600-02)",7,15204094,15211471]
["OS08T0203300-01",0.00846448812746209,0.12770748814943,-0.7517347399505611,"OS08G0203300",null,1474.12495433268,1546.51116050431,756.972116291547,1036.95049956611,"no","OS08G0203300","Os08g0203300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XD11]","Similar to SHR5-receptor-like kinase (Fragment). (Os08t0203300-01)",8,5998167,6005500,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0493300-02",0.00847172299632932,0.12770748814943,-0.26190249813294203,"OS10G0493300",null,2368.59091669529,2576.44280750104,2085.98351891214,2038.11232640282,"no","OS10G0493300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FWW1]","Hypothetical protein. (Os10t0493300-01);Hypothetical conserved gene. (Os10t0493300-02)",10,18723961,18725462,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS04T0192350-01",0.00848528020780837,0.127831499462012,-0.37987535330627203,"OS04G0192350",null,525.696918187464,570.593726327822,404.895495761355,437.608233673217,"no","OS04G0192350","Os04g0192350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7Z3]","Similar to H0124E07.4 protein. (Os04t0192350-01)",4,6306373,6309477]
["OS01T0194600-02",0.00849640286978915,0.127935978549925,0.380262157671645,"OS01G0194600","GRXS2",415.855599125871,385.998848778921,508.34233977517,535.334048481275,"no","OS01G0194600","Monothiol glutaredoxin-S2 [Source:UniProtKB/Swiss-Prot;Acc:Q5SMY5]","Thioredoxin fold domain containing protein. (Os01t0194600-02)",1,5085833,5086504,"GO:0051537;GO:0051536;GO:0005737;GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055;GO:0046872","2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;cytoplasm;cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity;metal ion binding","Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS02T0208100-01",0.00852914218363965,0.12817626758217301,-0.288968137331983,"OS02G0208100",null,1480.04115314671,1483.08057168411,1284.21287985947,1141.06449613361,"no","OS02G0208100","ADP,ATP carrier protein [Source:UniProtKB/TrEMBL;Acc:Q6H8E4]","Similar to plastidic ATP/ADP-transporter. (Os02t0208100-01)",2,6057100,6060267,"GO:0031969;GO:0015867;GO:0015866;GO:0009536;GO:0009507;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0005471;GO:0016020","chloroplast membrane;ATP transport;ADP transport;plastid;chloroplast;transport;integral component of membrane;ATP binding;nucleotide binding;ATP:ADP antiporter activity;membrane","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: ATP(out) + ADP(in) = ATP(in) + ADP(out). [TC:2.A.29.1.1];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0319100-01",0.00852794046637171,0.12817626758217301,-0.24554253304032903,"OS02G0319100","ML5",1860.13840295273,1861.0291162461,1562.10381186189,1576.69553695033,"no","OS02G0319100","Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EQX3]","Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0319100-01)",2,12720938,12728873,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS06T0701700-01",0.00851857317049545,0.12817626758217301,-0.7763472474394061,"OS06G0701700","HKT1",230.381226710184,301.59470892698903,142.124431543261,168.466076088439,"no","OS06G0701700","Cation transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q0D9S3]","Ion transporter , Na+/K+ symport (Os06t0701700-01);Similar to Cation transporter HKT1. (Os06t0701700-02)",6,29538938,29541203,"GO:0098655;GO:0008324;GO:0006812;GO:0055085;GO:0016020;GO:0016021;GO:0035725;GO:0015081;GO:0005886;GO:0006814;GO:0006810;GO:0006813;GO:0006811","cation transmembrane transport;cation transmembrane transporter activity;cation transport;transmembrane transport;membrane;integral component of membrane;sodium ion transmembrane transport;sodium ion transmembrane transporter activity;plasma membrane;sodium ion transport;transport;potassium ion transport;ion transport","A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Enables the transfer of cation from one side of the membrane to the other. [GOC:dgf, GOC:mtg_transport, ISBN:0815340729];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:vw];Enables the transfer of sodium ions (Na+) from one side of a membrane to the other. [GOC:ai, GOC:BHF];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS06T0719500-00",0.00852258335616477,0.12817626758217301,-0.807598488709042,"OS06G0719500",null,2043.57474871163,2323.01358120705,1051.87536447801,1442.89674511573,"no","OS06G0719500","Os06g0719500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X1A0]","Hypothetical conserved gene. (Os06t0719500-00)",6,30563598,30567200,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS06T0128200-02",0.008545218325249081,0.128291651239808,-0.785930420468223,"OS06G0128200",null,1426.20458901185,1691.88407958264,777.474734597919,1030.94746614333,"no","OS06G0128200","LIMR family protein Os06g0128200 [Source:UniProtKB/Swiss-Prot;Acc:Q658I5]","LMBR1-like conserved region domain containing protein. (Os06t0128200-01);Similar to predicted protein. (Os06t0128200-02);Non-protein coding transcript. (Os06t0128200-03)",6,1485977,1490634,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0232100-04",0.00854105717960798,0.128291651239808,-0.27687486918903303,"OS06G0232100",null,1254.95300990334,1287.75780684991,1024.50284193532,1074.1921678784,"no","OS06G0232100","Os06g0232100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DDD4]","Hypothetical conserved gene. (Os06t0232100-01);Protein kinase, core domain containing protein. (Os06t0232100-02);Hypothetical conserved gene. (Os06t0232100-03);Similar to predicted protein. (Os06t0232100-04)",6,6823036,6832862,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0006355;GO:0005524;GO:0004674;GO:0005886;GO:0048544;GO:0016020;GO:0016021;","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;regulation of transcription, DNA-templated;ATP binding;protein serine/threonine kinase activity;plasma membrane;recognition of pollen;membrane;integral component of membrane;","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS02T0612800-02",0.008586258068899611,0.128844477662584,-0.481237952775435,"OS02G0612800",null,341.258556083885,315.509051147116,240.381439802959,230.102351128315,"no","OS02G0612800","BRI1-KD interacting protein 135 [Source:UniProtKB/TrEMBL;Acc:Q6K624]","AT hook, DNA-binding, conserved site domain containing protein. (Os02t0612800-01);Non-protein coding transcript. (Os02t0612800-02)",2,24139771,24146705,"GO:0007064;GO:0006281;GO:0000785;GO:0005634","mitotic sister chromatid cohesion;DNA repair;chromatin;nucleus","The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. [GOC:ai, GOC:rn, PMID:10827941, PMID:11389843, PMID:14623866];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. [GOC:elh, PMID:20404130];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS04T0506100-01",0.00859409550869818,0.128898775641505,0.42873467266827,"OS04G0506100",null,375.085442348825,434.377371159212,517.123685375892,572.455752573042,"no","OS04G0506100","Os04g0506100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBW6]","Similar to Receptor-like protein kinase. (Os04t0506100-01)",4,25253913,25254615,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0378100-01",0.00860336923388289,0.128974551930123,-1.78001897274982,"OS10G0378100",null,112.117931136877,146.000582837711,50.7366634708423,24.4221737445837,"no","OS10G0378100","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q338Z0]","Similar to Cytochrome P450 family protein, expressed. (Os10t0378100-01)",10,12090264,12098560,"GO:0016125;GO:0010268;GO:0007275;GO:0004497;GO:0016132;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;monooxygenase activity;brassinosteroid biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0662200-01",8.6221263397198E-3,0.129129021534862,-0.45823261804476906,"OS06G0662200",null,1188.4500700509,1331.95336085313,846.911997936367,987.632706230966,"no","OS06G0662200","Os06g0662200 protein [Source:UniProtKB/TrEMBL;Acc:Q654B3]","Basic leucine zipper (bZIP) transcription factor, Negative regulator of cold and drought stress response (Os06t0662200-01)",6,27299932,27302104,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0307300-02",0.00862080688559425,0.129129021534862,-0.5678246520006021,"OS09G0307300",null,1043.97335153668,1303.81780664504,764.560408029723,819.337591158688,"no","OS09G0307300","Os09g0307300 protein [Source:UniProtKB/TrEMBL;Acc:Q0J2S5]","Targeting for Xklp2 family protein. (Os09t0307300-01);Similar to Microtubule-associated protein. (Os09t0307300-02)",9,7964048,7967912,"GO:0005819;GO:0060236;GO:0032147;GO:0005874","spindle;regulation of mitotic spindle organization;activation of protein kinase activity;microtubule","The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. [ISBN:0198547684];Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. [GOC:ascb_2009, GOC:dph, GOC:tb];Any process that initiates the activity of an inactive protein kinase. [GOC:mah];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568]"]
["OS08T0458200-01",0.008628466071800891,0.129160654299687,0.53025041564829,"OS08G0458200",null,210.985561321214,177.044805306598,286.857289623608,273.528345939338,"no","OS08G0458200","Os08g0458200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZC09]","Similar to MTD1. (Os08t0458200-01)",8,22462399,22464860]
["OS01T0231600-00",0.008636223369802831,0.12921346542322,-1.10583544594011,"OS01G0231600",null,63.1937430044216,58.671825014396,30.246857069156,26.3759476441504,"no","OS01G0231600","Os01g0231600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V087]","Pleckstrin homology-type domain containing protein. (Os01t0231600-00)",1,7277271,7277972,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0319300-01",8.65632886538782E-3,0.12931329040866,0.283052201171741,"OS02G0319300",null,2027.78112933774,2252.24590654801,2532.52521096456,2675.26780981659,"no","OS02G0319300","Os02g0319300 protein [Source:UniProtKB/TrEMBL;Acc:Q0E1P4]","Glutathione S-transferase, C-terminal-like domain containing protein. (Os02t0319300-01)",2,12731587,12732144]
["OS03T0723600-02",0.00865982561456264,0.12931329040866,6.91946750325444,"OS03G0723600",null,1.21647385187218,0,89.0007597631485,58.2542404575055,"no","OS03G0723600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q75GU4]","Conserved hypothetical protein. (Os03t0723600-01);Conserved hypothetical protein. (Os03t0723600-02)",3,29397649,29401365]
["OS08T0120600-01",0.00864746650347104,0.12931329040866,1.93404866511918,"OS08G0120600",null,28.7311837900924,14.4106236877464,63.8616078540491,100.994483105786,"no","OS08G0120600","Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:Q6YPF1]","Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13). (Os08t0120600-01)",8,1127884,1129553,"GO:0004332;GO:0006096;GO:0016829;GO:0003824","fructose-bisphosphate aldolase activity;glycolytic process;lyase activity;catalytic activity","Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate. [EC:4.1.2.13];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS10T0555700-02",0.0086538140530572,0.12931329040866,-0.559488233728601,"OS10G0555700","EXPB2",4156.10928327561,4701.85704521907,2706.14037525996,3304.36907753572,"no","OS10G0555700","Expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:O24230]","Beta-expansin. (Os10t0555700-02)",10,21835933,21837651,"GO:0019953;GO:0005618;GO:0005576;GO:0016020;GO:0071555","sexual reproduction;cell wall;extracellular region;membrane;cell wall organization","A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. [GOC:jl, http://en.wikipedia.org/wiki/Sexual_reproduction, ISBN:0387520546];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS04T0625800-02",0.008677331388463721,0.12944815848649602,-1.07152706494096,"OS04G0625800",null,165.278624877302,181.870193678227,84.0906819486524,81.0879648338577,"no","OS04G0625800","Os04g0625800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9Y2]","Similar to RNA Binding Protein 45. (Os04t0625800-01);Non-protein coding transcript. (Os04t0625800-02)",4,31819464,31823467,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS04T0650000-03",0.00867680679724333,0.12944815848649602,-0.23900710726403,"OS04G0650000",null,5944.15568923954,5872.9692513501,5034.80852507299,4978.17539701386,"no","OS04G0650000","Os04g0650000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFN4]","Similar to Oryzain alpha chain precursor (EC 3.4.22.-). (Os04t0650000-01);Similar to Oryzain alpha chain precursor (EC 3.4.22.-). (Os04t0650000-02);Similar to cDNA clone:J013002H09, full insert sequence. (Os04t0650000-03)",4,33123327,33126987,"GO:0006508;GO:0008234","proteolysis;cysteine-type peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE]"]
["OS01T0844800-03",0.00870043283614421,0.12966615805359902,0.277681843685181,"OS01G0844800",null,1551.80224053656,1524.94081628604,1958.21737814566,1771.55040598037,"no","OS01G0844800","Os01g0844800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JHT2]","Similar to Pumilio RBD (Fragment). (Os01t0844800-01);Hypothetical conserved gene. (Os01t0844800-02);Similar to predicted protein. (Os01t0844800-03)",1,36278953,36286380,"GO:0003723;","RNA binding;","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];"]
["OS12T0152750-00",0.00869968984764032,0.12966615805359902,0.49777248429109,"OS12G0152750",null,265.56236478759,293.730441610339,427.752561031637,361.986614977094,"no","OS12G0152750","Os12g0152750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y726]","Hypothetical gene. (Os12t0152750-00)",12,2600996,2602026]
["OS01T0957600-01",0.00870641749249492,0.12968045057705,-0.503124162998091,"OS01G0957600",null,508.41717681383,421.721401581522,313.289874330785,342.994694623412,"no","OS01G0957600","Os01g0957600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VD21]","Similar to cDNA, clone: J053023H06, full insert sequence. (Os01t0957600-01)",1,42207009,42208510,"GO:0044550;GO:0016020;GO:0016709;GO:0016705;GO:0005506;GO:0055114;GO:0020037","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS10T0109600-02",8.709881008906321E-3,0.12968045057705,0.6783607609936031,"OS10G0109600",null,3965.91700011564,3081.81480774107,5258.07460008021,6020.5542694434,"no","OS10G0109600","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q7XHB1]","Peroxidase (EC 1.11.1.7). (Os10t0109600-01);Peroxidase (EC 1.11.1.7). (Os10t0109600-02)",10,677177,678880,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS04T0105200-01",0.00871809552542664,0.129721324952937,-0.729548300982305,"OS04G0105200",null,647.226238835608,782.291000191947,379.54927096457,482.582153192974,"no","OS04G0105200","OSJNBa0094O15.16 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXI6]","Similar to B0616E02-H0507E05.1 protein. (Os04t0105200-01)",4,346725,347514]
["OS06T0644200-01",0.00872111814131097,0.129721324952937,-0.39427632854444306,"OS06G0644200",null,3333.0592459359,3781.59477058687,2564.94340900743,2848.39009467553,"no","OS06G0644200","Inorganic diphosphatase, H+-translocating, vacuolar membrane [Source:UniProtKB/TrEMBL;Acc:Q67WN5]","Similar to Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Vacuolar H+-pyrophosphatase). (Os06t0644200-01);Similar to Vacuolar H+-pyrophosphatase. (Os06t0644200-02);Similar to Vacuolar H+-pyrophosphatase. (Os06t0644200-03)",6,26272898,26278664,"GO:0015992;GO:0009678;GO:0004427;GO:0055085;GO:0016020;GO:0016021;GO:0016787","proton transport;hydrogen-translocating pyrophosphatase activity;inorganic diphosphatase activity;transmembrane transport;membrane;integral component of membrane;hydrolase activity","The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Catalysis of the hydrolysis of pyrophosphate, which generates a proton motive force. [GOC:mtg_transport, ISBN:0815340729, TC:3.A.10.-.-];Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. [EC:3.6.1.1, RHEA:24579];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS05T0559316-00",0.00873135062591397,0.12974719081854302,-0.939547603092007,"OS05G0559316",null,76.4440439569616,86.4637421264783,40.9796128033726,43.9599127402507,"no","OS05G0559316","Os05g0559316 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQQ1]","Hypothetical conserved gene. (Os05t0559316-00)",5,27832999,27834526]
["OS11T0181100-01",0.00873091659636882,0.12974719081854302,-0.25539520679522304,"OS11G0181100",null,2344.28401468015,2253.20394660549,1847.98539641876,2003.59513400565,"no","OS11G0181100","Transmembrane 9 superfamily member [Source:UniProtKB/TrEMBL;Acc:Q2R9Q8]","Similar to Transmembrane protein TM9SF3 (Fragment). (Os11t0181100-01)",11,4076905,4083472,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0486000-03",0.00874315533276144,0.129859446634189,-0.5756176432836171,"OS10G0486000",null,1991.91926208,2036.29060646601,1187.58598838735,1515.33849652838,"no","OS10G0486000","HD domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q337J5]","Metal-dependent phosphohydrolase, HD region domain containing protein. (Os10t0486000-01);Similar to metal-dependent phosphohydrolase, HD subdomain. (Os10t0486000-02);Similar to metal-dependent phosphohydrolase, HD subdomain. (Os10t0486000-03)",10,18386542,18391287]
["OS02T0590700-01",0.00875455697814129,0.129902488973372,-0.6782950483777891,"OS02G0590700",null,851.301782243653,1122.7659229962,610.777686930401,622.823811556229,"no","OS02G0590700","Os02g0590700 protein [Source:UniProtKB/TrEMBL;Acc:Q6YY74]","Hypothetical gene. (Os02t0590700-01);Conserved hypothetical protein. (Os02t0590700-02)",2,22820217,22828726]
["OS05T0128400-01",0.00875306442933705,0.129902488973372,-0.27711500372566,"OS05G0128400","MTP1",1430.01324895489,1305.19077400446,1125.963647026,1131.23508784912,"no","OS05G0128400","Metal tolerance protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q688R1]","Cation diffusion facilitator (CDF) family protein, Bivalent cation transporter, Translocation of Zn, Cd and other heavy metals, Ion homeostasis (Os05t0128400-01)",5,1675495,1679054,"GO:0005774;GO:0005773;GO:0005794;GO:0016020;GO:0098655;GO:0008324;GO:0006812;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0071577;GO:0005385;GO:0006829;GO:0010043;GO:0061088;GO:0000325;GO:0010312;GO:0009705","vacuolar membrane;vacuole;Golgi apparatus;membrane;cation transmembrane transport;cation transmembrane transporter activity;cation transport;transport;transmembrane transport;ion transport;integral component of membrane;zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;zinc II ion transport;response to zinc ion;regulation of sequestering of zinc ion;plant-type vacuole;detoxification of zinc ion;plant-type vacuole membrane","The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Enables the transfer of cation from one side of the membrane to the other. [GOC:dgf, GOC:mtg_transport, ISBN:0815340729];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:sm];Any process that modulates the rate, frequency, or extent of sequestering of zinc ion. Sequestering of zinc ion is the process of binding or confining zinc ions such that they are separated from other components of a biological system. [GOC:BHF, GOC:dph, GOC:tb];A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];Any process that reduces or removes the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion. [GOC:tair_curators];The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0471245208]"]
["OS04T0460300-01",0.00876973926534879,0.12997285401184902,-0.522119274400201,"OS04G0460300",null,526.954276343322,475.550581695631,315.15273655927,382.939684315073,"no","OS04G0460300","OSJNBa0072F16.7 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUV8]","Amino acid transporter, transmembrane domain containing protein. (Os04t0460300-01)",4,22977821,22980329,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0692725-01",0.00877206156626188,0.12997285401184902,0.37486561735261403,"OS04G0692725",null,604.227257097825,612.974286912796,847.897824424968,730.470256805115,"no","OS04G0692725",null,"NA",4,35452104,35459831]
["OS05T0119300-01",0.00876857576920067,0.12997285401184902,-0.45171839742011904,"OS05G0119300",null,6840.9165725538,6039.62684035485,4374.69913186756,5043.18620307244,"no","OS05G0119300","Os05g0119300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WHG7]","Similar to ESTs AA754121. (Os05t0119300-01);Similar to ESTs AA754121. (Os05t0119300-02);Similar to ESTs AA754121. (Os05t0119300-03)",5,1000593,1002757,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0544900-01",0.00877694211685655,0.129982130661271,0.26518068661271704,"OS10G0544900",null,1109.19934601654,1123.19946252354,1310.30437168044,1372.56250127115,"no","OS10G0544900","Probable protein phosphatase 2C 72 [Source:UniProtKB/Swiss-Prot;Acc:Q7XCJ7]","Similar to Protein phosphatase 2C-like protein. (Os10t0544900-01)",10,21293367,21297479,"GO:0004721;GO:0043169;GO:0006470;GO:0004722;GO:0046872;GO:0016787;GO:0003824;GO:0016020;GO:0016021","phosphoprotein phosphatase activity;cation binding;protein dephosphorylation;protein serine/threonine phosphatase activity;metal ion binding;hydrolase activity;catalytic activity;membrane;integral component of membrane","Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. [GOC:jl];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0720700-00",0.00879234596992068,0.13008414240824,-0.851684338017976,"OS01G0720700",null,104.983153700894,90.5810631801201,53.6637786710832,54.7056691878675,"no","OS01G0720700","Os01g0720700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7I0]","Similar to satase isoform I. (Os01t0720700-00)",1,30043446,30043783]
["OS01T0965900-01",0.00878833602435868,0.13008414240824,0.802026461634451,"OS01G0965900",null,818.460897299202,776.115018611484,1612.84047533274,1167.3799049911,"no","OS01G0965900","Os01g0965900 protein [Source:UniProtKB/TrEMBL;Acc:Q5JJV6]","Conserved hypothetical protein. (Os01t0965900-01)",1,42587307,42590270,"GO:0005886","plasma membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS07T0674400-01",0.008800278994030731,0.130138491687138,-0.50487937304844,"OS07G0674400",null,584.032495831186,590.835571197602,369.7922202971,458.159979448391,"no","OS07G0674400","Os07g0674400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZDW8]","Pollen Ole e 1 allergen/extensin domain containing protein. (Os07t0674400-01)",7,28531925,28532701]
["OS03T0300400-01",0.008818645898596891,0.130191300800263,-0.93249565643708,"OS03G0300400",null,7080.75697825349,6161.57095677499,2827.59328343271,4110.74028468833,"no","OS03G0300400","Os03g0300400 protein [Source:UniProtKB/TrEMBL;Acc:Q10MP7]","Pathogen-related protein (JIOsPR10). (Os03t0300400-01)",3,10562231,10563277,"GO:0009607;GO:0006952","response to biotic stimulus;defense response","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS03T0685500-01",0.00881439044651998,0.130191300800263,-0.293666831584933,"OS03G0685500",null,9756.29851674715,10769.8825460636,8070.05660706416,8675.73300102592,"no","OS03G0685500","CHCH domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XXS3]","CHCH domain containing protein. (Os03t0685500-01)",3,27343321,27346707,"GO:0005739;GO:0007005;GO:0005634","mitochondrion;mitochondrion organization;nucleus","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS04T0119400-01",8.82089528202884E-3,0.130191300800263,-0.243174982570831,"OS04G0119400",null,2916.08546347823,3143.57462445553,2547.56592927633,2572.14333877956,"no","OS04G0119400","Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XTJ3]","Similar to Pyruvate dehydrogenase E1 component, alpha subunit. (Os04t0119400-01)",4,1136017,1139638,"GO:0004739;GO:0043231;GO:0016624;GO:0006096;GO:0006086;GO:0009536;GO:0009507;GO:0055114;GO:0016491;GO:0008152;GO:0009570;GO:0009941","pyruvate dehydrogenase (acetyl-transferring) activity;intracellular membrane-bounded organelle;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;glycolytic process;acetyl-CoA biosynthetic process from pyruvate;plastid;chloroplast;oxidation-reduction process;oxidoreductase activity;metabolic process;chloroplast stroma;chloroplast envelope","Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. [EC:1.2.4.1];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. [GOC:jl];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. [GOC:dph, GOC:go_curators, GOC:tb];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS04T0586000-00",0.00881565263656605,0.130191300800263,-0.532112144709836,"OS04G0586000",null,1547.2274496889,1640.75243987627,982.535002214196,1222.08557417897,"no","OS04G0586000","OSJNBa0013K16.15 protein [Source:UniProtKB/TrEMBL;Acc:Q7XP52]","Protein of unknown function DUF581 family protein. (Os04t0586000-00)",4,29610157,29611144]
["OS03T0210500-01",0.008834772291410381,0.13023496238044602,-0.367529100596091,"OS03G0210500",null,779.729248361008,895.517329167097,628.354062985047,670.144447551377,"no","OS03G0210500","Os03g0210500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DU33]","Protein of unknown function DUF538 family protein. (Os03t0210500-01)",3,5771944,5772406]
["OS03T0308800-03",0.008829518780481311,0.13023496238044602,0.6776121353043061,"OS03G0308800",null,459.079691622026,475.725680735442,849.988034740537,645.223978749901,"no","OS03G0308800","Os03g0308800 protein [Source:UniProtKB/TrEMBL;Acc:Q10MH4]","Tetratricopeptide-like helical domain containing protein. (Os03t0308800-01);Hypothetical conserved gene. (Os03t0308800-02);Hypothetical conserved gene. (Os03t0308800-03)",3,10992850,10997554,"GO:0006396;GO:0003727;GO:0043621;GO:0006397;GO:0006417;GO:0009657;GO:0010114;GO:1901918;GO:0005774;GO:0009507;GO:0009570;GO:0009941;GO:0031969","RNA processing;single-stranded RNA binding;protein self-association;mRNA processing;regulation of translation;plastid organization;response to red light;negative regulation of exoribonuclease activity;vacuolar membrane;chloroplast;chloroplast stroma;chloroplast envelope;chloroplast membrane","Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];Interacting selectively and non-covalently with single-stranded RNA. [GOC:jl];Interacting selectively and non-covalently with a domain within the same polypeptide. [GOC:jl];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm];Any process that stops, prevents or reduces the frequency, rate or extent of exoribonuclease activity. [GOC:TermGenie, PMID:22570495];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz]"]
["OS10T0184300-02",0.00883664169333152,0.13023496238044602,-0.68798472600123,"OS10G0184300",null,417.912638854167,529.992795082195,281.677182723788,306.706979070162,"no","OS10G0184300","V-type proton ATPase subunit a [Source:UniProtKB/TrEMBL;Acc:Q0IYP2]","ATPase, V0/A0 complex, 116-kDa subunit family protein. (Os10t0184300-01);Non-protein coding transcript. (Os10t0184300-02)",10,5788473,5789339,"GO:0016471;GO:0000325;GO:0070072;GO:0015986;GO:0051117;GO:0007035;GO:0046961;GO:0033179;GO:0015992;GO:0015991;GO:0015078;GO:0006810;GO:0006811;GO:0016020;GO:0016021","vacuolar proton-transporting V-type ATPase complex;plant-type vacuole;vacuolar proton-transporting V-type ATPase complex assembly;ATP synthesis coupled proton transport;ATPase binding;vacuolar acidification;proton-transporting ATPase activity, rotational mechanism;proton-transporting V-type ATPase, V0 domain;proton transport;ATP hydrolysis coupled proton transport;hydrogen ion transmembrane transporter activity;transport;ion transport;membrane;integral component of membrane","A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen. [GOC:mah, ISBN:0716743663, PMID:16449553];A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];The aggregation, arrangement and bonding together of a vacuolar proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across the vacuolar membrane. [GOC:BHF, GOC:mah];The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. [ISBN:0716731363];Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP. [GOC:ai];Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion. [GOC:jid];Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism. [EC:3.6.3.14];A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. [GOC:mah, ISBN:0716743663, PMID:16449553];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:mah, GOC:vw];Enables the transfer of hydrogen ions from one side of a membrane to the other. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0815800-02",0.008858456463285251,0.130430632224719,-0.5011705885931911,"OS01G0815800",null,1268.97594472348,1481.47107096967,1040.17965755761,903.102678466212,"no","OS01G0815800","Os01g0815800 protein [Source:UniProtKB/TrEMBL;Acc:Q5N754]","Similar to 60S ribosomal protein L24-A (L30A) (RP29) (YL21). (Os01t0815800-01);Non-protein coding transcript. (Os01t0815800-02)",1,34682524,34685373,"GO:0000027;GO:0006412;GO:0003735;GO:0022625;GO:0003723;GO:0005840;GO:0046872;GO:1902626","ribosomal large subunit assembly;translation;structural constituent of ribosome;cytosolic large ribosomal subunit;RNA binding;ribosome;metal ion binding;assembly of large subunit precursor of preribosome","The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. [GOC:jl];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The aggregation, arrangement and bonding together of a set of components to form the large subunit precursor of the preribosome. [GO_REF:0000079, GOC:di, GOC:TermGenie, PMID:22735702]"]
["OS09T0114500-02",0.00885599192486779,0.130430632224719,-0.315419998757278,"OS09G0114500","KIN4A",1310.95442737506,1394.66374699336,1081.68481373472,1092.59596546271,"no","OS09G0114500","Kinesin-like protein KIN-4A [Source:UniProtKB/Swiss-Prot;Acc:Q6YUL8]","Kinesin-4 protein with transcription regulation activity, Cell cycle and wall modification, Cell elongation by regulating GA biosynthesis pathway (Os09t0114500-01);Similar to Kinesin-like protein. (Os09t0114500-02);Similar to FRA1 (FRAGILE FIBER 1); microtubule motor. (Os09t0114500-03);Hypothetical protein. (Os09t0114500-04)",9,1158082,1167873,"GO:0003774;GO:0005874;GO:0007018;GO:0008017;GO:0003777;GO:0005524;GO:0000166;GO:0045893;GO:0005871;GO:0008574;GO:0040008;GO:0007049;GO:0005856;GO:0005737;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0071555;GO:0043565;GO:0009832;GO:0009937;GO:0010215;GO:0042127","motor activity;microtubule;microtubule-based movement;microtubule binding;microtubule motor activity;ATP binding;nucleotide binding;positive regulation of transcription, DNA-templated;kinesin complex;ATP-dependent microtubule motor activity, plus-end-directed;regulation of growth;cell cycle;cytoskeleton;cytoplasm;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;cell wall organization;sequence-specific DNA binding;plant-type cell wall biogenesis;regulation of gibberellic acid mediated signaling pathway;cellulose microfibril organization;regulation of cell proliferation","Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work. [GOC:mah, http://www.proweb.org/kinesin//KinesinMotility.html, http://www.proweb.org/kinesin//KinesinStructure.html];Catalysis of movement along a microtubule toward the plus end, coupled to the hydrolysis of ATP. [EC:3.6.4.4, GOC:vw];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu];Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling. [GOC:go_curators];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730];Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl]"]
["OS04T0649900-01",0.00887388625608282,0.130594880971022,-0.5171207121776891,"OS04G0649900",null,477.01083429144,454.963976427422,290.760109890596,360.471284470056,"no","OS04G0649900","OSJNBb0059K02.7 protein [Source:UniProtKB/TrEMBL;Acc:Q7XMQ4]","Protein of unknown function DUF579, plant family protein. (Os04t0649900-01)",4,33118368,33119696,"GO:0045492;GO:0016020;GO:0016021","xylan biosynthetic process;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0234100-01",0.008890428998552411,0.130775342688384,-1.31619688926672,"OS03G0234100","HB4",210.408219213734,251.149579683686,68.0567217286535,117.301284642761,"no","OS03G0234100","Non-symbiotic hemoglobin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q94FT7]","Similar to Non-symbiotic hemoglobin 4 (rHb4) (ORYsa GLB1d). (Os03t0234100-01)",3,7100048,7101570,"GO:0019825;GO:0046872;GO:0006810;GO:0020037;GO:0005344;GO:0015671","oxygen binding;metal ion binding;transport;heme binding;oxygen transporter activity;oxygen transport","Interacting selectively and non-covalently with oxygen (O2). [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Enables the directed movement of oxygen into, out of or within a cell, or between cells. [GOC:ai];The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS01T0960000-01",8.896525512232481E-3,0.13080204400853102,-0.377771290418476,"OS01G0960000",null,491.280389163406,498.195847490661,367.840810163607,393.68544076269,"no","OS01G0960000","Gamma-secretase subunit PEN2-like [Source:UniProtKB/TrEMBL;Acc:Q5JN39]","Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit domain containing protein. (Os01t0960000-01)",1,42315264,42317679,"GO:0070765;GO:0016020;GO:0016021;GO:0005798","gamma-secretase complex;membrane;integral component of membrane;Golgi-associated vesicle","A protein complex that has aspartic-type endopeptidase activity, and contains a catalytic subunit, presenilin (PS), that is a prototypical member of the GxGD-type aspartyl peptidases. The complex also contains additional subunits, including nicastrin, APH-1, PEN-2, and a regulatory subunit, CD147. Gamma-secretase cleaves several transmembrane proteins including the cell surface receptor Notch and the amyloid-beta precursor protein. [GOC:mah, PMID:15286082, PMID:15890777, PMID:17047368];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell. [GOC:mah]"]
["OS01T0217500-01",0.00891534883404647,0.130897814811265,0.9400798738412081,"OS01G0217500",null,42.8086646158985,39.1145500095973,80.9835205399983,76.1971820831012,"no","OS01G0217500","Os01g0217500 protein [Source:UniProtKB/TrEMBL;Acc:Q5QNF2]","ThiJ/PfpI domain containing protein. (Os01t0217500-01)",1,6412786,6419867]
["OS02T0194800-03",0.008917268843479521,0.130897814811265,-0.40247419907959203,"OS02G0194800",null,533.052132775435,600.754025352638,412.924802048695,444.867224615973,"no","OS02G0194800","Os02g0194800 protein [Source:UniProtKB/TrEMBL;Acc:Q6H7Q8]","C-CAP/cofactor C-like domain domain containing protein. (Os02t0194800-01);C-CAP/cofactor C-like domain domain containing protein. (Os02t0194800-02);Non-protein coding transcript. (Os02t0194800-03)",2,5297666,5306436,"GO:0007010;GO:0003779","cytoskeleton organization;actin binding","A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. [GOC:clt]"]
["OS06T0503400-01",0.00892388098744592,0.130897814811265,-0.22462589748477402,"OS06G0503400",null,4694.68355287687,4765.79911959041,4030.63763073172,4065.8034849983,"no","OS06G0503400","Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:Q656J2]","Reticulon family protein. (Os06t0503400-01)",6,17836976,17840764,"GO:0005789;GO:0005783;GO:0003676;GO:0016020;GO:0016021","endoplasmic reticulum membrane;endoplasmic reticulum;nucleic acid binding;membrane;integral component of membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0206700-01",0.00892165634325619,0.130897814811265,-0.25250446675995303,"OS07G0206700","SMT1-1",5247.83748801276,5721.70645435477,4544.06872953521,4664.1823725843,"no","OS07G0206700","Cycloartenol-C-24-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZIX2]","Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C- methyltransferase 1) (Sterol C-methyltransferase 1). (Os07t0206700-01);Similar to Cycloartenol-C-24-methyltransferase 1. (Os07t0206700-02)",7,5750899,5756651,"GO:0006694;GO:0032259;GO:0008168;GO:0008152;GO:0016740;GO:0016126;GO:0008202;GO:0008757;GO:0005737;GO:0006629;GO:0003838","steroid biosynthetic process;methylation;methyltransferase activity;metabolic process;transferase activity;sterol biosynthetic process;steroid metabolic process;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;lipid metabolic process;sterol 24-C-methyltransferase activity","The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:0198547684];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the reaction: S-adenosyl-L-methionine + 5-alpha-cholest-8,24-dien-3-beta-ol = S-adenosyl-L-homocysteine + 24-methylene-5-alpha-cholest-8-en-3-beta-ol. [EC:2.1.1.41]"]
["OS07T0693500-01",8.92446151649204E-3,0.130897814811265,0.243779653025389,"OS07G0693500","AMPD",1763.80173733698,1771.00687489025,2153.06955755779,2032.464617711,"no","OS07G0693500","Probable AMP deaminase [Source:UniProtKB/Swiss-Prot;Acc:Q84NP7]","Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3. (Os07t0693500-01);Hypothetical gene. (Os07t0693500-02)",7,29505383,29513201,"GO:0009117;GO:0032264;GO:0009168;GO:0003876;GO:0019239;GO:0046872;GO:0016787;GO:0016020;GO:0016021","nucleotide metabolic process;IMP salvage;purine ribonucleoside monophosphate biosynthetic process;AMP deaminase activity;deaminase activity;metal ion binding;hydrolase activity;membrane;integral component of membrane","The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). [GOC:ma];Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis. [GOC:mah];The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:0198506732];Catalysis of the reaction: AMP + H2O = IMP + NH3. [EC:3.5.4.6];Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3). [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0207000-01",0.00893232427649104,0.130950274134047,-0.304373410409841,"OS08G0207000",null,1529.26337167675,1732.82824026086,1334.25673313265,1307.36498869948,"no","OS08G0207000","Os08g0207000 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7A8]","Similar to 40S ribosomal protein S11. (Os08t0207000-01)",8,6244128,6245111,"GO:0006412;GO:0022627;GO:0003735;GO:0005840;GO:0005622","translation;cytosolic small ribosomal subunit;structural constituent of ribosome;ribosome;intracellular","The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The small subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS01T0721900-01",0.0089668568537583,0.131393482300251,0.242282394287185,"OS01G0721900",null,2899.05519464458,3122.84626303743,3588.79640736547,3534.28507815176,"no","OS01G0721900","Os01g0721900 protein [Source:UniProtKB/TrEMBL;Acc:Q8W0D1]","Similar to Nuclear RNA binding protein B (Fragment). (Os01t0721900-01);Similar to plasminogen activator inhibitor 1 RNA-binding protein. (Os01t0721900-02)",1,30095422,30098794]
["OS02T0520100-01",0.00897756311469385,0.131487300230166,-0.42785066468564403,"OS02G0520100",null,389.354997220791,420.996077734877,288.808699757102,313.580710880455,"no","OS02G0520100","MutT-like protein [Source:UniProtKB/TrEMBL;Acc:Q6H4N6]","NUDIX hydrolase domain containing protein. (Os02t0520100-01)",2,18936409,18939517,"GO:0016818;GO:0005634;GO:0005737;GO:0016787","hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;nucleus;cytoplasm;hydrolase activity","Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0634600-01",8.990176597222321E-3,0.131608948441944,0.306310308092665,"OS07G0634600",null,2922.81925680516,2566.38997898934,3399.12519092314,3388.5081788028,"no","OS07G0634600","Pectin acetylesterase [Source:UniProtKB/TrEMBL;Acc:Q69UW6]","Similar to Pectin acetylesterase (Fragment). (Os07t0634600-01);Similar to predicted protein. (Os07t0634600-02)",7,26340582,26344345,"GO:0016787;GO:0005618;GO:0005576;GO:0016020;GO:0016021;GO:0071555;GO:0052793;GO:0009505","hydrolase activity;cell wall;extracellular region;membrane;integral component of membrane;cell wall organization;pectin acetylesterase activity;plant-type cell wall","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the reaction: pectin + H2O = pectate + acetate. This reaction is the hydrolysis of acetyl esters of pectin, producing pectate, partially esterified pectin. [GOC:mengo_curators, PMID:9218776];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208]"]
["OS10T0462600-02",0.00900361778409062,0.131742591254567,-0.324256673246746,"OS10G0462600",null,863.509311306969,792.054247143146,667.222662352811,655.092182065083,"no","OS10G0462600","Os10g0462600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVE0]","Conserved hypothetical protein. (Os10t0462600-01);Conserved hypothetical protein. (Os10t0462600-02)",10,17028165,17035140]
["OS01T0865700-00",0.009037899491657399,0.132022892049794,-1.37531886916658,"OS01G0865700",null,44.8471724547508,46.3198618534705,21.4655114684333,13.6764172969669,"no","OS01G0865700","RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAX7]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0865700-00)",1,37464074,37465567,"GO:0016567;GO:0004842;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0624600-01",0.00904468036131272,0.132022892049794,0.5900844754617021,"OS04G0624600",null,160.436061716905,170.637449887352,236.563220865383,261.813286678737,"no","OS04G0624600","Os04g0624600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9Z0]","Starch synthase, Starch biosynthesis (Os04t0624600-01);Similar to H0215F08.14 protein. (Os04t0624600-02)",4,31751600,31759420,"GO:2001070;GO:0004373;GO:0019252;GO:0009011;GO:0009507","starch binding;glycogen (starch) synthase activity;starch biosynthetic process;starch synthase activity;chloroplast","Interacting selectively and non-covalently with starch. [GOC:mengo_curators];Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.11];The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.21];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS06T0360600-03",0.00905218949029962,0.132022892049794,0.51840008272729,"OS06G0360600",null,210.51385697586,250.062030856443,334.96656219022,324.746635938263,"no","OS06G0360600","Os06g0360600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WWF6]","Similar to OSIGBa0104J13.3 protein. (Os06t0360600-01);Conserved hypothetical protein. (Os06t0360600-02);Hypothetical conserved gene. (Os06t0360600-03)",6,14895813,14913391]
["OS07T0101000-00",0.00905734425688558,0.132022892049794,-1.32136307171111,"OS07G0101000","LAC14",325.142000296943,192.484759257755,97.6591553342802,109.472654580653,"no","OS07G0101000","Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q69L99]","Cupredoxin domain containing protein. (Os07t0101000-00)",7,58808,60650,"GO:0016722;GO:0048046;GO:0046274;GO:0052716;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0005576","oxidoreductase activity, oxidizing metal ions;apoplast;lignin catabolic process;hydroquinone:oxygen oxidoreductase activity;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;extracellular region","Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. [GOC:mah];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. [GOC:ai];Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. [EC:1.10.3.2];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS07T0489650-00",0.00904465130235855,0.132022892049794,0.32462133597004805,"OS07G0489650",null,653.195806268957,605.860965850393,791.886012217208,784.875725605793,"no","OS07G0489650","Os07g0489650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6H6]","Hypothetical gene. (Os07t0489650-00)",7,18134588,18135304]
["OS09T0486500-02",0.0090427222660335,0.132022892049794,-0.777349161769969,"OS09G0486500","SAP1",408.952254423969,452.905315900601,211.727999484092,291.112311035438,"no","OS09G0486500","Zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:A3C039]","A20/AN1 zinc-finger protein, Response to multiple biotic stresses, Regulation of abiotic stress responses (Os09t0486500-02)",9,18760705,18761574,"GO:0046872;GO:0003677;GO:0008270","metal ion binding;DNA binding;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS09T0503000-01",0.009053851210971471,0.132022892049794,1.31373763101484,"OS09G0503000",null,19.2699780803098,16.4692842145673,44.8824330703605,43.9599127402507,"no","OS09G0503000","Os09g0503000 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0N8]","Alcohol dehydrogenase superfamily, zinc-containing protein. (Os09t0503000-01)",9,19465674,19466294]
["OS11T0433600-01",0.00904666588611564,0.132022892049794,0.419534808332563,"OS11G0433600",null,355.719617879728,347.913629032734,505.415224574929,435.691579603374,"no","OS11G0433600","Os11g0433600 protein [Source:UniProtKB/TrEMBL;Acc:Q0IT03]","Tetratricopeptide-like helical domain containing protein. (Os11t0433600-01)",11,14028186,14029896,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS07T0648000-01",9.06955653165613E-3,0.132137859396833,-0.660628105301554,"OS07G0648000",null,198.57610858206,176.978473570924,106.769917614629,130.806970532384,"no","OS07G0648000","BLE2 protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8LIE4]","Armadillo-like helical domain containing protein. (Os07t0648000-01)",7,27058971,27062284,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0497400-02",0.00907400323332066,0.132139631451102,-0.309133645206768,"OS04G0497400",null,1488.11072236219,1618.10717408124,1202.25356840884,1304.85659633719,"no","OS04G0497400","6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q7XUK6]","Similar to 6,7-dimethyl-8-ribityllumazine synthase (Fragment). (Os04t0497400-01);Similar to 6,7-dimethyl-8-ribityllumazine synthase (Fragment). (Os04t0497400-02)",4,24878145,24881728,"GO:0009231;GO:0009570;GO:0016740;GO:0000906;GO:0009349;GO:0009507","riboflavin biosynthetic process;chloroplast stroma;transferase activity;6,7-dimethyl-8-ribityllumazine synthase activity;riboflavin synthase complex;chloroplast","The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 3,4-dihydroxy-2-butanone-4-phosphate + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-ribityllumazine + phosphate. [EC:5.4.-.-, PMID:7559556];An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine. [EC:2.5.1.9];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS02T0715300-01",0.00909517164829717,0.13230000140793602,-31.0909575316219,"OS02G0715300",null,94.8391504324306,46.7884734069525,6.19208854348989e-08,0,"no","OS02G0715300","Os02g0715300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZHP7]","Conserved hypothetical protein. (Os02t0715300-01);Conserved hypothetical protein. (Os02t0715300-02)",2,29676022,29677031]
["OS03T0720800-01",0.00909800677396156,0.13230000140793602,-0.45301400361904604,"OS03G0720800",null,412.797837367592,478.638572485862,310.274211225535,340.933545474389,"no","OS03G0720800","Myb-like DNA-binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8LLP3]","Similar to MYB transcription factor R2R3 type. (Os03t0720800-01)",3,29236187,29238382,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS08T0471900-01",0.009091662863448431,0.13230000140793602,0.29347230237785,"OS08G0471900",null,925.482558838948,979.922410766754,1217.67992330021,1117.55867055215,"no","OS08G0471900","Os08g0471900 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z9R0]","Zinc finger, ZPR1-type domain containing protein. (Os08t0471900-01)",8,23219093,23231034,"GO:0005634;GO:0005737;GO:0008270","nucleus;cytoplasm;zinc ion binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS10T0155500-01",0.00913150908471556,0.132724008352155,0.23169306526297803,"OS10G0155500",null,2274.97474815918,2239.82265318115,2613.91387381512,2687.41599885399,"no","OS10G0155500","Aldose 1-epimerase [Source:UniProtKB/TrEMBL;Acc:Q33AZ5]","Similar to Aldose 1-epimerase-like protein. (Os10t0155500-01)",10,3475597,3478195,"GO:0019318;GO:0004034;GO:0016853;GO:0005975;GO:0030246;GO:0033499;GO:0006006;GO:0003824;GO:0016020;GO:0016021;GO:0005829;GO:0048046","hexose metabolic process;aldose 1-epimerase activity;isomerase activity;carbohydrate metabolic process;carbohydrate binding;galactose catabolic process via UDP-galactose;glucose metabolic process;catalytic activity;membrane;integral component of membrane;cytosol;apoplast","The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:0198506732];Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose. [EC:5.1.3.3];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose. [GOC:mah, MetaCyc:PWY-3821];The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS01T0218500-02",0.009185685056872051,0.132959864721396,2.41137480435924,"OS01G0218500",null,16.1333737880252,5.8841297501197,71.1639057897704,45.9650365577537,"no","OS01G0218500","Os01g0218500 protein [Source:UniProtKB/TrEMBL;Acc:Q5QNE3]","Similar to ZCN14 protein. (Os01t0218500-01);Similar to SP3D. (Os01t0218500-02);Similar to ZCN14 protein. (Os01t0218500-03);Non-protein coding transcript. (Os01t0218500-04)",1,6494446,6499766,"GO:0048573;GO:0009909;GO:0008429;GO:0010229;GO:0048510;GO:0048572","photoperiodism, flowering;regulation of flower development;phosphatidylethanolamine binding;inflorescence development;regulation of timing of transition from vegetative to reproductive phase;short-day photoperiodism","A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:0582015952, ISBN:0697037754, ISBN:0709408862];Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators];Interacting selectively and non-covalently with phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. [ISBN:0198506732];The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. [GOC:tb];The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs. [GOC:jid, PMID:8974397];Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length. [GOC:jid, GOC:pj, ISBN:0582015952, ISBN:0697037754, ISBN:0709408862]"]
["OS01T0766600-02",9.179647639623631E-3,0.132959864721396,0.340318075049562,"OS01G0766600",null,795.882878629665,747.137812003876,1016.68467943215,936.834584803285,"no","OS01G0766600","Os01g0766600 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZAN2]","BSD domain containing protein. (Os01t0766600-01);BSD domain containing protein. (Os01t0766600-02)",1,32298893,32303035]
["OS02T0181300-01",0.009168712665733521,0.132959864721396,0.7769530199052691,"OS02G0181300",null,73.3862821986831,62.7891460680378,114.157492809395,119.180207873569,"no","OS02G0181300",null,"WRKY transcription factor, Defense response (Os02t0181300-01)",2,4544306,4544841]
["OS04T0103700-01",0.009189940036074321,0.132959864721396,-0.60386300462165,"OS04G0103700",null,208.902099207524,257.729456260268,157.643827923142,149.394948360338,"no","OS04G0103700","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q7XXJ5]","Serine/threonine protein kinase-related domain containing protein. (Os04t0103700-01)",4,246535,249229,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0508800-01",0.0091659614768725,0.132959864721396,-0.442395057744817,"OS04G0508800",null,800.427881165512,706.001544906651,515.851821625621,592.747499061311,"no","OS04G0508800","OSJNBa0043L24.22 protein [Source:UniProtKB/TrEMBL;Acc:Q7XM95]","Similar to Retroelement pol polyprotein-like. (Os04t0508800-01)",4,25424202,25429268]
["OS04T0590200-01",0.009191255377441351,0.132959864721396,-0.297887005149217,"OS04G0590200",null,1001.2829178105,1001.92135537304,773.886699498081,855.605606118765,"no","OS04G0590200","OSJNBa0086O06.16 protein [Source:UniProtKB/TrEMBL;Acc:Q7XLZ3]","Protein of unknown function DUF296 domain containing protein. (Os04t0590200-01)",4,29831246,29832981,"GO:0003680;GO:0005634;GO:0003700;GO:0003677;GO:0006355;GO:0006351","AT DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). [GOC:jl, PMID:2670564];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS06T0162550-00",0.00918335991117739,0.132959864721396,-2.36274230757122,"OS06G0162550",null,22.4235862273754,27.7919171120823,4.87852533373483,4.88443474891674,"no","OS06G0162550","Os06g0162550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT80]","Carotenoid oxygenase domain containing protein. (Os06t0162550-00)",6,3148015,3153030,"GO:0032259;GO:0016702;GO:0008168;GO:0046872;GO:0055114;GO:0003676","methylation;oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;methyltransferase activity;metal ion binding;oxidation-reduction process;nucleic acid binding","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS10T0437200-01",0.009190357631915681,0.132959864721396,0.258589381335122,"OS10G0437200",null,1364.78099811162,1329.89470032631,1665.52854893707,1558.13468490444,"no","OS10G0437200","Os10g0437200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUY4]","Similar to Nucleolar protein-like. (Os10t0437200-01)",10,15637609,15644444,"GO:0000176;GO:0044237;GO:0006396;GO:0090305;GO:0006139;GO:0008408;GO:0005622;GO:0000166;GO:0003676;GO:0003824","nuclear exosome (RNase complex);cellular metabolic process;RNA processing;nucleic acid phosphodiester bond hydrolysis;nucleobase-containing compound metabolic process;3'-5' exonuclease activity;intracellular;nucleotide binding;nucleic acid binding;catalytic activity","A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. [PMID:17174896, PMID:20531386, PMID:26726035];The chemical reactions and pathways by which individual cells transform chemical substances. [GOC:go_curators];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS11T0135000-01",0.0091673603757067,0.132959864721396,1.31310605597908,"OS11G0135000",null,55.3445941601526,36.8051292614348,110.285154911442,118.684719748193,"no","OS11G0135000","Major facilitator superfamily antiporter, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAW4]","Similar to Major facilitator superfamily antiporter. (Os11t0135000-01);Similar to Major facilitator superfamily antiporter. (Os11t0135000-02)",11,1626486,1631411,"GO:0055085;GO:0016021;GO:0016020;GO:0005215","transmembrane transport;integral component of membrane;membrane;transporter activity","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS12T0129700-01",0.00915210078343413,0.132959864721396,-0.43459802910166606,"OS12G0129700",null,564.94672925529,474.523164256881,394.157518517405,374.946131483465,"no","OS12G0129700","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QY75]","Cyclin-like F-box domain containing protein. (Os12t0129700-01)",12,1437032,1445090]
["OS01T0201200-01",0.00920510820512169,0.13302947377003502,0.25014643125088504,"OS01G0201200",null,1283.24068455753,1239.31363714619,1510.3914433243,1489.75259841961,"no","OS01G0201200","Os01g0201200 protein [Source:UniProtKB/TrEMBL;Acc:Q8L650]","Similar to Protein kinase. (Os01t0201200-01)",1,5510522,5514454,"GO:0004871;GO:0004672;GO:0006468;GO:0035556;GO:0005737;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular signal transduction;cytoplasm;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0440900-02",9.2134841089747E-3,0.13302947377003502,0.46178710522012306,"OS03G0440900",null,1588.8202421135,1489.45833743058,2231.16371665484,2008.38559001759,"no","OS03G0440900","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q851U1]","Similar to LRR protein. (Os03t0440900-01);Similar to LRR protein. (Os03t0440900-02)",3,18635904,18638510,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS06T0606800-01",0.00921223247371632,0.13302947377003502,0.57546228861878,"OS06G0606800",null,1307.13040493915,1019.87899685439,1739.88237933953,1727.72204352107,"no","OS06G0606800","Os06g0606800 protein [Source:UniProtKB/TrEMBL;Acc:Q69Q42]","Targeting for Xklp2 family protein. (Os06t0606800-01);Similar to WDL1. (Os06t0606800-02);Similar to WDL1. (Os06t0606800-03)",6,24091282,24096110]
["OS09T0314300-01",0.00920337126025929,0.13302947377003502,"-Inf","OS09G0314300",null,41.165141624314,11.213110758156,0,0,"no","OS09G0314300","Os09g0314300 protein [Source:UniProtKB/TrEMBL;Acc:Q69M23]","Similar to Lysine and histidine specific transporter. (Os09t0314300-01);Peroxin-3 family protein. (Os09t0314300-02)",9,8585972,8589948,"GO:0005779;GO:0007031;GO:0016020;GO:0016021","integral component of peroxisomal membrane;peroxisome organization;membrane;integral component of membrane","The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:mah];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0708400-01",0.00922401714414737,0.133069263099022,-0.5247928380331061,"OS02G0708400",null,6460.03134132297,7866.1418729827,4735.09668892303,5222.43763354178,"no","OS02G0708400","Os02g0708400 protein [Source:UniProtKB/TrEMBL;Acc:Q8S3S1]","Tetratricopeptide-like helical domain containing protein. (Os02t0708400-01)",2,29287709,29291570]
["OS05T0426300-01",0.00922495087862429,0.133069263099022,-0.366761521704886,"OS05G0426300",null,1857.05156338742,2083.37051845486,1448.50752967907,1607.37407990847,"no","OS05G0426300","Os05g0426300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DI08]","Protein of unknown function DUF231, plant domain containing protein. (Os05t0426300-01);Domain of unknown function DUF231, plant domain containing protein. (Os05t0426300-02)",5,20894101,20897851,"GO:0005794;GO:0071554;GO:0016413;GO:0016020;GO:0016021","Golgi apparatus;cell wall organization or biogenesis;O-acetyltransferase activity;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah];Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0508000-01",9.243456531328199E-3,0.133273281710778,1.0309468262812,"OS01G0508000","BGLU1",142.973398188657,126.338479020458,219.961104685697,330.341319242802,"no","OS01G0508000","Beta-glucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5QMT0]","Similar to Beta-glucosidase. (Os01t0508000-01);Similar to Beta-mannosidase 2. (Os01t0508000-02)",1,17756115,17764819,"GO:0004553;GO:0005975;GO:1901657;GO:0102483;GO:0008422;GO:0004565;GO:0008152;GO:0016798;GO:0016787;GO:0004567;GO:0033907;GO:0047701;GO:0080079;GO:0004338","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;beta-galactosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity;beta-mannosidase activity;beta-D-fucosidase activity;beta-L-arabinosidase activity;cellobiose glucosidase activity;glucan exo-1,3-beta-glucosidase activity","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides. [EC:3.2.1.23];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides. [EC:3.2.1.25];Catalysis of the hydrolysis of terminal non-reducing beta-D-fucose residues in beta-D-fucosides. [EC:3.2.1.38];Catalysis of the reaction: H2O + a beta-L-arabinoside = L-arabinose + an alcohol. [EC:3.2.1.88, MetaCyc:BETA-L-ARABINOSIDASE-RXN];Catalysis of the reaction: cellobiose + H2O = 2 D-glucose. [PMID:15604686];Catalysis of the successive hydrolysis of beta-D-glucose units from the non-reducing ends of (1->3)-beta-D-glucans, releasing alpha-glucose. [EC:3.2.1.58]"]
["OS11T0225000-01",9.25853698449664E-3,0.133427746202991,-0.49395485561459,"OS11G0225000",null,746.093869019945,798.760284406514,493.597433579452,603.366267324983,"no","OS11G0225000","Os11g0225000 protein [Source:UniProtKB/TrEMBL;Acc:Q0ITR7]","Serine/threonine protein kinase-related domain containing protein. (Os11t0225000-01)",11,6540629,6541618,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0127100-01",0.00927064825340059,0.133438989766883,"-Inf","OS01G0127100",null,23.9361958774505,8.51922039264308,0,0,"no","OS01G0127100","Os01g0127100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JR13]","Hypothetical protein. (Os01t0127100-01)",1,1490993,1492680]
["OS02T0629200-01",0.00927057745464077,0.133438989766883,-0.788704475419008,"OS02G0629200","PIP2-2",2481.51777214305,3369.08345517601,1592.23950767854,1794.46100194674,"no","OS02G0629200","Probable aquaporin PIP2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q6K215]","Similar to cDNA clone:001-039-E03, full insert sequence. (Os02t0629200-01);Similar to HvPIP2;1 protein. (Os02t0629200-02)",2,25162876,25166544,"GO:0034220;GO:0006833;GO:0015250;GO:0005887;GO:0005886;GO:0006810;GO:0005215;GO:0016020;GO:0016021","ion transmembrane transport;water transport;water channel activity;integral component of plasma membrane;plasma membrane;transport;transporter activity;membrane;integral component of membrane","A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0233400-01",0.00927241998150995,0.133438989766883,-0.6264012937500331,"OS04G0233400","PIP2-6",2981.16879782709,3116.50590748503,1712.70124998331,2237.31310070962,"no","OS04G0233400","Probable aquaporin PIP2-6 [Source:UniProtKB/Swiss-Prot;Acc:Q7XLR1]","Similar to Arabidopsis thaliana (Fragment). (Os04t0233400-01);Similar to cDNA clone:006-302-B10, full insert sequence. (Os04t0233400-02)",4,8948360,8949943,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0034220;GO:0006833;GO:0015250;GO:0005887;GO:0005886","transport;transporter activity;membrane;integral component of membrane;ion transmembrane transport;water transport;water channel activity;integral component of plasma membrane;plasma membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS05T0169000-01",0.009282471455182111,0.133520747598269,-0.280238424347426,"OS05G0169000",null,1092.3366336776,1094.11041279442,872.151084226241,928.289491884688,"no","OS05G0169000","Thioredoxin H4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0DKF1]","Similar to Thioredoxin-like protein. (Os05t0169000-01);Similar to Thioredoxin h-like protein. (Os05t0169000-02)",5,4136117,4139260,"GO:0016020;GO:0016021;GO:0016671;GO:0047134;GO:0015035;GO:0045454;GO:0004791;GO:0034599;GO:0005737;GO:0006662;GO:0005623;GO:0055114;GO:0098869","membrane;integral component of membrane;oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor;protein-disulfide reductase activity;protein disulfide oxidoreductase activity;cell redox homeostasis;thioredoxin-disulfide reductase activity;cellular response to oxidative stress;cytoplasm;glycerol ether metabolic process;cell;oxidation-reduction process;cellular oxidant detoxification","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. [GOC:jl];Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. [EC:1.8.1.8, MetaCyc:1.6.4.4-RXN];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol. [GOC:ai, ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS05T0210600-01",0.00929665380411968,0.133661819775748,-0.283124614913914,"OS05G0210600",null,1150.73767503213,1253.72426083394,999.121988348894,976.886949783349,"no","OS05G0210600","Os05g0210600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DJZ3]","Molecular chaperone, heat shock protein, Hsp40, DnaJ domain containing protein. (Os05t0210600-01)",5,6859187,6862484]
["OS06T0133600-01",0.009305009805055811,0.133719030839165,"Inf","OS06G0133600",null,0,0,39.8560737714505,79.8087051785968,"no","OS06G0133600","Protein EXORDIUM-like 3 [Source:Projected from Arabidopsis thaliana (AT5G51550) UniProtKB/Swiss-Prot;Acc:Q9FHM9]","Phosphate-induced protein 1 conserved region family protein. (Os06t0133600-01);Phosphate-induced protein 1 conserved region family protein. (Os06t0133600-02)",6,1789916,1791294,"GO:0080167;GO:0009505;GO:0009506","response to karrikin;plant-type cell wall;plasmodesma","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS02T0603600-01",0.00932264564984424,0.133846555401335,-0.23974627068714,"OS02G0603600",null,2145.52950039205,2086.45244393299,1742.60924921008,1841.43190034161,"no","OS02G0603600","Os02g0603600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLP4]","Conserved hypothetical protein. (Os02t0603600-01)",2,23643455,23651476,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS05T0149600-01",9.319868391794571E-3,0.133846555401335,0.40620027141254805,"OS05G0149600",null,1344.65589491088,1344.23003738892,1932.9140436046,1630.37329726742,"no","OS05G0149600","Os05g0149600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WHX8]","Similar to CULLIN1-like protein 1. (Os05t0149600-01);Similar to predicted protein. (Os05t0149600-02)",5,2834206,2840848,"GO:0031461;GO:0031625;GO:0006511;","cullin-RING ubiquitin ligase complex;ubiquitin protein ligase binding;ubiquitin-dependent protein catabolic process;","Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity. [PMID:15571813, PMID:15688063];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];"]
["OS08T0335600-01",0.00933349723870157,0.13393941175989202,-1.43024964401703,"OS08G0335600",null,361.835141396285,477.609242222452,113.181787742648,198.30805080602,"no","OS08G0335600","Auxin-induced protein-like [Source:UniProtKB/TrEMBL;Acc:Q6YUI4]","Protein of unknown function DUF568, DOMON-like domain containing protein. (Os08t0335600-01)",8,15008765,15009689]
["OS05T0592300-01",0.00934996112607927,0.134112681842241,0.8380273306018251,"OS05G0592300",null,401.829994144744,301.032428468077,561.493817715879,694.945993236249,"no","OS05G0592300","Os05g0592300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DFG5]","Protein of unknown function DUF1637 family protein. (Os05t0592300-01);Similar to Cupin, RmlC-type. (Os05t0592300-02)",5,29507007,29509972,"GO:0016702;GO:0055114","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS03T0851500-02",0.00935888028646541,0.134177621075594,-0.367329066604473,"OS03G0851500",null,1121.67939220043,1221.42158597805,861.796766605461,954.613458510768,"no","OS03G0851500","Os03g0851500 protein [Source:UniProtKB/TrEMBL;Acc:Q10AI2]","Homolog of Rad52 (Radiation sensitive 52), Mediation of homologous recombination and DNA repair, (Os03t0851500-01)",3,35846462,35854299,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS01T0924300-01",0.00938041341726209,0.134423260189583,0.40946412005194105,"OS01G0924300",null,379.277411476089,400.759676935986,531.161366918902,504.877945193481,"no","OS01G0924300","Beta transducin-like protein HET-E2C-like [Source:UniProtKB/TrEMBL;Acc:Q5JJP8]","WD40 repeat-like domain containing protein. (Os01t0924300-01);Similar to periodic tryptophan protein 1. (Os01t0924300-02)",1,40463040,40467753,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS09T0466100-02",9.390991076652231E-3,0.13451174841719601,0.6111629622995151,"OS09G0466100","CYCD4-1",388.875089327843,400.876339324802,679.147625023496,527.189807388049,"no","OS09G0466100","Cyclin-D4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q6YXH8]","Cyclin, A/B/D/E domain containing protein. (Os09t0466100-01);Similar to cDNA clone:001-123-E03, full insert sequence. (Os09t0466100-02)",9,17680931,17683507,"GO:0051301;GO:0007049;GO:0005634","cell division;cell cycle;nucleus","The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS03T0424200-01",0.009408355189168731,0.13457119276193,0.347189467213589,"OS03G0424200","PUB57",471.216426962356,470.507989121948,614.461714294288,583.487133984017,"no","OS03G0424200","U-box domain-containing protein 57 [Source:UniProtKB/Swiss-Prot;Acc:Q0DR28]","Serine/threonine protein kinase-related domain containing protein. (Os03t0424200-01)",3,17702709,17710049,"GO:0004842;GO:0016567;GO:0006468;GO:0005524;GO:0004672;GO:0016740","ubiquitin-protein transferase activity;protein ubiquitination;protein phosphorylation;ATP binding;protein kinase activity;transferase activity","Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0784500-01",9.40029374037403E-3,0.13457119276193,0.28479391143659805,"OS03G0784500",null,789.706015298934,801.329831345093,948.884060524749,989.373445608262,"no","OS03G0784500","Os03g0784500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DN00]","Conserved hypothetical protein. (Os03t0784500-01)",3,32560362,32562816]
["OS09T0567366-01",9.405036255967841E-3,0.13457119276193,1.57731386457033,"OS09G0567366",null,26.1832294271749,23.5040682902507,61.7370905065559,86.5366227197462,"no","OS09G0567366","Os09g0567350 protein [Source:UniProtKB/TrEMBL;Acc:Q652L5]","Similar to Aldo-keto reductase/ oxidoreductase. (Os09t0567366-01);Similar to Aldo-keto reductase/ oxidoreductase. (Os09t0567366-02);Similar to Aldo-keto reductase/ oxidoreductase. (Os09t0567366-03)",9,22649087,22652058,"GO:0009505;GO:0009507;GO:0009570;GO:0009941","plant-type cell wall;chloroplast;chloroplast stroma;chloroplast envelope","A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS06T0178900-01",0.009418597108237671,0.134654646163256,-0.44097630688419,"OS06G0178900",null,18042.0355446742,20883.4353092089,13501.0132839339,15172.8875458088,"no","OS06G0178900","Os06g0178900 protein [Source:UniProtKB/TrEMBL;Acc:Q8H616]","Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2). (Os06t0178900-01)",6,3919532,3924302,"GO:0004427;GO:0015992;GO:0009678;GO:0055085;GO:0016787;GO:0016020;GO:0016021","inorganic diphosphatase activity;proton transport;hydrogen-translocating pyrophosphatase activity;transmembrane transport;hydrolase activity;membrane;integral component of membrane","Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. [EC:3.6.1.1, RHEA:24579];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Catalysis of the hydrolysis of pyrophosphate, which generates a proton motive force. [GOC:mtg_transport, ISBN:0815340729, TC:3.A.10.-.-];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0216300-01",0.0094363269287543,0.13484502353943,-0.874810195138442,"OS06G0216300",null,154.521600081951,135.052718461815,90.7743518978803,67.1379388802442,"no","OS06G0216300","Os06g0216300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WTZ2]","Similar to 12-oxophytodienoic acid reductase. (Os06t0216300-01)",6,5918167,5919685,"GO:0010181;GO:0016491;GO:0055114;GO:0003824","FMN binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0121000-01",0.00944645358909401,0.13492662461617602,-0.5810101928486191,"OS12G0121000",null,222.208456003956,235.899367342228,140.722158318602,165.520871403972,"no","OS12G0121000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QYG0]","Conserved hypothetical protein. (Os12t0121000-01)",12,988599,989874]
["OS01T0819700-01",0.00949584393192808,0.135529983165532,-1.1398591769256199,"OS01G0819700",null,71.3477743598308,55.5838342241646,28.295446935662,29.3066084935005,"no","OS01G0819700",null,"Hypothetical conserved gene. (Os01t0819700-01)",1,34943808,34945708]
["OS09T0548300-01",0.009497567882868681,0.135529983165532,0.369111754135633,"OS09G0548300",null,399.443007201483,403.80938251146,520.238397768653,517.208164713642,"no","OS09G0548300","Protein DETOXIFICATION 45, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G38380) UniProtKB/Swiss-Prot;Acc:Q9SVE7]","Similar to predicted protein. (Os09t0548300-01)",9,21681127,21687492,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021;GO:0009507","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane;chloroplast","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS03T0209400-01",0.009524531688995011,0.13574193948808302,-0.29188071500788204,"OS03G0209400",null,1230.23948074737,1283.37553129362,974.72936168022,1078.48319256082,"no","OS03G0209400","Got1-like family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10Q55]","Vesicle transport protein, Regulation of protein export from ER in developing endosperm cells (Os03t0209400-01)",3,5707404,5710078,"GO:0016192;GO:0016020;GO:0016021","vesicle-mediated transport;membrane;integral component of membrane","A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0700800-03",0.00952575013951459,0.13574193948808302,-0.45579595523467303,"OS03G0700800",null,367.957890130066,347.206406064745,270.751835762135,250.680032347778,"no","OS03G0700800","Natural resistance-associated macrophage protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10EG4]","Similar to EIN2. (Os03t0700800-01);Hypothetical conserved gene. (Os03t0700800-02);Similar to Ethylene insensitive 2. (Os03t0700800-03)",3,28116620,28124217,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0009873;GO:0005622","transport;transporter activity;membrane;integral component of membrane;ethylene-activated signaling pathway;intracellular","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription. [GOC:jy, PMID:24012247];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS04T0402100-02",0.00952420876574662,0.13574193948808302,-0.518712483833309,"OS04G0402100",null,8272.53104084627,9618.37313216066,5737.17965698688,6750.57255899457,"no","OS04G0402100","Calnexin [Source:UniProtKB/TrEMBL;Acc:Q7XV86]","Similar to Calnexin (Fragment). (Os04t0402100-01);Similar to calnexin. (Os04t0402100-02)",4,19913312,19916747,"GO:0005783;GO:0006457;GO:0051082;GO:0005509;GO:0016020;GO:0016021","endoplasmic reticulum;protein folding;unfolded protein binding;calcium ion binding;membrane;integral component of membrane","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0620066-00",0.00953999754133482,0.135775963294218,0.40314643504422104,"OS04G0620066",null,992.753317521074,833.757513362469,1205.97146249925,1209.38604383179,"no","OS04G0620066","Os04g0620066 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WF03]","NA",4,31505399,31506769,"GO:0000325;GO:0055085;GO:0042626;GO:0005774;GO:0016887;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020","plant-type vacuole;transmembrane transport;ATPase activity, coupled to transmembrane movement of substances;vacuolar membrane;ATPase activity;transport;integral component of membrane;ATP binding;nucleotide binding;membrane","A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0233200-01",0.009545914151478771,0.135775963294218,-0.301897513864447,"OS06G0233200",null,817.441643379776,797.730954143103,642.989638986251,667.213786702027,"no","OS06G0233200","Os06g0233200 protein [Source:UniProtKB/TrEMBL;Acc:Q67UK4]","Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8). (Os06t0233200-01)",6,6923330,6924997,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0496700-01",0.00954089382769448,0.135775963294218,0.8766052530519811,"OS07G0496700",null,44.8471724547508,53.5251736973437,88.789161073974,91.8273732796348,"no","OS07G0496700","Protein EXORDIUM-like 7 [Source:Projected from Arabidopsis thaliana (AT2G35150) UniProtKB/Swiss-Prot;Acc:O82176]","Phosphate-induced protein 1 conserved region family protein. (Os07t0496700-01)",7,18618291,18619651]
["OS10T0194200-01",0.009544399022642971,0.135775963294218,0.28001330259260404,"OS10G0194200","CAD1",1266.32310052888,1399.33658269627,1570.13338458507,1666.52681031302,"no","OS10G0194200","Probable cinnamyl alcohol dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H859]","Similar to Mannitol dehydrogenase. (Os10t0194200-01)",10,6540786,6544129,"GO:0009809;GO:0009699;GO:0052747;GO:0045551;GO:0055114;GO:0046872;GO:0016491;GO:0008270","lignin biosynthetic process;phenylpropanoid biosynthetic process;sinapyl alcohol dehydrogenase activity;cinnamyl-alcohol dehydrogenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;zinc ion binding","The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers. [GOC:tair_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid. [GOC:jl];Catalysis of the reaction: sinapaldehyde + NADPH + H+ = sinapyl-alcohol + NADP+. [GOC:mengo_curators, MetaCyc:RXN-1125];Catalysis of the reaction: cinnamyl alcohol + NADP+ = cinnamaldehyde + NADPH + H+. [EC:1.1.1.195];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0294700-01",9.58658594562504E-3,0.13582651631383502,-0.649214081550986,"OS01G0294700",null,16185.980567859,16942.0180222453,9093.44268587658,12029.8825954556,"no","OS01G0294700","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q9FYP0]","Haem peroxidase, plant/fungal/bacterial family protein. (Os01t0294700-01)",1,10748692,10750233,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0880200-03",0.00956697366409299,0.13582651631383502,-0.248969444772825,"OS01G0880200",null,2521.54239487633,2620.72880143435,2090.42998868899,2236.77736147399,"no","OS01G0880200","Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q5NA53]","Glycosyl transferase, family 8 protein. (Os01t0880200-01);Similar to secondary cell wall-related glycosyltransferase family 8. (Os01t0880200-02);Similar to cDNA clone:J013112C08, full insert sequence. (Os01t0880200-03);Similar to cDNA clone:J013112C08, full insert sequence. (Os01t0880200-04)",1,38197022,38202612,"GO:0016757;GO:0016740;GO:0016020;GO:0016021","transferase activity, transferring glycosyl groups;transferase activity;membrane;integral component of membrane","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0895500-01",0.009568130070158021,0.13582651631383502,-0.5908636006999181,"OS01G0895500",null,206.908545643509,215.130025052785,128.7930688106,151.417477216419,"no","OS01G0895500","RHOMBOID-like protein 13 [Source:Projected from Arabidopsis thaliana (AT3G59520) UniProtKB/Swiss-Prot;Acc:Q9M1B5]","Peptidase S54, rhomboid domain containing protein. (Os01t0895500-01)",1,38928823,38930008,"GO:0006508;GO:0004252;GO:0055114;GO:0016021;GO:0016020","proteolysis;serine-type endopeptidase activity;oxidation-reduction process;integral component of membrane;membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0123100-01",9.589480089321251E-3,0.13582651631383502,-0.27735287678088805,"OS03G0123100",null,3540.88811608646,3956.21145947115,3031.51564238283,3154.36796085043,"no","OS03G0123100","Os03g0123100 protein [Source:UniProtKB/TrEMBL;Acc:Q8H8G9]","Similar to SUMO E2 conjugating enzyme SCE1. (Os03t0123100-01)",3,1318268,1321639,"GO:0016925;GO:0019789;GO:0005634;GO:0005737;GO:0005524;GO:0000166","protein sumoylation;SUMO transferase activity;nucleus;cytoplasm;ATP binding;nucleotide binding","The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein. [GOC:jl, PMID:11265250];Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages. [GOC:rn, PMID:11031248, PMID:11265250];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS06T0128300-02",0.00957854245146288,0.13582651631383502,0.32188020465446404,"OS06G0128300",null,678.497930757806,753.534812065609,872.842699935993,917.138809206833,"no","OS06G0128300","Os06g0128300 protein [Source:UniProtKB/TrEMBL;Acc:Q658I3]","Mitochondrial half ABC (ATP-binding cassette) transporter, Iron homeostasis, Meristem maintenance (Os06t0128300-01);Similar to STA1 (STARIK 1); ATPase, coupled to transmembrane movement of substances. (Os06t0128300-02);Similar to Mitochondrial half-ABC transporter. (Os06t0128300-03)",6,1492909,1502583,"GO:0005743;GO:0042626;GO:0016887;GO:0055085;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020;GO:0006879","mitochondrial inner membrane;ATPase activity, coupled to transmembrane movement of substances;ATPase activity;transmembrane transport;transport;integral component of membrane;ATP binding;nucleotide binding;membrane;cellular iron ion homeostasis","The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. [GOC:ai, GOC:mah]"]
["OS06T0549300-00",0.009588364580665821,0.13582651631383502,0.742802422873989,"OS06G0549300",null,372.982383905227,350.948005576609,514.122618830026,697.319358385286,"no","OS06G0549300","Os06g0549300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXN6]","Similar to reticuline oxidase. (Os06t0549300-00)",6,20784441,20786120,"GO:0016614;GO:0050660;GO:0016491;GO:0055114;GO:0003824","oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0294100-00",0.00955603677229243,0.13582651631383502,-0.9489445125631991,"OS07G0294100",null,117.214200734008,141.018246087232,54.6394837378301,79.1278429324513,"no","OS07G0294100","Os07g0294100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNA1]","Similar to NB-ARC domain containing protein. (Os07t0294100-00)",7,11432125,11435900,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS08T0109400-01",0.00958025112796877,0.13582651631383502,0.407099025985925,"OS08G0109400","IAA25",333.907599121234,332.340174666018,460.950233606818,422.505490350671,"no","OS08G0109400","Auxin-responsive protein IAA25 [Source:UniProtKB/Swiss-Prot;Acc:P0C128]","AUX/IAA protein family protein. (Os08t0109400-01)",8,468151,473510,"GO:0005634;GO:0009734;GO:0006355;GO:0006351","nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0556000-01",0.00958827106161102,0.13582651631383502,-0.24954188201929203,"OS09G0556000",null,1885.61975093839,1970.13812416761,1565.03092706213,1678.29177972779,"no","OS09G0556000","Os09g0556000 protein [Source:UniProtKB/TrEMBL;Acc:B9G505]","Signal peptidase 22 kDa subunit family protein. (Os09t0556000-01)",9,22092230,22095269,"GO:0005787;GO:0006465;GO:0008233;GO:0045047;GO:0016021","signal peptidase complex;signal peptide processing;peptidase activity;protein targeting to ER;integral component of membrane","A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space. [GOC:sgd_curators, PMID:1846444, PMID:7615509];The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. [GOC:mah, ISBN:0815316194];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane. [ISBN:0716731363];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0106000-00",0.00960821248346911,0.135943702326544,-2.78531893122096,"OS08G0106000",null,23.4428401468015,23.6745960584405,2.9271152002409,3.9075477991334,"no","OS08G0106000","Os08g0106000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XAP4]","Similar to Bx2-like protein. (Os08t0106000-00)",8,308997,309927,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS12T0597500-01",0.009604747997084532,0.135943702326544,0.295441348135406,"OS12G0597500","UAH",2807.66299385805,2775.18851192928,3212.49119668121,3639.12116531136,"no","OS12G0597500","Probable ureidoglycolate hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q2QMN7]","Peptidase M20 domain containing protein. (Os12t0597500-01);Similar to Amidase, hydantoinase/carbamoylase family protein, expressed. (Os12t0597500-02)",12,25087027,25091564,"GO:0016813;GO:0016787;GO:0008152;GO:0005783;GO:0046872;GO:0006144;GO:0000256;GO:0004848;GO:0006145;GO:0010136","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines;hydrolase activity;metabolic process;endoplasmic reticulum;metal ion binding;purine nucleobase metabolic process;allantoin catabolic process;ureidoglycolate hydrolase activity;purine nucleobase catabolic process;ureide catabolic process","Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [CHEBI:26386, GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: (S)-ureidoglycolate + H(2)O + 2 H(+) = CO(2) + glyoxylate + 2 NH(4)(+). [EC:3.5.3.19, RHEA:19812];The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium. [GOC:pz]"]
["OS12T0629700-01",0.00961110228545876,0.135943702326544,1.46323716415969,"OS12G0629700",null,69.3092665209785,42.2025407998287,123.803391492213,183.664048481341,"no","OS12G0629700","Os12g0629700 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLS9]","Similar to Thaumatin-like protein precursor. (Os12t0629700-01)",12,26946904,26947698]
["OS08T0390000-01",0.009622219610428391,0.136037970170203,4.29670972437094,"OS08G0390000","BIP131",105.997389433342,49.894398483173,718.751899102868,2345.057524863,"no","OS08G0390000","Proton pump-interactor BIP131 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZBF6]","Moesin domain containing protein. (Os08t0390000-01);Moesin domain containing protein. (Os08t0390000-02)",8,18474191,18480781,"GO:0005515;GO:0005886;GO:0010155;GO:0005783;GO:0016020;GO:0016021","protein binding;plasma membrane;regulation of proton transport;endoplasmic reticulum;membrane;integral component of membrane","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:sm];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0161500-01",0.00964201153626929,0.136129869393975,0.32310897099239805,"OS08G0161500",null,530.0120381016,560.984993558699,681.042136589383,683.820864848344,"no","OS08G0161500","Os08g0161500 protein [Source:UniProtKB/TrEMBL;Acc:Q84SE0]","Alpha/beta hydrolase fold-1 domain containing protein. (Os08t0161500-01)",8,3596518,3601575,"GO:0006508;GO:0008233;GO:0005886","proteolysis;peptidase activity;plasma membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS08T0178300-02",0.00963784401629855,0.136129869393975,"-Inf","OS08G0178300",null,16.1311287967314,60.8775327217043,0,0,"no","OS08G0178300","Os08g0178300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZKE8]","Protein of unknown function DUF2050, pre-mRNA-splicing factor domain containing protein. (Os08t0178300-01);Hypothetical conserved gene. (Os08t0178300-02)",8,4586478,4591217,"GO:0005634;GO:0005829","nucleus;cytosol","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS11T0528500-01",0.009642086847622461,0.136129869393975,-1.03603517179022,"OS11G0528500",null,118.233454653434,139.988915823822,76.1049952062634,49.8212344389508,"no","OS11G0528500","Os11g0528500 protein [Source:UniProtKB/TrEMBL;Acc:Q2R3B6]","Similar to Rubredoxin 1 (Rd-1). (Os11t0528500-01)",11,19180636,19182258,"GO:0005506;GO:0016020;GO:0016021","iron ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0120800-01",0.009658523802667721,0.136184211066591,-0.652271947772717,"OS01G0120800",null,1725.52248723624,1606.18759432111,995.74979871058,1124.14242310435,"no","OS01G0120800","Eukaryotic translation initiation factor 3 subunit A [Source:Projected from Arabidopsis thaliana (AT4G11420) UniProtKB/Swiss-Prot;Acc:Q9LD55]","Similar to Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a). (Os01t0120800-01);Similar to Translation initiation factor 3. (Os01t0120800-02);Similar to Translation initiation factor 3. (Os01t0120800-03);Similar to Translation initiation factor 3. (Os01t0120800-04);Similar to Translation initiation factor 3. (Os01t0120800-05);Similar to Translation initiation factor 3. (Os01t0120800-06)",1,1171902,1179370,"GO:0003743;GO:0003729;GO:0033290;GO:0016282;GO:0005852;GO:0006446;GO:0001731;GO:0006413;GO:0003723;GO:0005737;GO:0006412;GO:0043614;GO:0002188;GO:0001732;GO:0071540;GO:0071541;GO:0016020;GO:0016021;","translation initiation factor activity;mRNA binding;eukaryotic 48S preinitiation complex;eukaryotic 43S preinitiation complex;eukaryotic translation initiation factor 3 complex;regulation of translational initiation;formation of translation preinitiation complex;translational initiation;RNA binding;cytoplasm;translation;multi-eIF complex;translation reinitiation;formation of cytoplasmic translation initiation complex;eukaryotic translation initiation factor 3 complex, eIF3e;eukaryotic translation initiation factor 3 complex, eIF3m;membrane;integral component of membrane;","Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];A protein complex composed of the small ribosomal subunit, eIF3, eIF1A, methionyl-initiatior methionine and a capped mRNA. The complex is initially positioned at the 5'-end of the capped mRNA. [GOC:hjd, PMID:15145049];A protein complex composed of the 40S ribosomal subunit plus eIF1A, eIF3, and eIF2-GTP-bound methionyl-initiator methionine tRNA. [GOC:hjd, PMID:15145049];A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. [PMID:15904532];Any process that modulates the frequency, rate or extent of translational initiation. [GOC:go_curators];The joining of the small ribosomal subunit, ternary complex, and mRNA. [GOC:hjd];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];A multifactor complex composed of multiple translation initiation factors and the initiatior tRNAiMet, which is ready to bind to the small (40S) ribosome to form the 43S preinitiation complex. In S. cerevisiae, this complex is composed of eIF1, eIF2, eIF3, and eIF5. [GOC:krc];A gene-specific translational control mechanism where the small ribosomal subunit remains attached to the mRNA following termination of translation, then resumes scanning on the same mRNA molecule and initiates again at a downstream start site. Reinitiation depends on de novo recruitment of the ternary complex that is required to recognize the next AUG codon. [PMID:18056426, PMID:18765792];Joining of the large subunit, with release of IF2/eIF2 and IF3/eIF3. This leaves the functional ribosome at the AUG, with the methionyl/formyl-methionyl-tRNA positioned at the P site. [GOC:hjd];An eukaryotic translation initiation factor 3 complex that contains the PCI-domain protein eIF3e. [PMID:15904532, PMID:19061185];An eukaryotic translation initiation factor 3 complex that contains the PCI-domain protein eIF3m. [PMID:15904532, PMID:19061185];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS03T0220100-01",0.00966822315407948,0.136184211066591,-1.63843291703259,"OS03G0220100",null,349.755644096941,408.335244312047,79.4490587400967,164.053664702501,"no","OS03G0220100","3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:Q10PV5]","beta-ketoacyl-CoA synthase, Homolog of Arabidopsis CER6, Leaf cuticular wax synthesis, Very-long-chain fatty acid (VLCFA) elongation (Os03t0220100-01)",3,6302865,6304849,"GO:0016746;GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring acyl groups;fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0687900-03",0.00965511515005071,0.136184211066591,0.278033139464237,"OS04G0687900","TULP7",833.749699747328,833.757445032909,1001.07337182698,1020.84686113435,"no","OS04G0687900","Tubby-like F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q7XSV4]","Similar to T24D18.17 protein (Tubby-like protein TULP8). (Os04t0687900-01);Similar to CAA303719.1 protein. (Os04t0687900-02);Similar to T24D18.17 protein (Tubby-like protein TULP8). (Os04t0687900-03)",4,35176157,35179785,"GO:0035091;","phosphatidylinositol binding;","Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, ISBN:0198506732, PMID:11395417];"]
["OS07T0148800-01",0.0096633566697763,0.136184211066591,-0.455661446710302,"OS07G0148800",null,5258.33097031953,6367.43700945708,4194.55608194521,4282.6723878502,"no","OS07G0148800","Os07g0148800 protein [Source:UniProtKB/TrEMBL;Acc:Q0D8L5]","Conserved hypothetical protein. (Os07t0148800-01)",7,2542557,2545656]
["OS11T0414000-02",0.009667127008100511,0.136184211066591,-0.24292091246935202,"OS11G0414000",null,4116.62624107785,4248.62118063913,3662.30161347394,3406.60606206007,"no","OS11G0414000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R678]","eIF4-gamma/eIF5/eIF2-epsilon domain containing protein. (Os11t0414000-01);Similar to predicted protein. (Os11t0414000-02)",11,12633341,12640831]
["OS03T0286300-02",0.009695392602407031,0.136503979165318,-0.36268532636284,"OS03G0286300",null,5516.40918155132,6085.16407096421,4238.19275432556,4784.53231654174,"no","OS03G0286300","Os03g0286300 protein [Source:UniProtKB/TrEMBL;Acc:Q8GZZ6]","Similar to Phosphate/phosphoenolpyruvate translocator protein-like. (Os03t0286300-01);Similar to organic anion transporter. (Os03t0286300-02)",3,9872301,9876576,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0107400-01",0.00970875069800056,0.13656618385143302,0.581630947316479,"OS01G0107400",null,346.546332604892,446.729334320138,599.082910982638,588.085943769576,"no","OS01G0107400","Os01g0107300 protein [Source:UniProtKB/TrEMBL;Acc:C7IWH4]","Conserved hypothetical protein. (Os01t0107400-01)",1,392083,392578]
["OS12T0288400-01",0.009707083418857511,0.13656618385143302,-0.23261513722948401,"OS12G0288400",null,2350.39953819671,2275.84921240052,2004.09820709827,1933.25927362125,"no","OS12G0288400","Copine, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QTN7]","Similar to Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb protein). (Os12t0288400-01)",12,11045896,11057114]
["OS11T0569800-01",0.00971516161525477,0.136593473386684,-0.411753704907494,"OS11G0569800",null,484.926948280692,522.949662376821,351.339308579939,406.290669914096,"no","OS11G0569800","NA","Protein kinase, catalytic domain domain containing protein. (Os11t0569800-01)","NA","NA","NA","NA","NA","NA"]
["OS02T0221600-00",0.00973645849991751,0.13682993564373502,-0.336592766042736,"OS02G0221600",null,704.304458323473,781.261669928536,590.301565381915,586.132169870009,"no","OS02G0221600","Os02g0221600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VGP5]","Similar to predicted protein. (Os02t0221600-00)",2,6791027,6795032,"GO:0005509;GO:0016020;GO:0016021;GO:0005886","calcium ion binding;membrane;integral component of membrane;plasma membrane","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS02T0656500-01",0.00974126217223138,0.136834502016558,0.32963234556062704,"OS02G0656500",null,1171.48863944301,1072.65011141929,1454.12786931512,1366.06576891232,"no","OS02G0656500","Os02g0656500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DYZ8]","DnaJ-like protein. (Os02t0656500-01);Similar to DnaJ-like protein. (Os02t0656500-02)",2,26519337,26523355,"GO:0031072;GO:0006457;GO:0051082;GO:0046872;GO:0009408;GO:0005524","heat shock protein binding;protein folding;unfolded protein binding;metal ion binding;response to heat;ATP binding","Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. [GOC:mah, GOC:vw];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS05T0125500-01",0.00974575078462352,0.136834640612049,0.36547879486963203,"OS05G0125500",null,1341.33815796482,1502.82218457927,1732.85219854261,1931.30549972168,"no","OS05G0125500","Isovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q75IM9]","Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD). (Os05t0125500-01)",5,1470049,1473944,"GO:0003995;GO:0050660;GO:0009451;GO:0001522;GO:0009982;GO:0016627;GO:0005739;GO:0016866;GO:0055114;GO:0016491;GO:0003723;GO:0008152;GO:0006552;GO:0005524;GO:0008470;GO:0009083;GO:0005759","acyl-CoA dehydrogenase activity;flavin adenine dinucleotide binding;RNA modification;pseudouridine synthesis;pseudouridine synthase activity;oxidoreductase activity, acting on the CH-CH group of donors;mitochondrion;intramolecular transferase activity;oxidation-reduction process;oxidoreductase activity;RNA binding;metabolic process;leucine catabolic process;ATP binding;isovaleryl-CoA dehydrogenase activity;branched-chain amino acid catabolic process;mitochondrial matrix","Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. [EC:1.3.99.3];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. [GOC:hjd, GOC:mah];Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. [EC:5.4.99.12, GOC:mah];Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the transfer of a functional group from one position to another within a single molecule. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reaction: 3-methylbutanoyl-CoA + ETF = 3-methylbut-2-enoyl-CoA + reduced ETF. [EC:1.3.99.10];The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [GOC:ai];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732]"]
["OS03T0136900-02",9.76985247069234E-3,0.137110028794025,-0.44680028703982905,"OS03G0136900",null,7532.45142603827,8971.96199406548,5828.67957845525,6280.08415472688,"no","OS03G0136900","Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:Q10S34]","Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase). (Os03t0136900-01);Similar to Aconitate hydratase 2, mitochondrial. (Os03t0136900-02)",3,2026817,2033506,"GO:0008152;GO:0051539;GO:0051536;GO:0003994;GO:0005737;GO:0046872;GO:0006097;GO:0016829","metabolic process;4 iron, 4 sulfur cluster binding;iron-sulfur cluster binding;aconitate hydratase activity;cytoplasm;metal ion binding;glyoxylate cycle;lyase activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Catalysis of the reaction: citrate = isocitrate. The reaction occurs in two steps: (1) citrate = cis-aconitate + H2O, (2) cis-aconitate + H2O = isocitrate. This reaction is the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate. [EC:4.2.1.3, GOC:pde, GOC:vw];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS04T0282200-01",0.009778484160486751,0.13716815797575302,1.8313412205962099,"OS04G0282200",null,41.8969674617138,19.5572750047987,126.868460299911,91.8273732796348,"no","OS04G0282200","OSJNBa0071G03.3 protein [Source:UniProtKB/TrEMBL;Acc:Q7XX26]","Protein of unknown function DUF1685 family protein. (Os04t0282200-01)",4,12047171,12048694]
["OS03T0603300-01",0.00979347487811143,0.13731539443600801,-0.38830085129775904,"OS03G0603300",null,550.397116490123,501.283838280892,382.476386164811,421.038275356623,"no","OS03G0603300","Os03g0603300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DQE7]","Similar to Bromodomain associated family protein, expressed. (Os03t0603300-01)",3,22595988,22603461]
["OS09T0294000-01",0.009800375071429931,0.137349109716664,1.33849434732223,"OS09G0294000",null,47.6285917254169,80.1657466181964,140.580275039397,182.595323133275,"no","OS09G0294000","Aspartate kinase-homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q69LG7]","Similar to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)]. (Os09t0294000-01);Similar to Aspartate kinase-homoserine dehydrogenase. (Os09t0294000-02)",9,6995055,7009477,"GO:0004072;GO:0008652;GO:0016310;GO:0006520;GO:0050661;GO:0016491;GO:0055114;GO:0009067;GO:0004412;GO:0009570;GO:0016301;GO:0009090","aspartate kinase activity;cellular amino acid biosynthetic process;phosphorylation;cellular amino acid metabolic process;NADP binding;oxidoreductase activity;oxidation-reduction process;aspartate family amino acid biosynthetic process;homoserine dehydrogenase activity;chloroplast stroma;kinase activity;homoserine biosynthetic process","Catalysis of the reaction: L-aspartate + ATP = 4-phospho-L-aspartate + ADP + H(+). [EC:2.7.2.4, RHEA:23779];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways resulting in the formation of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai];Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+. [EC:1.1.1.3];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of homoserine, alpha-amino-gamma-hydroxybutyric acid. [GOC:go_curators, ISBN:0198506732]"]
["OS01T0771000-01",0.00981597804240213,0.137378727050605,1.9942707492393401,"OS01G0771000",null,26.50060190508,65.8771368582692,198.068128549634,169.978329262303,"no","OS01G0771000","Os01g0771000 protein [Source:UniProtKB/TrEMBL;Acc:Q94EE1]","Protein of unknown function DUF567 family protein. (Os01t0771000-01)",1,32534857,32535912]
["OS02T0190500-01",0.009810586539972311,0.137378727050605,-0.42998388169196705,"OS02G0190500",null,928.540320597226,998.450355508142,653.722394720468,776.625125077762,"no","OS02G0190500","Os02g0190500 protein [Source:UniProtKB/TrEMBL;Acc:Q6YUU3]","Serine/threonine protein kinase-related domain containing protein. (Os02t0190500-01)",2,5019765,5028028,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0585900-01",0.00981313956429483,0.137378727050605,-0.24215926757168402,"OS05G0585900",null,3451.19377117696,3722.05823249221,2962.24058264379,3102.59295251192,"no","OS05G0585900","Os05g0585900 protein [Source:UniProtKB/TrEMBL;Acc:Q6I583]","Mitochondrial carrier protein domain containing protein. (Os05t0585900-01)",5,29156958,29161630,"GO:0022857;GO:0006839;GO:0005634;GO:0016021;GO:0005743;GO:0006810;GO:0055085;GO:0016020;GO:0005347;GO:0015217;GO:0080122;GO:0009060;GO:0015866;GO:0015867;GO:0080121;GO:0005739;GO:0005774;GO:0009536","transmembrane transporter activity;mitochondrial transport;nucleus;integral component of membrane;mitochondrial inner membrane;transport;transmembrane transport;membrane;ATP transmembrane transporter activity;ADP transmembrane transporter activity;AMP transmembrane transporter activity;aerobic respiration;ADP transport;ATP transport;AMP transport;mitochondrion;vacuolar membrane;plastid","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];Transport of substances into, out of or within a mitochondrion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. [GOC:ai];Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other. [GOC:ai];Enables the transfer of AMP, adenosine monophosphate, from one side of a membrane to the other. [PMID:18923018];The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:das, GOC:jl, ISBN:0140513590];The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of AMP, adenosine monophosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:18923018];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684]"]
["OS01T0303600-01",0.00983995210361134,0.137419156208429,-0.550528569156027,"OS01G0303600",null,362.854395315711,443.641343529907,258.561842687946,292.089197985221,"no","OS01G0303600","Os01g0303600 protein [Source:UniProtKB/TrEMBL;Acc:Q657H7]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0303600-01)",1,11231975,11234809,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0595201-00",0.00984567491189478,0.137419156208429,-1.38261143805366,"OS01G0595201",null,109.060169378599,181.16212636024,47.8095482706014,63.4976517359177,"no","OS01G0595201","Os01g0595201 protein [Source:UniProtKB/TrEMBL;Acc:Q8L3Y3]","Similar to metal ion binding protein. (Os01t0595201-00)",1,23324460,23325125,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0601200-01",0.00983031648803098,0.137419156208429,-0.702540850817291,"OS01G0601200",null,222.197354434902,283.065822437875,141.47723467831,169.001442312519,"no","OS01G0601200","Os01g0601200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JLG9]","Similar to Protein kinase family protein. (Os01t0601200-01)",1,23624289,23626972,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0704600-01",0.009835709936186631,0.137419156208429,0.32202262289022404,"OS02G0704600",null,771.575217005599,841.992155469753,955.215260345281,1061.8761144145,"no","OS02G0704600","Os02g0704600 protein [Source:UniProtKB/TrEMBL;Acc:Q6YVI2]","Conserved hypothetical protein. (Os02t0704600-01)",2,29072649,29076395,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0770800-01",0.00986160217434806,0.137419156208429,-0.7105994669829171,"OS02G0770800",null,1627.87308240369,1277.95766852548,806.156151194432,969.49873554193,"no","OS02G0770800","Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:Q6ZHH7]","Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2). (Os02t0770800-01)",2,32513749,32517155,"GO:0042128;GO:0006809;GO:0050464;GO:0043546;GO:0009703;GO:0005829;GO:0030151;GO:0055114;GO:0046872;GO:0016491;GO:0020037","nitrate assimilation;nitric oxide biosynthetic process;nitrate reductase (NADPH) activity;molybdopterin cofactor binding;nitrate reductase (NADH) activity;cytosol;molybdenum ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;heme binding","The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899];The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. [GOC:ai];Catalysis of the reaction: nitrite + NADP+ + H2O = nitrate + NADPH + H+. [EC:1.7.1.3, MetaCyc:NITRATE-REDUCTASE-NADPH-RXN];Interacting selectively and non-covalently with the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [ISSN:09498257];Catalysis of the reaction: nitrite + NAD+ + H2O = nitrate + NADH + H+. [EC:1.7.1.1];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with molybdenum (Mo) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS03T0751600-01",0.00986146956017539,0.137419156208429,0.45848212140874606,"OS03G0751600",null,818.458730279719,701.104756449902,994.242890683987,1093.7822356287,"no","OS03G0751600","Heavy metal-associated domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8LLM9]","Similar to Circumsporozoite protein. (Os03t0751600-01);Similar to Circumsporozoite protein. (Os03t0751600-02)",3,30989898,30991596,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS03T0818100-01",0.00984632460104909,0.137419156208429,0.30719711388625304,"OS03G0818100",null,860.166850806637,892.296094881746,1079.0961145039,1089.22894900843,"no","OS03G0818100","Histidine acid phosphatase family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q84TX6]","Histidine acid phosphatase family protein. (Os03t0818100-01);Similar to Multiple inositol polyphosphate phosphatase PhyIIa2. (Os03t0818100-02)",3,34334756,34340133,"GO:0003993;GO:0016311;GO:0016791;GO:0052745;GO:0005774;GO:0005783","acid phosphatase activity;dephosphorylation;phosphatase activity;inositol phosphate phosphatase activity;vacuolar membrane;endoplasmic reticulum","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate. [GOC:ai];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732]"]
["OS05T0115800-01",0.00986583912828512,0.137419156208429,0.39631891005440906,"OS05G0115800",null,447.699213092739,452.125167397789,622.656805733599,561.64293949328,"no","OS05G0115800","Os05g0115800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DL92]","Similar to MAP kinase phosphatase (Fragment). (Os05t0115800-01);Similar to MAP kinase phosphatase. (Os05t0115800-02)",5,858411,861595,"GO:0035335;GO:0016311;GO:0004725;GO:0008138;GO:0016310;GO:0016301;GO:0016791;GO:0006470","peptidyl-tyrosine dephosphorylation;dephosphorylation;protein tyrosine phosphatase activity;protein tyrosine/serine/threonine phosphatase activity;phosphorylation;kinase activity;phosphatase activity;protein dephosphorylation","The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric residues from a protein. [GOC:hb]"]
["OS06T0175500-02",0.009872841315707691,0.137419156208429,-0.403052454992506,"OS06G0175500",null,3872.5880033631,4096.19787203509,2763.03981312749,3263.40631332044,"no","OS06G0175500","Os06g0175500 protein [Source:UniProtKB/TrEMBL;Acc:Q658F5]","Epsin-like, N-terminal domain containing protein. (Os06t0175500-01);Similar to predicted protein. (Os06t0175500-02)",6,3801240,3807766,"GO:0030136;GO:0048268;GO:0030276;GO:0005545;GO:0005543","clathrin-coated vesicle;clathrin coat assembly;clathrin binding;1-phosphatidylinositol binding;phospholipid binding","A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. [GOC:mah, PMID:11252894];The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. [GOC:jid, PMID:11460887, PMID:11977118, PMID:9531549];Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. [GOC:jl, GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [ISBN:0198506732];Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. [ISBN:0198506732]"]
["OS07T0625800-02",0.00983471504273182,0.137419156208429,-0.8013412824442291,"OS07G0625800",null,1072.80395226985,1141.2897243691,525.567286915049,744.913871784795,"no","OS07G0625800","Os07g0625800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIG9]","Plant lipid transfer protein/Par allergen family protein. (Os07t0625800-01);Plant lipid transfer protein/Par allergen family protein. (Os07t0625800-02)",7,25920699,25922871,"GO:0006869;GO:0008289;GO:0016020;GO:0016021","lipid transport;lipid binding;membrane;integral component of membrane","The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [ISBN:0198506732];Interacting selectively and non-covalently with a lipid. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0517700-02",0.00987283895699001,0.137419156208429,-0.47228726927336406,"OS08G0517700",null,643.351783863867,774.390284106055,531.057151488486,490.880950096474,"no","OS08G0517700","Os08g0517700 protein [Source:UniProtKB/TrEMBL;Acc:Q84Z91]","Oxysterol-binding protein family protein. (Os08t0517700-01);Similar to Oxysterol-binding protein OBPa. (Os08t0517700-02)",8,25695174,25699582]
["OS09T0526600-03",0.009863730011778041,0.137419156208429,0.41944685723717,"OS09G0526600","HSFB2C",274.930580122856,287.08678405898,360.665255847215,390.985016965645,"no","OS09G0526600","Heat stress transcription factor B-2c [Source:UniProtKB/Swiss-Prot;Acc:Q652B0]","Similar to Isoform 2 of Heat stress transcription factor B-2c. (Os09t0526600-01);Similar to Heat shock factor protein 3 (HSF 3) (Heat shock transcription factor 3) (HSTF 3). (Os09t0526600-02);Similar to Isoform 2 of Heat stress transcription factor B-2c. (Os09t0526600-03)",9,20591252,20595143,"GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0437700-01",0.00988593444921011,0.13747613531737202,-0.279417240165138,"OS05G0437700",null,1006.00361847361,1058.15151078595,850.814818203355,849.891646311514,"no","OS05G0437700","Os05g0437700 protein [Source:UniProtKB/TrEMBL;Acc:Q75HX9]","Similar to G-box-binding factor 4. (Os05t0437700-01)",5,21432457,21435612,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS08T0151000-00",0.00988419806065869,0.13747613531737202,0.27119352848009404,"OS08G0151000",null,1492.18773803989,1513.11548721337,1913.3576358908,1713.45970991999,"no","OS08G0151000","Os08g0151000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBW5]","Similar to Myb-like DNA-binding domain, SHAQKYF class family protein. (Os08t0151000-00)",8,2934798,2940214,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS11T0104400-01",9.911160958999651E-3,0.137764235495613,-0.251766249236656,"OS11G0104400",null,2428.08765082317,2593.92699124894,2153.34037573054,2064.48680977751,"no","OS11G0104400","Os11g0104400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XY37]","Similar to W-3 fatty acid desaturase. (Os11t0104400-01)",11,199761,203743,"GO:0016717;GO:0006629;GO:0055114;GO:0016020;GO:0016021","oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;lipid metabolic process;oxidation-reduction process;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water. [GOC:mah];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0159800-01",0.00993549722604449,0.138039704979587,0.8923351455802141,"OS10G0159800",null,255.983696398238,204.837302254801,361.95263002859,493.413216941441,"no","OS10G0159800","Alcohol dehydrogenase 2, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10A46]","Alcohol dehydrogenase superfamily, zinc-containing protein. (Os10t0159800-01);Similar to Alcohol dehydrogenase 2. (Os10t0159800-03);Similar to Alcohol dehydrogenase 2. (Os10t0159800-04)",10,3793940,3803819,"GO:0046872;GO:0016491;GO:0055114;GO:0008270","metal ion binding;oxidoreductase activity;oxidation-reduction process;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS10T0502100-01",9.941442388328699E-3,0.13805952174919,-0.693048624242381,"OS10G0502100",null,182.446451577282,205.866052682091,103.424737075178,136.764172969669,"no","OS10G0502100","Os10g0502100 protein [Source:UniProtKB/TrEMBL;Acc:Q8LNF1]","Conserved hypothetical protein. (Os10t0502100-01)",10,19152303,19152916]
["OS09T0489500-02",0.009947217697631511,0.13807696278875,-0.883013578814097,"OS09G0489500",null,847.988899794329,674.40963233222,349.442544560683,476.053093415009,"no","OS09G0489500","Os09g0489500 protein [Source:UniProtKB/TrEMBL;Acc:B7EU89]","Similar to Transcription factor HBP-1b(C38) (Fragment). (Os09t0489500-01);Similar to DNA binding protein. (Os09t0489500-02)",9,18868479,18877573,"GO:0003700;GO:0043565;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0136600-01",9.97530287466835E-3,0.13812658165052402,-0.43951172741832506,"OS01G0136600",null,354.700363960302,341.737647452271,247.82908695373,265.713250341071,"no","OS01G0136600","Os01g0136600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXY5]","Conserved hypothetical protein. (Os01t0136600-01)",1,1970071,1970782]
["OS01T0259200-02",0.00997024374207968,0.13812658165052402,0.264056266292923,"OS01G0259200",null,1275.70706050022,1287.681570444,1603.70574085042,1474.54016494451,"no","OS01G0259200","Os01g0259200 protein [Source:UniProtKB/TrEMBL;Acc:Q5NAV8]","Similar to serine/threonine protein kinase PBS1. (Os01t0259200-01);Similar to Protein kinase. (Os01t0259200-02)",1,8683011,8687579,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0290000-04",0.009965206938607321,0.13812658165052402,-0.22933886250134702,"OS01G0290000",null,3294.45213831584,3166.24431895382,2766.4285928804,2744.7116190459,"no","OS01G0290000","Os01g0290000 protein [Source:UniProtKB/TrEMBL;Acc:Q9LGZ3]","Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment). (Os01t0290000-01);Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment). (Os01t0290000-02);Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment). (Os01t0290000-03);Similar to retrotransposon protein SINE subclass. (Os01t0290000-04)",1,10492039,10495682,"GO:0004190;GO:0006629;GO:0006508;GO:0030163;GO:0016787;GO:0008233","aspartic-type endopeptidase activity;lipid metabolic process;proteolysis;protein catabolic process;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0181800-02",0.00998498292720109,0.13812658165052402,-0.762851011432721,"OS03G0181800",null,892.886886673219,1132.17709656013,528.845199087448,664.586895271347,"no","OS03G0181800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8H7K9]","Protein of unknown function DUF936, plant family protein. (Os03t0181800-01);Hypothetical conserved gene. (Os03t0181800-02)",3,4287354,4291799]
["OS04T0105100-01",9.983700767382411E-3,0.13812658165052402,0.43284681063495706,"OS04G0105100",null,310.872445424977,333.503005344988,468.338432038544,401.500536360956,"no","OS04G0105100","OSJNBa0094O15.15 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXI7]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0105100-01)",4,333801,337060,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0461400-01",0.009994805809209951,0.13812658165052402,-0.5671400482058561,"OS04G0461400",null,1690.29047402663,2054.05514334351,1356.19227614277,1171.06678719358,"no","OS04G0461400","Os04g0461400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCM7]","Conserved hypothetical protein. (Os04t0461400-01);Hypothetical gene. (Os04t0461400-02)",4,23045683,23056619]
["OS04T0608500-01",0.009962045861110961,0.13812658165052402,0.218692017586774,"OS04G0608500",null,3715.04922202638,3682.16362550659,4336.25939010592,4271.71512180875,"no","OS04G0608500","Os04g0608500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WEK5]","Similar to 26S proteasome subunit RPN2a. (Os04t0608500-01)",4,30798891,30802515]
["OS04T0661200-01",0.0100030017243828,0.13812658165052402,0.36101101011445,"OS04G0661200","IPK1",594.198594128793,601.660335566036,720.794565530563,815.077684361368,"no","OS04G0661200","Inositol-pentakisphosphate 2-kinase IPK1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XQZ6]","Inositol-pentakisphosphate 2-kinase, metazoa domain containing protein. (Os04t0661200-01)",4,33735145,33739378,"GO:0005634;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0000166;GO:0016740;GO:0032958;GO:0035299;GO:0052746","nucleus;phosphorylation;kinase activity;metal ion binding;ATP binding;nucleotide binding;transferase activity;inositol phosphate biosynthetic process;inositol pentakisphosphate 2-kinase activity;inositol phosphorylation","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [CHEBI:24848, CHEBI:25448, GOC:mah];Catalysis of the reaction: 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ATP = 1D-myo-inositol hexakisphosphate + ADP + 2 H(+). [EC:2.7.1.158, RHEA:20316];The process of introducing one or more phosphate groups into inositol. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms. [CHEBI:24848, ISBN:0198506732]"]
["OS07T0154300-01",0.00998934536839908,0.13812658165052402,-0.501984413497195,"OS07G0154300",null,319.026476780386,321.151042184062,203.922358950116,248.129285244971,"no","OS07G0154300","Os07g0154300 protein [Source:UniProtKB/TrEMBL;Acc:Q69NX3]","Conserved hypothetical protein. (Os07t0154300-01)",7,2882267,2882849,"GO:0005773;GO:0005774","vacuole;vacuolar membrane","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai]"]
["OS07T0569700-01",0.00997597013628261,0.13812658165052402,-0.37075515698201905,"OS07G0569700",null,503.51143619652,545.545039607542,393.209141899028,418.107614507273,"no","OS07G0569700","C2H2 transcription factor [Source:UniProtKB/TrEMBL;Acc:F1DK73]","Zinc finger AN1 and C2H2 domain-containing stress-associated protein, Stress response, Regulation of the expression of stress-associated genes (Os07t0569700-01)",7,22932677,22933189,"GO:0046872;GO:0003676;GO:0008270","metal ion binding;nucleic acid binding;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS10T0333700-00",0.00999640815546964,0.13812658165052402,-1.6075480149616,"OS10G0333700",null,701.246696565194,1143.58592264902,229.290690685537,376.101475666589,"no","OS10G0333700","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSY5]","Plant disease resistance response protein domain containing protein. (Os10t0333700-00)",10,9541494,9542351,"GO:0016853;GO:0048046;GO:0005576;GO:0016020;GO:0016021","isomerase activity;apoplast;extracellular region;membrane;integral component of membrane","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0676500-00",0.0100050446842305,0.13812658165052402,-0.477916558747763,"OS11G0676500",null,375.085442348825,346.884298769324,282.95446935662,235.429754897787,"no","OS11G0676500","Os11g0676500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5H8]","Hypothetical conserved gene. (Os11t0676500-00)",11,27321474,27322040,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS03T0154000-01",0.0100352052820704,0.13835541145208202,1.24445219523184,"OS03G0154000",null,92.75210666778,53.5251736973437,183.43255254843,163.140120613819,"no","OS03G0154000","FAD binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10RL8]","Aromatic-ring hydroxylase family protein. (Os03t0154000-01)",3,2961746,2964295,"GO:0004497;GO:0044550;GO:0071949;GO:0016491;GO:0055114","monooxygenase activity;secondary metabolite biosynthetic process;FAD binding;oxidoreductase activity;oxidation-reduction process","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:mah];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS03T0669000-01",0.010028905010035,0.13835541145208202,0.26926939821608603,"OS03G0669000",null,830.919178282943,842.564538806395,1012.33885945231,1004.53927099904,"no","OS03G0669000","DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y183]","DEAD-box RNA helicase, Regulation of thermotolerant growth, rRNA homeostasis at high temperature (Os03t0669000-01);Similar to cDNA clone:J013120J20, full insert sequence. (Os03t0669000-02)",3,26380709,26385454,"GO:0003676;GO:0005524;GO:0006364;GO:0005730;GO:0010501;GO:0004004;GO:0005737;GO:0003723;GO:0004386;GO:0016787;GO:0000166","nucleic acid binding;ATP binding;rRNA processing;nucleolus;RNA secondary structure unwinding;ATP-dependent RNA helicase activity;cytoplasm;RNA binding;helicase activity;hydrolase activity;nucleotide binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The process in which a secondary structure of RNA are broken or 'melted'. [PMID:17169986];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS05T0529700-01",0.0100333414311772,0.13835541145208202,2.38524528709415,"OS05G0529700",null,79.8558602014694,50.8860992578494,322.715271944986,360.323517850347,"no","OS05G0529700","Os05g0529700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQ21]","Similar to electron transporter/ heat shock protein binding protein. (Os05t0529700-01);Similar to electron transporter/ heat shock protein binding protein. (Os05t0529700-02);Heat shock protein DnaJ family protein. (Os05t0529700-03)",5,26310862,26314173,"GO:0009055;GO:0005506","electron carrier activity;iron ion binding","Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai]"]
["OS07T0683200-01",0.0100449073359716,0.138426706778802,0.8905363670707931,"OS07G0683200",null,223.843418146976,151.219041001608,358.884172595375,336.43107880149,"no","OS07G0683200","Os07g0683200 protein [Source:UniProtKB/TrEMBL;Acc:C7J5E1]","Similar to NAC domain transcription factor. (Os07t0683200-01)",7,28985802,28987953,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0218700-01",0.0100500159169261,0.138434664695188,0.652290863527994,"OS01G0218700",null,129.002930028503,124.218799335345,213.955552561005,184.023383144094,"no","OS01G0218700","ABC transporter D family member 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G54350) UniProtKB/Swiss-Prot;Acc:Q6NLC1]","ABC transporter integral membrane type 1 domain containing protein. (Os01t0218700-01);Similar to peroxisomal membrane ABC transporter family, PMP family. (Os01t0218700-02)",1,6500709,6507086,"GO:0016887;GO:0005524;GO:0034968;GO:0018024;GO:0042626;GO:0032259;GO:0008168;GO:0046872;GO:0055085;GO:0006810;GO:0016021;GO:0000166;GO:0016020;GO:0016740;GO:0009507","ATPase activity;ATP binding;histone lysine methylation;histone-lysine N-methyltransferase activity;ATPase activity, coupled to transmembrane movement of substances;methylation;methyltransferase activity;metal ion binding;transmembrane transport;transport;integral component of membrane;nucleotide binding;membrane;transferase activity;chloroplast","Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The modification of a histone by addition of one or more methyl groups to a lysine residue. [GOC:mah, GOC:pr];Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. [EC:2.1.1.43, RESID:AA0074, RESID:AA0075, RESID:AA0076];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS07T0172900-02",0.010065184701017799,0.138581127979042,-0.454714171423975,"OS07G0172900",null,359.958042210386,356.150054542031,246.052304077183,276.459347259901,"no","OS07G0172900","Os07g0172900 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZA55]","Similar to biopterin transport-related protein BT1. (Os07t0172900-01);Hypothetical conserved gene. (Os07t0172900-02)",7,3830318,3840267,"GO:0006810;GO:0016021;GO:0016020","transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0482000-01",0.0100839850835186,0.138659444171248,0.436730462481612,"OS04G0482000","MSRA2-1",1527.59826044449,1311.00841874102,1812.60340498939,2029.545476369,"no","OS04G0482000","Peptide methionine sulfoxide reductase A2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XUP7]","Similar to Peptide methionine sulfoxide reductase. (Os04t0482000-01)",4,24103028,24104868,"GO:0005829;GO:0005737;GO:0055114;GO:0016491;GO:0008113","cytosol;cytoplasm;oxidation-reduction process;oxidoreductase activity;peptide-methionine (S)-S-oxide reductase activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin, and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the S enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin. [EC:1.8.4.11, GOC:mah, GOC:vw, PMID:11169920]"]
["OS06T0527500-02",0.0100844882478565,0.138659444171248,1.37807645014898,"OS06G0527500",null,227.27148844821,242.684277183299,566.168721697338,655.347756346609,"no","OS06G0527500","Os06g0527500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXC9]","Conserved hypothetical protein. (Os06t0527500-01);Conserved hypothetical protein. (Os06t0527500-02)",6,19569640,19571368]
["OS07T0599700-01",0.0100822249427244,0.138659444171248,-1.49456776439252,"OS07G0599700",null,1223.46046671331,1970.34934102369,445.477275093204,687.964779915623,"no","OS07G0599700","Os07g0599700 protein [Source:UniProtKB/TrEMBL;Acc:Q8H5A1]","Similar to Surface protein PspC. (Os07t0599700-01)",7,24477380,24478153,"GO:0007275","multicellular organism development","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS03T0839100-01",0.0100957211790159,0.138751450050065,0.28653793131042604,"OS03G0839100",null,848.01926096256,880.07737521594,1091.81396968986,1015.96242777468,"no","OS03G0839100","Os03g0839100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DLY4]","Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 domain containing protein. (Os03t0839100-01)",3,35259526,35264535,"GO:0016709;GO:0031314;GO:0006744;GO:0071949;GO:0004497;GO:0005743;GO:0005739;GO:0050660;GO:0055114;GO:0016491;GO:0016020;GO:0016712","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;extrinsic component of mitochondrial inner membrane;ubiquinone biosynthetic process;FAD binding;monooxygenase activity;mitochondrial inner membrane;mitochondrion;flavin adenine dinucleotide binding;oxidation-reduction process;oxidoreductase activity;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];The component of mitochondrial inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. [GOC:dos, GOC:mah];The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme. [GOC:mah];Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:mah];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah]"]
["OS02T0710900-01",0.0101095169231944,0.13885845384179102,-0.25100672442403504,"OS02G0710900",null,3416.53913791647,3555.30672981972,2789.13185821725,3069.37879621928,"no","OS02G0710900","Heat shock 70 kDa protein 17 [Source:Projected from Arabidopsis thaliana (AT4G16660) UniProtKB/Swiss-Prot;Acc:F4JMJ1]","Heat shock protein Hsp70 family protein. (Os02t0710900-01)",2,29451939,29457739,"GO:0005524;GO:0000166","ATP binding;nucleotide binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS03T0729600-01",0.010115833298626099,0.13885845384179102,-0.7538293509121331,"OS03G0729600",null,273.160050406209,370.558894827764,181.481142414936,200.261824705587,"no","OS03G0729600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q851F3]","Conserved hypothetical protein. (Os03t0729600-01)",3,29827496,29828494]
["OS06T0116500-01",0.010117141864749499,0.13885845384179102,-0.39748518342397804,"OS06G0116500",null,562.628163523237,647.448735685177,481.998302973002,436.668466553157,"no","OS06G0116500","Os06g0116500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DF38]","Pleckstrin homology-type domain containing protein. (Os06t0116500-01)",6,913426,921695,"GO:0008289","lipid binding","Interacting selectively and non-covalently with a lipid. [GOC:ai]"]
["OS11T0114700-04",0.0101296768237514,0.13896806749854201,0.32874281521160903,"OS11G0114700",null,701.547891507691,647.835794833229,822.637135669103,872.078762469436,"no","OS11G0114700","Nucleotidyltransferase family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RBE2]","PAP/25A core domain containing protein. (Os11t0114700-01);PAP/25A core domain containing protein. (Os11t0114700-02);Similar to cDNA, clone: J090093C10, full insert sequence. (Os11t0114700-03);PAP/25A-associated domain containing protein. (Os11t0114700-04)",11,663975,671701,"GO:0016779;GO:0016740","nucleotidyltransferase activity;transferase activity","Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0425300-02",0.0101547374451904,0.139186872330847,0.96615392160756,"OS03G0425300",null,65.1138684434671,56.3221367027561,141.051829077282,96.1886447354058,"no","OS03G0425300","Os03g0425300 protein [Source:UniProtKB/TrEMBL;Acc:Q75GS0]","Similar to DGK1 (DIACYLGLYCEROL KINASE1); calcium ion binding / diacylglycerol kinase. (Os03t0425300-01);Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1). (Os03t0425300-02)",3,17754818,17761133,"GO:0007205;GO:0004143;GO:0016301;GO:0003951;GO:0016310;GO:0005524;GO:0000166;GO:0008152;GO:0016740;GO:0005622;GO:0035556;GO:0046872;GO:0016020;GO:0016021","protein kinase C-activating G-protein coupled receptor signaling pathway;diacylglycerol kinase activity;kinase activity;NAD+ kinase activity;phosphorylation;ATP binding;nucleotide binding;metabolic process;transferase activity;intracellular;intracellular signal transduction;metal ion binding;membrane;integral component of membrane","The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG). [GOC:mah, GOC:signaling];Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol-3-phosphate. [EC:2.7.1.107, GOC:elh];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+). [EC:2.7.1.23, RHEA:18632];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0153200-02",0.010153043238836099,0.139186872330847,-0.564471766282407,"OS06G0153200",null,638.052953560772,810.082917304029,481.998302973002,497.235457439725,"no","OS06G0153200","Os06g0153200 protein [Source:UniProtKB/TrEMBL;Acc:B7EL20]","Similar to cDNA clone:J023129O11, full insert sequence. (Os06t0153200-01);Similar to phosphate translocator-related. (Os06t0153200-02)",6,2743656,2749183,"GO:0005793;GO:0016020;GO:0016021;GO:0015786;","endoplasmic reticulum-Golgi intermediate compartment;membrane;integral component of membrane;UDP-glucose transport;","A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi  and Golgi-to-ER transport. [GOC:pr, PMID:16723730];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of UDP-glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-glucose is a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai];"]
["OS08T0337100-01",0.0101728611929619,0.139310289183045,0.554301388850378,"OS08G0337100",null,180.407943738429,162.634181618852,273.197418689151,230.54532014887,"no","OS08G0337100","Os08g0337100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XEG3]","Conserved hypothetical protein. (Os08t0337100-01)",8,15106952,15109324,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS11T0526200-01",0.0101684538699732,0.139310289183045,0.31581896577731,"OS11G0526200",null,627.860414366511,710.237881753215,837.154947268898,828.40013341628,"no","OS11G0526200","Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G26710) UniProtKB/Swiss-Prot;Acc:Q9LSE4]","Similar to predicted protein. (Os11t0526200-01)",11,19092888,19095132,"GO:0016020;GO:0016021;GO:0010190;GO:0009507","membrane;integral component of membrane;cytochrome b6f complex assembly;chloroplast","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Formation of cytochrome b6f complex, a complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen, by the aggregation, arrangement and bonding together of its constituents. [GOC:tb];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS11T0591200-01",0.010190833828582001,0.139369004087215,-0.8987374014996651,"OS11G0591200",null,292.584788838907,293.461608380992,125.865953610359,188.463504867855,"no","OS11G0591200","NA","Similar to 3-ketoacyl-CoA synthase. (Os11t0591200-01)","NA","NA","NA","NA","NA","NA"]
["OS06T0271300-00",0.0101902403001561,0.139369004087215,-0.985241564472462,"OS06G0271300",null,128.512270234054,124.439665574183,77.8192025133627,49.957225558892,"no","OS06G0271300","Os06g0271300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WV09]","Similar to OSIGBa0140C02.5 protein. (Os06t0271300-00)",6,9116877,9124244]
["OS08T0162700-01",0.0101880319360269,0.139369004087215,-1.08836822731287,"OS08G0162700",null,73.1697261207456,78.7740689164333,27.3417436449369,44.1163599893402,"no","OS08G0162700","Os08g0162700 protein [Source:UniProtKB/TrEMBL;Acc:Q84SC4]","Aldehyde dehydrogenase, conserved site domain containing protein. (Os08t0162700-01)",8,3697393,3698162,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0203000-01",0.0102009689375676,0.139445191490185,1.08614723329816,"OS06G0203000",null,49.0916556713974,80.2881540600763,136.348084143318,138.333412503667,"no","OS06G0203000","Os06g0203000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WU94]","Hypothetical protein. (Os06t0203000-01)",6,5196835,5197767]
["OS01T0141000-01",0.0102248882636133,0.139709653948977,-0.68847271247436,"OS01G0141000",null,291.828192277491,342.024614684467,171.433078089357,221.879178440938,"no","OS01G0141000","AP2/ERF and B3 domain-containing protein Os01g0141000 [Source:UniProtKB/Swiss-Prot;Acc:Q9AWS0]","AP2/ERF and B3 domain-containing protein, Salt stress response (Os01t0141000-01)",1,2202278,2203787,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS07T0142600-01",0.0102424209967897,0.13988665457931101,-2.17938636189147,"OS07G0142600",null,50.9626959713077,90.5810631801201,9.75705066746967,21.4915128952337,"no","OS07G0142600","Os07g0142600 protein [Source:UniProtKB/TrEMBL;Acc:Q0D8N7]","Similar to Vegetative cell wall protein gp1. (Os07t0142600-01)",7,2184250,2184996,"GO:0007275","multicellular organism development","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS08T0555300-01",0.0102520364066531,0.13995541389457802,-0.66713208437913,"OS08G0555300",null,139.663771967165,144.23199673506,83.9583238979914,94.8271175643442,"no","OS08G0555300","Transmembrane 9 superfamily member [Source:UniProtKB/TrEMBL;Acc:A0A0P0XK31]","Nonaspanin (TM9SF) domain containing protein. (Os08t0555300-01)",8,27794265,27797275,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0114800-02",0.0102765853303236,0.140165283487521,-0.394732844865866,"OS03G0114800",null,1453.28592930586,1672.1446122519,1130.37949732134,1246.91740881897,"no","OS03G0114800","DUF791 domain protein [Source:UniProtKB/TrEMBL;Acc:Q8GZW6]","Protein of unknown function DUF791 family protein. (Os03t0114800-01);Similar to Major Facilitator superfamily protein. (Os03t0114800-02)",3,842577,846408,"GO:0015689;GO:0015098;GO:0016021;GO:0016020","molybdate ion transport;molybdate ion transmembrane transporter activity;integral component of membrane;membrane","The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid. [GOC:ai];Enables the transfer of molybdate (MoO4 2-) ions from one side of a membrane to the other. Molybdate is the bivalent anion derived from molybdic acid. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0171500-02",0.0102747271462009,0.140165283487521,0.320229809772036,"OS10G0171500",null,706.927936058638,805.861323992967,963.477650135595,925.284237925967,"no","OS10G0171500","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8S5I8]","Similar to Cytochrome P450 CYP76H18. (Os10t0171500-01);Similar to Cytochrome P450 family protein, expressed. (Os10t0171500-02)",10,4929261,4931157,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS04T0423800-01",0.0102972384953719,0.140384306341189,-0.73120304266817,"OS04G0423800",null,2035.03014637969,1775.91754963398,980.285159198912,1315.43495576137,"no","OS04G0423800","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q7X766]","Peroxidase (EC 1.11.1.7). (Os04t0423800-01)",4,20954485,20955826,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS05T0168500-02",0.010313656015935,0.14048275461384202,-0.420132539729671,"OS05G0168500",null,4560.45915213209,5326.8504687668,3519.47818769351,3869.86160478618,"no","OS05G0168500","Transmembrane 9 superfamily member [Source:UniProtKB/TrEMBL;Acc:Q60DU0]","Nonaspanin (TM9SF) family protein. (Os05t0168500-01);Similar to predicted protein. (Os05t0168500-02)",5,4107120,4109864,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0148400-01",0.0103119516893423,0.14048275461384202,0.8109039317735741,"OS12G0148400",null,56.657404466595096,52.056334288607,100.089725266105,90.6279036736279,"no","OS12G0148400","Os12g0148400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y714]","Similar to HEAT repeat family protein, expressed. (Os12t0148400-01)",12,2372976,2382829,"GO:0032947;GO:0015074;GO:0019898;GO:0009654;GO:0009523;GO:0015979;GO:0043248;GO:0005509;GO:0003676;GO:0008270","protein complex scaffold;DNA integration;extrinsic component of membrane;photosystem II oxygen evolving complex;photosystem II;photosynthesis;proteasome assembly;calcium ion binding;nucleic acid binding;zinc ion binding","A structural molecule activity that provides a physical support for the assembly of a multiprotein complex. The scaffold may or may not be part of the final complex. [GOC:mah, GOC:vw];The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. [GOC:dos, GOC:jl, GOC:mah];A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). [GOC:cjm, InterPro:IPR002683];A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. [GOC:ds, GOC:mah, ISBN:0943088399, PMID:9821949];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];The aggregation, arrangement and bonding together of a mature, active proteasome complex. [GOC:go_curators, PMID:10872471];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0774200-02",0.0103201969903117,0.14050920608199702,-0.29146199597907,"OS03G0774200",null,2546.57707087721,2871.83143491517,2171.40401175103,2255.83471717141,"no","OS03G0774200","NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XZW1]","Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3). (Os03t0774200-01);Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3). (Os03t0774200-02)",3,32092409,32095619,"GO:0051539;GO:0016651;GO:0055114;GO:0016020;GO:0008137;GO:0005886;GO:0016491;GO:0016021","4 iron, 4 sulfur cluster binding;oxidoreductase activity, acting on NAD(P)H;oxidation-reduction process;membrane;NADH dehydrogenase (ubiquinone) activity;plasma membrane;oxidoreductase activity;integral component of membrane","Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol. [EC:1.6.5.3];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0226933-01",0.0103316849762583,0.140602957414095,-0.28664183704582,"OS11G0226933",null,1531.0069580095,1513.95392343119,1169.73296005622,1326.55065800542,"no","OS11G0226933","Os11g0226933 protein [Source:UniProtKB/TrEMBL;Acc:C7J895]","NB-ARC domain containing protein. (Os11t0226933-01)",11,6638306,6640336,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS06T0715500-03",0.010343749421465499,0.14070446675183101,-0.342828130443023,"OS06G0715500",null,6104.41403383426,6819.76584569313,5350.58816078249,4840.05145351781,"no","OS06G0715500","Os06g0715500 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9P6]","Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha). (Os06t0715500-01);Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha). (Os06t0715500-02);Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha). (Os06t0715500-03)",6,30371037,30374533,"GO:0006613;GO:0005783;GO:0005789;GO:0016020;GO:0016021","cotranslational protein targeting to membrane;endoplasmic reticulum;endoplasmic reticulum membrane;membrane;integral component of membrane","The targeting of proteins to a membrane that occurs during translation. The transport of most secretory proteins, particularly those with more than 100 amino acids, into the endoplasmic reticulum lumen occurs in this manner, as does the import of some proteins into mitochondria. [ISBN:0716731363, PMID:10512867, PMID:16896215];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0652550-00",0.0103666994051163,0.140953894181181,-0.6392528734114911,"OS02G0652550",null,274.69008474625,354.517380038346,212.297359938357,191.682371975848,"no","OS02G0652550","Os02g0652550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VMG3]","Similar to predicted protein. (Os02t0652550-00)",2,26308559,26316112,"GO:0005789;GO:0005840;GO:0005622;GO:0006412;GO:0003735;GO:0016020;GO:0016021","endoplasmic reticulum membrane;ribosome;intracellular;translation;structural constituent of ribosome;membrane;integral component of membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0500200-01",0.0103895515530201,0.14120177003908901,-0.28671749078006203,"OS05G0500200",null,1072.21868894081,1057.08434210649,918.12332704948,827.405024969922,"no","OS05G0500200","Os05g0500200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WP76]","Similar to UDP glucosyltransferase-1. (Os05t0500200-01)",5,24616132,24619054,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0176900-00",0.0103977451125699,0.14125029287649402,"-Inf","OS06G0176900",null,48.1257012314651,12.2702633133424,0,0,"no","OS06G0176900","Os06g0176900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT28]","Similar to Cystathionine gamma-synthase. (Os06t0176900-00)",6,3861480,3865179,"GO:0071266;GO:0004121;GO:0030170;GO:0003824","'de novo' L-methionine biosynthetic process;cystathionine beta-lyase activity;pyridoxal phosphate binding;catalytic activity","The chemical reactions and pathways resulting in the formation of L-methionine, the L-enantiomer of (2S)-2-amino-4-(methylsulfanyl)butanoic acid, from simpler components. [CHEBI:16643, GOC:ecd];Catalysis of the reaction: cystathionine + H2O = L-homocysteine + NH3 + pyruvate. [EC:4.4.1.8];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0142500-00",0.0104024393482585,0.14125125643021902,-2.07891593874117,"OS07G0142500",null,200.233902325406,324.88839782272,38.2973424669906,85.9950093468345,"no","OS07G0142500","Early nodulin 75-like protein [Source:UniProtKB/TrEMBL;Acc:Q8H4K2]","Conserved hypothetical protein. (Os07t0142500-00)",7,2181829,2182635,"GO:0007275","multicellular organism development","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS01T0111300-01",0.0104283565450523,0.14133043267450102,-0.280004809587093,"OS01G0111300",null,1265.82271864012,1374.12016346632,1045.9215684608,1128.30442699977,"no","OS01G0111300","Os01g0111300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXK8]","Conserved hypothetical protein. (Os01t0111300-01)",1,597009,597804]
["OS01T0757400-01",0.0104250967507645,0.14133043267450102,-0.29767025489638105,"OS01G0757400",null,3206.27971698667,3588.7380194769,2675.91612585905,2852.27334095908,"no","OS01G0757400","Katanin [Source:UniProtKB/TrEMBL;Acc:Q7XXR9]","Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-01);Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-02)",1,31806962,31811863,"GO:0016887;GO:0005634;GO:0005524","ATPase activity;nucleus;ATP binding","Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS01T0854000-01",0.0104401744607741,0.14133043267450102,-0.581892800757668,"OS01G0854000",null,209.966307401788,190.426098730934,140.501529611563,126.995303471835,"no","OS01G0854000","Os01g0854000 protein [Source:UniProtKB/TrEMBL;Acc:Q5N7V3]","Similar to AER. (Os01t0854000-01)",1,36794890,36796983,"GO:0016747;GO:0016740","transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0664300-01",0.010432434409181,0.14133043267450102,0.6203794092446181,"OS02G0664300","TPP2",203.910308690966,230.856879652642,363.719015351355,304.639632208702,"no","OS02G0664300","Tripeptidyl-peptidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6ESI7]","Peptidase S8 and S53, subtilisin, kexin, sedolisin domain containing protein. (Os02t0664300-01);Similar to predicted protein. (Os02t0664300-02);Similar to predicted protein. (Os02t0664300-03)",2,26952898,26970251,"GO:0004252;GO:0006508;GO:0008240;GO:0004177;GO:0008236;GO:0016787;GO:0008233;GO:0005737;GO:0005773;GO:0005774;GO:0009507;GO:0016020;GO:0022626","serine-type endopeptidase activity;proteolysis;tripeptidyl-peptidase activity;aminopeptidase activity;serine-type peptidase activity;hydrolase activity;peptidase activity;cytoplasm;vacuole;vacuolar membrane;chloroplast;membrane;cytosolic ribosome","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the release of an N-terminal tripeptide from a polypeptide. [GOC:mah];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A ribosome located in the cytosol. [GOC:mtg_sensu]"]
["OS03T0268200-05",0.0104387284325344,0.14133043267450102,-0.288801226616682,"OS03G0268200",null,957.17932488157,942.769241034009,782.249358383762,773.014257657289,"no","OS03G0268200","Os03g0268200 protein [Source:UniProtKB/TrEMBL;Acc:Q10NJ0]","Serine/threonine protein kinase domain containing protein. (Os03t0268200-01);Similar to Protein kinase domain containing protein, expressed. (Os03t0268200-02);Similar to Protein kinase domain containing protein, expressed. (Os03t0268200-03);Similar to Protein kinase domain containing protein, expressed. (Os03t0268200-04);Similar to Protein kinase domain containing protein, expressed. (Os03t0268200-05)",3,8896186,8901979,"GO:0016310;GO:0016301;GO:0004674;GO:0006468;GO:0005524;GO:0004672;GO:0000166","phosphorylation;kinase activity;protein serine/threonine kinase activity;protein phosphorylation;ATP binding;protein kinase activity;nucleotide binding","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS05T0338900-00",0.0104324691131186,0.14133043267450102,-0.577258353966152,"OS05G0338900",null,215.062576998919,258.361896116024,150.258580279033,167.047668412953,"no","OS05G0338900","Os05g0338900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WL01]","Oligopeptide transporter domain containing protein. (Os05t0338900-00)",5,15867456,15873587,"GO:0006810;GO:0005215;GO:0016020;GO:0016021","transport;transporter activity;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0163800-01",0.0104406515627896,0.14133043267450102,-0.258057725576161,"OS12G0163800",null,2539.99960640096,2827.63173048499,2269.37738747845,2219.10539585422,"no","OS12G0163800","Os12g0163800 protein [Source:UniProtKB/TrEMBL;Acc:Q2QXA8]","Similar to ATP binding protein. (Os12t0163800-01)",12,3236058,3243704,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS05T0269500-01",0.0104457917280594,0.141337390998968,1.8677166444536502,"OS05G0269500","HAP2A",11.2117931136877,6.17598158046274,33.1739722693969,30.2834954432838,"no","OS05G0269500","Protein HAPLESS 2-A [Source:UniProtKB/Swiss-Prot;Acc:Q5W6B9]","Generative cell specific-1, HAP2-GCS1 domain containing protein. (Os05t0269500-01)",5,10847834,10854702,"GO:0008289;GO:0005789;GO:0005783;GO:0005886;GO:0016020;GO:0016021;GO:0007338","lipid binding;endoplasmic reticulum membrane;endoplasmic reticulum;plasma membrane;membrane;integral component of membrane;single fertilization","Interacting selectively and non-covalently with a lipid. [GOC:ai];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The union of male and female gametes to form a zygote. [GOC:ems, GOC:mtg_sensu]"]
["OS09T0511600-04",0.0104569419309304,0.141363048616719,0.547328743905054,"OS09G0511600",null,2270.5116231464,1778.95441485634,2976.23234471544,2941.56556884231,"no","OS09G0511600","Os09g0511600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPM4]","Glycoside hydrolase, family 1 protein. (Os09t0511600-01);Non-protein coding transcript. (Os09t0511600-02);Glycoside hydrolase, family 1 protein. (Os09t0511600-03);Glycoside hydrolase, family 1 protein. (Os09t0511600-04)",9,19882650,19888124,"GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;","glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];"]
["OS11T0502700-01",0.0104536001156095,0.141363048616719,0.754784643674507,"OS11G0502700",null,69.3092665209785,87.4930723898888,124.890248543612,139.694833819019,"no","OS11G0502700","Os11g0502700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y3D1]","Glycosyl transferase, family 31 domain containing protein. (Os11t0502700-01)",11,17911046,17912013]
["OS02T0122600-00",0.0104635968814343,0.1413904519777,-0.8099335932591031,"OS02G0122600",null,122.310470331139,112.19699871174,56.5908938713241,77.1740690328846,"no","OS02G0122600","Calcium-binding protein KIC [Source:Projected from Arabidopsis thaliana (AT2G46600) UniProtKB/Swiss-Prot;Acc:Q9ZPX9]","EF-Hand type domain containing protein. (Os02t0122600-00)",2,1187089,1187904,"GO:0005509;GO:0010091","calcium ion binding;trichome branching","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]"]
["OS02T0106800-01",0.0105104164790563,0.141627509316714,-0.243139090206612,"OS02G0106800",null,1954.92901745936,1959.84482153351,1718.21662254141,1589.39506729751,"no","OS02G0106800","Os02g0106800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETC8]","TMPIT-like family protein. (Os02t0106800-01)",2,397365,403411,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0288000-02",0.0105118444291137,0.141627509316714,1.00809417664951,"OS03G0288000","MT1B",2422.53645006923,1564.44909423985,3753.3360835543,4265.49835102454,"no","OS03G0288000","Metallothionein-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q10N03]","Similar to Metallothionein. (Os03t0288000-01);Similar to Metallothionein. (Os03t0288000-02)",3,9957175,9958291,"GO:0008270;GO:0046872;GO:0046870;GO:0016151;GO:0005507","zinc ion binding;metal ion binding;cadmium ion binding;nickel cation binding;copper ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with cadmium (Cd) ions. [GOC:ai];Interacting selectively and non-covalently with nickel (Ni) cations. [GOC:ai];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai]"]
["OS04T0138800-00",0.0105026489405874,0.141627509316714,-1.00815089469782,"OS04G0138800",null,66.3986546443878,76.3234044320216,33.7112601185783,37.2477328152129,"no","OS04G0138800","Os04g0138800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W6L2]","Similar to OSIGBa0140L04.2 protein. (Os04t0138800-00)",4,2649112,2649831,"GO:0003676;GO:0006468;GO:0005524;GO:0004672;GO:0008270;GO:0016020;GO:0016021","nucleic acid binding;protein phosphorylation;ATP binding;protein kinase activity;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0617900-01",0.0105178021801227,0.141627509316714,5.79716831147026,"OS04G0617900",null,8.15403135540923,3.08799079023137,69.2750597390346,555.848674426726,"no","OS04G0617900","Os04g0617900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WEU7]","Similar to germin-like protein subfamily 1 member 11. (Os04t0617900-01)",4,31393340,31395182]
["OS04T0636900-02",0.0105047906381014,0.141627509316714,-0.260001182774976,"OS04G0636900",null,1638.96030243726,1539.87807406204,1278.17363743853,1376.43371224474,"no","OS04G0636900","OSJNBb0034I13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9Q1]","RNA-binding region RNP-1  (RNA recognition motif) domain containing protein. (Os04t0636900-01);RNA-binding region RNP-1  (RNA recognition motif) domain containing protein. (Os04t0636900-02)",4,32390377,32392487,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS05T0117600-00",0.0105079289647454,0.141627509316714,0.27931260449606204,"OS05G0117600",null,893.885687336737,871.842733108656,1114.25518622504,1028.66195812187,"no","OS05G0117600","E3 UFM1-protein ligase 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:B9FM64]","Hypothetical conserved gene. (Os05t0117600-00)",5,926397,933728,"GO:0016874","ligase activity","Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah]"]
["OS10T0112600-01",0.0104977675747348,0.141627509316714,-0.328619965471355,"OS10G0112600",null,744.592055885481,669.533547704774,570.290263809168,555.774888248988,"no","OS10G0112600","Transmembrane 9 superfamily member [Source:UniProtKB/TrEMBL;Acc:Q7G5M7]","Nonaspanin (TM9SF) family protein. (Os10t0112600-01)",10,840130,843850,"GO:0016021;GO:0005840;GO:0006412;GO:0003735;GO:0016020","integral component of membrane;ribosome;translation;structural constituent of ribosome;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0130500-00",0.010518225276238,0.141627509316714,0.93057043413608,"OS12G0130500",null,49.3486749489578,42.2847681011737,90.3585615176153,84.2974824077267,"no","OS12G0130500","Os12g0130500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y700]","Similar to D-mannose binding lectin family protein. (Os12t0130500-00)",12,1473487,1476097,"GO:0016310;GO:0016301;GO:0004674;GO:0048544;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;protein serine/threonine kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0490050-01",0.0105299757760148,0.141723268682293,0.39656545148215405,"OS12G0490050",null,1986.52588896157,1810.59193333899,2681.23752342066,2317.1758448861,"no","OS12G0490050","Os12g0490000 protein [Source:UniProtKB/TrEMBL;Acc:B9GD78]","Conserved hypothetical protein. (Os12t0490050-01)",12,18386470,18387536,"GO:0003690;GO:0006355","double-stranded DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with double-stranded DNA. [GOC:elh, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS02T0644100-01",0.010544252044412299,0.14172810754988402,0.24281069851681703,"OS02G0644100",null,3641.86958126425,3940.61227575067,4369.27853289885,4603.03999905016,"no","OS02G0644100","Os02g0644100 protein [Source:UniProtKB/TrEMBL;Acc:Q6H660]","Similar to Heat shock protein STI (Stress inducible protein) (GmSTI). (Os02t0644100-01);Similar to heat shock protein STI. (Os02t0644100-02)",2,25895499,25899892]
["OS05T0279400-02",0.0105437834836269,0.14172810754988402,0.42820221274882503,"OS05G0279400",null,716.553078700025,735.988885411983,1047.01564912525,907.460604834953,"no","OS05G0279400","EBR1 [Source:UniProtKB/TrEMBL;Acc:Q0DJH5]","Zinc finger, RING-type domain containing protein. (Os05t0279400-01);Zinc finger, RING-type domain containing protein. (Os05t0279400-02)",5,11660556,11666374,"GO:0003676;GO:0016020;GO:0016021","nucleic acid binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0584200-01",0.0105400895879948,0.14172810754988402,-0.561105336850456,"OS07G0584200",null,233.272225654572,201.748731628449,140.501529611563,154.348138065769,"no","OS07G0584200","Os07g0584200 protein [Source:UniProtKB/TrEMBL;Acc:Q0D540]","BTB/POZ fold domain containing protein. (Os07t0584200-01)",7,23685409,23688256]
["OS03T0180300-02",0.0105506011109713,0.141751084055582,0.291827224140293,"OS03G0180300",null,1070.15597140329,1141.15040266177,1364.39282599771,1342.66582819512,"no","OS03G0180300","Ataxin-2 C-terminal region family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10QX0]","Similar to Ataxin-2 C-terminal region family protein, expressed. (Os03t0180300-01);Similar to Ataxin-2 C-terminal region family protein, expressed. (Os03t0180300-02);Hypothetical conserved gene. (Os03t0180300-03);Hypothetical conserved gene. (Os03t0180300-04)",3,4203524,4210236,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0568800-01",0.0105616975751254,0.14183779530339802,-0.21987868263961502,"OS09G0568800",null,3621.13008236465,3682.75313036407,3103.17240639619,3168.21661569202,"no","OS09G0568800","Os09g0568800 protein [Source:UniProtKB/TrEMBL;Acc:Q652P8]","Similar to Ribosomal protein S25 (40S ribosomal 25S subunit). (Os09t0568800-01)",9,22701807,22703104,"GO:0005840","ribosome","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732]"]
["OS04T0457800-02",0.0105811738124658,0.14203691666012902,-0.26230781194088304,"OS04G0457800",null,1502.36226019186,1451.7738375256,1189.75052698615,1273.26970903678,"no","OS04G0457800","OSJNBa0036B21.13 protein [Source:UniProtKB/TrEMBL;Acc:Q7XV05]","Similar to SERK1 (Fragment). (Os04t0457800-01);Similar to H0523F07.15 protein. (Os04t0457800-02)",4,22867357,22872511,"GO:0006468;GO:0005524;GO:0004672;GO:0009742;GO:0007178;GO:0004675;GO:0007166;GO:0005886;GO:0018108;GO:0004713;GO:0006952;GO:0016310;GO:0016301;GO:0030154;GO:0004674;GO:0007165;GO:0000166;GO:0016020;GO:0016021;GO:0016740;GO:0005102","protein phosphorylation;ATP binding;protein kinase activity;brassinosteroid mediated signaling pathway;transmembrane receptor protein serine/threonine kinase signaling pathway;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;peptidyl-tyrosine phosphorylation;protein tyrosine kinase activity;defense response;phosphorylation;kinase activity;cell differentiation;protein serine/threonine kinase activity;signal transduction;nucleotide binding;membrane;integral component of membrane;transferase activity;receptor binding","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm];A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. [GOC:bf, GOC:ceb, ISBN:0198506732]"]
["OS12T0614200-00",0.0105886174410013,0.14207441372748,-0.9500618009670591,"OS12G0614200",null,91.7328527483539,76.1704394923737,46.8338432038544,40.0746283309334,"no","OS12G0614200","Lipase family protein [Source:UniProtKB/TrEMBL;Acc:Q2QM81]","Similar to Lipase family protein. (Os12t0614200-00)",12,26034041,26035237,"GO:0006629;GO:0016787","lipid metabolic process;hydrolase activity","The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS06T0354700-03",0.0105971393757114,0.14212633986248202,-1.00455869946834,"OS06G0354700",null,117.492213248942,150.78452347845,60.129680528847,73.5854997115737,"no","OS06G0354700","Pheophytinase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G13800) UniProtKB/Swiss-Prot;Acc:Q9FFZ1]","Alpha/beta hydrolase-fold family protein, Chlorophyll degradation during senescence (Os06t0354700-01);Similar to Hydrolase, alpha/beta fold family protein. (Os06t0354700-02);Similar to Hydrolase, alpha/beta fold family protein. (Os06t0354700-03)",6,14527016,14531805,"GO:0016787;GO:0009507;GO:0015996;GO:0080124","hydrolase activity;chloroplast;chlorophyll catabolic process;pheophytinase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl];Catalysis of the reaction: pheophytin + H2O = phytol + pheophorbide. [PMID:19304936]"]
["OS01T0627900-01",0.010695752375914,0.142180086915623,0.779263835815971,"OS01G0627900",null,127.716986155639,153.886030930716,267.41054084317,215.89201590212,"no","OS01G0627900","Os01g0627900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5H7]","Similar to Cytochrome P450. (Os01t0627900-01)",1,25066171,25068280,"GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016020;GO:0016021","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0672400-03",0.0106680343025547,0.142180086915623,0.649742682635652,"OS01G0672400","DI19-3",330.546474345428,362.779529042018,472.190891474899,615.560195069981,"no","OS01G0672400","Protein DEHYDRATION-INDUCED 19 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5QMP3]","Drought induced 19 family protein. (Os01t0672400-01);Similar to Protein DEHYDRATION-INDUCED 19 homolog 3. (Os01t0672400-02);Drought induced 19 family protein. (Os01t0672400-03);Drought induced 19 family protein. (Os01t0672400-04)",1,27601487,27604913]
["OS01T0719000-03",0.0106330844855737,0.142180086915623,0.679159496851363,"OS01G0719000",null,160.022865349906,184.722596615644,248.276951574531,303.731768681819,"no","OS01G0719000","Os01g0719000 protein [Source:UniProtKB/TrEMBL;Acc:Q5JL98]","Protein of unknown function DUF581 family protein. (Os01t0719000-01);Protein of unknown function DUF581 family protein. (Os01t0719000-02);Protein of unknown function DUF581 family protein. (Os01t0719000-03)",1,29960694,29963065]
["OS01T0767600-01",0.0106735843482934,0.142180086915623,0.511253132106774,"OS01G0767600",null,669.649825062983,541.4277185539,827.397896601428,898.735993800681,"no","OS01G0767600","Os01g0767600 protein [Source:UniProtKB/TrEMBL;Acc:Q8LIX4]","Conserved hypothetical protein. (Os01t0767600-01)",1,32346889,32350070,"GO:0005783","endoplasmic reticulum","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732]"]
["OS01T0954400-01",0.0106684708656691,0.142180086915623,-0.27025586899762605,"OS01G0954400",null,1298.52949334892,1422.53442403325,1118.15800649202,1138.0732964976,"no","OS01G0954400","Os01g0954400 protein [Source:UniProtKB/TrEMBL;Acc:Q941Y7]","Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor. (Os01t0954400-01)",1,42025709,42027877]
["OS02T0139000-01",0.0106447066813047,0.142180086915623,0.49023566770278104,"OS02G0139000","PHR3",259.909749453669,262.216567712258,404.549518095892,328.867908250554,"no","OS02G0139000","Protein PHOSPHATE STARVATION RESPONSE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6YXZ4]","Transcription factor, Regulation of Pi signaling and homeostasis, Tolerance to low-Pi stress (Os02t0139000-01)",2,2075629,2079136,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0170100-02",0.010697775163035399,0.142180086915623,-0.582653847109328,"OS02G0170100",null,10139.8565073012,12292.4871716428,6859.54201784787,8119.30429997276,"no","OS02G0170100","Os02g0170100 protein [Source:UniProtKB/TrEMBL;Acc:Q6H713]","Glycine cleavage H-protein family protein. (Os02t0170100-01);Glycine cleavage H-protein family protein. (Os02t0170100-02)",2,3827878,3830121,"GO:0005960;GO:0019464;GO:0005739","glycine cleavage complex;glycine decarboxylation via glycine cleavage system;mitochondrion","A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T. [GOC:mah, MetaCyc:GCVMULTI-CPLX];The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732]"]
["OS02T0274100-01",0.010695753769354001,0.142180086915623,0.510022394953049,"OS02G0274100","MFP",1670.50597853712,1616.57358613497,2085.9002251698,2595.13873504171,"no","OS02G0274100","3-hydroxyacyl-CoA dehydrogenase [Source:UniProtKB/TrEMBL;Acc:S4U008]","3-hydroxyacyl-CoA dehydrogenase, Multifunctional protein,  RNA- and microtubule-binding protein, Salicylic acid (SA) biosynthesis, Maintenance of root meristem activity, Beta -oxidation of fatty acids (Os02t0274100-01);Similar to Peroxisomal fatty acid beta-oxidation multifunctional protein. (Os02t0274100-02)",2,10001543,10010228,"GO:0003857;GO:0006635;GO:0005777;GO:0006631;GO:0016491;GO:0055114;GO:0070403;GO:0003824;GO:0008017;GO:0005856;GO:0005874;GO:0003723;GO:0008152;GO:0006629;GO:0005737;GO:0016853;GO:0016829;GO:0003729;GO:0004165;GO:0004300;GO:0008692;GO:0018812;GO:0009695;GO:0009908;GO:0005618;GO:0009506;GO:0009507","3-hydroxyacyl-CoA dehydrogenase activity;fatty acid beta-oxidation;peroxisome;fatty acid metabolic process;oxidoreductase activity;oxidation-reduction process;NAD+ binding;catalytic activity;microtubule binding;cytoskeleton;microtubule;RNA binding;metabolic process;lipid metabolic process;cytoplasm;isomerase activity;lyase activity;mRNA binding;dodecenoyl-CoA delta-isomerase activity;enoyl-CoA hydratase activity;3-hydroxybutyryl-CoA epimerase activity;3-hydroxyacyl-CoA dehydratase activity;jasmonic acid biosynthetic process;flower development;cell wall;plasmodesma;chloroplast","Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H(+). [EC:1.1.1.35];A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:0198506732, MetaCyc:FAO-PWY];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions. [GOC:mah];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];Catalysis of the reaction: 3-cis-dodecenoyl-CoA = 2-trans-dodecenoyl-CoA. [EC:5.3.3.8];Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2-enoyl-CoA + H2O. [EC:4.2.1.17];Catalysis of the reaction: (S)-3-hydroxybutanoyl-CoA = (R)-3-hydroxybutanoyl-CoA. [EC:5.1.2.3];Catalysis of the reaction: alkene-CoA + H2O = alcohol-CoA. Substrates are crotonoyl-CoA (producing 3-hydroxyacyl-CoA) and 2,3-didehydro-pimeloyl-CoA (producing 3-hydroxypimeloyl-CoA). [UM-BBD_ruleID:bt0291];The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative. [ISBN:0387969845];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS02T0314300-00",0.0106307269352245,0.142180086915623,-0.7527787765451741,"OS02G0314300","CAX1C",441.336947111525,407.614784310541,210.752294417345,293.066084935005,"no","OS02G0314300","Vacuolar cation/proton exchanger 1c [Source:UniProtKB/Swiss-Prot;Acc:Q5KTQ9]","Sodium/calcium exchanger membrane region domain containing protein. (Os02t0314300-00)",2,12432303,12448557,"GO:0070588;GO:0005774;GO:0005773;GO:0009705;GO:0015297;GO:0006816;GO:0098655;GO:0008324;GO:0006812;GO:0006810;GO:0055085;GO:0006811;GO:0015369;GO:0016021;GO:0016020","calcium ion transmembrane transport;vacuolar membrane;vacuole;plant-type vacuole membrane;antiporter activity;calcium ion transport;cation transmembrane transport;cation transmembrane transporter activity;cation transport;transport;transmembrane transport;ion transport;calcium:proton antiporter activity;integral component of membrane;membrane","A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0471245208];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Enables the transfer of cation from one side of the membrane to the other. [GOC:dgf, GOC:mtg_transport, ISBN:0815340729];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in). [TC:2.A.19.2.-];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0755400-01",0.0106172312485235,0.142180086915623,-0.40038448612265604,"OS02G0755400",null,1369.87726770875,1591.34458723256,1071.32416328817,1172.26433974002,"no","OS02G0755400","Os02g0755400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DXG2]","Similar to RNA recognition motif-containing protein SEB-4. (Os02t0755400-01)",2,31781578,31787144,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0307400-01",0.0106870185767055,0.142180086915623,-0.35633315493405304,"OS03G0307400",null,602.379066380857,566.131644875751,432.150809449593,480.628379293408,"no","OS03G0307400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10MI7]","Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0307400-01)",3,10939242,10944192,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0452100-01",0.0106180525143056,0.142180086915623,-0.41037861905044404,"OS04G0452100",null,386.297235462512,387.028179042331,292.71152002409,289.158537135871,"no","OS04G0452100","Os04g0452100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WAS3]","Cryptochrome 1, blue light photoreceptor (Os04t0452100-01);Cryptochrome 1b, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os04t0452100-02)",4,22550007,22555038,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0497600-02",0.010701799694777001,0.142180086915623,"-Inf","OS04G0497600",null,15.9895707911321,32.4339996764907,0,0,"no","OS04G0497600","OSJNBa0067K08.18 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQH8]","Lupus La protein family protein. (Os04t0497600-01);Non-protein coding transcript. (Os04t0497600-02)",4,24882776,24886709,"GO:0030529;GO:0003723;GO:0006396;GO:0005634;GO:0003676","intracellular ribonucleoprotein complex;RNA binding;RNA processing;nucleus;nucleic acid binding","An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS04T0645600-01",0.0106957465714466,0.142180086915623,-0.46175854197904104,"OS04G0645600",null,1609.87900444519,1647.20206392788,1061.48002126519,1303.48867360886,"no","OS04G0645600","OSJNBa0070O11.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQE4]","Protein of unknown function DUF6, transmembrane domain containing protein. (Os04t0645600-01)",4,32856597,32860277,"GO:0006810;GO:0016021;GO:0016020","transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0708600-01",0.0106392093405356,0.142180086915623,-0.329704625062375,"OS06G0708600",null,1179.27678477606,1093.1487397419,847.887703003114,960.279871637032,"no","OS06G0708600","Os06g0708600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9H7]","Zinc finger, C2H2-like domain containing protein. (Os06t0708600-01)",6,29976876,29977647]
["OS07T0496500-00",0.0106455133682763,0.142180086915623,0.47988097046438905,"OS07G0496500",null,305.816510122572,310.816401649459,473.83512872623,386.138764369106,"no","OS07G0496500","Os07g0496500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X620]","Hypothetical protein. (Os07t0496500-00)",7,18611376,18614400,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0553633-01",0.0107035284074997,0.142180086915623,-1.12786912498692,"OS07G0553633",null,95.5178025702256,125.743385483535,46.8847677306874,54.36238111677,"no","OS07G0553633","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q6ZF83]","Serine/threonine protein kinase-related domain containing protein. (Os07t0553633-01)",7,22036962,22039724,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0288400-02",0.0106720177038924,0.142180086915623,"-Inf","OS08G0288400",null,30.1779101634019,28.6194179120789,0,0,"no","OS08G0288400","Transmembrane 9 superfamily member [Source:UniProtKB/TrEMBL;Acc:Q6Z2C9]","Similar to transmembrane 9 superfamily protein member 2. (Os08t0288400-01);Nonaspanin (TM9SF) family protein. (Os08t0288400-02)",8,11460357,11462712,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0464400-01",0.010612177300096599,0.142180086915623,0.247571357957227,"OS10G0464400",null,1140.54513583787,1114.20621314451,1336.12898768154,1340.72732703629,"no","OS10G0464400","GS1-like protein [Source:UniProtKB/TrEMBL;Acc:Q8H921]","Haloacid dehalogenase-like hydrolase domain containing protein. (Os10t0464400-01)",10,17133478,17137843,"GO:0009231;GO:0016310;GO:0016301;GO:0016787;GO:0008152;GO:0008531","riboflavin biosynthetic process;phosphorylation;kinase activity;hydrolase activity;metabolic process;riboflavin kinase activity","The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: ATP + riboflavin = ADP + FMN + 2 H(+). [EC:2.7.1.26, RHEA:14360]"]
["OS11T0217300-01",0.0106991062875047,0.142180086915623,0.40968398414252,"OS11G0217300",null,331.893823712416,309.805842666912,403.345892773544,449.084609337353,"no","OS11G0217300","GHMP kinases putative ATP-binding protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R8T7]","Mevalonate and galactokinase family protein. (Os11t0217300-01)",11,6109578,6113725,"GO:0005829;GO:0016310;GO:0016301;GO:0042546;GO:0047940;GO:0005524","cytosol;phosphorylation;kinase activity;cell wall biogenesis;glucuronokinase activity;ATP binding","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:0198506732];Catalysis of the reaction: D-glucuronate + ATP = 1-phospho-alpha-D-glucuronate + ADP + 2 H(+). [EC:2.7.1.43, RHEA:17008];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS12T0193100-02",0.010702979602178002,0.142180086915623,0.751108246579213,"OS12G0193100",null,244.031823506702,311.623903897132,483.608469402756,451.607485625963,"no","OS12G0193100","Protein FLX-like 3 [Source:Projected from Arabidopsis thaliana (AT1G55170) UniProtKB/Swiss-Prot;Acc:Q9C717]","Similar to cDNA clone:J013157P20, full insert sequence. (Os12t0193100-01);Similar to cDNA clone:J013157P20, full insert sequence. (Os12t0193100-02);Similar to cDNA clone:J013157P20, full insert sequence. (Os12t0193100-03);Similar to cDNA clone:J013157P20, full insert sequence. (Os12t0193100-04)",12,4748030,4760834]
["OS12T0284000-03",0.0106798491036633,0.142180086915623,0.386062969560783,"OS12G0284000",null,783.582828990452,777.415006255091,1019.57550660348,1020.37126186533,"no","OS12G0284000","Os12g0284000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QTS8]","Regulator of chromosome condensation, RCC1 domain containing protein. (Os12t0284000-01);Similar to predicted protein. (Os12t0284000-02);Regulator of chromosome condensation, RCC1 domain containing protein. (Os12t0284000-03);Hypothetical conserved gene. (Os12t0284000-04)",12,10771046,10775430]
["OS01T0290000-02",0.0107240218889798,0.142191333004089,0.272764420082627,"OS01G0290000",null,1773.64605967515,1732.27708271394,2185.6591435064,2049.91865643651,"no","OS01G0290000","Os01g0290000 protein [Source:UniProtKB/TrEMBL;Acc:Q9LGZ3]","Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment). (Os01t0290000-01);Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment). (Os01t0290000-02);Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment). (Os01t0290000-03);Similar to retrotransposon protein SINE subclass. (Os01t0290000-04)",1,10492039,10495682,"GO:0004190;GO:0006629;GO:0006508;GO:0030163;GO:0016787;GO:0008233","aspartic-type endopeptidase activity;lipid metabolic process;proteolysis;protein catabolic process;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS02T0264800-01",0.0107313618251534,0.142191333004089,-0.5338737772587321,"OS02G0264800",null,1097.73647122197,1361.80393849203,812.762320600223,886.036463453498,"no","OS02G0264800","Os02g0264800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETY5]","Protein of unknown function DUF1070 family protein. (Os02t0264800-01)",2,9416888,9418713,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0749500-01",0.0107313006912183,0.142191333004089,0.363947077868355,"OS03G0749500",null,3137.60257164063,2847.12750859332,3606.83013402016,4095.17059090426,"no","OS03G0749500","Glycosyl hydrolase family 3 N terminal domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10CU4]","Similar to Exo-beta-glucanase. (Os03t0749500-01)",3,30883130,30887955,"GO:0008422;GO:0005886;GO:0004553;GO:0005975;GO:0016787;GO:0009251;GO:0016020;GO:0016021","beta-glucosidase activity;plasma membrane;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;glucan catabolic process;membrane;integral component of membrane","Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glucans, polysaccharides consisting only of glucose residues. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0643300-01",0.0107267184001982,0.142191333004089,-0.25546190393376,"OS04G0643300",null,2087.43202698476,2301.58246898578,1812.86001401586,1863.90030018663,"no","OS04G0643300","Os04g0643300 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9M3]","Similar to 3-ketoacyl carrier protein synthase III. (Os04t0643300-01)",4,32741436,32746458,"GO:0004315;GO:0006633;GO:0008152;GO:0003824;GO:0009507;GO:0009570","3-oxoacyl-[acyl-carrier-protein] synthase activity;fatty acid biosynthetic process;metabolic process;catalytic activity;chloroplast;chloroplast stroma","Catalysis of the reaction: acyl-[acyl-carrier protein] + malonyl-[acyl-carrier protein] = 3-oxoacyl-[acyl-carrier protein] + CO2 + [acyl-carrier protein]. [EC:2.3.1.41];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS06T0196550-00",0.0107288129538621,0.142191333004089,-0.538788896221547,"OS06G0196550",null,663.129157207079,703.944763521815,429.509495981802,511.513809576469,"no","OS06G0196550","Os06g0196550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WTX1]","Hypothetical gene. (Os06t0196550-00)",6,4897253,4900332]
["OS07T0245100-02",0.0107322994863652,0.142191333004089,-0.672851633911802,"OS07G0245100",null,1155.92643981887,1466.52685247877,893.61416646043,751.360588837134,"no","OS07G0245100","Os07g0245100 protein [Source:UniProtKB/TrEMBL;Acc:Q0D7H8]","Similar to Cytosine deaminase (EC 3.5.4.1). (Os07t0245100-01);Similar to cDNA clone:J023115F20, full insert sequence. (Os07t0245100-02)",7,8075642,8078200,"GO:0003824;GO:0005829;GO:0009451;GO:0016787;GO:0008270;GO:0008251;GO:0002100;GO:0047974","catalytic activity;cytosol;RNA modification;hydrolase activity;zinc ion binding;tRNA-specific adenosine deaminase activity;tRNA wobble adenosine to inosine editing;guanosine deaminase activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a tRNA molecule. [GOC:mah, IMG:00700];The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine. [GOC:hjd, ISBN:155581073X];Catalysis of the reaction: guanosine + H2O = xanthosine + NH3. [EC:3.5.4.15, MetaCyc:GUANOSINE-DEAMINASE-RXN]"]
["OS11T0431400-00",0.0107515515696662,0.142384656938206,-0.752888311084959,"OS11G0431400",null,346.936018586532,280.581071811984,162.346944154065,210.03069420342,"no","OS11G0431400","Os11g0431400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y283]","Similar to Serine carboxypeptidase. (Os11t0431400-00)",11,13864245,13869067,"GO:0004185;GO:0006508","serine-type carboxypeptidase activity;proteolysis","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS03T0807900-02",0.0107769492665245,0.14257264591660102,"Inf","OS03G0807900",null,0,0,33.1965910281369,22.9652390454985,"no","OS03G0807900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q84M38]","Chaperonin-like RbcX family protein. (Os03t0807900-01);Chaperonin-like RbcX family protein. (Os03t0807900-02)",3,33771756,33773581]
["OS05T0542200-02",0.0107797464017854,0.14257264591660102,0.601686730546339,"OS05G0542200",null,211.489448394852,228.213251219924,349.600107731802,317.644212937997,"no","OS05G0542200","Os05g0542200 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKP0]","Alpha/beta hydrolase fold-1 domain containing protein. (Os05t0542200-01);Similar to catalytic/ hydrolase. (Os05t0542200-02);Similar to cDNA clone:J023112L03, full insert sequence. (Os05t0542200-03)",5,26913398,26917388,"GO:0016787;GO:0016020;GO:0016021","hydrolase activity;membrane;integral component of membrane","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0402100-01",0.0107776464755491,0.14257264591660102,-0.255974718891469,"OS09G0402100",null,1228.20097290852,1287.69215952648,1040.10160115227,1066.76054916342,"no","OS09G0402100","DNA binding protein PF1 [Source:UniProtKB/TrEMBL;Acc:Q69MW7]","PF1 protein. (Os09t0402100-01)",9,14106185,14107309,"GO:0000785;GO:0006334;GO:0005694;GO:0000786;GO:0003677;GO:0005634;GO:0006355","chromatin;nucleosome assembly;chromosome;nucleosome;DNA binding;nucleus;regulation of transcription, DNA-templated","The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. [GOC:elh, PMID:20404130];The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS10T0317900-02",0.0107887717391136,0.14263027008801402,-0.614340793509743,"OS10G0317900","CYP75B4",1147.1707639889,1190.33438692853,659.295883981503,867.628639218471,"no","OS10G0317900","Flavonoid 3'-monooxygenase CYP75B4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LM92]","Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis (Os10t0317900-01);Similar to Flavonoid 3-monooxygenase. (Os10t0317900-02);Non-protein coding transcript. (Os10t0317900-03)",10,8494248,8504238,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0044550;GO:0016020;GO:0016709;GO:0009813;GO:0016021;GO:0016711","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;flavonoid biosynthetic process;integral component of membrane;flavonoid 3'-monooxygenase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: a flavonoid + NADPH + H+ + O2 = 3'-hydroxyflavonoid + NADP+ + H2O. [EC:1.14.13.21]"]
["OS11T0585900-01",0.0108181367379467,0.14264812844961,-0.22708504273085903,"OS11G0585900",null,2736.69677365922,2914.033975715,2436.33555166718,2391.41925306964,"no","OS11G0585900","NA","Similar to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1). (Os11t0585900-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0753100-02",0.0108009634595207,0.14264812844961,0.405407138579419,"OS01G0753100",null,552.269820272133,581.076196476677,813.970620989081,687.103825314932,"no","OS01G0753100","Os01g0753100 protein [Source:UniProtKB/TrEMBL;Acc:Q5JMM6]","Alcohol dehydrogenase superfamily, zinc-containing protein. (Os01t0753100-01);Similar to reticulon-4-interacting protein 1. (Os01t0753100-02)",1,31599199,31604576,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS01T0769700-02",0.010805942787496199,0.14264812844961,-0.37042822415192,"OS01G0769700",null,1483.41493362429,1736.08054585427,1221.83271294419,1268.61720655934,"no","OS01G0769700","Os01g0769700 protein [Source:UniProtKB/TrEMBL;Acc:Q94EF4]","Receptor-like kinase, Control of reproductive growth and development, Repression of cell death (Os01t0769700-01);Similar to predicted protein. (Os01t0769700-02)",1,32461878,32465053,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0295100-02",0.0107972994769741,0.14264812844961,0.36606141598777703,"OS05G0295100",null,463.521663535231,423.941293466214,601.784946771642,542.003488108921,"no","OS05G0295100","Os05g0295100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DJF0]","Hypothetical conserved gene. (Os05t0295100-01);Protein of unknown function DUF1253 family protein. (Os05t0295100-02)",5,13027560,13046685,"GO:0034511;GO:0032040;GO:0005730;GO:0000462;GO:0019843;GO:0005634;GO:0009303;GO:0009553;GO:0009793","U3 snoRNA binding;small-subunit processome;nucleolus;maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);rRNA binding;nucleus;rRNA transcription;embryo sac development;embryo development ending in seed dormancy","Interacting selectively and non-covalently with U3 small nucleolar RNA. [GOC:mah];A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12068309, PMID:12957375, PMID:15120992, PMID:15590835];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. [GOC:curators];Interacting selectively and non-covalently with ribosomal RNA. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template. [GOC:jl, ISBN:0198506732];The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]"]
["OS07T0567300-01",0.0108139464925501,0.14264812844961,-0.253164887714361,"OS07G0567300",null,2043.21340931468,2144.23416012733,1765.36646362721,1748.12705943979,"no","OS07G0567300","Os07g0567300 protein [Source:UniProtKB/TrEMBL;Acc:Q84SM4]","Hypothetical conserved gene. (Os07t0567300-01)",7,22791814,22798437]
["OS12T0479400-03",0.0108161508215116,0.14264812844961,-0.338462065937486,"OS12G0479400","ARF24",635.018089324262,624.45480349812,482.698095862038,513.398808767302,"no","OS12G0479400","Auxin response factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q2QQX6]","Similar to Auxin response factor 1. (Os12t0479400-01);Similar to Auxin response factor 24. (Os12t0479400-02);Similar to Isoform 2 of Auxin response factor 24. (Os12t0479400-03)",12,17571844,17577848,"GO:0005634;GO:0009734;GO:0006355;GO:0006351;GO:0009725;GO:0003677","nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated;response to hormone;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0852900-02",0.0108358158597027,0.14269648540760202,"-Inf","OS01G0852900",null,33.1591995443563,45.9868672566777,0,0,"no","OS01G0852900","Os01g0852900 protein [Source:UniProtKB/TrEMBL;Acc:Q8W0G9]","Pentatricopeptide repeat domain containing protein. (Os01t0852900-01);Hypothetical conserved gene. (Os01t0852900-02)",1,36732836,36737403,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS03T0285800-02",0.0108321911992568,0.14269648540760202,-0.40444697600141605,"OS03G0285800","MPK5",796.772722127615,856.116130223385,588.078439913377,660.721816466125,"no","OS03G0285800","Mitogen-activated protein kinase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10N20]","MAP Kinase. (Os03t0285800-01);MAP Kinase. (Os03t0285800-02)",3,9847723,9850384,"GO:0009414;GO:0004707;GO:0042742;GO:0009409;GO:0010468;GO:0050832;GO:0005515;GO:0006952;GO:0000165;GO:0005737;GO:0016310;GO:0016301;GO:0005634;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:1901002;GO:0016740;GO:0005622;GO:0000169;GO:0006970;GO:0006979;GO:0009555;GO:0009611;GO:0009617;GO:0010120;GO:0010183;GO:0010200;GO:0010224;GO:0010229;GO:0048481;GO:0080136","response to water deprivation;MAP kinase activity;defense response to bacterium;response to cold;regulation of gene expression;defense response to fungus;protein binding;defense response;MAPK cascade;cytoplasm;phosphorylation;kinase activity;nucleus;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;positive regulation of response to salt stress;transferase activity;intracellular;activation of MAPK activity involved in osmosensory signaling pathway;response to osmotic stress;response to oxidative stress;pollen development;response to wounding;response to bacterium;camalexin biosynthetic process;pollen tube guidance;response to chitin;response to UV-B;inflorescence development;plant ovule development;priming of cellular response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli. [GOC:ma, ISBN:0198547684];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Any process that activates or increases the frequency, rate or extent of response to salt stress. [GOC:TermGenie, PMID:22627139];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Any process that initiates the activity of the inactive enzyme MAP kinase activity during osmolarity sensing. [PMID:9561267];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb];The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin. [GOC:pz];The process in which the growth of pollen tube is directed towards the female gametophyte. [GOC:lr];A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm. [GOC:tb];The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. [GOC:tb];The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb];The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress. [PMID:19318610]"]
["OS05T0223000-01",0.010832101314588,0.14269648540760202,-0.45218847666646306,"OS05G0223000",null,306.795429747272,339.67898692545,234.169216019272,238.360415747137,"no","OS05G0223000","Os05g0223000 protein [Source:UniProtKB/TrEMBL;Acc:B9FJ38]","Similar to TCH2 (TOUCH 2); calcium ion binding. (Os05t0223000-01)",5,7533744,7534582,"GO:0005509;GO:0046872","calcium ion binding;metal ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS02T0660100-00",0.010850381930973001,0.14279183527156,2.54534844750511,"OS02G0660100",null,4.07701567770462,4.11732105364182,27.3197418689151,20.5146259454503,"no","OS02G0660100","Os02g0660100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VMR2]","Hypothetical conserved gene. (Os02t0660100-00)",2,26726617,26727204,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0585500-01",0.0108524038197356,0.14279183527156,-0.630595712956018,"OS07G0585500",null,3823.2214517675,4404.50419713334,2334.86222472549,2979.50519683921,"no","OS07G0585500","Os07g0585500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X8C0]","Conserved hypothetical protein. (Os07t0585500-01)",7,23782164,23783828]
["OS11T0543500-01",0.010865898565063899,0.14290784888499,-0.8545389224555121,"OS11G0543500",null,984.599286165665,1206.37506871705,508.34233977517,703.358603844011,"no","OS11G0543500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R301]","Similar to H0502B11.6 protein. (Os11t0543500-01)",11,19956772,19963299,"GO:0016746;GO:0016020;GO:0016021","transferase activity, transferring acyl groups;membrane;integral component of membrane","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0425400-00",0.0108719286389289,0.14292562985221902,-0.8990177966956091,"OS09G0425400",null,83.5788213929446,80.2877605460156,38.0524976031317,49.8212344389508,"no","OS09G0425400","Os09g0425400 protein [Source:UniProtKB/TrEMBL;Acc:B9G3N8]","Hypothetical protein. (Os09t0425400-00)",9,15426334,15426911]
["OS03T0332400-01",0.0108781746726163,0.142946233375387,0.26678727044760403,"OS03G0332400",null,954.02166858288,909.927952854843,1109.3766608913,1133.18886174868,"no","OS03G0332400","Hydroxyacylglutathione hydrolase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10LW8]","Glyoxalase II (S-2-hydroxyacyl glutathione hydrolase), Salinity adaptation, Abiotic stress tolerance (Os03t0332400-01)",3,12263473,12266428,"GO:0016787;GO:0019243;GO:0004416;GO:0005829","hydrolase activity;methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione;hydroxyacylglutathione hydrolase activity;cytosol","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step. [GOC:ai, GOC:dph, PMID:2198020];Catalysis of the reaction: (S)-(2-hydroxyacyl)glutathione + H2O = glutathione + a 2-hydroxy carboxylate. [EC:3.1.2.6];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0134500-01",0.010996795156702599,0.14306933324561602,-0.321232336843134,"OS01G0134500",null,2121.06740632583,2411.7208071707,1760.17194041153,1867.80784798576,"no","OS01G0134500","Os01g0134500 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZCK9]","Similar to Delta-7-sterol-C5(6)-desaturase (EC 1.3.3.-) (Delta-7-C-5 sterol desaturase) (Delta7-sterol-C5-desaturase). (Os01t0134500-01)",1,1888525,1892262,"GO:0016126;GO:0005789;GO:0008610;GO:0005506;GO:0016491;GO:0055114;GO:0016020;GO:0016021;GO:0000248","sterol biosynthetic process;endoplasmic reticulum membrane;lipid biosynthetic process;iron ion binding;oxidoreductase activity;oxidation-reduction process;membrane;integral component of membrane;C-5 sterol desaturase activity","The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+. [MetaCyc:RXN3O-227]"]
["OS01T0192550-01",0.010958708976199001,0.14306933324561602,1.07187028126567,"OS01G0192550",null,35.6738871799154,47.0168670223651,103.218365144944,70.6105657663964,"no","OS01G0192550","Os01g0192550 protein [Source:UniProtKB/TrEMBL;Acc:C7IXV1]","Conserved hypothetical protein. (Os01t0192550-01)",1,4980670,4981942,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0356400-01",0.0109442541918022,0.14306933324561602,-0.230491529920427,"OS01G0356400",null,2148.58726215033,2039.10325181611,1769.928991079,1799.42576150093,"no","OS01G0356400","MRP-like ABC transporter [Source:UniProtKB/TrEMBL;Acc:Q8GU64]","Similar to multidrug resistance protein ABC transporter family. (Os01t0356400-01)",1,14340326,14357449,"GO:0000325;GO:0055085;GO:0042626;GO:0005774;GO:0016887;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020","plant-type vacuole;transmembrane transport;ATPase activity, coupled to transmembrane movement of substances;vacuolar membrane;ATPase activity;transport;integral component of membrane;ATP binding;nucleotide binding;membrane","A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0663800-02",0.010913863630994199,0.14306933324561602,0.23094868568651103,"OS01G0663800",null,2332.36746573336,2239.04342252578,2747.73743140424,2617.29980074437,"no","OS01G0663800","Os01g0663800 protein [Source:UniProtKB/TrEMBL;Acc:Q5SN38]","Protein of unknown function DUF1296 family protein. (Os01t0663800-01);Hypothetical conserved gene. (Os01t0663800-02)",1,27102158,27110014]
["OS01T0771200-01",0.010959272103883099,0.14306933324561602,0.282604047650925,"OS01G0771200",null,802.152834588383,756.557743606685,922.041288075884,973.956288933999,"no","OS01G0771200","Os01g0771200 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZD06]","Similar to Mal d 1-associated protein. (Os01t0771200-01)",1,32543304,32545191,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS01T0878300-01",0.0109517271823092,0.14306933324561602,-0.5952253685322211,"OS01G0878300",null,822.537912976906,1043.7408870982,585.42304004818,649.943495312926,"no","OS01G0878300","Os01g0878300 protein [Source:UniProtKB/TrEMBL;Acc:Q8L3T4]","Protein kinase, core domain containing protein. (Os01t0878300-01);Hypothetical conserved gene. (Os01t0878300-02)",1,38112112,38117971,"GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0131850-00",0.0108948261359822,0.14306933324561602,-0.523538581003628,"OS02G0131850",null,985.266312261713,1085.04685383449,796.828274348516,643.412915433284,"no","OS02G0131850","Os02g0131850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VEK4]","Hypothetical gene. (Os02t0131850-00)",2,1658840,1659856]
["OS03T0682600-00",0.0109888160252475,0.14306933324561602,1.05838247196203,"OS03G0682600",null,164.099881027611,125.578292136076,358.083759496137,245.198624395621,"no","OS03G0682600","Os03g0682600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1C8]","Protein argonaute 11. (Os03t0682600-00)",3,27165389,27176225,"GO:0031047;GO:0003676","gene silencing by RNA;nucleic acid binding","Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS04T0450701-00",0.0109965092155884,0.14306933324561602,-0.772641245735157,"OS04G0450701",null,2094.56680442075,2547.59240194088,1165.96755476263,1551.29647625596,"no","OS04G0450701","Os04g0450701 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KJ53]","Hypothetical protein. (Os04t0450701-00)",4,22452038,22452591]
["OS04T0608100-01",0.0109488709051605,0.14306933324561602,-0.28655400708898504,"OS04G0608100",null,1082.12110957868,1181.57780684015,947.208543096084,908.703164618377,"no","OS04G0608100","Galacturonokinase [Source:Projected from Arabidopsis thaliana (AT3G10700) UniProtKB/Swiss-Prot;Acc:Q8VYG2]","Ribosomal protein S5 domain 2-type fold domain containing protein. (Os04t0608100-01);Similar to OSIGBa0113I13.15 protein. (Os04t0608100-02)",4,30764550,30770580,"GO:0015074;GO:0016301;GO:0016310;GO:0016773;GO:0005737;GO:0003676;GO:0005524;GO:0008152;GO:0005534;GO:0047912;GO:0046396;GO:0046835;GO:0005829","DNA integration;kinase activity;phosphorylation;phosphotransferase activity, alcohol group as acceptor;cytoplasm;nucleic acid binding;ATP binding;metabolic process;galactose binding;galacturonokinase activity;D-galacturonate metabolic process;carbohydrate phosphorylation;cytosol","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Interacting selectively and non-covalently with the aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides. [CHEBI:28260, GOC:jl, ISBN:0198506732];Catalysis of the reaction: alpha-D-galacturonate + ATP = 1-phospho-alpha-D-galacturonate + ADP + 2 H(+). [EC:2.7.1.44, RHEA:12968];The chemical reactions and pathways involving D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid. D-galacturonic acid is a component of plant gums and bacterial cell walls. [GOC:ai, GOC:jsg, GOC:mah, ISBN:0198506732];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS05T0405000-02",0.0109970649976229,0.14306933324561602,0.500434699293132,"OS05G0405000","PPDK1",1542.13118009177,1239.31363714619,1912.58639842995,2022.15598605153,"no","OS05G0405000","Pyruvate, phosphate dikinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6AVA8]","Orthophosphate dikinase precursor (EC 2.7.9.1). (Os05t0405000-01);Similar to Isoform 2 of Pyruvate, phosphate dikinase 1, chloroplastic. (Os05t0405000-02)",5,19718538,19737605,"GO:0016301;GO:0016310;GO:0016772;GO:0046872;GO:0005524;GO:0003824;GO:0006090;GO:0050242;GO:0005737;GO:0009536;GO:0009507;GO:0015979;GO:0000166;GO:0016740;GO:0005634;GO:0005829;GO:0009570","kinase activity;phosphorylation;transferase activity, transferring phosphorus-containing groups;metal ion binding;ATP binding;catalytic activity;pyruvate metabolic process;pyruvate, phosphate dikinase activity;cytoplasm;plastid;chloroplast;photosynthesis;nucleotide binding;transferase activity;nucleus;cytosol;chloroplast stroma","Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators];Catalysis of the reaction: ATP + phosphate + pyruvate = AMP + diphosphate + 2 H(+) + phosphoenolpyruvate. [EC:2.7.9.1, RHEA:10759];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS05T0420600-01",0.0109880923277118,0.14306933324561602,-0.43686690998034905,"OS05G0420600","CC-1",6939.08068345326,7787.91277296351,5014.14833801266,5865.22924649923,"no","OS05G0420600","Cytochrome c [Source:UniProtKB/Swiss-Prot;Acc:Q0DI31]","Cytochrome c. (Os05t0420600-01)",5,20630043,20632322,"GO:0005758;GO:0006122;GO:0006123;GO:0070469;GO:0005739;GO:0009055;GO:0055114;GO:0046872;GO:0020037","mitochondrial intermembrane space;mitochondrial electron transport, ubiquinol to cytochrome c;mitochondrial electron transport, cytochrome c to oxygen;respiratory chain;mitochondrion;electron carrier activity;oxidation-reduction process;metal ion binding;heme binding","The region between the inner and outer lipid bilayers of the mitochondrial envelope. [GOC:mah];The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III. [ISBN:0716731363];The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV. [ISBN:0716731363];The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. [GOC:ecd, GOC:mah, ISBN:0198547684];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS05T0437900-01",0.0109867043183267,0.14306933324561602,0.364106533893226,"OS05G0437900","TULP8",482.239255233936,469.364921097246,615.386905925484,609.407876699436,"no","OS05G0437900","Tubby-like F-box protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q75HX5]","Tubby family protein. (Os05t0437900-01);Similar to Tubby-like F-box protein 8. (Os05t0437900-03)",5,21460295,21463248,"GO:0035091","phosphatidylinositol binding","Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, ISBN:0198506732, PMID:11395417]"]
["OS06T0561501-01",0.010916155139896199,0.14306933324561602,0.733329164723662,"OS06G0561501",null,109.640771660938,90.465203627922,186.360766482593,146.309612087678,"no","OS06G0561501","Os06g0561501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXV4]","Conserved hypothetical protein. (Os06t0561501-01)",6,21518016,21524098,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0595800-01",0.0109904080134369,0.14306933324561602,-0.662156884113413,"OS06G0595800","AT8",318.00722286096,339.67898692545,177.578322147948,238.035183500465,"no","OS06G0595800","Acyl transferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q69UD7]","Transferase family protein. (Os06t0595800-01)",6,23438800,23440545,"GO:0016410;GO:0016746;GO:0016747;GO:0016740","N-acyltransferase activity;transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule. [GOC:ai];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0529800-01",0.0109069709345677,0.14306933324561602,0.34449114321572105,"OS07G0529800","GOS2",24993.1253582487,24802.7420271383,29931.7043325967,33294.2610225161,"no","OS07G0529800","Protein translation factor SUI1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q0D5W6]","Protein translation factor SUI1 homolog (GOS2 protein). (Os07t0529800-01)",7,20733236,20735266,"GO:0006417;GO:0006413;GO:0003743;GO:0006412","regulation of translation;translational initiation;translation initiation factor activity;translation","Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]"]
["OS07T0558100-00",0.010915032807104002,0.14306933324561602,-1.0597713383093,"OS07G0558100",null,60.8932595270661,67.9817060941628,31.4280656363752,30.3942973970053,"no","OS07G0558100","Myb protein [Source:UniProtKB/TrEMBL;Acc:Q6Z414]","Similar to Myb-related transcription factor LBM1. (Os07t0558100-00)",7,22293736,22295309,"GO:0048658;GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0007275;GO:0003677;GO:0006355;GO:0006351","anther wall tapetum development;cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;multicellular organism development;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","The process whose specific outcome is the progression of the anther wall tapetum over time, from its formation to the mature structure. [GOC:jid, GOC:sm, GOC:tb];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS07T0621300-02",0.010954735732626002,0.14306933324561602,-0.37690938708826704,"OS07G0621300",null,1491.84798673341,1589.00000163257,1093.65696814927,1278.85951959899,"no","OS07G0621300","Os07g0621300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X923]","Similar to FIP1. (Os07t0621300-01);Similar to FIP1. (Os07t0621300-02)",7,25677791,25679803]
["OS08T0232000-01",0.0109259918374152,0.14306933324561602,0.6165679189484841,"OS08G0232000",null,108.46937690528,121.169142839741,182.042674975187,170.044476348567,"no","OS08G0232000","Os08g0232000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDF7]","Similar to Glucose-6-phosphate isomerase. (Os08t0232000-01)",8,8011977,8014326]
["OS10T0334500-00",0.0109341102429038,0.14306933324561602,-2.91711882047363,"OS10G0334500",null,173.273166302446,284.095152701286,12.6841658677106,47.8674605393841,"no","OS10G0334500","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:Q8LMF1]","Similar to Dirigent-like protein, expressed. (Os10t0334500-00)",10,9583113,9584286,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS10T0415400-01",0.0109552422476133,0.14306933324561602,-0.367330119374555,"OS10G0415400",null,467.837549016605,459.081297481063,352.229529095655,366.332606168756,"no","OS10G0415400","Os10g0415400 protein [Source:UniProtKB/TrEMBL;Acc:Q0IXQ0]","Conserved hypothetical protein. (Os10t0415400-01)",10,14513272,14520385]
["OS10T0452100-01",0.0109216661390919,0.14306933324561602,0.5247494779487151,"OS10G0452100",null,172.25391238302,163.663511882262,231.242100819031,252.036833044104,"no","OS10G0452100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q337Q0]","Conserved hypothetical protein. (Os10t0452100-01)",10,16486346,16487160]
["OS10T0519600-02",0.0109999300796659,0.14306933324561602,-0.32257015695970903,"OS10G0519600",null,1173.37371900718,1142.88585875668,880.846833241646,971.336343405363,"no","OS10G0519600","DUF791 domain protein [Source:UniProtKB/TrEMBL;Acc:Q9FWD6]","Protein of unknown function DUF791 family protein. (Os10t0519600-01);Similar to Major Facilitator Superfamily protein, expressed. (Os10t0519600-02)",10,20091716,20094986,"GO:0015689;GO:0015098;GO:0016021;GO:0016020","molybdate ion transport;molybdate ion transmembrane transporter activity;integral component of membrane;membrane","The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid. [GOC:ai];Enables the transfer of molybdate (MoO4 2-) ions from one side of a membrane to the other. Molybdate is the bivalent anion derived from molybdic acid. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0191400-03",0.0109753607244957,0.14306933324561602,-0.501537985822327,"OS11G0191400",null,316.771499687057,357.745589300473,231.40425293109,245.043166861884,"no","OS11G0191400","Probable NAD kinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q53NI2]","ATP-NAD kinase, PpnK-type, all-beta domain containing protein. (Os11t0191400-01);Similar to predicted protein. (Os11t0191400-02);Similar to predicted protein. (Os11t0191400-03)",11,4625100,4631163,"GO:0019674;GO:0006741;GO:0003951;GO:0016310;GO:0008152;GO:0005516;GO:0016301;GO:0009536;GO:0009507;GO:0005524;GO:0000166;GO:0016740","NAD metabolic process;NADP biosynthetic process;NAD+ kinase activity;phosphorylation;metabolic process;calmodulin binding;kinase activity;plastid;chloroplast;ATP binding;nucleotide binding;transferase activity","The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. [GOC:jl, ISBN:0618254153];The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah];Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+). [EC:2.7.1.23, RHEA:18632];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0136500-01",0.0110361098580888,0.14347882058907702,-0.32710849406347103,"OS06G0136500",null,605.997543309604,603.046217714549,501.600305105231,462.167804635427,"no","OS06G0136500","Os06g0136500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DET3]","Cornichon family protein. (Os06t0136500-01)",6,1927256,1930767,"GO:0006810;GO:0016021;GO:0016020","transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0667600-01",0.0110479181725429,0.14353730247120602,-0.40764055829696805,"OS04G0667600",null,418.913360884149,453.934646164011,347.35100376192,310.650050031105,"no","OS04G0667600","Os04g0667600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J984]","Heavy metal transport/detoxification protein domain containing protein. (Os04t0667600-01)",4,34081143,34081905,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS07T0123450-01",0.0110500044321903,0.14353730247120602,0.565076020708098,"OS07G0123450",null,133.366181091797,137.587294777746,207.471366261757,193.394944035435,"no","OS07G0123450","Os07g0123400 protein [Source:UniProtKB/TrEMBL;Acc:C7J4M2]","Hypothetical protein. (Os07t0123450-01)",7,1202528,1203538]
["OS03T0626200-01",0.0110549363459362,0.14354033796899401,-0.43262687161064906,"OS03G0626200",null,855.154038398543,728.765826494603,556.151888045771,617.392552263076,"no","OS03G0626200","Os03g0626200 protein [Source:UniProtKB/TrEMBL;Acc:B9F9T3]","Conserved hypothetical protein. (Os03t0626200-01)",3,23841765,23844369,"GO:0005742;GO:0016020;GO:0016021","mitochondrial outer membrane translocase complex;membrane;integral component of membrane","A large complex of the mitochondrial outer membrane that mediates transport of proteins into all mitochondrial compartments. [PMID:12581629];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0567800-01",0.0110648618725767,0.143608181788855,0.579054461805936,"OS04G0567800",null,155.035345860815,129.037210514425,200.133570368902,224.233856728781,"no","OS04G0567800",null,"Similar to OSIGBa0103M18.3 protein. (Os04t0567800-01)",4,28534919,28536474,"GO:0046872;GO:0003677;GO:0005634;GO:0006355;GO:0006351","metal ion binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS07T0550900-01",0.0110708643940689,0.14362507387158902,-0.8250991163352791,"OS07G0550900",null,118.233454653434,96.6014516599636,55.6151888045771,65.6469610006005,"no","OS07G0550900","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q7EZ33]","Similar to Receptor-like protein kinase 6. (Os07t0550900-01)",7,21863109,21868527,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0630400-01",0.011093877390315001,0.143862539061504,-1.03988928109035,"OS07G0630400",null,1250.62455913589,891.400008113455,440.042985102882,601.762361066543,"no","OS07G0630400","Os07g0630400 protein [Source:UniProtKB/TrEMBL;Acc:Q8H4E4]","Ribonuclease T2 family protein. (Os07t0630400-01)",7,26141469,26142921,"GO:0090502;GO:0033897;GO:0003723","RNA phosphodiester bond hydrolysis, endonucleolytic;ribonuclease T2 activity;RNA binding","The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. [EC:3.1.27.1];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS03T0283800-01",0.011105093838617899,0.143946893066378,0.274223534892832,"OS03G0283800",null,1241.45127386106,1232.02535024838,1583.40144647132,1407.88029361993,"no","OS03G0283800","Os03g0283800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VW65]","Similar to TBC domain containing protein, expressed. (Os03t0283800-01)",3,9744220,9751248]
["OS03T0556600-01",0.0111247217208386,0.14414016031173,-0.767582782930461,"OS03G0556600",null,290.487367036454,269.684529013539,136.598709344575,192.44672910732,"no","OS03G0556600","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q7Y1P1]","Serine/threonine protein kinase-related domain containing protein. (Os03t0556600-01)",3,19726886,19731136,"GO:0006468;GO:0004674;GO:0005886;GO:0030246;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;carbohydrate binding;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0609200-01",0.0111317894201576,0.144170593626391,0.80326563363207,"OS12G0609200",null,74.5693511290443,55.5838342241646,117.084608009636,110.038776704622,"no","OS12G0609200","Os12g0609200 protein [Source:UniProtKB/TrEMBL;Acc:Q0IM04]","Conserved hypothetical protein. (Os12t0609200-01)",12,25727713,25729355,"GO:2000022;GO:1903507;GO:0031347;GO:0009611;GO:0003714;GO:0005634","regulation of jasmonic acid mediated signaling pathway;negative regulation of nucleic acid-templated transcription;regulation of defense response;response to wounding;transcription corepressor activity;nucleus","Any process that modulates the frequency, rate or extent of jasmonic acid mediated signaling pathway. [GOC:obol];Any process that stops, prevents or reduces the frequency, rate or extent of nucleic acid-templated transcription. [GO_REF:0000058, GOC:pr, GOC:TermGenie, GOC:txnOH, GOC:vw];Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS07T0176200-02",0.0111574156531637,0.144383875282556,0.26637682131852,"OS07G0176200",null,1027.39668051421,1087.21039949512,1307.24054023357,1236.17368129086,"no","OS07G0176200","Os07g0176200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZEZ8]","Tesmin/TSO1-like, CXC domain containing protein. (Os07t0176200-01);Similar to Transcription factor CPP. (Os07t0176200-02)",7,4020306,4027426]
["OS10T0522900-02",0.0111577091366233,0.144383875282556,-0.6467653033421811,"OS10G0522900",null,485.432068599749,519.055724059621,278.549813774114,363.027363944261,"no","OS10G0522900","Os10g0522900 protein [Source:UniProtKB/TrEMBL;Acc:Q9AUY4]","Isopenicillin N synthase family protein. (Os10t0522900-01);Similar to Oxidoreductase, 2OG-Fe oxygenase family protein, expressed. (Os10t0522900-02)",10,20281431,20285006,"GO:0016491;GO:0055114;GO:0046872","oxidoreductase activity;oxidation-reduction process;metal ion binding","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0574500-01",0.0111689572348422,0.144407101751544,0.30858329941807,"OS01G0574500","FTSH5",769.901735683197,729.670154846871,929.808836023585,927.397344478326,"no","OS01G0574500","ATP-dependent zinc metalloprotease FTSH 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LQJ8]","ATPase, AAA-type, core domain containing protein. (Os01t0574500-01);Similar to Cell division protease ftsH homolog 5, mitochondrial. (Os01t0574500-02)",1,22082298,22088239,"GO:0004222;GO:0006508;GO:0005524;GO:0008237;GO:0004176;GO:0009941;GO:0005739;GO:0046872;GO:0016787;GO:0008233;GO:0000166;GO:0016020","metalloendopeptidase activity;proteolysis;ATP binding;metallopeptidase activity;ATP-dependent peptidase activity;chloroplast envelope;mitochondrion;metal ion binding;hydrolase activity;peptidase activity;nucleotide binding;membrane","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds. [GOC:mah];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0530500-02",0.011168660987788499,0.144407101751544,0.34456820130231103,"OS05G0530500","OSK1",733.508501055186,772.675437981647,900.834866358906,1011.67364413,"no","OS05G0530500","Serine/threonine protein kinase OSK1 [Source:UniProtKB/Swiss-Prot;Acc:Q852Q2]","Similar to OSK1. (Os05t0530500-01);Serine/threonine protein kinase, Sugar signaling (Os05t0530500-02);Similar to OSK1. (Os05t0530500-03)",5,26347148,26351609,"GO:0006468;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0016740;GO:0004672;GO:0043066;GO:0035556;GO:0005634;GO:0005737","protein phosphorylation;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;transferase activity;protein kinase activity;negative regulation of apoptotic process;intracellular signal transduction;nucleus;cytoplasm","The process of introducing a phosphate group on to a protein. [GOC:hb];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. [GOC:jl, GOC:mtg_apoptosis];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS01T0679000-02",0.0113239465108903,0.145426319378193,0.30942605950858104,"OS01G0679000",null,637.939641391141,625.832800153557,816.812984085277,749.272290483829,"no","OS01G0679000","Os01g0679000 protein [Source:UniProtKB/TrEMBL;Acc:Q5QM91]","RNA polymerase III Rpc82, C -terminal domain containing protein. (Os01t0679000-01);Hypothetical conserved gene. (Os01t0679000-02)",1,27938801,27947024,"GO:0003899;GO:0006351;GO:0003677;GO:0005666;GO:0006383;GO:0001056","DNA-directed 5'-3' RNA polymerase activity;transcription, DNA-templated;DNA binding;DNA-directed RNA polymerase III complex;transcription from RNA polymerase III promoter;RNA polymerase III activity","Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH]"]
["OS04T0500700-02",0.011391479589369799,0.14560978288664,-0.24859058802403902,"OS04G0500700","HCT1",9075.11815640228,8415.92001283135,7179.40807924354,7543.119070613,"no","OS04G0500700","Hydroxycinnamoyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0JBZ8]","Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3. (Os04t0500700-01);Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3. (Os04t0500700-02)",4,24993910,24999530,"GO:0016746;GO:0016747;GO:0016740","transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0118400-01",0.011528525579672001,0.146497524605921,-0.45848375065598,"OS12G0118400",null,385.548146107633,401.699694160463,259.893257398192,313.0269182467,"no","OS12G0118400","Hydrolase, alpha/beta fold family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QYI3]","Similar to Inwardly rectifying potassium channel subunit. (Os12t0118400-01);Similar to Catalytic/ hydrolase. (Os12t0118400-02)",12,891782,898384,"GO:0005249;GO:0042391;GO:0005887;GO:0071805;GO:0006813;GO:0016020;GO:0016021;GO:0016787;GO:0003824","voltage-gated potassium channel activity;regulation of membrane potential;integral component of plasma membrane;potassium ion transmembrane transport;potassium ion transport;membrane;integral component of membrane;hydrolase activity;catalytic activity","Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, ISBN:0815340729];Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. [GOC:jl, GOC:mtg_cardio, GOC:tb, ISBN:0198506732];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS03T0281900-01",0.0117895177735243,0.147862621928043,-1.24127387420307,"OS03G0281900","RCN1",503.847899528456,497.185288641354,151.085387233152,272.350640928475,"no","OS03G0281900","ABC transporter G family member 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H8V7]","ATP-binding cassette (ABC) transporter, Hypodermal suberization of roots, Salt stress tolerance (Os03t0281900-01)",3,9654333,9657024,"GO:0009739;GO:0009737;GO:0042626;GO:0009408;GO:0016021;GO:0005886;GO:0055085;GO:0007275;GO:0006810;GO:0016887;GO:0005524;GO:0000166;GO:0009753;GO:0009733;GO:1901002;GO:0016020;GO:0009751;GO:0010345;GO:0055075;GO:0055078;GO:0071456;GO:0071470;GO:0071472;GO:1902074;GO:2000032;GO:0048225;GO:0048226","response to gibberellin;response to abscisic acid;ATPase activity, coupled to transmembrane movement of substances;response to heat;integral component of membrane;plasma membrane;transmembrane transport;multicellular organism development;transport;ATPase activity;ATP binding;nucleotide binding;response to jasmonic acid;response to auxin;positive regulation of response to salt stress;membrane;response to salicylic acid;suberin biosynthetic process;potassium ion homeostasis;sodium ion homeostasis;cellular response to hypoxia;cellular response to osmotic stress;cellular response to salt stress;response to salt;regulation of secondary shoot formation;suberin network;Casparian strip","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];Any process that activates or increases the frequency, rate or extent of response to salt stress. [GOC:TermGenie, PMID:22627139];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl];The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262];Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell. [GOC:jid, GOC:mah];Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus. [GOC:mls, GOC:TermGenie, PMID:16666921];Any process that modulates the frequency, rate or extent of secondary shoot formation. [GOC:obol];An extracellular matrix part that consists of fatty acid-derived polymers, including both aromatic and aliphatic components. The suberin network is found in specialized plant cell walls, where it is laid down between the primary wall and plasma membrane, forms protective and wound-healing layers, and provides a water-impermeable diffusion barrier. [GOC:jid, GOC:mah, PMID:18440267, PMID:7706282];Region of plant cell wall specialised to act as a seal to prevent back leakage of secreted material (analogous to tight junction between epithelial cells). Found particularly where root parenchymal cells secrete solutes into xylem vessels. The barrier is composed of suberin; a fatty substance, containing long chain fatty acids and fatty esters, also found in the cell walls of cork cells (phellem) in higher plants. [GOC:jid]"]
["OS04T0655300-01",0.0120102512225622,0.149254430641236,1.3068090700767199,"OS04G0655300",null,96.8291223454846,58.671825014396,160.015630946503,224.68399845017,"no","OS04G0655300","OSJNBb0022F16.11 protein [Source:UniProtKB/TrEMBL;Acc:Q7XTD4]","Protein kinase, core domain containing protein. (Os04t0655300-01)",4,33418637,33421199,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0446500-02",0.0120685133171627,0.149408961422408,0.24241961186575,"OS04G0446500",null,1914.15886068232,2046.30856365999,2432.43273140019,2252.7013062004,"no","OS04G0446500","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:Q7XUX5]","Similar to OSIGBa0140O07.15 protein. (Os04t0446500-01);Similar to FK506-binding protein 2 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (FKBP-13) (FKBP-15). (Os04t0446500-02)",4,22258294,22262579,"GO:0003755;GO:0000413;GO:0016853;GO:0005730;GO:0042393;GO:0006334;GO:0005634;GO:0005829;GO:0005528;GO:0000412;GO:0018208;","peptidyl-prolyl cis-trans isomerase activity;protein peptidyl-prolyl isomerization;isomerase activity;nucleolus;histone binding;nucleosome assembly;nucleus;cytosol;FK506 binding;histone peptidyl-prolyl isomerization;peptidyl-proline modification;","Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). [EC:5.2.1.8];The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506. [GOC:jl];The modification of a histone by cis-trans isomerization of a proline residue. [GOC:krc];The modification of peptidyl-proline. [GOC:go_curators];"]
["OS05T0119300-03",0.0122544361836718,0.15033196133575802,-1.6566548736526299,"OS05G0119300",null,66.9177234697087,67.4997354706842,27.3871197447656,15.2465652183598,"no","OS05G0119300","Os05g0119300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WHG7]","Similar to ESTs AA754121. (Os05t0119300-01);Similar to ESTs AA754121. (Os05t0119300-02);Similar to ESTs AA754121. (Os05t0119300-03)",5,1000593,1002757,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0588800-01",0.0124859177973373,0.15191945859986,0.38007296294872,"OS12G0588800","CYCD5-2",302.718414069568,322.180372447473,411.74753816722,401.500536360956,"no","OS12G0588800","Cyclin-D5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q2QMW1]","Cyclin D domain containing protein. (Os12t0588800-01)",12,24619889,24622059,"GO:0051301;GO:0007049;GO:0005634","cell division;cell cycle;nucleus","The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0760300-01",0.0127082100047432,0.153168563365081,0.227374418302196,"OS02G0760300",null,7241.79909752283,7228.98643993163,8221.29089240994,8719.69291376617,"no","OS02G0760300","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:Q6K8D4]","Similar to Immunophilin. (Os02t0760300-01)",2,32017761,32019838,"GO:0061077;GO:0005528;GO:0003755;GO:0005737;GO:0000413;GO:0016853;GO:0005829","chaperone-mediated protein folding;FK506 binding;peptidyl-prolyl cis-trans isomerase activity;cytoplasm;protein peptidyl-prolyl isomerization;isomerase activity;cytosol","The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506. [GOC:jl];Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). [EC:5.2.1.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS03T0764800-01",0.0129118412465326,0.15424740198539802,-0.48732450518503606,"OS03G0764800",null,896.480151858913,1021.14240904242,678.55852369221,689.371358881205,"no","OS03G0764800",null,"Serine/threonine protein kinase, Abscisic acid (ABA)-activated protein kinase, Hyperosmotic stress response, ABA signal transduction (Os03t0764800-01)",3,31654824,31658145,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0112700-01",0.0130953749186938,0.154946070821041,-0.534275871768492,"OS07G0112700",null,2516.53792706317,2802.86630726667,1628.45175640069,2044.62438589655,"no","OS07G0112700","Blue copper-binding protein-like [Source:UniProtKB/TrEMBL;Acc:Q7F1H3]","Cupredoxin domain containing protein. (Os07t0112700-01)",7,699881,700826,"GO:0046658;GO:0009055;GO:0016020;GO:0016021","anchored component of plasma membrane;electron carrier activity;membrane;integral component of membrane","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0509400-02",0.0130882774504007,0.154946070821041,-1.02644725815702,"OS08G0509400","BGLU28",96.445906913347,145.770845715831,59.4224445979022,59.4860178901295,"no","OS08G0509400","Beta-glucosidase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q7EXZ4]","Similar to Amygdalin hydrolase isoform AH I precursor (EC 3.2.1.117). (Os08t0509400-01);Non-protein coding transcript. (Os08t0509400-02)",8,25260150,25266935,"GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787","glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0640800-02",0.0132984006592739,0.155728858508171,0.44758304251622905,"OS03G0640800","HOX32",497.993592414602,593.499656184023,701.05849021946,787.469395701152,"no","OS03G0640800","Homeobox-leucine zipper protein HOX32 [Source:UniProtKB/Swiss-Prot;Acc:Q6AST1]","Class III homeodomain Leu zipper (HD-Zip III) family member, Control of plant type architecture and leaf development (Os03t0640800-01);Similar to cDNA clone:J033124M18, full insert sequence. (Os03t0640800-02);Similar to cDNA clone:J033124M18, full insert sequence. (Os03t0640800-03)",3,24651848,24657650,"GO:0008289;GO:0003677;GO:0005634;GO:0006355;GO:0006351","lipid binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a lipid. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0308800-02",0.013459833872973899,0.15659466600354902,0.858101186278401,"OS03G0308800",null,93.3559327069492,99.4093271547075,205.43749075434,143.97865144615,"no","OS03G0308800","Os03g0308800 protein [Source:UniProtKB/TrEMBL;Acc:Q10MH4]","Tetratricopeptide-like helical domain containing protein. (Os03t0308800-01);Hypothetical conserved gene. (Os03t0308800-02);Hypothetical conserved gene. (Os03t0308800-03)",3,10992850,10997554,"GO:0006396;GO:0003727;GO:0043621;GO:0006397;GO:0006417;GO:0009657;GO:0010114;GO:1901918;GO:0005774;GO:0009507;GO:0009570;GO:0009941;GO:0031969","RNA processing;single-stranded RNA binding;protein self-association;mRNA processing;regulation of translation;plastid organization;response to red light;negative regulation of exoribonuclease activity;vacuolar membrane;chloroplast;chloroplast stroma;chloroplast envelope;chloroplast membrane","Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];Interacting selectively and non-covalently with single-stranded RNA. [GOC:jl];Interacting selectively and non-covalently with a domain within the same polypeptide. [GOC:jl];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm];Any process that stops, prevents or reduces the frequency, rate or extent of exoribonuclease activity. [GOC:TermGenie, PMID:22570495];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz]"]
["OS07T0650600-04",0.0137022947363924,0.157795894755469,-0.23869920769260702,"OS07G0650600",null,1495.13636566052,1408.39314039995,1234.90443875622,1225.86328775326,"no","OS07G0650600","BLE2 protein [Source:UniProtKB/TrEMBL;Acc:Q8H493]","Similar to BLE2 protein. (Os07t0650600-02);Hypothetical conserved gene. (Os07t0650600-03);BLE2 protein. (Os07t0650600-04)",7,27197715,27201395,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS10T0567600-01",0.0138657624682781,0.15850532817596802,-0.9822492801215721,"OS10G0567600",null,59.1167273267169,56.6131644875751,26.3440368021681,32.2372693428505,"no","OS10G0567600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7XC01]","Uncharacterised protein family UPF0503 domain containing protein. (Os10t0567600-01)",10,22497930,22499180]
["OS10T0503700-03",0.014054082215568002,0.15908866982216902,-0.361447675232454,"OS10G0503700",null,626.337065244566,666.946687034991,490.449967376304,516.220271594222,"no","OS10G0503700","DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q109G2]","Similar to ATP-dependent RNA helicase dhh1. (Os10t0503700-01);Similar to ATP-dependent RNA helicase dhh1. (Os10t0503700-02);Similar to ATP-dependent RNA helicase dhh1. (Os10t0503700-03)",10,19236368,19241922,"GO:0003676;GO:0005524;GO:0005730;GO:0006417;GO:0000932;GO:0006397;GO:0010501;GO:0004004;GO:0051028;GO:0003723;GO:0004386;GO:0005737;GO:0006810;GO:0016787;GO:0000166;GO:0010494;GO:0033962","nucleic acid binding;ATP binding;nucleolus;regulation of translation;P-body;mRNA processing;RNA secondary structure unwinding;ATP-dependent RNA helicase activity;mRNA transport;RNA binding;helicase activity;cytoplasm;transport;hydrolase activity;nucleotide binding;cytoplasmic stress granule;cytoplasmic mRNA processing body assembly","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. [GOC:clt, PMID:12730603];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];The process in which a secondary structure of RNA are broken or 'melted'. [PMID:17169986];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress. [GOC:ans, PMID:17284590, PMID:17601829, PMID:17967451, PMID:20368989];The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. [GOC:mah, PMID:17429074]"]
["OS02T0189200-01",0.0141235803899353,0.15957974410995,-1.2110423639785,"OS02G0189200",null,42.8086646158985,60.7304855412169,18.5383962681924,26.1860032599879,"no","OS02G0189200","Os02g0189200 protein [Source:UniProtKB/TrEMBL;Acc:Q6YUV2]","Lipase, GDSL domain containing protein. (Os02t0189200-01)",2,4942762,4944255,"GO:0016788","hydrolase activity, acting on ester bonds","Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS06T0195900-01",0.0144278323487437,0.16152405053822502,0.48022078789924705,"OS06G0195900",null,1154.71903468123,995.556487811476,1629.8470542889,1369.69512195701,"no","OS06G0195900","Os06g0195900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DDV9]","NOG, C-terminal domain containing protein. (Os06t0195900-01);Similar to predicted protein. (Os06t0195900-02)",6,4870881,4872191,"GO:0005730","nucleolus","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732]"]
["OS03T0844500-02",0.014657473966461599,0.162841870772122,-0.9765907333547511,"OS03G0844500",null,79.7237205440451,86.0306794464838,41.0060111309706,43.22692930091,"no","OS03G0844500","Os03g0844500 protein [Source:UniProtKB/TrEMBL;Acc:Q75LC7]","Similar to Protein phosphatase 2A B' regulatory subunit. (Os03t0844500-01);Hypothetical gene. (Os03t0844500-02)",3,35498877,35504493,"GO:0000159;GO:0019888;GO:0050790;GO:0007165","protein phosphatase type 2A complex;protein phosphatase regulator activity;regulation of catalytic activity;signal transduction","A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. [GOC:mah, ISBN:0198547684, PMID:17245430];Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. [GOC:ai];Any process that modulates the activity of an enzyme. [GOC:ai, GOC:ebc, GOC:vw];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]"]
["OS04T0183300-01",0.0148730736486947,0.163792240817516,-0.557557825808035,"OS04G0183300",null,203.465274365566,210.705446926351,157.138494115799,124.270364342586,"no","OS04G0183300","Os04g0183300 protein [Source:UniProtKB/TrEMBL;Acc:A3ARH1]","Similar to OSIGBa0140C02.5 protein. (Os04t0183300-01)",4,5669157,5675737]
["OS02T0550000-01",0.0150723631907789,0.164696294779927,0.23851290136938602,"OS02G0550000",null,988.67630184337,1047.85820815184,1208.89857769949,1193.75585263525,"no","OS02G0550000","Os02g0550000 protein [Source:UniProtKB/TrEMBL;Acc:Q0E0I3]","Conserved hypothetical protein. (Os02t0550000-01)",2,20676454,20682186]
["OS04T0254300-01",0.015334304513822299,0.165668478549643,0.8934215870911981,"OS04G0254300",null,45.7404688496964,52.9542244988193,75.7031263758185,107.629811712059,"no","OS04G0254300","Os04g0254300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7Y2]","Conserved hypothetical protein. (Os04t0254300-01)",4,10068617,10075564]
["OS07T0176500-01",0.0153224809526794,0.165668478549643,-0.70314046093201,"OS07G0176500",null,1115.72876228903,1066.80378565498,554.546619444873,786.038391113323,"no","OS07G0176500","Extensin-like protein [Source:UniProtKB/TrEMBL;Acc:Q6ZEZ7]","Leucine-rich repeat, plant specific containing protein. (Os07t0176500-01)",7,4029361,4030853,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0200700-01",0.0155187194935571,0.16653597399619102,1.89430465380098,"OS06G0200700",null,8.77359162896807,8.86032735354693,30.2354256521093,35.3173918757649,"no","OS06G0200700","Os06g0200700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DDT7]","Hypothetical protein. (Os06t0200700-01)",6,5090599,5093127]
["OS12T0227500-00",0.0157330537414287,0.16745365079086302,-0.790059703519141,"OS12G0227500",null,371.960813041909,519.743114369967,234.904429711025,280.785927054887,"no","OS12G0227500","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:Q2QVJ4]","Similar to Beta-glucosidase aggregating factor. (Os12t0227500-00)",12,6945206,6948234,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0578800-01",0.0160753719772392,0.169047900553137,-0.22158352695935601,"OS02G0578800",null,1988.56439680043,2039.10325181611,1653.82008813611,1800.40264845071,"no","OS02G0578800","Os02g0578800 protein [Source:UniProtKB/TrEMBL;Acc:Q6EP55]","Protein of unknown function DUF962 family protein. (Os02t0578800-01)",2,22245005,22247538,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0622300-04",0.0162410960000106,0.170070601512257,-0.310507427159598,"OS06G0622300",null,788.015067037274,786.895936283071,674.823149532808,595.119087994428,"no","OS06G0622300","DNA-binding protein-like [Source:UniProtKB/TrEMBL;Acc:Q69XV5]","AT-rich interaction domain-containing protein, Shoot apical meristem (SAM) development (Os06t0622300-01);Hypothetical conserved gene. (Os06t0622300-02);Similar to DNA-binding protein. (Os06t0622300-03);Similar to DNA-binding protein. (Os06t0622300-04)",6,25013593,25019776,"GO:0005634;GO:0003677;GO:0045944;GO:0001228;GO:0006366;GO:0000977","nucleus;DNA binding;positive regulation of transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;transcription from RNA polymerase II promoter;RNA polymerase II regulatory region sequence-specific DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH]"]
["OS01T0871200-02",0.016296521501852002,0.17038402087374901,0.23640117578815903,"OS01G0871200",null,3916.1873083824,3512.73017772903,4351.89540564449,4399.74328344864,"no","OS01G0871200","Zinc finger protein STOP1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q943I6]","Zinc finger, C2H2-type domain containing protein. (Os01t0871200-01);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-02);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-03);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-04)",1,37773994,37778565,"GO:0005634;GO:0046872;GO:0006355;GO:0006351;GO:0003676;GO:0003700;GO:0010044;GO:0010447","nucleus;metal ion binding;regulation of transcription, DNA-templated;transcription, DNA-templated;nucleic acid binding;transcription factor activity, sequence-specific DNA binding;response to aluminum ion;response to acidic pH","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution. [GOC:go_curators, GOC:tb, http://en.wikipedia.org/wiki/PH]"]
["OS12T0108100-01",0.0164924790306803,0.17140342876609602,-0.41067857545107306,"OS12G0108100",null,1062.56877034263,1286.29789772783,856.743408000785,910.23724856699,"no","OS12G0108100","Os12g0108100 protein [Source:UniProtKB/TrEMBL;Acc:Q2QYS2]","Similar to Ser Thr specific protein kinase-like protein. (Os12t0108100-01)",12,439128,443649,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0453500-01",0.0168237391222591,0.173180214846112,-0.37754675062799503,"OS05G0453500",null,949.944652905176,1141.5272621222,813.73802566697,796.162864073429,"no","OS05G0453500","Os05g0453500 protein [Source:UniProtKB/TrEMBL;Acc:Q6I642]","Guanylyl cyclase domain containing protein. (Os05t0453500-01)",5,22263224,22266786]
["OS01T0120700-01",0.0171047379000165,0.174463111812653,-0.277886399478084,"OS01G0120700",null,1626.72925540414,1629.42980697875,1437.21356331828,1248.46152182312,"no","OS01G0120700","Os01g0120700 protein [Source:UniProtKB/TrEMBL;Acc:Q9LGP3]","Similar to sarcoplasmic reticulum histidine-rich calcium-binding protein. (Os01t0120700-01)",1,1168737,1171126]
["OS04T0308500-01",0.0173232606755818,0.17536787944346402,-0.49007404074749,"OS04G0308500",null,556.003013046967,674.725987665554,405.405455233365,470.859509795574,"no","OS04G0308500","OSJNBa0024J22.15 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXL5]","Similar to H0211A12.12 protein. (Os04t0308500-01)",4,13937943,13939128]
["OS01T0239100-01",0.0176052885670299,0.17658462780692602,0.26460203941812505,"OS01G0239100",null,712.291363274154,738.556358344115,906.396497748138,836.513587129304,"no","OS01G0239100","Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q9FTT4]","Heat shock protein DnaJ family protein. (Os01t0239100-01);Heat shock protein DnaJ family protein. (Os01t0239100-02)",1,7712339,7721253,"GO:0006457;GO:0051082","protein folding;unfolded protein binding","The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai]"]
["OS07T0656800-01",0.0175844799795374,0.17658462780692602,-0.26624909644564504,"OS07G0656800",null,828.653436493463,890.370677850044,685.920661923118,743.410968785128,"no","OS07G0656800","Os07g0656800 protein [Source:UniProtKB/TrEMBL;Acc:Q0D402]","Similar to catalytic/ methyltransferase. (Os07t0656800-01)",7,27635604,27638590,"GO:0008757;GO:0032259;GO:0008168;GO:0008152","S-adenosylmethionine-dependent methyltransferase activity;methylation;methyltransferase activity;metabolic process","Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS12T0132400-01",0.0178820271649436,0.17824851352148602,0.349737868071238,"OS12G0132400",null,369.768091347133,411.071492548434,493.975206941475,501.071370527962,"no","OS12G0132400","Glutamate-rich WD repeat-containing protein 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q0IQB5]","Similar to Grwd-pending-prov protein. (Os12t0132400-01)",12,1562209,1563743]
["OS03T0737000-03",0.0181675113455804,0.179563654556659,0.244490078771905,"OS03G0737000",null,985.211733010581,1030.79329132529,1201.66157578693,1186.64710672926,"no","OS03G0737000","Os03g0737000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KI05]","Cystathionine beta-synthase, core domain containing protein. (Os03t0737000-01);Hypothetical gene. (Os03t0737000-02);Similar to CBS domain containing protein, expressed. (Os03t0737000-03)",3,30206423,30210436,"GO:0050897;GO:0009651;GO:0045454;GO:0005739;GO:0016020;GO:0016021;","cobalt ion binding;response to salt stress;cell redox homeostasis;mitochondrion;membrane;integral component of membrane;","Interacting selectively and non-covalently with a cobalt (Co) ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS01T0966000-02",0.0183597076355639,0.18030401404106303,0.514580087751611,"OS01G0966000",null,165.425579505986,192.420749579277,249.61197815321,261.599513657923,"no","OS01G0966000","5-oxoprolinase [Source:Projected from Arabidopsis thaliana (AT5G37830) UniProtKB/Swiss-Prot;Acc:Q9FIZ7]","Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-01);Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-02);Similar to predicted protein. (Os01t0966000-03);Similar to OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase. (Os01t0966000-04)",1,42590881,42598002,"GO:0003824;GO:0005829;GO:0006749;GO:0017168;GO:0016787;GO:0006751;GO:0009506","catalytic activity;cytosol;glutathione metabolic process;5-oxoprolinase (ATP-hydrolyzing) activity;hydrolase activity;glutathione catabolic process;plasmodesma","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];Catalysis of the reaction: 5-oxo-L-proline + ATP + 2 H(2)O = L-glutamate + ADP + 2 H(+) + phosphate. [EC:3.5.2.9, RHEA:10351];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, ISBN:0198506732];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS05T0550700-00",0.0185876608993619,0.18108744126189602,0.421293447396192,"OS05G0550700",null,246.53373730343,209.057001570101,296.181070998853,313.913066664324,"no","OS05G0550700","Os05g0550700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQI5]","Protein kinase, catalytic domain domain containing protein. (Os05t0550700-00)",5,27346433,27356977,"GO:0030247;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0966300-01",0.0187615943847418,0.18182691534633,0.258058643570032,"OS01G0966300",null,694.111919129211,689.651276485005,845.93629286962,808.862394420613,"no","OS01G0966300","Os01g0966300 protein [Source:UniProtKB/TrEMBL;Acc:Q5JJV3]","Similar to Mitochondrial processing peptidase. (Os01t0966300-01)",1,42614814,42618231,"GO:0006627;GO:0004222;GO:0005743;GO:0008270;GO:0046872;GO:0003824","protein processing involved in protein targeting to mitochondrion;metalloendopeptidase activity;mitochondrial inner membrane;zinc ion binding;metal ion binding;catalytic activity","The cleavage of peptide bonds in proteins, usually near the N terminus, contributing to the process of import into the mitochondrion. Several different peptidases mediate cleavage of proteins destined for different mitochondrial compartments. [GOC:mcc, PMID:12191769];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0620600-01",0.0188372013226678,0.18208242353654402,0.613694808911564,"OS02G0620600","AMT1-2",1061.21347150838,861.066746421511,1298.8974666326,1642.52389661852,"no","OS02G0620600","Ammonium transporter 1 member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6K9G1]","Ammonium transporter, Ammonium uptake (Os02t0620600-01)",2,24690884,24692736,"GO:0005887;GO:0072488;GO:0015696;GO:0008519;GO:0006810;GO:0016020;GO:0016021;GO:0015695","integral component of plasma membrane;ammonium transmembrane transport;ammonium transport;ammonium transmembrane transporter activity;transport;membrane;integral component of membrane;organic cation transport","The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+. [GOC:mah];The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [ISBN:0198506732];Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [GOC:go_curators, ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage. [GOC:ai]"]
["OS03T0787300-01",0.0191742624919735,0.18387070547858603,0.206631035209587,"OS03G0787300",null,3372.60682324161,3415.93527792451,3780.50197233347,4053.40942643756,"no","OS03G0787300","DnaJ protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q6F3B0]","Similar to DnaJ homolog. (Os03t0787300-01)",3,32708413,32711325,"GO:0009408;GO:0031072;GO:0006457;GO:0051082;GO:0046872;GO:0005524","response to heat;heat shock protein binding;protein folding;unfolded protein binding;metal ion binding;ATP binding","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. [GOC:mah, GOC:vw];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0688200-01",0.0194089780594769,0.18490274327194803,0.22014729483171502,"OS03G0688200",null,1157.87245246811,1116.82333580034,1309.39619957443,1340.28889510275,"no","OS03G0688200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6AVI7]","Conserved hypothetical protein. (Os03t0688200-01)",3,27458294,27463536]
["OS01T0514000-01",0.0197616162787063,0.186786845014932,0.229342034833411,"OS01G0514000",null,1480.87883823751,1344.60556443411,1699.89971958836,1612.41615487585,"no","OS01G0514000","60S ribosomal protein L30-like protein [Source:UniProtKB/TrEMBL;Acc:Q5QMX1]","Similar to 50S ribosomal protein L24e. (Os01t0514000-01);Non-protein coding transcript. (Os01t0514000-02)",1,18158654,18163519,"GO:0000027;GO:0006412;GO:0003735;GO:0022625;GO:0003723;GO:0005840;GO:1902626","ribosomal large subunit assembly;translation;structural constituent of ribosome;cytosolic large ribosomal subunit;RNA binding;ribosome;assembly of large subunit precursor of preribosome","The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. [GOC:jl];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The aggregation, arrangement and bonding together of a set of components to form the large subunit precursor of the preribosome. [GO_REF:0000079, GOC:di, GOC:TermGenie, PMID:22735702]"]
["OS06T0287700-01",0.020061033974825,0.18818075222562303,0.42197326684182,"OS06G0287700",null,204.020667137042,194.858920605089,282.001224501316,252.401203922957,"no","OS06G0287700","Os06g0287700 protein [Source:UniProtKB/TrEMBL;Acc:C7J3D2]","Similar to NBS-LRR disease resistance protein homologue (Fragment). (Os06t0287700-01);Non-protein coding transcript. (Os06t0287700-02);Similar to Nbs-lrr disease resistance protein (Fragment). (Os06t0287700-03)",6,10445137,10451095,"GO:0016020;GO:0016021;;GO:0043531","membrane;integral component of membrane;;ADP binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];;Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS09T0542900-01",0.0202084632493723,0.1883027653777,-1.06846325803985,"OS09G0542900",null,53.00120381016,45.2905315900601,18.5383962681924,28.3297215437171,"no","OS09G0542900","Os09g0542900 protein [Source:UniProtKB/TrEMBL;Acc:Q7XJ08]","Conserved hypothetical protein. (Os09t0542900-01)",9,21386018,21387018]
["OS01T0885200-02",0.0202798923834844,0.18861105939654702,-0.252289442885207,"OS01G0885200",null,1056.94054891833,1093.48164581223,850.778546639535,954.636442938283,"no","OS01G0885200","Os01g0885200 protein [Source:UniProtKB/TrEMBL;Acc:Q8S0R7]","Uncharacterised conserved protein UCP031277 domain containing protein. (Os01t0885200-01);Hypothetical conserved gene. (Os01t0885200-02)",1,38448148,38450486,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0467000-01",0.0205374006895202,0.189679161386403,-0.48408986688118905,"OS04G0467000",null,199.773768207526,189.396768467524,145.380054945298,132.856625170535,"no","OS04G0467000","OSJNBa0016O02.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XJW5]","Conserved hypothetical protein. (Os04t0467000-01)",4,23329903,23331046]
["OS04T0455600-02",0.0207521216420164,0.19034931758831403,-0.280114379937891,"OS04G0455600",null,866.8197594734,943.420110669341,714.683463386549,776.095635932712,"no","OS04G0455600","OSJNBa0006M15.14 protein [Source:UniProtKB/TrEMBL;Acc:Q7XRF3]","Similar to H0523F07.2 protein. (Os04t0455600-02)",4,22795172,22798775]
["OS11T0323860-01",0.0210213583895872,0.191429073477993,0.20240297385156203,"OS11G0323860",null,1309.74128646261,1233.65232069743,1449.89772918599,1476.56462459753,"no","OS11G0323860","Os11g0323860 protein [Source:UniProtKB/TrEMBL;Acc:B9GCL3]","Hypothetical conserved gene. (Os11t0323860-01)",11,12226617,12227793]
["OS01T0323000-02",0.0213461370661663,0.192755936705185,-0.25280734447124703,"OS01G0323000",null,1092.03924875684,1123.69605067888,871.682404561247,987.899377320322,"no","OS01G0323000","Os01g0323000 protein [Source:UniProtKB/TrEMBL;Acc:Q9AWQ0]","Similar to Ser Thr specific protein kinase-like protein. (Os01t0323000-01);Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1. (Os01t0323000-02)",1,12326546,12331707,"GO:0006468;GO:0005524;GO:0004672;GO:0007178;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;transmembrane receptor protein serine/threonine kinase signaling pathway;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0657100-02",0.0213101966869834,0.192755936705185,-0.63101768277939,"OS03G0657100",null,116.564541251512,150.170750032382,84.563294354905,87.6732208258427,"no","OS03G0657100","RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q10FT0]","Armadillo-like helical domain containing protein. (Os03t0657100-01);Similar to predicted protein. (Os03t0657100-02)",3,25639109,25642187,"GO:0016567;GO:0004842;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0567000-01",0.0216085616227734,0.194114899940892,0.201351012937472,"OS09G0567000",null,1461.61012045711,1439.00370824782,1646.01444760213,1689.03753617541,"no","OS09G0567000","Os09g0567000 protein [Source:UniProtKB/TrEMBL;Acc:Q652L9]","Domain of unknown function DUF1618 domain containing protein. (Os09t0567000-01)",9,22631110,22633487]
["OS03T0776900-01",0.021888750782648198,0.195140097435503,0.5197919632816881,"OS03G0776900",null,119.25270857286,122.490301345844,161.967041079997,184.631633509053,"no","OS03G0776900","Os03g0776900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W464]","Similar to mitochondrial import inner membrane translocase subunit TIM14. (Os03t0776900-01)",3,32208931,32210830]
["OS03T0650700-01",0.0221753838442838,0.19637748614798803,0.28198487292851304,"OS03G0650700",null,481.087849969145,510.547810651586,626.402652851553,579.293961221526,"no","OS03G0650700","Elongation factor Tu family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q53KX3]","Translation elongation factor EFG/EF2, C-terminal domain containing protein. (Os03t0650700-01)",3,25250967,25254279,"GO:0006414;GO:0003746;GO:0005525;GO:0003924","translational elongation;translation elongation factor activity;GTP binding;GTPase activity","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS06T0274300-01",0.022385759732813003,0.196746897820356,0.372160879706093,"OS06G0274300",null,1257.75933657187,1199.16975687318,1438.18926838503,1741.78943146371,"no","OS06G0274300","Os06g0274300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WV71]","Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1. (Os06t0274300-01)",6,9289326,9291317,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS09T0101100-01",0.0226057582323854,0.19750401362066702,0.343272214274905,"OS09G0101100",null,348.584840443745,326.297693501115,456.62997123758,399.54676246139,"no","OS09G0101100","Os09g0101100 protein [Source:UniProtKB/TrEMBL;Acc:Q0J3K2]","HhH-GPD domain domain containing protein. (Os09t0101100-01)",9,244493,248804,"GO:0003677;GO:0006284;GO:0006281;GO:0003824;GO:0009314","DNA binding;base-excision repair;DNA repair;catalytic activity;response to radiation","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. [ISBN:0815316194];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation. [GOC:jl, Wikipedia:Electromagnetic_radiation]"]
["OS08T0542000-01",0.0226895637242058,0.19798074463370802,0.511194498535618,"OS08G0542000",null,501.529508273447,404.472396607416,588.790677517001,702.47018646335,"no","OS08G0542000","Methionine aminopeptidase 2 [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJS0]","Similar to Methionine aminopeptidase. (Os08t0542000-01)",8,27123639,27127540,"GO:0070084;GO:0070006;GO:0008235;GO:0004177;GO:0005737;GO:0046872;GO:0006508;GO:0016787;GO:0008233","protein initiator methionine removal;metalloaminopeptidase activity;metalloexopeptidase activity;aminopeptidase activity;cytoplasm;metal ion binding;proteolysis;hydrolase activity;peptidase activity","The protein modification process in which the translation-initiating methionine or formylmethionine residue is removed from a protein. [GOC:imk, GOC:mah];Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#AMINOPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#EXOPEPTIDASE];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS02T0694100-01",0.0230854950447099,0.20014416702780302,-0.9474551489567241,"OS02G0694100",null,59.1167273267169,46.3198618534705,26.3440368021681,28.3297215437171,"no","OS02G0694100","Os02g0694100 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z891]","Cyclin-like F-box domain containing protein. (Os02t0694100-01)",2,28512035,28514171]
["OS03T0758600-01",0.0232806710860936,0.20053629072459,0.188026581977038,"OS03G0758600",null,2432.95910567023,2406.57415585365,2693.92168928838,2819.29573707474,"no","OS03G0758600","Os03g0758600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DNE0]","Protein of unknown function DUF863, plant family protein. (Os03t0758600-01)",3,31378126,31381399]
["OS04T0572700-01",0.023559730524114298,0.20140054144628403,0.5823177104249421,"OS04G0572700",null,108.040915459172,101.903696077635,179.529732281442,134.810399070102,"no","OS04G0572700","Os04g0572700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDQ5]","Similar to DNA-directed RNA polymerase. (Os04t0572700-01)",4,28849207,28852782,"GO:0005666;GO:0006383;GO:0001056;GO:0003899;GO:0046872;GO:0006351;GO:0003677","DNA-directed RNA polymerase III complex;transcription from RNA polymerase III promoter;RNA polymerase III activity;DNA-directed 5'-3' RNA polymerase activity;metal ion binding;transcription, DNA-templated;DNA binding","RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0269100-01",0.0237677373917859,0.20199528248491702,0.36168388196286905,"OS03G0269100",null,324.282821698286,289.633929832971,372.68299317173,416.153840607707,"no","OS03G0269100","Os03g0269100 protein [Source:UniProtKB/TrEMBL;Acc:Q84JJ3]","Short chain alcohol dehydrogenase-like. (Os03t0269100-01);Similar to tropinone reductase. (Os03t0269100-02)",3,8950027,8952082,"GO:0055114;GO:0016491","oxidation-reduction process;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS01T0831300-01",0.0239618912676071,0.202344859593127,3.65753846318247,"OS01G0831300",null,3.27647883046032,0,13.923146945662,27.4231056955248,"no","OS01G0831300","Os01g0831300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KE03]","Similar to Ammonium transporter. (Os01t0831300-01)",1,35587306,35588445,"GO:0072488;GO:0015696;GO:0008519;GO:0016020;GO:0016021","ammonium transmembrane transport;ammonium transport;ammonium transmembrane transporter activity;membrane;integral component of membrane","The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+. [GOC:mah];The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [ISBN:0198506732];Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [GOC:go_curators, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0510200-01",0.0239877808887683,0.20245802479912,0.22220679490844902,"OS02G0510200",null,848.01926096256,845.080146259984,1002.04910354913,972.979401984216,"no","OS02G0510200","Os02g0510200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJL5]","Acetolactate synthase (EC4.6.3.8), Acetohydroxy acid synthase, Herbicide resistance (mutated form of rice ALS, OsmALS (W548L/S627I)) (Os02t0510200-01)",2,18237840,18238191,"GO:0009082;GO:0003984;GO:0000287;GO:0030976;GO:0008652;GO:0050660;GO:0046872;GO:0009097;GO:0003824;GO:0016020;GO:0016021;GO:0016740;GO:0009099","branched-chain amino acid biosynthetic process;acetolactate synthase activity;magnesium ion binding;thiamine pyrophosphate binding;cellular amino acid biosynthetic process;flavin adenine dinucleotide binding;metal ion binding;isoleucine biosynthetic process;catalytic activity;membrane;integral component of membrane;transferase activity;valine biosynthetic process","The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [CHEBI:22918, GOC:ai];Catalysis of the reaction: 2 pyruvate = 2-acetolactate + CO2. [EC:2.2.1.6];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid. [GOC:ai]"]
["OS03T0668000-01",0.0242202977056179,0.203030961693237,0.908098885253639,"OS03G0668000",null,50.1856721500168,72.4025824170503,120.103571989308,109.941993015124,"no","OS03G0668000","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q7Y195]","Cyclin-like F-box domain containing protein. (Os03t0668000-01);Cyclin-like F-box domain containing protein. (Os03t0668000-02)",3,26317071,26319485,"GO:0031146;GO:0004842;GO:0016567;GO:0003676","SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;ubiquitin-protein transferase activity;protein ubiquitination;nucleic acid binding","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS01T0700000-02",0.0245662591543798,0.20444094310885202,-0.266071862731924,"OS01G0700000",null,1767.38629628495,1664.42703593471,1329.88600597612,1523.94364166202,"no","OS01G0700000","Os01g0700000 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8I8]","Conserved hypothetical protein. (Os01t0700000-01);Conserved hypothetical protein. (Os01t0700000-02)",1,28970632,28974459]
["OS05T0157200-01",0.0247262149333347,0.20477263798955503,-0.24869642700111402,"OS05G0157200",null,3452.21302509638,3718.97024170198,2841.25315436717,3194.42032579155,"no","OS05G0157200","Os05g0157200 protein [Source:UniProtKB/TrEMBL;Acc:Q75M01]","UspA domain containing protein. (Os05t0157200-01)",5,3345130,3347246,"GO:0006950","response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS12T0257000-03",0.0250305333576318,0.20590545372707802,-0.527688730527888,"OS12G0257000","CBP1",266.249120877272,226.559991013429,173.528073507171,168.316423417997,"no","OS12G0257000","Serine carboxypeptidase 1 [Source:UniProtKB/Swiss-Prot;Acc:P37890]","Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C). (Os12t0257000-01);Similar to Serine carboxypeptidase 1. (Os12t0257000-02);Similar to Serine carboxypeptidase 1. (Os12t0257000-03)",12,8829575,8834559,"GO:0005773;GO:0005777;GO:0019748;GO:0016747;GO:0004185;GO:0004180;GO:0006508;GO:0016787;GO:0008233","vacuole;peroxisome;secondary metabolic process;transferase activity, transferring acyl groups other than amino-acyl groups;serine-type carboxypeptidase activity;carboxypeptidase activity;proteolysis;hydrolase activity;peptidase activity","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. [GOC:go_curators];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0332533-01",0.025103777091999003,0.20608979874867803,-0.418217176908167,"OS03G0332533",null,512.834271153153,431.599427674705,325.885492293487,380.880362941728,"no","OS03G0332533","Os03g0332533 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VXV6]","Similar to Plant acid phosphatase family protein, expressed. (Os03t0332533-01)",3,12271456,12273755,"GO:0003993;GO:0016311;GO:0016020;GO:0016021","acid phosphatase activity;dephosphorylation;membrane;integral component of membrane","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0231100-01",0.025320783712081598,0.20693019185004202,0.7963274875585351,"OS12G0231100",null,36.6931410993416,44.2612013266496,66.3479445387937,74.2434081835345,"no","OS12G0231100","Os12g0231100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8E7]","Conserved hypothetical protein. (Os12t0231100-01)",12,7171810,7176574,"GO:0000123","histone acetyltransferase complex","A protein complex that possesses histone acetyltransferase activity. [GOC:mah]"]
["OS09T0469300-01",0.0255918634283743,0.20763626627544501,-1.69802282275699,"OS09G0469300",null,40.7701567770462,25.7332565852614,14.6355760012045,5.86132169870009,"no","OS09G0469300","Os09g0469300 protein [Source:UniProtKB/TrEMBL;Acc:Q6K4A7]","Cupredoxin domain containing protein. (Os09t0469300-01)",9,17843411,17844628,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS08T0519700-01",0.0258667246119221,0.20872014794766802,0.437085392924193,"OS08G0519700",null,157.286041881662,173.932856896608,226.738791197302,221.687350828733,"no","OS08G0519700","Os08g0519700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQ56]","Protein of unknown function DUF630 domain containing protein. (Os08t0519700-01);Hypothetical conserved gene. (Os08t0519700-02)",8,25829944,25834691,"GO:0003723;","RNA binding;","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];"]
["OS03T0358000-00",0.0262732126297541,0.210619940481881,0.22003844559374602,"OS03G0358000",null,830.691944332316,868.754742318425,1004.52220719555,974.933175883782,"no","OS03G0358000","Os03g0358000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VXN2]","Similar to PWWP domain containing protein, expressed. (Os03t0358000-00)",3,13841934,13860530]
["OS07T0540100-01",0.0266734771724031,0.212500378751584,0.36279812432491104,"OS07G0540100",null,430.125153997837,406.58545404713,485.901123239989,590.039717669143,"no","OS07G0540100","Os07g0540100 protein [Source:UniProtKB/TrEMBL;Acc:Q7XHL0]","Serine/threonine protein kinase-related domain containing protein. (Os07t0540100-01)",7,21295200,21299576,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0412401-01",0.0270183614346408,0.21401736545272101,-0.195227813087709,"OS08G0412401",null,1650.98850720534,1579.27161944356,1442.21280374627,1379.20932935218,"no","OS08G0412401","Os08g0412401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFS8]","Similar to Adenosine 5'-phosphosulfate reductase-like. (Os08t0412401-01)",8,19730276,19733253,"GO:0034976;GO:0003756;GO:0006457;GO:0005783;GO:0005623;GO:0045454;GO:0016020;GO:0016021","response to endoplasmic reticulum stress;protein disulfide isomerase activity;protein folding;endoplasmic reticulum;cell;cell redox homeostasis;membrane;integral component of membrane","Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:cjm, GOC:mah];Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins. [EC:5.3.4.1, GOC:vw, http://en.wikipedia.org/wiki/Protein_disulfide-isomerase#Function];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0134000-02",0.027095755848824003,0.214352546010687,0.727910937205502,"OS07G0134000",null,422.982237989697,484.56734354531,611.115755985582,892.003322428244,"no","OS07G0134000","Os07g0134000 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZLK8]","Amino acid permease, Transport of amino acids (Os07t0134000-02);Similar to Amino acid permease 6. (Os07t0134000-03);Similar to Amino acid permease 6. (Os07t0134000-04)",7,1788844,1794564,"GO:0016020;GO:0016021;GO:0003333;GO:0015171;GO:0005886","membrane;integral component of membrane;amino acid transmembrane transport;amino acid transmembrane transporter activity;plasma membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS01T0798100-02",0.0273232620717589,0.21492798733686402,0.244369910395752,"OS01G0798100",null,1320.91034691489,1314.44597665987,1668.0307557464,1453.74725398594,"no","OS01G0798100","Os01g0798100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9B8]","Similar to cDNA clone:J023120H23, full insert sequence. (Os01t0798100-01);Conserved hypothetical protein. (Os01t0798100-02)",1,33790593,33794100,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0234500-02",0.0276295554908942,0.21600260474867,"Inf","OS02G0234500",null,0,0,36.7586467906409,11.3850813114523,"no","OS02G0234500","Os02g0234500 protein [Source:UniProtKB/TrEMBL;Acc:Q6EUK5]","NAD(P)-binding domain containing protein. (Os02t0234500-01);Similar to predicted protein. (Os02t0234500-02);Similar to UOS1. (Os02t0234500-03)",2,7621905,7627260,"GO:0005773;GO:0009507;GO:0009570","vacuole;chloroplast;chloroplast stroma","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS10T0533900-01",0.0278179641315037,0.216652693505851,-0.20804294872713103,"OS10G0533900",null,1248.58605129704,1322.68938848244,1090.83826462311,1135.14263564825,"no","OS10G0533900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8LN31]","Protein of unknown function DUF862, eukaryotic domain containing protein. (Os10t0533900-01)",10,20768491,20777051]
["OS09T0493400-01",0.0282572994443212,0.21845138985464702,-0.289975379969561,"OS09G0493400",null,484.180897402473,550.691690924594,426.383114168425,420.055750783179,"no","OS09G0493400","Os09g0493400 protein [Source:UniProtKB/TrEMBL;Acc:B9G4C3]","Domain of unknown function DUF547 domain containing protein. (Os09t0493400-01)",9,19104092,19108716]
["OS02T0510600-01",0.0283194859612182,0.21859952882444103,0.5240432757163891,"OS02G0510600",null,151.554047192745,144.549404327267,238.573891475586,187.21685098236,"no","OS02G0510600","Os02g0510600 protein [Source:UniProtKB/TrEMBL;Acc:Q6K793]","Heavy metal transport/detoxification protein domain containing protein. (Os02t0510600-01);Conserved hypothetical protein. (Os02t0510600-02)",2,18252570,18256034,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS09T0527900-01",0.028742851840364698,0.22041958067942302,0.208380707270436,"OS09G0527900",null,1139.85645075717,1138.87244697876,1315.80420852631,1317.01782176332,"no","OS09G0527900","Os09g0527900 protein [Source:UniProtKB/TrEMBL;Acc:Q651Z9]","Similar to Hd1-like protein. (Os09t0527900-01);Hypothetical conserved gene. (Os09t0527900-02)",9,20646416,20649984,"GO:0009640;GO:0006355;GO:0000989;GO:0005634;GO:0005622;GO:0008270","photomorphogenesis;regulation of transcription, DNA-templated;transcription factor activity, transcription factor binding;nucleus;intracellular;zinc ion binding","The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0158500-02",0.0289299178121507,0.220795508917349,0.43235289454392906,"OS03G0158500",null,2700.54630763259,2345.52127944271,3752.22360164535,3057.10437996576,"no","OS03G0158500","Os03g0158500 protein [Source:UniProtKB/TrEMBL;Acc:Q10RI4]","YT521-B-like protein family protein. (Os03t0158500-01);Similar to YT521-B-like family protein, expressed. (Os03t0158500-02);Similar to YT521-B-like family protein, expressed. (Os03t0158500-03);Similar to YT521-B-like family protein, expressed. (Os03t0158500-04)",3,3126216,3130478,"GO:0003723","RNA binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS02T0123600-01",0.0293631975410212,0.222570405900981,-0.8186028133610691,"OS02G0123600",null,649.037480597832,808.09380611933,323.419859219411,502.760149176001,"no","OS02G0123600","CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Source:UniProtKB/TrEMBL;Acc:Q6Z717]","Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1). (Os02t0123600-01);Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1). (Os02t0123600-02)",2,1231098,1234484,"GO:0008654;GO:0005794;GO:0016780;GO:0006629;GO:0016020;GO:0016021;GO:0016740;GO:0003881;GO:0006661;GO:0016491;GO:0055114","phospholipid biosynthetic process;Golgi apparatus;phosphotransferase activity, for other substituted phosphate groups;lipid metabolic process;membrane;integral component of membrane;transferase activity;CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity;phosphatidylinositol biosynthetic process;oxidoreductase activity;oxidation-reduction process","The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor). [GOC:jl, http://www.chem.qmul.ac.uk/iubmb/enzyme/EC2/intro.html];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: myo-inositol + CDP-diacylglycerol = 1-phosphatidyl-1D-myo-inositol + CMP + H(+). [EC:2.7.8.11, RHEA:11583];The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS07T0662600-01",0.0297399767137363,0.22428412706580103,0.22723619464879302,"OS07G0662600",null,777.58853495638,762.700608686415,935.6550210267,867.39246671456,"no","OS07G0662600","Os07g0662600 protein [Source:UniProtKB/TrEMBL;Acc:Q8H2U2]","RNA recognition motif, RNP-1 domain containing protein. (Os07t0662600-01)",7,27945178,27948097,"GO:0005730;GO:0000447;GO:0003723;GO:0003676;GO:0000472;GO:0000480;GO:0034462","nucleolus;endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);RNA binding;nucleic acid binding;endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA);endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);small-subunit processome assembly","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Endonucleolytic cleavage between the 5'-External Transcribed Spacer (5'-ETS) and the 5' end of the SSU-rRNA of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. [GOC:curators, PMID:10690410];Endonucleolytic cleavage within the 5'-External Transcribed Spacer (ETS) of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. Endonucleolytic cleavage within the 5'-ETS of the pre-RNA is conserved as one of the early steps of rRNA processing in all eukaryotes, but the specific position of cleavage is variable. [GOC:curators, PMID:10690410, PMID:15282326];The aggregation, arrangement and bonding together of proteins and RNA molecules to form a small-subunit processome. [GOC:mah]"]
["OS10T0502400-01",0.0300644048345502,0.225350269015009,-1.09368343592262,"OS10G0502400",null,133.148015442527,196.975869563404,76.2811104083859,78.4029014778044,"no","OS10G0502400","Glutamyl-tRNA reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0C587]","Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment). (Os10t0502400-01);Similar to Glutamyl-tRNA reductase. (Os10t0502400-02)",10,19159179,19162398,"GO:0033014;GO:0008883;GO:0050661;GO:0055114;GO:0006782;GO:0006779;GO:0015995;GO:0009536;GO:0009507;GO:0016491","tetrapyrrole biosynthetic process;glutamyl-tRNA reductase activity;NADP binding;oxidation-reduction process;protoporphyrinogen IX biosynthetic process;porphyrin-containing compound biosynthetic process;chlorophyll biosynthetic process;plastid;chloroplast;oxidoreductase activity","The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah];Catalysis of the reaction: (S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = L-glutamyl-tRNA(Glu) + H(+) + NADPH. [EC:1.2.1.70, RHEA:12347];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS03T0201901-00",0.0301469375241908,0.22558265544073303,-0.487304709276407,"OS03G0201901",null,741.980966581516,737.412767481017,450.268679376554,605.066560528783,"no","OS03G0201901","Os03g0201901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VUB0]","Glycoside hydrolase, family 10 domain containing protein. (Os03t0201901-00)",3,5331153,5335603,"GO:0045493;GO:0016798;GO:0008152;GO:0004553;GO:0005975;GO:0016787","xylan catabolic process;hydrolase activity, acting on glycosyl bonds;metabolic process;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS05T0370650-00",0.0303088197686071,0.22589004578878402,0.470952088399668,"OS05G0370650",null,279.201828259671,246.645859850312,325.285049350087,403.552390637307,"no","OS05G0370650","Os05g0370650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WLH7]","Hypothetical protein. (Os05t0370650-00)",5,17813459,17815901]
["OS03T0338000-01",0.0306091464234859,0.22665308810720802,-0.561167609239806,"OS03G0338000",null,2067.92364915687,1529.58477142794,1148.73285777236,1289.49077371402,"no","OS03G0338000","Os03g0338000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VX85]","Similar to alanine--glyoxylate aminotransferase 2. (Os03t0338000-01)",3,12556849,12559702,"GO:0042802;GO:0005739;GO:0030170;GO:0008483;GO:0008453;GO:0003824;GO:0016740","identical protein binding;mitochondrion;pyridoxal phosphate binding;transaminase activity;alanine-glyoxylate transaminase activity;catalytic activity;transferase activity","Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Catalysis of the reaction: L-alanine + glyoxylate = pyruvate + glycine. [EC:2.6.1.44];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0257200-01",0.031073670544701098,0.22870700613869202,0.601460945840522,"OS07G0257200","NRAMP5",10726.1562240245,7957.63116874819,12733.4646946386,15614.5534862665,"no","OS07G0257200","Nramp metal transporter [Source:UniProtKB/TrEMBL;Acc:I7GYG6]","Manganese and Cadmium transporter, Mn and Cd uptake (Os07t0257200-01)",7,8871643,8878905,"GO:0055072;GO:0006810;GO:0005215;GO:0006811;GO:0016020;GO:0016021","iron ion homeostasis;transport;transporter activity;ion transport;membrane;integral component of membrane","Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0849600-01",0.031471032224046,0.23046571824282203,-0.21088668525914,"OS03G0849600",null,1858.09989511388,2014.39932549426,1592.35066893105,1753.51207486111,"no","OS03G0849600","Brefeldin A-sensitive Golgi protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q84LH7]","COG complex component, COG2 family protein. (Os03t0849600-01)",3,35736085,35741607,"GO:0017119;GO:0007030;GO:0008565;GO:0006891;GO:0015031;GO:0016020;GO:0005773","Golgi transport complex;Golgi organization;protein transporter activity;intra-Golgi vesicle-mediated transport;protein transport;membrane;vacuole","A  multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8. [GOC:krc, PMID:11980916, PMID:20972446, PMID:9792665];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. [GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). [ISBN:0716731363];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS05T0524200-01",0.0315417338793629,0.23070697952652502,-0.35190946830459,"OS05G0524200",null,1328.07229667048,1239.42028754835,904.682172216694,1107.06728194934,"no","OS05G0524200","Os05g0524200 protein [Source:UniProtKB/TrEMBL;Acc:Q0DGM1]","Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os05t0524200-01)",5,26095991,26099189,"GO:0004439;GO:0035335;GO:0016311;GO:0004725;GO:0008138;GO:0016791;GO:0006470","phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;peptidyl-tyrosine dephosphorylation;dephosphorylation;protein tyrosine phosphatase activity;protein tyrosine/serine/threonine phosphatase activity;phosphatase activity;protein dephosphorylation","Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate. [EC:3.1.3.36, RHEA:22767];The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [GOC:mah];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric residues from a protein. [GOC:hb]"]
["OS05T0114600-01",0.0317908232409314,0.23131060530053302,-0.253892442745257,"OS05G0114600",null,594.225035025448,652.595387002229,515.172275242399,530.449613732358,"no","OS05G0114600","Os05g0114600 protein [Source:UniProtKB/TrEMBL;Acc:B9FKC1]","Conserved hypothetical protein. (Os05t0114600-01)",5,791891,794636]
["OS08T0512700-01",0.0321595175994156,0.232703891640778,-0.42770541461121603,"OS08G0512700",null,1930.46692339314,2326.64032940115,1444.61986573546,1720.29791856848,"no","OS08G0512700","3-hydroxy-3-methylglutaryl coenzyme A reductase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XHS1]","Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment). (Os08t0512700-01)",8,25427055,25431499,"GO:0005778;GO:0008299;GO:0004420;GO:0016126;GO:0005789;GO:0015936;GO:0005783;GO:0050662;GO:0016616;GO:0050661;GO:0055114;GO:0016491;GO:0016021;GO:0016020","peroxisomal membrane;isoprenoid biosynthetic process;hydroxymethylglutaryl-CoA reductase (NADPH) activity;sterol biosynthetic process;endoplasmic reticulum membrane;coenzyme A metabolic process;endoplasmic reticulum;coenzyme binding;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;NADP binding;oxidation-reduction process;oxidoreductase activity;integral component of membrane;membrane","The lipid bilayer surrounding a peroxisome. [GOC:mah];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH. [EC:1.1.1.34, RHEA:15992];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [ISBN:0198547684];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0676200-03",0.0325448437900571,0.23412057157377603,-0.331305742929046,"OS07G0676200",null,609.892349791264,606.11409415139,532.245920904777,434.256419520375,"no","OS07G0676200","Os07g0676200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XA21]","Non-protein coding transcript. (Os07t0676200-01);Conserved hypothetical protein. (Os07t0676200-02);Non-protein coding transcript. (Os07t0676200-03)",7,28631054,28638611]
["OS02T0168100-01",0.0328665334387249,0.235223919306584,0.33044891577106,"OS02G0168100",null,275.31360241078,301.133996406929,379.949143230098,344.878703948579,"no","OS02G0168100","Os02g0168100 protein [Source:UniProtKB/TrEMBL;Acc:Q0E3L4]","Similar to 4-hydroxyphenylpyruvate dioxygenase. (Os02t0168100-01)",2,3677525,3679266,"GO:0006572;GO:0016701;GO:0003868;GO:0005829;GO:0009072;GO:0051213;GO:0046872;GO:0055114;GO:0005634;GO:0006355;GO:0006351;GO:0003677","tyrosine catabolic process;oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;4-hydroxyphenylpyruvate dioxygenase activity;cytosol;aromatic amino acid family metabolic process;dioxygenase activity;metal ion binding;oxidation-reduction process;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding","The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor. [GOC:mah];Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2. [EC:1.13.11.27];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0628900-01",0.0333712708622798,0.23714278999328403,-0.18013589926710802,"OS03G0628900",null,1582.90133686882,1586.19793591551,1379.64696438021,1417.46296413564,"no","OS03G0628900","Probable prefoldin subunit 4 [Source:Projected from Arabidopsis thaliana (AT1G08780) UniProtKB/Swiss-Prot;Acc:Q9M4B5]","Prefoldin domain containing protein. (Os03t0628900-01)",3,23998912,24003186,"GO:0016272;GO:0006457;GO:0051087;GO:0005737;GO:0051082;GO:0005829","prefoldin complex;protein folding;chaperone binding;cytoplasm;unfolded protein binding;cytosol","A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. [GOC:jl, PMID:17384227, PMID:24068951, PMID:9630229];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS04T0254000-01",0.0335952989790962,0.23792386982136,0.26174914600239,"OS04G0254000",null,485.164865646849,511.577140914997,564.933233646494,630.09208261026,"no","OS04G0254000","Os04g0254000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JEK1]","Similar to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1). (Os04t0254000-01)",4,10061764,10065209,"GO:0009089;GO:0008840;GO:0016829;GO:0008152;GO:0003824","lysine biosynthetic process via diaminopimelate;4-hydroxy-tetrahydrodipicolinate synthase;lyase activity;metabolic process;catalytic activity","The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. [GOC:go_curators];Catalysis of the reaction: pyruvate + L-aspartate-4-semialdehyde = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O. [EC:4.3.3.7, RHEA:14848];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0554000-01",0.0337026056602275,0.237986217706695,-0.393611448650155,"OS08G0554000",null,864.477165468205,1091.30759830874,745.281861251727,743.503897514153,"no","OS08G0554000","Os08g0554000 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3F8]","WD-40 repeat containing protein. (Os08t0554000-01);Similar to protein TSSC1. (Os08t0554000-02)",8,27703403,27707229]
["OS08T0117700-01",0.0338682652493349,0.23824725524046703,-0.650070444193344,"OS08G0117700",null,108.040915459172,92.639723706941,66.3396983603246,61.543877836351,"no","OS08G0117700","Os08g0117700 protein [Source:UniProtKB/TrEMBL;Acc:Q69UH7]","Serine/threonine protein kinase domain containing protein. (Os08t0117700-01)",8,974289,978910,"GO:0004674;GO:0005886;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0819200-00",0.0342039827643804,0.23896198151109,-0.8925195635298611,"OS01G0819200",null,60.1359812461431,41.1732105364182,29.271152002409,25.3013279937784,"no","OS01G0819200","Os01g0819200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9S4]","Similar to calcium lipid binding protein-like. (Os01t0819200-00)",1,34903696,34906955,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0547600-00",0.0346137503940925,0.24073121763950403,-1.77000384979191,"OS01G0547600",null,19.3658244690969,20.5866052682091,6.82993546722877,4.88443474891674,"no","OS01G0547600","Os01g0547600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3U2]","High-affinity nitrate transporter, Nitrate transport, Auxin signaling (Os01t0547600-01)",1,20386195,20388403,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0694100-01",0.034929454364913896,0.24171340651344203,-0.42112585553119,"OS01G0694100",null,217.477504642331,223.201422063021,164.678478681522,164.438864540885,"no","OS01G0694100","Os01g0694100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V6V4]","Leucine-rich repeat domain containing protein. (Os01t0694100-01)",1,28669652,28673566,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0157500-02",0.0349422182158314,0.24174697711279,-0.37487567461151705,"OS08G0157500","COMT",26963.4615389816,25933.4835777615,18034.786990137,22757.8488911495,"no","OS08G0157500","Flavone 3'-O-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZD89]","Caffeic acid O-methyltransferase, Flavonoid 3'-O-methyltransferase, Melatonin biosynthesis, Tricin biosynthesis (Os08t0157500-01);Similar to Quercetin 3-O-methyltransferase 1. (Os08t0157500-02)",8,3337800,3340918,"GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740;GO:0009809;GO:0005737;GO:0030187;GO:0017096;GO:0030744;GO:0047763;GO:0051555;GO:0102822","O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity;lignin biosynthetic process;cytoplasm;melatonin biosynthetic process;acetylserotonin O-methyltransferase activity;luteolin O-methyltransferase activity;caffeate O-methyltransferase activity;flavonol biosynthetic process;","Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers. [GOC:tair_curators, ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of melatonin (N-acetyl-5-methoxytryptamine). [GOC:mah, ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methionine + N-acetylserotonin = S-adenosyl-L-homocysteine + melatonin. Melatonin is also known as N-acetyl-5-methoxytryptamine. [EC:2.1.1.4];Catalysis of the reaction: S-adenosyl-L-methionine + luteolin = 4',5,7-trihydroxy-3'-methoxyflavone + S-adenosyl-L-homocysteine + H(+). [EC:2.1.1.42, RHEA:14592];Catalysis of the reaction: S-adenosyl-L-methionine + 3,4-dihydroxy-trans-cinnamate = S-adenosyl-L-homocysteine + 3-methoxy-4-hydroxy-trans-cinnamate. [EC:2.1.1.68, MetaCyc:CAFFEATE-O-METHYLTRANSFERASE-RXN];The chemical reactions and pathways resulting in the formation of flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities. [GOC:ai];"]
["OS07T0167500-01",0.0354130705868756,0.243625339466387,1.2641968823407899,"OS07G0167500",null,10.1925391942615,13.3812934243359,30.246857069156,26.3759476441504,"no","OS07G0167500","Os07g0167500 protein [Source:UniProtKB/TrEMBL;Acc:Q7F1R9]","Conserved hypothetical protein. (Os07t0167500-01)",7,3620456,3630778,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0407700-01",0.0358291670164219,0.244943546808172,-0.34957294247909704,"OS07G0407700",null,618.028348642112,545.600591861853,477.664665795321,435.570386871798,"no","OS07G0407700","Os07g0407700 protein [Source:UniProtKB/TrEMBL;Acc:Q0D726]","Hypothetical conserved gene. (Os07t0407700-01);Conserved hypothetical protein. (Os07t0407700-02);Hypothetical conserved gene. (Os07t0407700-03);Hypothetical conserved gene. (Os07t0407700-04)",7,12652916,12656448]
["OS10T0475900-01",0.0359987553763436,0.245345852123516,0.9486494020852051,"OS10G0475900",null,27.5198558245062,17.4986144779778,44.8824330703605,42.006138840684,"no","OS10G0475900","Os10g0475900 protein [Source:UniProtKB/TrEMBL;Acc:Q7XDE7]","Ubiquitin domain containing protein. (Os10t0475900-01)",10,17722467,17724969]
["OS01T0951000-01",0.0364054196090799,0.246448410865681,0.274564265749004,"OS01G0951000",null,499.024417177903,477.92305356599,597.569431987077,584.174259540168,"no","OS01G0951000","Os01g0951000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCW9]","Conserved hypothetical protein. (Os01t0951000-01);Similar to WD-repeat protein 33. (Os01t0951000-02)",1,41873950,41880597,"GO:0006379;GO:0006378;GO:0005847;GO:0009909;GO:0001700;GO:0031124;GO:0005623;","mRNA cleavage;mRNA polyadenylation;mRNA cleavage and polyadenylation specificity factor complex;regulation of flower development;embryonic development via the syncytial blastoderm;mRNA 3'-end processing;cell;","Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner. [GOC:mah];The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. [ISBN:0198506732];A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal. [PMID:14749727];Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators];The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster. [GOC:go_curators, GOC:mtg_sensu];Any process involved in forming the mature 3' end of an mRNA molecule. [GOC:mah];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];"]
["OS02T0200900-02",0.0366560601621573,0.24715914411449302,0.432456816901277,"OS02G0200900",null,462.367787872369,419.447736521234,667.500999076266,522.535314753545,"no","OS02G0200900","Os02g0200900 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z796]","Hypothetical conserved gene. (Os02t0200900-01);Leucine-rich repeat, cysteine-containing containing protein. (Os02t0200900-02);Hypothetical conserved gene. (Os02t0200900-03);Similar to F-box family member. (Os02t0200900-04)",2,5628122,5631254]
["OS05T0494500-01",0.036747663598801,0.24745748694524303,-0.19259109489092102,"OS05G0494500",null,6027.91847139164,5845.50117394969,4890.07475157462,5499.55619211359,"no","OS05G0494500","Os05g0494500 protein [Source:UniProtKB/TrEMBL;Acc:Q65X78]","Protein of unknown function DUF250 domain containing protein. (Os05t0494500-01);Protein of unknown function DUF250 domain containing protein. (Os05t0494500-02)",5,24287577,24289563,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0115400-03",0.0371515207204679,0.24902968296515202,0.177834852375917,"OS09G0115400",null,7117.06980995237,6656.78963107759,7788.14520536786,7792.63753010372,"no","OS09G0115400","Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:Q6YYV1]","Similar to Poly(A)-binding protein. (Os09t0115400-01);Hypothetical conserved gene. (Os09t0115400-03);Hypothetical conserved gene. (Os09t0115400-04)",9,1212964,1218005,"GO:0003723;GO:0003676;GO:0005737","RNA binding;nucleic acid binding;cytoplasm","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS05T0568600-01",0.0374971660606445,0.24997367719319102,-0.603920178006902,"OS05G0568600",null,141.676294800235,109.109007921508,71.2264698725286,93.7811471792015,"no","OS05G0568600","Os05g0568600 protein [Source:UniProtKB/TrEMBL;Acc:Q6AUN7]","Protein of unknown function DUF1645 family protein. (Os05t0568600-01)",5,28307089,28308038]
["OS07T0409100-01",0.037896827610969006,0.251263862233143,-0.165306205226563,"OS07G0409100",null,4482.67534986023,4615.51438659117,3891.10733013361,4222.10539696363,"no","OS07G0409100","Os07g0409100 protein [Source:UniProtKB/TrEMBL;Acc:Q7XAL6]","Similar to CLB1. (Os07t0409100-01)",7,12747743,12760653,"GO:0005783;GO:0008289;GO:0006950;GO:0006355;GO:0016020;GO:0016021","endoplasmic reticulum;lipid binding;response to stress;regulation of transcription, DNA-templated;membrane;integral component of membrane","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with a lipid. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0623100-01",0.0381976635216399,0.25239907978411,0.168616608696035,"OS07G0623100",null,1687.88449056971,1683.98431093951,1949.45872336044,1840.45501339183,"no","OS07G0623100","Os07g0623100 protein [Source:UniProtKB/TrEMBL;Acc:Q0D4I9]","Similar to ER66 protein (Fragment). (Os07t0623100-01)",7,25776199,25777874,"GO:0001077;GO:0045944;GO:0006366;GO:0043565;GO:0005634","transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding;positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;sequence-specific DNA binding;nucleus","Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:txnOH];Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS05T0106000-01",0.038698749774029796,0.253990161782204,0.422644087058681,"OS05G0106000",null,225.361027494305,182.184647498085,292.394037467479,253.872799957319,"no","OS05G0106000","Os05g0106000 protein [Source:UniProtKB/TrEMBL;Acc:Q65XI2]","Zinc finger, C2H2-type domain containing protein. (Os05t0106000-01);Hypothetical conserved gene. (Os05t0106000-02)",5,321161,324412,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS08T0451000-01",0.038776153304992296,0.25431224774224304,-0.179366415735805,"OS08G0451000",null,1588.86827452545,1707.65890699795,1434.19133511948,1476.94127847668,"no","OS08G0451000","Os08g0451000 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZLF0]","Sec34-like protein family protein. (Os08t0451000-01)",8,22013819,22024438,"GO:0017119;GO:0007030;GO:0008565;GO:0006891;GO:0006886;GO:0016020;GO:0005801;GO:0009860;GO:0048193;GO:0005829","Golgi transport complex;Golgi organization;protein transporter activity;intra-Golgi vesicle-mediated transport;intracellular protein transport;membrane;cis-Golgi network;pollen tube growth;Golgi vesicle transport;cytosol","A  multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8. [GOC:krc, PMID:11980916, PMID:20972446, PMID:9792665];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. [GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). [ISBN:0716731363];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum. [ISBN:0198506732, ISBN:0815316194];Growth of pollen via tip extension of the intine wall. [ISBN:00943088399];The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:0716731363, PMID:10219233];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS02T0681700-01",0.0391613895745083,0.25545235732208404,-0.7783657347316151,"OS02G0681700",null,75.4247900375354,53.5251736973437,32.1982672026499,42.9830257904674,"no","OS02G0681700","Os02g0681700 protein [Source:UniProtKB/TrEMBL;Acc:Q6EPM5]","Serine/threonine protein kinase-related domain containing protein. (Os02t0681700-01)",2,27840042,27841235,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0623600-01",0.0395256763969385,0.25666067274798404,-0.18886659832083302,"OS12G0623600",null,2190.37667284681,2333.4917071515,1882.1350737549,2086.63052473723,"no","OS12G0623600","(RAP Annotation release2) Protein of unknown function DUF1637 family protein [Source:UniProtKB/TrEMBL;Acc:Q2QLY7]","Protein of unknown function DUF1637 family protein. (Os12t0623600-01)",12,26629926,26632504,"GO:0016702;GO:0055114","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS07T0496200-03",0.0398064813825572,0.257627036408063,-0.16298645335334,"OS07G0496200",null,1977.13057772106,1961.88961489854,1784.50561419693,1733.72574898279,"no","OS07G0496200","NAD-dependent malic enzyme 1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT2G13560) UniProtKB/Swiss-Prot;Acc:Q9SIU0]","Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-01);Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-02);Similar to Malic enzyme. (Os07t0496200-03)",7,18587424,18596123,"GO:0051287;GO:0004471;GO:0004470;GO:0055114;GO:0046872;GO:0016491;GO:0006108;GO:0006090;GO:0005739;GO:0009507;GO:0005524;GO:0008270;GO:0042803;GO:0050897;GO:0009651","NAD binding;malate dehydrogenase (decarboxylating) (NAD+) activity;malic enzyme activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;malate metabolic process;pyruvate metabolic process;mitochondrion;chloroplast;ATP binding;zinc ion binding;protein homodimerization activity;cobalt ion binding;response to salt stress","Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of the reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH + H+. [EC:1.1.1.38, EC:1.1.1.39];Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];Interacting selectively and non-covalently with a cobalt (Co) ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]"]
["OS01T0367400-01",0.0402195228481851,0.258553795667932,-0.34200392606434105,"OS01G0367400",null,688.169136953664,849.410509351858,594.934435259465,618.130868084182,"no","OS01G0367400","Os01g0367400 protein [Source:UniProtKB/TrEMBL;Acc:Q5JJM1]","Conserved hypothetical protein. (Os01t0367400-01);Similar to cDNA clone:001-121-G01, full insert sequence. (Os01t0367400-02)",1,15019814,15023931]
["OS11T0571900-01",0.0403672125347919,0.258600636810474,-0.388046050703845,"OS11G0571900",null,3413.48137615819,4182.16886023668,2700.7516247556,3103.5698394617,"no","OS11G0571900","NA","Targeting for Xklp2 family protein. (Os11t0571900-01)","NA","NA","NA","NA","NA","NA"]
["OS06T0265000-01",0.0404756439893258,0.258922084414129,0.17826614922313602,"OS06G0265000",null,2115.9711367287,2167.76953474242,2552.44445461007,2294.70744504109,"no","OS06G0265000","Asparagine synthetase [glutamine-hydrolyzing] 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43011]","Asparagine synthetase, Long-distance transport of asparagine (Os06t0265000-01)",6,8758936,8765680,"GO:0006541;GO:0008652;GO:0016874;GO:0005524;GO:0000166;GO:0070981;GO:0009646;GO:0006529;GO:0042803;GO:0004066","glutamine metabolic process;cellular amino acid biosynthetic process;ligase activity;ATP binding;nucleotide binding;L-asparagine biosynthetic process;response to absence of light;asparagine biosynthetic process;protein homodimerization activity;asparagine synthase (glutamine-hydrolyzing) activity","The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid. [GOC:ai];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of asparagine, (2S)-2-amino-3-carbamoylpropanoic acid. [CHEBI:17196, GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid. [GOC:go_curators];Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate. [EC:6.3.5.4]"]
["OS02T0195000-02",0.040836037701056496,0.25966562858645104,0.23352507178855303,"OS02G0195000",null,550.397116490123,571.469799497624,652.746689653721,666.236899752244,"no","OS02G0195000","Os02g0195000 protein [Source:UniProtKB/TrEMBL;Acc:Q6H7Q9]","Protein of unknown function DUF2048 domain containing protein. (Os02t0195000-01);Protein of unknown function DUF2048 domain containing protein. (Os02t0195000-02)",2,5324568,5328286]
["OS10T0439600-01",0.0410940766292272,0.26013337389588304,0.5583458203046531,"OS10G0439600",null,84.2099811868934,82.043967549555,116.892198264743,127.930008926359,"no","OS10G0439600","Os10g0439600 protein [Source:UniProtKB/TrEMBL;Acc:Q337U3]","Similar to RNA-binding region containing protein 2 (Coactivator of activating protein-1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER). Splice isoform 3. (Os10t0439600-01);Similar to cDNA clone:J013102K13, full insert sequence. (Os10t0439600-02)",10,15780511,15788001,"GO:0003723;GO:0006397;GO:0005634;GO:0003676","RNA binding;mRNA processing;nucleus;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0586700-01",0.0414713647425135,0.26132999161951503,-0.17318151837644802,"OS03G0586700",null,1425.93623327719,1432.82772666735,1305.49337930744,1229.90066977724,"no","OS03G0586700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6F2V0]","Conserved hypothetical protein. (Os03t0586700-01)",3,21647446,21659950,"GO:0004725;GO:0005634;GO:0005737;GO:0035335;GO:0005829","protein tyrosine phosphatase activity;nucleus;cytoplasm;peptidyl-tyrosine dephosphorylation;cytosol","Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS09T0453300-01",0.0419302167603297,0.26294170411773204,-0.9276193106771541,"OS09G0453300",null,155.159792250937,208.532672908411,80.2038280426642,110.998451867629,"no","OS09G0453300","Os09g0453300 protein [Source:UniProtKB/TrEMBL;Acc:Q67UZ4]","Annexin family protein. (Os09t0453300-01);Similar to Fiber annexin. (Os09t0453300-02)",9,16999461,17001374,"GO:0005544;GO:0005509","calcium-dependent phospholipid binding;calcium ion binding","Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. [GOC:jl];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai]"]
["OS03T0113500-01",0.042252308090302004,0.26382434432350405,-0.451054140674625,"OS03G0113500",null,840.341404709252,1037.50534889847,617.328299371357,756.33192073619,"no","OS03G0113500","Os03g0113500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VS70]","Conserved hypothetical protein. (Os03t0113500-01)",3,752025,756172]
["OS03T0101800-02",0.0424053405917993,0.26450958876289304,-0.71271516776364,"OS03G0101800",null,220.591910476788,204.938679873174,105.964183493328,153.682118799095,"no","OS03G0101800","Os03g0101800 protein [Source:UniProtKB/TrEMBL;Acc:Q10T45]","Similar to DUF614 containing protein. (Os03t0101800-01);Protein of unknown function Cys-rich family protein. (Os03t0101800-02)",3,135249,137565,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0477800-01",0.0429374765398034,0.26646877579607403,0.17886183739844502,"OS08G0477800",null,1176.21902301778,1144.61525291243,1354.27863264479,1272.8836955677,"no","OS08G0477800","Os08g0477800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJC9]","PWWP domain containing protein. (Os08t0477800-01)",8,23561842,23566384]
["OS03T0337500-00",0.0433685706981137,0.26800092475096504,0.349103553345438,"OS03G0337500",null,296.388556647211,314.292271841585,347.149995391574,430.716251922054,"no","OS03G0337500","Potassium transporter [Source:UniProtKB/TrEMBL;Acc:A0A0P0VX74]","Similar to Potassium transporter. (Os03t0337500-00)",3,12520650,12528893,"GO:0005886;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016020;GO:0016021","plasma membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0468600-02",0.0438135149781333,0.269163552723227,0.87561644284754,"OS04G0468600",null,522.059650862576,281.84403617774,715.543864242581,759.452108426857,"no","OS04G0468600","Os04g0468600 protein [Source:UniProtKB/TrEMBL;Acc:B7E663]","Hypothetical conserved gene. (Os04t0468600-01);Heavy metal transport/detoxification protein domain containing protein. (Os04t0468600-02);Heavy metal transport/detoxification protein domain containing protein. (Os04t0468600-03);Similar to cDNA clone:006-303-A07, full insert sequence. (Os04t0468600-05);Similar to cDNA clone:006-303-A07, full insert sequence. (Os04t0468600-06)",4,23408498,23410250,"GO:0046916;GO:0030001;GO:0046914;GO:0005737","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS10T0406400-00",0.044014204053190696,0.26948335916494603,-0.314281639309055,"OS10G0406400",null,447.452470628082,545.545039607542,391.257731765534,407.361858059656,"no","OS10G0406400","Os10g0406400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUF8]","Similar to Cellulose synthase-like A1. (Os10t0406400-00)",10,13896201,13897680,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0794700-01",0.0441034912432094,0.269729493974079,0.32805034143752104,"OS02G0794700",null,1307.33786055384,1320.26220230575,1739.86282013331,1558.60503788027,"no","OS02G0794700",null,"Similar to Cytosol aminopeptidase (EC 3.4.11.1) (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase). (Os02t0794700-01);Similar to Leucine aminopeptidase (Cytosol aminopeptidase) (Fragment). (Os02t0794700-02)",2,33779324,33781476,"GO:0008235;GO:0019538;GO:0004177;GO:0030145;GO:0005622;GO:0005737;GO:0006508;","metalloexopeptidase activity;protein metabolic process;aminopeptidase activity;manganese ion binding;intracellular;cytoplasm;proteolysis;","Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#EXOPEPTIDASE];The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma];Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];"]
["OS08T0254900-02",0.0445155494425164,0.270993891134427,-1.06328164612235,"OS08G0254900",null,66.1227568991936,86.3878967386481,38.9768497716288,34.0059488729846,"no","OS08G0254900","Glutamyl-tRNA reductase-binding protein, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G21200) UniProtKB/Swiss-Prot;Acc:Q9LU39]","Similar to Glutamyl-tRNA reductase binding protein. (Os08t0254900-01);Non-protein coding transcript. (Os08t0254900-02)",8,9424760,9428473,"GO:0048037;GO:0043495;GO:0009767;GO:0009791;GO:0033014;GO:0070455;GO:0009507;GO:0009534;GO:0009570;GO:0043234","cofactor binding;protein anchor;photosynthetic electron transport chain;post-embryonic development;tetrapyrrole biosynthetic process;positive regulation of heme biosynthetic process;chloroplast;chloroplast thylakoid;chloroplast stroma;protein complex","Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. [ISBN:0198506732];Interacting selectively and non-covalently with both a protein or protein complex and a membrane, in order to maintain the localization of the protein at a specific membrane location. [GOC:go_curators];A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport, ISBN:0198547684];The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development. [GOC:go_curators];The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah];Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme. [GOC:mah];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. [GOC:go_curators, http://www.ebi.ac.uk/intact/complex/documentation/]"]
["OS07T0675100-01",0.0448939148866835,0.272159662108203,-0.516180108459356,"OS07G0675100",null,116.194946814582,124.548961872665,71.6213269254539,96.7118080285515,"no","OS07G0675100","Pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q6ZDX2]","Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment). (Os07t0675100-01)",7,28559086,28562956,"GO:0071944;GO:0046910;GO:0030599;GO:0045490;GO:0042545;GO:0045330;GO:0005618;GO:0043086;GO:0004857;GO:0016787","cell periphery;pectinesterase inhibitor activity;pectinesterase activity;pectin catabolic process;cell wall modification;aspartyl esterase activity;cell wall;negative regulation of catalytic activity;enzyme inhibitor activity;hydrolase activity","The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah];Stops, prevents or reduces the activity of any pectinesterase enzyme. [GOC:ai, PMID:10880981];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl];Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. [GOC:mah, UniProtKB-KW:KW-0063];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0103800-01",0.0453368937017247,0.273464555062626,0.183764405030439,"OS01G0103800",null,926.588559383934,934.014989505865,1082.70731875727,1030.64761970227,"no","OS01G0103800","Os01g0103800 protein [Source:UniProtKB/TrEMBL;Acc:Q658D7]","Conserved hypothetical protein. (Os01t0103800-01)",1,197647,200803]
["OS12T0589000-00",0.0455919016016126,0.273634426095968,0.697116705815349,"OS12G0589000",null,37.7123950187677,41.1732105364182,64.3965344052998,63.4976517359177,"no","OS12G0589000","Helix-loop-helix DNA-binding domain containing protein [Source:UniProtKB/TrEMBL;Acc:Q2QMV9]","Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0589000-00)",12,24632487,24633776,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983;GO:0003677","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity;DNA binding","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0744700-01",0.0460440441547977,0.27518341882186603,0.34544025590209804,"OS03G0744700",null,245.640194581703,267.625868486719,360.035169629631,292.089197985221,"no","OS03G0744700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q84MP5]","Conserved hypothetical protein. (Os03t0744700-01)",3,30593512,30596056]
["OS02T0127600-00",0.046222219627868,0.275849497405427,0.43970632235188306,"OS02G0127600",null,150.849580075071,185.279447413882,251.731907220717,204.16937250472,"no","OS02G0127600","Os02g0127600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VED0]","Pentatricopeptide repeat domain containing protein. (Os02t0127600-00)",2,1433094,1436127,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS09T0514500-00",0.046579470816008,0.27702861443852,-0.5596035156899251,"OS09G0514500",null,85.7966783631076,98.9603096836538,55.4921471853676,69.8633632862131,"no","OS09G0514500","Aleurone layer morphogenesis protein [Source:UniProtKB/TrEMBL;Acc:Q7XZV4]","Conserved hypothetical protein. (Os09t0514500-00)",9,20031961,20037613]
["OS02T0831100-01",0.0470544412201223,0.278378427984217,0.18283179695943902,"OS02G0831100",null,2023.99890730082,1840.24607993468,2278.79617124134,2107.5460001824,"no","OS02G0831100","Os02g0831100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VS07]","Conserved hypothetical protein. (Os02t0831100-01)",2,35741026,35742581,"GO:0046872;GO:0003677","metal ion binding;DNA binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS06T0474300-01",0.0473705624565839,0.27906298716710704,-0.75520334040656,"OS06G0474300",null,57.0782194878646,56.6131644875751,39.0282026698787,28.3297215437171,"no","OS06G0474300","Os06g0474300 protein [Source:UniProtKB/TrEMBL;Acc:Q69XX7]","Methyltransferase type 11 domain containing protein. (Os06t0474300-01)",6,15877891,15879564,"GO:0032259;GO:0008757;GO:0005737;GO:0008168;GO:0008152;GO:0016020;GO:0016021","methylation;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;methyltransferase activity;metabolic process;membrane;integral component of membrane","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0596400-01",0.0477295868688894,0.279998912829937,0.185134467023178,"OS04G0596400",null,1301.5872551072,1271.22287531191,1375.74414411322,1549.34270235639,"no","OS04G0596400","Os04g0595200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JAJ1]","Similar to UPF0195 protein CG30152. (Os04t0596400-01)",4,30081085,30084173,"GO:0006414;GO:0003924;GO:0003746;GO:0016226;GO:0005622;GO:0046872;GO:0005525","translational elongation;GTPase activity;translation elongation factor activity;iron-sulfur cluster assembly;intracellular;metal ion binding;GTP binding","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai]"]
["OS07T0673000-01",0.0478451277265686,0.280407508594307,-0.23587501057756102,"OS07G0673000",null,615.629367333397,634.067442260841,554.200477912277,507.004326937558,"no","OS07G0673000","Os07g0673000 protein [Source:UniProtKB/TrEMBL;Acc:Q0D3Q5]","Ureohydrolase domain containing protein. (Os07t0673000-01)",7,28445953,28448448]
["OS02T0437200-01",0.048582235417722004,0.283152319054224,-0.16437097779388202,"OS02G0437200",null,1134.42961232131,1162.1138673904,1023.51461501757,1025.73129727252,"no","OS02G0437200","Os02g0437200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VIH5]","SNAP-34. (Os02t0437200-01)",2,13949431,13951620]
["OS07T0642600-01",0.0488890356920808,0.284104195205713,0.17307759470243902,"OS07G0642600",null,1493.79179340356,1546.99120881476,1795.61739140924,1632.74700661154,"no","OS07G0642600","Os07g0642600 protein [Source:UniProtKB/TrEMBL;Acc:Q0D472]","Transcription elongation factor, TFIIS/CRSP70, N-terminal domain containing protein. (Os07t0642600-01)",7,26754722,26757533,"GO:0070449;GO:0006368;GO:0005634","elongin complex;transcription elongation from RNA polymerase II promoter;nucleus","A transcription elongation factor complex that suppresses RNA polymerase II pausing, and may act by promoting proper alignment of the 3'-end of nascent transcripts with the polymerase catalytic site. Consists of a transcriptionally active Elongin A subunit (abut 100 kDa)and two smaller Elongin B (about 18 kDa) and Elongin C (about 15 kDa)subunits. [PMID:12676794];The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0185400-01",0.0495163726511121,0.285223268709799,-1.8698916644822101,"OS02G0185400",null,23.8154022024604,12.5533957512014,5.93551156401527,4.01477222998533,"no","OS02G0185400","Os02g0185400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFQ1]","Cytochrome P450 domain containing protein. (Os02t0185400-01)",2,4768846,4771113,"GO:0016705;GO:0005506;GO:0055114;GO:0020037","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS11T0673200-01",0.049291371643424196,0.285223268709799,0.46457870108474,"OS11G0673200",null,123.329724250565,96.7570447605829,139.493107600155,164.207778580981,"no","OS11G0673200","Os11g0673200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y573]","Similar to Auxin-induced beta-glucosidase. (Os11t0673200-01)",11,27203693,27210574,"GO:0004553;GO:0005975;GO:0016787","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS07T0555200-05",0.0500238221639331,0.28681462269303,0.140350147447727,"OS07G0555200",null,2074.30577879847,2047.46821717994,2283.64405661289,2259.26224249459,"no","OS07G0555200","Os07g0555200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7E2]","Similar to Eukaryotic translation initiation factor 4g (Fragment). (Os07t0555200-01);Similar to Eukaryotic translation initiation factor 4g (Fragment). (Os07t0555200-02);Similar to predicted protein. (Os07t0555200-03);Similar to predicted protein. (Os07t0555200-04);Similar to predicted protein. (Os07t0555200-05)",7,22114961,22123129,"GO:0006417;GO:0003743;GO:0006413;GO:0006412;GO:0003723","regulation of translation;translation initiation factor activity;translational initiation;translation;RNA binding","Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS12T0547600-02",0.050151815670692004,0.287372359191575,1.4936145359664001,"OS12G0547600",null,31.8004401987798,12.5723939846929,75.5266100770634,49.424450332975,"no","OS12G0547600",null,"Calmodulin binding protein-like domain containing protein. (Os12t0547600-01);Hypothetical conserved gene. (Os12t0547600-02)",12,22133336,22136891,"GO:0005516;GO:0006950","calmodulin binding;response to stress","Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS03T0356484-01",0.0506839201245049,0.289168091063282,0.204036536872366,"OS03G0356484",null,643.149223157903,691.709937011826,784.466873664561,753.179838282962,"no","OS03G0356484","Mitochondrial fission 1 protein [Source:UniProtKB/TrEMBL;Acc:Q10L89]","Tetratricopeptide-like helical domain containing protein. (Os03t0356484-01)",3,13659659,13662772,"GO:0000266;GO:0005739;GO:0005741;GO:0016020;GO:0016021;GO:0016559","mitochondrial fission;mitochondrion;mitochondrial outer membrane;membrane;integral component of membrane;peroxisome fission","The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. [PMID:11038192];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments. [GOC:mah, PMID:11687502, PMID:14754507]"]
["OS01T0717000-01",0.0511406025481781,0.29037811828312804,-0.24253225969795603,"OS01G0717000",null,572.662816565485,546.867574825557,473.366023856548,472.928664994314,"no","OS01G0717000","Os01g0717000 protein [Source:UniProtKB/TrEMBL;Acc:Q5JMB6]","Similar to GmCK1p (EC 2.7.1.32). (Os01t0717000-01);Similar to Choline kinase. (Os01t0717000-02);Similar to Choline kinase. (Os01t0717000-05)",1,29842914,29846824,"GO:0016310;GO:0016301","phosphorylation;kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS08T0320100-01",0.051470539256192896,0.291101058007258,0.25122652383743604,"OS08G0320100",null,603.982332308003,601.775555030712,739.563623148449,695.551796895133,"no","OS08G0320100","Os08g0320100 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z0P6]","Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0320100-01);Hypothetical conserved gene. (Os08t0320100-02)",8,13930625,13934681,"GO:0003723;GO:0003676;GO:0030529;GO:0019013","RNA binding;nucleic acid binding;intracellular ribonucleoprotein complex;viral nucleocapsid","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. [ISBN:0781702534]"]
["OS02T0793000-01",0.0518852079328231,0.292148336299965,0.259779105792733,"OS02G0793000",null,382.012907867551,372.663873083665,435.854509760007,467.716505964199,"no","OS02G0793000","Zinc finger CCCH domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q6K687]","Zinc finger, CCCH-type domain containing protein. (Os02t0793000-01);Similar to cDNA clone:001-204-A04, full insert sequence. (Os02t0793000-02)",2,33694789,33698561,"GO:0046872;GO:0003677;GO:0003676","metal ion binding;DNA binding;nucleic acid binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0577000-01",0.052305197328201096,0.293156955689918,-0.13049923469992902,"OS03G0577000",null,9548.86337246276,9208.71356753933,8419.13520724661,8716.19794033919,"no","OS03G0577000","40S ribosomal protein S3, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q75G91]","Similar to Ribosomal protein S3 (Fragment). (Os03t0577000-01)",3,21097594,21100006,"GO:0003684;GO:0002181;GO:0006281;GO:0022627;GO:0003735;GO:0005634;GO:0015935;GO:0003723;GO:0030529;GO:0005840;GO:0006412;GO:0008534","damaged DNA binding;cytoplasmic translation;DNA repair;cytosolic small ribosomal subunit;structural constituent of ribosome;nucleus;small ribosomal subunit;RNA binding;intracellular ribonucleoprotein complex;ribosome;translation;oxidized purine nucleobase lesion DNA N-glycosylase activity","Interacting selectively and non-covalently with damaged DNA. [GOC:jl];The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. [GOC:hjd];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];The small subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The smaller of the two subunits of a ribosome. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme-substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site. [GOC:elh, PMID:11554296]"]
["OS04T0592700-01",0.052347259280662,0.293156955689918,0.201616308185594,"OS04G0592700",null,806.229850266088,815.229568621081,989.364937681424,875.290707005881,"no","OS04G0592700","OSJNBa0009P12.21 protein [Source:UniProtKB/TrEMBL;Acc:Q0JAK5]","WD40 repeat-like domain containing protein. (Os04t0592700-01)",4,29981606,29988159,"GO:0034388;GO:0030515;GO:0032040;GO:0000462;GO:0006364;GO:0009793;GO:0009880;GO:0051301;GO:0005730","Pwp2p-containing subcomplex of 90S preribosome;snoRNA binding;small-subunit processome;maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);rRNA processing;embryo development ending in seed dormancy;embryonic pattern specification;cell division;nucleolus","A protein complex that forms a subcomplex of the 90S preribosome and can interact directly with the 5' External Transcribed Spacer (ETS) of the full length pre-rRNA transcript. In S. cerevisiae, it sediments at 25-30 S and is composed of Pwp2p, Dip2p, Utp21p, Utp13p, Utp18p, and Utp6p. [GOC:krc, PMID:15231838];Interacting selectively and non-covalently with small nucleolar RNA. [GOC:mah];A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12068309, PMID:12957375, PMID:15120992, PMID:15590835];Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. [GOC:curators];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu];The process that results in the patterns of cell differentiation that will arise in an embryo. [GOC:go_curators, ISBN:0521436125];The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732]"]
["OS08T0538000-02",0.0527054833695697,0.293789076428954,0.218753341429296,"OS08G0538000",null,1286.75934925095,1331.52779795353,1634.27909398279,1412.69380372963,"no","OS08G0538000","Os08g0538000 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZD35]","Similar to Glycyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS). (Os08t0538000-01);Similar to H0209H04.1 protein. (Os08t0538000-02)",8,26900384,26904520,"GO:0004820;GO:0006426;GO:0005737;GO:0000166;GO:0005524;GO:0005739;GO:0006418;GO:0004812;GO:0070150","glycine-tRNA ligase activity;glycyl-tRNA aminoacylation;cytoplasm;nucleotide binding;ATP binding;mitochondrion;tRNA aminoacylation for protein translation;aminoacyl-tRNA ligase activity;mitochondrial glycyl-tRNA aminoacylation","Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). [EC:6.1.1.14];The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];The process of coupling glycine to glycyl-tRNA in a mitochondrion, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mah, GOC:mcc]"]
["OS03T0177300-01",0.0531715485107818,0.294613340096237,0.20942333476639502,"OS03G0177300",null,519.819498907339,528.046425129564,616.645602184083,594.92415241806,"no","OS03G0177300","E3 ubiquitin-protein ligase SPL2 [Source:Projected from Arabidopsis thaliana (AT1G54150) UniProtKB/Swiss-Prot;Acc:Q9SYH3]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0177300-01)",3,4090005,4093914,"GO:0006996;GO:0016567;GO:0004842;GO:0016020;GO:0016021;GO:0009941","organelle organization;protein ubiquitination;ubiquitin-protein transferase activity;membrane;integral component of membrane;chloroplast envelope","A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. [GOC:mah];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS07T0102300-01",0.053317678364339496,0.29499487674525504,-0.217338558050853,"OS07G0102300",null,695.131173048637,789.49631203582,631.281178185288,645.722273806794,"no","OS07G0102300","Os07g0102300 protein [Source:UniProtKB/TrEMBL;Acc:Q0D977]","Putative glycosylphosphatidylinositol-anchored protein, Regulation of leaf rolling (Os07t0102300-01)",7,134173,143578,"GO:0016020;GO:0016021;GO:0005886;GO:0009506;GO:0046658","membrane;integral component of membrane;plasma membrane;plasmodesma;anchored component of plasma membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah]"]
["OS01T0902000-01",0.0539577190853983,0.29713702838808403,0.325596988303997,"OS01G0902000",null,607.467931194309,606.325378880022,844.611753743612,676.493265826861,"no","OS01G0902000","Os01g0902000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JGU9]","Hypothetical protein. (Os01t0902000-01)",1,39275190,39283019]
["OS02T0817000-01",0.054350439306209496,0.29811752633452604,-0.21403633715835402,"OS02G0817000",null,800.114326749531,755.528413343275,684.685536883473,656.468029782259,"no","OS02G0817000","Os02g0817000 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6A1]","Homeodomain-related domain containing protein. (Os02t0817000-01)",2,35041083,35046389,"GO:0000783;GO:0031627;GO:0003691;GO:0003677","nuclear telomere cap complex;telomeric loop formation;double-stranded telomeric DNA binding;DNA binding","A complex of DNA and protein located at the end of a linear chromosome in the nucleus that protects and stabilizes a linear chromosome. [GOC:elh];The process in which linear telomeric DNA is remodeled into duplex loops, by the invasion of a 3' single-stranded overhang into the duplex region. [GOC:vw, PMID:10338214];Interacting selectively and non-covalently with double-stranded telomere-associated DNA. [GOC:jl, ISBN:0321000382];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS05T0557600-01",0.0544165312010709,0.29831937219722204,0.14679572445526,"OS05G0557600",null,1241.45127386106,1225.93234372185,1378.67125931346,1352.98842544994,"no","OS05G0557600","Os05g0557600 protein [Source:UniProtKB/TrEMBL;Acc:Q6I602]","Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os05t0557600-01)",5,27733895,27738318,"GO:0031625;GO:0061630;GO:0005737;GO:0016567","ubiquitin protein ligase binding;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination","Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS11T0153400-01",0.0550885079711238,0.300654536536937,-0.553068803950301,"OS11G0153400",null,247.080530236182,309.752898572243,159.041809480271,220.478481272531,"no","OS11G0153400","Os11g0153400 protein [Source:UniProtKB/TrEMBL;Acc:Q53LV1]","Similar to Rac GTPase activating protein 3 (Fragment). (Os11t0153400-01)",11,2500437,2505233,"GO:0007165","signal transduction","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]"]
["OS08T0505200-01",0.0554191418157243,0.30130862795970503,-0.19141463755749802,"OS08G0505200",null,2527.74972017686,2850.21549938355,2285.1012663214,2424.63340936227,"no","OS08G0505200","Os08g0505200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3T4]","tRNA-binding arm domain containing protein. (Os08t0505200-01)",8,24986875,24990425,"GO:0044611;GO:0017056;GO:0006999","nuclear pore inner ring;structural constituent of nuclear pore;nuclear pore organization","A subcomplex of the nuclear pore complex (NPC) that forms the inner rings of the core scaffold, a lattice-like structure that gives the NPC its shape and strength. In S. cerevisiae, the two inner rings are each composed of Nup192p, Nup188p, Nup170p and Nup157p. In vertebrates, the two inner rings are each composed of Nup205, Nup188 and Nup155. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. A single 'spoke', can be isolated and is sometimes referred to as the Nup170 complex. [GOC:dgf, PMID:18046406, PMID:19524430, PMID:20947011, PMID:22419078];The action of a molecule that contributes to the structural integrity of the nuclear pore complex. [GOC:mah];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear pore. [GOC:dph, GOC:jid, GOC:jl, GOC:mah]"]
["OS01T0534900-01",0.055991595921606296,0.30309270705119,-0.269384442811311,"OS01G0534900",null,7880.53833267138,8782.24580741801,6362.45222225061,7462.21769043506,"no","OS01G0534900","Os01g0534900 protein [Source:UniProtKB/TrEMBL;Acc:Q5JLH8]","Similar to Hv711N16.16 (Fragment). (Os01t0534900-01)",1,19394542,19405480,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0721700-02",0.056428410105177296,0.304292237957337,-0.37483018002335106,"OS02G0721700",null,1029.83668240592,1307.61594820672,854.42219949296,948.212351965794,"no","OS02G0721700","Os02g0721700 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z662]","Similar to Gpi-anchored protein (Fragment). (Os02t0721700-01);Similar to Gpi-anchored protein (Fragment). (Os02t0721700-02)",2,29947241,29949558,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0553100-00",0.0568189751189153,0.30523083610337,-0.47800785515767,"OS09G0553100",null,1603.45453199632,1159.18855772529,1013.1019604678,970.388329582523,"no","OS09G0553100","Histone H4 [Source:UniProtKB/TrEMBL;Acc:Q7XUC9]","Similar to Histone H4. (Os09t0553100-00)",9,21912086,21912668,"GO:0003677;GO:0042393;GO:0006334;GO:0000786;GO:0005694;GO:0046982;GO:0005634;GO:0000788","DNA binding;histone binding;nucleosome assembly;nucleosome;chromosome;protein heterodimerization activity;nucleus;nuclear nucleosome","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the nucleus into higher order structures. [GOC:elh]"]
["OS01T0191100-01",0.0570868584974114,0.30540491380377105,-0.116296089876151,"OS01G0191100",null,10428.521935905,10731.8160458624,9823.39344268786,9698.14268057691,"no","OS01G0191100","Os01g0191100 protein [Source:UniProtKB/TrEMBL;Acc:Q5SNH7]","Similar to Acidic ribosomal protein P2a-4 (Fragment). (Os01t0191100-01)",1,4852435,4854387,"GO:0002181;GO:0003735;GO:0022625;GO:0006414;GO:0030529;GO:0005840;GO:0005622","cytoplasmic translation;structural constituent of ribosome;cytosolic large ribosomal subunit;translational elongation;intracellular ribonucleoprotein complex;ribosome;intracellular","The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. [GOC:hjd];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS02T0573500-01",0.0571697923257624,0.30546545910050604,-0.5581056133818091,"OS02G0573500",null,396.546915860496,271.327992934019,224.758492211884,228.857751011127,"no","OS02G0573500","Os02g0573500 protein [Source:UniProtKB/TrEMBL;Acc:Q6YXC0]","Similar to Monosaccharide transporter 1. (Os02t0573500-01)",2,21995524,22002502,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0022891;GO:0022857;GO:0006810;GO:0055085;GO:0005215;GO:0016021;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;substrate-specific transmembrane transporter activity;transmembrane transporter activity;transport;transmembrane transport;transporter activity;integral component of membrane;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0531100-01",0.0576433403617688,0.306761772292764,0.38912651421236505,"OS09G0531100",null,166.138388866463,154.399539511568,235.144921086019,184.631633509053,"no","OS09G0531100","Os09g0531100 protein [Source:UniProtKB/TrEMBL;Acc:Q652K7]","Conserved hypothetical protein. (Os09t0531100-01)",9,20799161,20802920]
["OS01T0518500-02",0.0580155483564833,0.30724406888321704,0.42584278957014904,"OS01G0518500",null,984.132847929945,1286.17299541308,1403.89073884341,1645.94058099897,"no","OS01G0518500","Alpha-galactosidase [Source:UniProtKB/TrEMBL;Acc:Q5QLK3]","Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycoside hydrolase, family 27 protein. (Os01t0518500-02)",1,18394242,18401686,"GO:0052692;GO:0004557;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0003824;GO:0005618","raffinose alpha-galactosidase activity;alpha-galactosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;catalytic activity;cell wall","Catalysis of the reaction: raffinose + H2O = alpha-D-galactose + sucrose. [MetaCyc:RXN-11502];Catalysis of the hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase. [EC:3.2.1.22];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259]"]
["OS03T0840900-01",0.0583468386839639,0.30830380758776604,-0.28554905044246903,"OS03G0840900",null,2496.15284867465,2985.05776389032,2142.64832657634,2354.29754897787,"no","OS03G0840900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6AVR1]","Protein of unknown function DUF543 family protein. (Os03t0840900-01)",3,35355703,35358918,"GO:0005739;GO:0030247;GO:0005509","mitochondrion;polysaccharide binding;calcium ion binding","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai]"]
["OS03T0366000-01",0.058580521013055005,0.30908422207699804,-0.153181360561364,"OS03G0366000",null,1302.60650902662,1365.92125954568,1216.70421823347,1183.01009618764,"no","OS03G0366000","10 kDa chaperonin, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10KY5]","Similar to Chaperonin. (Os03t0366000-01)",3,14298449,14301345,"GO:0051087;GO:0051082;GO:0006457;GO:0005737;GO:0005759;GO:0046872;GO:0006986;GO:0051085","chaperone binding;unfolded protein binding;protein folding;cytoplasm;mitochondrial matrix;metal ion binding;response to unfolded protein;chaperone mediated protein folding requiring cofactor","Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:jl];The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release. [GOC:rb]"]
["OS01T0649100-02",0.0588848893623233,0.30949698368911405,0.19715344667270002,"OS01G0649100",null,5111.52686627294,5470.22305873672,5697.90615878654,6433.37295450334,"no","OS01G0649100","Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q94JA2]","Malate dehydrogenase. (Os01t0649100-01);Malate dehydrogenase. (Os01t0649100-02)",1,26190754,26194403,"GO:0006099;GO:0030060;GO:0016615;GO:0006108;GO:0016616;GO:0055114;GO:0016491;GO:0005975;GO:0019752;GO:0003824","tricarboxylic acid cycle;L-malate dehydrogenase activity;malate dehydrogenase activity;malate metabolic process;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;carbohydrate metabolic process;carboxylic acid metabolic process;catalytic activity","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. [EC:1.1.1.37];Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. [GOC:mah, ISBN:0582227089];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0803250-00",0.0593071826215164,0.31042539719934403,0.598673742148917,"OS02G0803250",null,98.8864363715537,71.6055896398948,147.76880985875,110.411326392123,"no","OS02G0803250","Os02g0803250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VR91]","Similar to predicted protein. (Os02t0803250-00)",2,34242810,34252960,"GO:0016740","transferase activity","Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0302700-01",0.0597728764160858,0.311482715342414,2.7309147552796,"OS03G0302700",null,0,5.17967795652,19.6393255146288,14.7473361456599,"no","OS03G0302700","Os03g0302700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DSK3]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0302700-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0302700-02)",3,10672591,10674055,"GO:0005680;GO:0042787;GO:0061630;GO:0004842;GO:0097602;GO:0045842;GO:0016567","anaphase-promoting complex;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;ubiquitin-protein transferase activity;cullin family protein binding;positive regulation of mitotic metaphase/anaphase transition;protein ubiquitination","A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B. [GOC:jh, GOC:vw, PMID:10465783, PMID:10611969];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Interacting selectively and non-covalently with any member of the cullin family, hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). [GOC:ha, InterPro:IPR016158, PMID:18698375];Any process that activates or increases the frequency, rate or extent of the cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the activation of the anaphase promoting complex by Cdc20/Sleepy homolog which results in the degradation of Securin. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS09T0513000-01",0.0600743337777455,0.312062209309784,-0.12339739035098,"OS09G0513000",null,8509.9492196223,8730.19443852631,7666.67493800203,8160.17791081231,"no","OS09G0513000","Os09g0513000 protein [Source:UniProtKB/TrEMBL;Acc:Q69IN8]","Similar to TGB12K interacting protein 3. (Os09t0513000-01)",9,19961104,19964106,"GO:0030941;GO:0045036;GO:0031359","chloroplast targeting sequence binding;protein targeting to chloroplast;integral component of chloroplast outer membrane","Interacting selectively and non-covalently with a chloroplast targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the chloroplast. [GOC:mah];The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:0716731363];The component of the chloroplast outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah]"]
["OS01T0367900-01",0.0607417285069708,0.31411328526489,0.151782223108337,"OS01G0367900",null,3225.83072501701,3345.2961474625,3838.95345912633,3461.18091702491,"no","OS01G0367900","Probable chromatin-remodeling complex ATPase chain [Source:UniProtKB/Swiss-Prot;Acc:Q7G8Y3]","Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os01t0367900-01)",1,15075863,15083305,"GO:0016818;GO:0004386;GO:0031011;GO:0006338;GO:0016569;GO:0006281;GO:0043044;GO:0016887;GO:0016787;GO:0005634;GO:0003676;GO:0006351;GO:0003677;GO:0005524;GO:0000166;GO:0031491","hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;helicase activity;Ino80 complex;chromatin remodeling;covalent chromatin modification;DNA repair;ATP-dependent chromatin remodeling;ATPase activity;hydrolase activity;nucleus;nucleic acid binding;transcription, DNA-templated;DNA binding;ATP binding;nucleotide binding;nucleosome binding","Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. [GOC:jh, GOC:rb, PMID:19355820];Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. [GOC:jid, GOC:vw, PMID:12697820];The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. [GOC:mah, GOC:vw];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors. [GOC:jl, PMID:12042764];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:mah]"]
["OS04T0379600-01",0.06087426214853,0.314335365615496,0.24677118790991,"OS04G0379600",null,2554.25032208194,2563.03235589204,2770.02668449464,3301.87789026772,"no","OS04G0379600","Os04g0379600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDT2]","Defence response, Rin4 domain containing protein. (Os04t0379600-01)",4,18547278,18550971]
["OS04T0522500-01",0.0611511016807208,0.31484470147444904,"Inf","OS04G0522500",null,0,0,5.8542304004818,8.79198254805014,"no","OS04G0522500","OSJNBa0019D11.23 protein [Source:UniProtKB/TrEMBL;Acc:Q7XP65]","2OG-Fe(II) oxygenase domain containing protein. (Os04t0522500-01)",4,26130711,26134356,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS11T0102900-01",0.0615150875890354,0.315337073157753,0.22178489111599,"OS11G0102900",null,601.520802825135,610.512888880046,689.225954031835,724.21801525134,"no","OS11G0102900","Leucine-rich repeat family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RBQ5]","Similar to predicted protein. (Os11t0102900-01)",11,117292,124378,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0137400-00",0.0618693001648678,0.315960524816071,-2.85172582196276,"OS01G0137400",null,15.153601313263,12.0962831578968,3.77493652611827,0,"no","OS01G0137400","Os01g0137400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXS4]","Protein kinase, catalytic domain domain containing protein. (Os01t0137400-00)",1,1988716,2003083,"GO:0030247;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0135850-00",0.062376238198818004,0.317229044486241,-0.354990552920359,"OS02G0135850",null,212.00481524064,203.80739215527,157.088515746262,168.024555362736,"no","OS02G0135850","Os02g0135850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VEA8]","Hypothetical conserved gene. (Os02t0135850-00)",2,1907249,1907863]
["OS01T0631900-00",0.0624222720893348,0.31732310521767504,-0.35413605979835105,"OS01G0631900",null,629.898922205363,750.381762026222,487.852533373483,591.993491568709,"no","OS01G0631900","Os01g0631900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5L9]","Similar to aspartic proteinase oryzasin-1. (Os01t0631900-00)",1,25291327,25298088,"GO:0030163;GO:0006508;GO:0004190;GO:0006629;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;lipid metabolic process;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS11T0208800-01",0.0628631377661521,0.318348182501488,-0.9428703902128561,"OS11G0208800",null,78.380350195646,118.35239451658,41.0246005388896,61.3151564934831,"no","OS11G0208800","D-mannose binding lectin family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R917]","Similar to Receptor-like protein kinase. (Os11t0208800-01)",11,5586534,5589198,"GO:0030246;GO:0048544;GO:0005524;GO:0016020;GO:0016021","carbohydrate binding;recognition of pollen;ATP binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0148500-02",0.06292661122920501,0.318378942939516,-0.23598436444411902,"OS11G0148500",null,5036.77468242161,5458.74742435747,4107.60866493724,4804.19634374409,"no","OS11G0148500","Pyruvate kinase 1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q2RAK2]","Cytosolic pyruvate kinase, Plant morphological development (Os11t0148500-02)",11,2239301,2243356,"GO:0005829;GO:0006096;GO:0030955;GO:0004743;GO:0005737;GO:0016310;GO:0016301;GO:0000287;GO:0046872;GO:0005524;GO:0000166;GO:0003824;GO:0016740","cytosol;glycolytic process;potassium ion binding;pyruvate kinase activity;cytoplasm;phosphorylation;kinase activity;magnesium ion binding;metal ion binding;ATP binding;nucleotide binding;catalytic activity;transferase activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Interacting selectively and non-covalently with potassium (K+) ions. [GOC:mah];Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate. [EC:2.7.1.40];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0814150-00",0.063555944097993,0.319222768134239,-0.6230885843423281,"OS01G0814150",null,86.9102037169076,129.321458116909,74.0724551164476,66.3223156958928,"no","OS01G0814150","Os01g0814150 protein [Source:UniProtKB/TrEMBL;Acc:C7IXS1]","Conserved hypothetical protein. (Os01t0814150-00)",1,34628726,34629879]
["OS07T0508500-01",0.0639379853329963,0.320182482854237,-0.273137911533892,"OS07G0508500",null,327.930459664693,316.598685119431,274.705209913373,258.65407033376,"no","OS07G0508500",null,"Ser/Thr kinase, Generation of proper tension between homologous kinetochores (Os07t0508500-01)",7,19328729,19331880,"GO:0007094;GO:0004672;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0051754;GO:0000778","mitotic spindle assembly checkpoint;protein kinase activity;phosphorylation;kinase activity;protein phosphorylation;ATP binding;meiotic sister chromatid cohesion, centromeric;condensed nuclear chromosome kinetochore","A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The cell cycle process in which centromeres of sister chromatids are joined during meiosis. [PMID:14730319, PMID:16325576];A multisubunit complex that is located at the centromeric region of a condensed nuclear chromosome and provides an attachment point for the spindle microtubules. [GOC:elh]"]
["OS02T0245000-02",0.0643351314431576,0.320802158077925,0.181934553571504,"OS02G0245000",null,2258.95580074281,2075.69396319908,2586.85213088213,2330.39199813942,"no","OS02G0245000","Os02g0245000 protein [Source:UniProtKB/TrEMBL;Acc:Q6EUD5]","Ubiquitin domain containing protein. (Os02t0245000-01);Similar to predicted protein. (Os02t0245000-02)",2,8197017,8199726,"GO:0071013;GO:0003723;GO:0006396;GO:0071004;GO:0005686;GO:0000381;GO:0000389","catalytic step 2 spliceosome;RNA binding;RNA processing;U2-type prespliceosome;U2 snRNP;regulation of alternative mRNA splicing, via spliceosome;mRNA 3'-splice site recognition","A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. [GOC:ab, GOC:krc, GOC:mah, PMID:17332742, PMID:19239890];A ribonucleoprotein complex that contains small nuclear RNA U2. [GOC:krc, GOC:mah];Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. [GOC:krc];Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome. [GOC:krc, ISBN:0879695897]"]
["OS09T0466800-01",0.0645685824297243,0.320959025517698,-0.6615178490696421,"OS09G0466800",null,50.9626959713077,64.8478065948587,40.9796128033726,32.2372693428505,"no","OS09G0466800","Os09g0466800 protein [Source:UniProtKB/TrEMBL;Acc:Q6YXH2]","Conserved hypothetical protein. (Os09t0466800-01)",9,17731574,17733252,"GO:0016757;GO:0016020;GO:0016021","transferase activity, transferring glycosyl groups;membrane;integral component of membrane","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0655400-01",0.0646667753960376,0.321113154421073,-0.159717521965655,"OS07G0655400",null,1331.14561877056,1458.56098325262,1263.53806143732,1233.80821757637,"no","OS07G0655400","Os07g0655400 protein [Source:UniProtKB/TrEMBL;Acc:Q7EYZ3]","Protein of unknown function DUF1751, integral membrane, eukaryotic domain containing protein. (Os07t0655400-01)",7,27550899,27555186,"GO:0006890;GO:0005794;GO:0006508;GO:0004252;GO:0016021;GO:0016020","retrograde vesicle-mediated transport, Golgi to ER;Golgi apparatus;proteolysis;serine-type endopeptidase activity;integral component of membrane;membrane","The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS10T0486900-01",0.0651020599973688,0.32200069542845505,0.203314180103344,"OS10G0486900",null,1637.04066423468,1828.0253126037,1891.28956499082,2098.18017211535,"no","OS10G0486900","Os10g0486900 protein [Source:UniProtKB/TrEMBL;Acc:Q7XD86]","Tetratricopeptide-like helical domain containing protein. (Os10t0486900-01)",10,18420721,18425369,"GO:0051879","Hsp90 protein binding","Interacting selectively and non-covalently with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size. [GOC:ai]"]
["OS01T0663500-01",0.0655172435454093,0.32272618874998,-0.35174567923937305,"OS01G0663500",null,205.889291724083,208.954043472323,179.529732281442,145.556155517719,"no","OS01G0663500","Os01g0663500 protein [Source:UniProtKB/TrEMBL;Acc:Q5SN39]","Transcriptional coactivator/pterin dehydratase family protein. (Os01t0663500-01)",1,27095458,27100193,"GO:0006729;GO:0008124","tetrahydrobiopterin biosynthetic process;4-alpha-hydroxytetrahydrobiopterin dehydratase activity","The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine. [CHEBI:15372, GOC:go_curators, ISBN:0198506732];Catalysis of the reaction: (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4a-hydroxypterin = (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7,8-dihydro-6H-pterin + H(2)O. [EC:4.2.1.96, RHEA:11923]"]
["OS04T0628000-01",0.0658909981402338,0.32323406794804505,-0.239501127664507,"OS04G0628000",null,442.356201030951,411.732105364182,353.205234162402,370.240153967889,"no","OS04G0628000","APO protein 4, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G21740) UniProtKB/Swiss-Prot;Acc:Q9LSZ0]","Protein of unknown function DUF794, plant family protein. (Os04t0628000-01)",4,31959627,31961695,"GO:0006413;GO:0003743;GO:0003723","translational initiation;translation initiation factor activity;RNA binding","The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS03T0253500-00",0.0661554075652481,0.323755159677359,0.223370232934284,"OS03G0253500",null,448.471724547508,404.526793520309,482.974008039749,512.865648636258,"no","OS03G0253500","G-patch domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NZ4]","D111/G-patch domain containing protein. (Os03t0253500-00)",3,8101572,8102858,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS02T0265300-01",0.0662685929372952,0.323856578866137,-1.20507820960365,"OS02G0265300",null,25.1066510373533,20.9733718614922,9.9631305437025,10.0238872001816,"no","OS02G0265300","Os02g0265300 protein [Source:UniProtKB/TrEMBL;Acc:B9F4W7]","Protein of unknown function DUF3778 domain containing protein. (Os02t0265300-01)",2,9449342,9450315,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0550300-00",0.0666205448756438,0.32441678148560305,-0.8056258153922631,"OS09G0550300",null,87.5770003374512,96.7570447605829,36.1010874696378,69.3589734346178,"no","OS09G0550300","Os09g0550300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPZ9]","S-locus glycoprotein domain containing protein. (Os09t0550300-00)",9,21761758,21765360,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0227800-00",0.0672778065945083,0.32606084771208105,0.46358821659331206,"OS07G0227800",null,269.361461954893,239.946903861368,406.273405037142,296.04616269704,"no","OS07G0227800","Os07g0227800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KN57]","Similar to ubiquinone biosynthesis protein ubiB. (Os07t0227800-00)",7,7152964,7158005,"GO:0016310;GO:0016301;GO:0009507;GO:0010287","phosphorylation;kinase activity;chloroplast;plastoglobule","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379]"]
["OS01T0260800-01",0.0676081533984662,0.326748065573839,-0.11910861370759901,"OS01G0260800",null,5285.85082614404,5671.60975139161,4951.70321374086,5137.44846891063,"no","OS01G0260800","Os01g0260800 protein [Source:UniProtKB/TrEMBL;Acc:Q9LE46]","Conserved hypothetical protein. (Os01t0260800-01)",1,8767828,8773510]
["OS12T0502800-02",0.0679425131208983,0.327556160005109,-0.24867510477960103,"OS12G0502800",null,1944.13396430443,2062.05475358906,1715.16821715373,1656.7166547882,"no","OS12G0502800","Os12g0502800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YAS8]","Similar to Ureide permease 2. (Os12t0502800-02);Similar to Ureide permease 2. (Os12t0502800-03);Similar to Ureide permease 2. (Os12t0502800-04)",12,19161739,19165120,"GO:0071705;GO:0016021;GO:0016020","nitrogen compound transport;integral component of membrane;membrane","The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:51143, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0971200-02",0.0685474979421322,0.328980833519527,-0.5016086126974431,"OS01G0971200",null,208.389692927354,274.820082837632,148.761601392756,192.538544058818,"no","OS01G0971200","Lysine ketoglutarate reductase trans-splicing related 1-like [Source:UniProtKB/TrEMBL;Acc:Q5JME7]","Protein of unknown function DUF707 family protein. (Os01t0971200-01);Similar to Lysine ketoglutarate reductase trans-splicing related 1. (Os01t0971200-02)",1,42848228,42852984,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0401300-01",0.0686026032310971,0.32898593489389905,-0.123267253296996,"OS04G0401300",null,1418.80145584121,1389.59585560412,1281.10075263877,1297.30586931229,"no","OS04G0401300","Os04g0401300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WA33]","Similar to OSIGBa0155K12.5 protein. (Os04t0401300-01)",4,19851402,19859052,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0172000-01",0.0689987972377213,0.329846855454054,0.5521186018066121,"OS06G0172000",null,45.8664263741769,58.671825014396,77.0807002730104,76.1971820831012,"no","OS06G0172000","Os06g0172000 protein [Source:UniProtKB/TrEMBL;Acc:Q5SND3]","Pentatricopeptide repeat domain containing protein. (Os06t0172000-01)",6,3640786,3643222,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS01T0563500-01",0.0694786120952383,0.33082820252323303,-0.209366445001991,"OS01G0563500",null,583.083075311596,582.740565856839,498.501725280917,509.838930066308,"no","OS01G0563500","Os01g0563500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V4D5]","Hypothetical conserved gene. (Os01t0563500-01)",1,21447489,21450077]
["OS11T0293900-01",0.0701169245981531,0.332538385644641,0.117770521991735,"OS11G0293900",null,1403.51264704981,1401.94781876504,1526.978429459,1517.10543301354,"no","OS11G0293900","Plant UBX domain-containing protein 11 [Source:Projected from Arabidopsis thaliana (AT2G43210) UniProtKB/Swiss-Prot;Acc:Q9ZW74]","UBX domain containing protein. (Os11t0293900-01);Similar to UBX domain containing protein, expressed. (Os11t0293900-02)",11,10738489,10747538]
["OS05T0135400-01",0.0704624697058347,0.33307480860361405,-0.593176869042337,"OS05G0135400",null,250.007117984965,204.592440751917,118.905187439159,182.440499211393,"no","OS05G0135400","Os05g0135400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DKY6]","Plant peroxidase domain containing protein. (Os05t0135400-01)",5,2073613,2075302,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0098869;GO:0055114;GO:0006979;GO:0020037","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS04T0474500-01",0.0710510736797508,0.334631170504663,-0.9315023550600041,"OS04G0474500",null,302.854935505833,233.347664728654,95.2483206257946,185.889171100974,"no","OS04G0474500","Os04g0474500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBU4]","Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment). (Os04t0474500-01);Similar to OSIGBa0135C13.5 protein. (Os04t0474500-02);Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment). (Os04t0474500-03)",4,23727976,23733621,"GO:0004553;GO:0005975","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS07T0208900-02",0.0710688995612687,0.33466353566521,-0.237747666263726,"OS07G0208900",null,444.00442507497,459.774320370055,366.919980149422,399.546108306513,"no","OS07G0208900","Os07g0208900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KN43]","Similar to transporter-related. (Os07t0208900-01);Similar to transporter-related. (Os07t0208900-02)",7,5880098,5884357,"GO:0055085;GO:0016021;GO:0016020;","transmembrane transport;integral component of membrane;membrane;","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];"]
["OS01T0235300-02",0.0717524529606108,0.336175296210566,-0.148342149956632,"OS01G0235300",null,1558.05262924694,1451.35567140874,1328.54020588402,1386.80892536657,"no","OS01G0235300","Os01g0235300 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDX7]","SOUL haem-binding protein domain containing protein. (Os01t0235300-01);SOUL haem-binding protein domain containing protein. (Os01t0235300-02)",1,7470710,7472729]
["OS03T0831900-01",0.0722294144363292,0.33752723613623903,0.135360998351808,"OS03G0831900",null,1328.08785701228,1282.54550820943,1388.42830998093,1479.00684197199,"no","OS03G0831900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q851A3]","Zinc finger, U1-type domain containing protein. (Os03t0831900-01)",3,34941643,34944635,"GO:0046540;GO:0000398;GO:0003723;GO:0046872;GO:0003676;GO:0008270","U4/U6 x U5 tri-snRNP complex;mRNA splicing, via spliceosome;RNA binding;metal ion binding;nucleic acid binding;zinc ion binding","A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. [GOC:krc, GOC:pr, PMID:11867543];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS04T0593400-00",0.07255503071486209,0.338169534462314,0.156243585199273,"OS04G0593400",null,828.653436493463,824.493540991775,948.385324878052,893.851559051764,"no","OS04G0593400","Os04g0593400 protein [Source:UniProtKB/TrEMBL;Acc:A3AWZ0]","Similar to OSIGBa0142I02-OSIGBa0101B20.20 protein. (Os04t0593400-00)",4,30001534,30002419,"GO:0009607;GO:0006952","response to biotic stimulus;defense response","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS06T0474200-01",0.0730356715980612,0.33897223969701,0.13192919789683602,"OS06G0474200",null,1162.96872206524,1157.99654633676,1299.63914890696,1243.5770870742,"no","OS06G0474200","FKBP12-interacting protein of 37 kDa [Source:Projected from Arabidopsis thaliana (AT3G54170) UniProtKB/Swiss-Prot;Acc:Q9ZSZ8]","Similar to SKIP interacting protein 2. (Os06t0474200-01)",6,15863304,15872695,"GO:0080009;GO:0000381;GO:0005634;GO:0001510;GO:0010073;GO:0009506","mRNA methylation;regulation of alternative mRNA splicing, via spliceosome;nucleus;RNA methylation;meristem maintenance;plasmodesma","The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule. [PMID:18505803];Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. [GOC:krc];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd];Any process involved in maintaining the identity, size and shape of a meristem. [GOC:tb];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS10T0483000-01",0.07303500933802201,0.33897223969701,-0.115603863371494,"OS10G0483000",null,3506.23348282597,3783.81804829684,3316.42152187294,3412.26611559324,"no","OS10G0483000","Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8LNW1]","Basal transcription factor 3-like protein, Vegetative growth and reproductive development (Os10t0483000-01)",10,18240660,18243388,"GO:0006355;GO:0006351","regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0487300-02",0.0734528920389658,0.33962729270796405,-0.42900121598544,"OS05G0487300",null,133.291775041768,129.122536187756,87.5540322962229,107.360976653361,"no","OS05G0487300","Os05g0487300 protein [Source:UniProtKB/TrEMBL;Acc:Q75KZ0]","Conserved hypothetical protein. (Os05t0487300-01);Conserved hypothetical protein. (Os05t0487300-02)",5,23978577,23979669]
["OS04T0381000-01",0.07397377277269601,0.340673596868312,0.170279627902778,"OS04G0381000",null,614.610113413971,621.715479099915,706.410468324804,684.797751798128,"no","OS04G0381000","Os04g0381000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9A2]","Similar to DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding. (Os04t0381000-01)",4,18659540,18669900,"GO:0000266;GO:0008017;GO:0003924;GO:0005737;GO:0005525;GO:0000166","mitochondrial fission;microtubule binding;GTPase activity;cytoplasm;GTP binding;nucleotide binding","The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. [PMID:11038192];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS04T0658000-02",0.074511163607933,0.34204871242774504,0.0995789930304346,"OS04G0658000",null,3074.74213091501,3153.16329105396,3261.58396335809,3411.37221024045,"no","OS04G0658000","Apospory-associated protein C [Source:UniProtKB/TrEMBL;Acc:Q8S3Q3]","Similar to OSIGBa0132E09-OSIGBa0108L24.1 protein. (Os04t0658000-01);Similar to Possible apospory-associated like protein. (Os04t0658000-02)",4,33557486,33563976,"GO:0016853;GO:0030246;GO:0005975;GO:0003824","isomerase activity;carbohydrate binding;carbohydrate metabolic process;catalytic activity","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS06T0713400-01",0.0750696492268406,0.34329528963759204,-0.24065588235163302,"OS06G0713400",null,402.605298173331,382.91085798869,355.156644295896,309.673163081322,"no","OS06G0713400","Os06g0713400 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z7U2]","Cyclin-like F-box domain containing protein. (Os06t0713400-01)",6,30225297,30230658]
["OS06T0555400-01",0.0755185495325565,0.344143145408911,0.0954149821155602,"OS06G0555400",null,7681.38618056698,8082.11484478475,8575.35722608401,8265.93652394004,"no","OS06G0555400","40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:Q0DBK8]","Similar to 40S ribosomal protein S19-like. (Os06t0555400-01)",6,21163415,21167131,"GO:0000462;GO:0022627;GO:0030529;GO:0005840;GO:0005622;GO:0006412;GO:0003735","maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);cytosolic small ribosomal subunit;intracellular ribonucleoprotein complex;ribosome;intracellular;translation;structural constituent of ribosome","Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. [GOC:curators];The small subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah]"]
["OS08T0326100-01",0.0758262521994829,0.34446086465928605,0.16231532644547803,"OS08G0326100",null,691.054157370933,743.176450182349,809.835205399982,795.185977123646,"no","OS08G0326100","Nuclear inhibitor of PP1-like [Source:UniProtKB/TrEMBL;Acc:Q8H4Y5]","Forkhead-associated domain containing protein. (Os08t0326100-01)",8,14325350,14328132,"GO:0004865;GO:0003729;GO:0043086;GO:0016607;GO:0035308","protein serine/threonine phosphatase inhibitor activity;mRNA binding;negative regulation of catalytic activity;nuclear speck;negative regulation of protein dephosphorylation","Stops, prevents or reduces the activity of a serine/threonine protein phosphatase, an enzyme that catalyzes the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy. [http://www.cellnucleus.com/];Any process the stops, prevents, or reduces the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]"]
["OS07T0556200-01",0.0759275551805637,0.34465425966572405,-0.8724333468877381,"OS07G0556200","PETC",287.429605278175,388.057509305742,243.926266686742,125.041529572269,"no","OS07G0556200","Cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q69S39]","Rieske [2Fe-2S] region domain containing protein. (Os07t0556200-01)",7,22184407,22186890,"GO:0042651;GO:0051537;GO:0051536;GO:0015979;GO:0009579;GO:0009536;GO:0009535;GO:0009507;GO:0055114;GO:0046872;GO:0016491;GO:0016020;GO:0016021;GO:0009496;GO:0016679;GO:0045158;GO:0010196;GO:0042742;GO:0080167;GO:0005886;GO:0009534;GO:0009941","thylakoid membrane;2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;photosynthesis;thylakoid;plastid;chloroplast thylakoid membrane;chloroplast;oxidation-reduction process;metal ion binding;oxidoreductase activity;membrane;integral component of membrane;plastoquinol--plastocyanin reductase activity;oxidoreductase activity, acting on diphenols and related substances as donors;electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity;nonphotochemical quenching;defense response to bacterium;response to karrikin;plasma membrane;chloroplast thylakoid;chloroplast envelope","The pigmented membrane of any thylakoid. [GOC:jl, GOC:pr];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: 2 H(+)[side 1] + 2 oxidized plastocyanin + plastoquinol-1 = 2 H(+)[side 2] + 2 reduced plastocyanin + plastoquinone. This reaction involves the concomitant transfer of 2 H+ ions across a membrane. [EC:1.10.9.1];Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Enables the directed movement of electrons within the cytochrome b6/f complex of photosystem II. [GOC:ai, ISBN:0716731363];The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. [PMID:10667783, PMID:10938857];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS12T0577600-01",0.07629677528446101,0.34527020351882903,-0.355793917739676,"OS12G0577600",null,393.432012898496,467.315939588347,373.695040564088,298.927406633705,"no","OS12G0577600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QN63]","Protein of unknown function DUF1336 domain containing protein. (Os12t0577600-01)",12,23879858,23884977]
["OS07T0691800-01",0.0767535093617763,0.34597309948582405,-1.42601469054926,"OS07G0691800","TBP2",1050.44093268754,978.468131746033,466.782694128059,288.291080116765,"no","OS07G0691800","26S protease regulatory subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P46466]","Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a). (Os07t0691800-01);Similar to 26S protease regulatory subunit 4 homolog. (Os07t0691800-02);Non-protein coding transcript. (Os07t0691800-03)",7,29435879,29440130,"GO:1901800;GO:0030163;GO:0016787;GO:0005737;GO:0005524;GO:0000166;GO:0036402;GO:0031597;GO:0031595;GO:0045899;GO:0030433;GO:0008540;GO:0000502;GO:0017025;GO:0005634","positive regulation of proteasomal protein catabolic process;protein catabolic process;hydrolase activity;cytoplasm;ATP binding;nucleotide binding;proteasome-activating ATPase activity;cytosolic proteasome complex;nuclear proteasome complex;positive regulation of RNA polymerase II transcriptional preinitiation complex assembly;ubiquitin-dependent ERAD pathway;proteasome regulatory particle, base subcomplex;proteasome complex;TBP-class protein binding;nucleus","Any process that activates or increases the frequency, rate or extent of proteasomal protein catabolic process. [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:21669198];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. [GOC:rb, PMID:11430818];A proteasome complex found in the cytosol of a cell. [GOC:mah, GOC:mtg_sensu];A proteasome found in the nucleus of a cell. [GOC:mah];Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly. [GOC:go_curators];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858];The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. [GOC:mtg_sensu, GOC:rb];A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. [GOC:rb, http://en.wikipedia.org/wiki/Proteasome];Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). [GOC:jl, GOC:txnOH, http://www.mblab.gla.ac.uk/, PMID:16858867];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS04T0548000-01",0.0771917776866097,0.34651648275268904,-0.15215118149443,"OS04G0548000",null,801.133580668957,813.17090809426,728.851684859984,723.873229789462,"no","OS04G0548000","Os04g0548000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JB96]","Protein of unknown function DUF862, eukaryotic domain containing protein. (Os04t0548000-01)",4,27426756,27429823]
["OS11T0644700-01",0.0774411769167973,0.34697766186503104,-0.7964430575960231,"OS11G0644700",null,63.1937430044216,108.079677658098,42.9310229368665,55.6825561376509,"no","OS11G0644700","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:Q2R0I1]","Plant disease resistance response protein family protein. (Os11t0644700-01)",11,25594109,25594874,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS12T0633600-01",0.07748301028413519,0.34697766186503104,-0.468742340721141,"OS12G0633600",null,198.7545142881,269.684529013539,152.882833898658,185.608520458836,"no","OS12G0633600","Early-responsive to dehydration protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLP9]","Protein of unknown function DUF221 domain containing protein. (Os12t0633600-01)",12,27154499,27160415,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0456400-01",0.0780454422773326,0.347961639663306,0.252538886834051,"OS07G0456400",null,409.580017723658,333.669980734599,445.994096695057,439.440927673925,"no","OS07G0456400","Os07g0456400 protein [Source:UniProtKB/TrEMBL;Acc:Q84YS0]","LUC7 related family protein. (Os07t0456400-01);LUC7 related family protein. (Os07t0456400-02);Similar to predicted protein. (Os07t0456400-03)",7,15868984,15874066,"GO:0005685;GO:0006376;GO:0003729;GO:0071004","U1 snRNP;mRNA splice site selection;mRNA binding;U2-type prespliceosome","A ribonucleoprotein complex that contains small nuclear RNA U1. [GOC:krc, GOC:mah];Selection of a splice site by components of the assembling spliceosome. [GOC:krc, ISBN:0879695897];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. [GOC:ab, GOC:krc, GOC:mah, PMID:17332742, PMID:19239890]"]
["OS08T0151300-02",0.0784195257050853,0.34862577138278605,0.21269576568719803,"OS08G0151300",null,387.316489381939,400.409472466667,439.067280036135,473.790170644924,"no","OS08G0151300","Myb transcription factor (ATMYB4)-like protein [Source:UniProtKB/TrEMBL;Acc:Q84PW8]","R2R3-MYB transcription factor, Regulation of leaf shape, cellulose synthesis and mechanical strength (Os08t0151300-01);Myb transcription factor domain containing protein. (Os08t0151300-02)",8,2948553,2951372,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0559600-01",0.0788866459813486,0.349297683404444,0.180959608569137,"OS01G0559600",null,1466.27603839937,1403.91498326845,1517.76343716195,1735.99323556166,"no","OS01G0559600","Os01g0559600 protein [Source:UniProtKB/TrEMBL;Acc:Q7F1B4]","Similar to C13 endopeptidase NP1 precursor. (Os01t0559600-01);Similar to Asparaginyl endopeptidase. (Os01t0559600-02)",1,21230393,21234906,"GO:0008233;GO:0006508;GO:0051603;GO:0004197;GO:0006624;GO:0005773","peptidase activity;proteolysis;proteolysis involved in cellular protein catabolic process;cysteine-type endopeptidase activity;vacuolar protein processing;vacuole","Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];Protein processing that takes place in the vacuole. Most protein processing in the vacuole represents proteolytic cleavage of precursors to form active enzymes. [GOC:mah];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS01T0278600-01",0.079282521817155,0.349998904617691,0.895013775984378,"OS01G0278600",null,28.8636725341408,27.8756419496815,39.0371315372581,66.4768660834619,"no","OS01G0278600","Os01g0278600 protein [Source:UniProtKB/TrEMBL;Acc:Q5NBK7]","PDZ/DHR/GLGF domain containing protein. (Os01t0278600-01);PDZ/DHR/GLGF domain containing protein. (Os01t0278600-02)",1,9816821,9822750,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0232000-03",0.0796390481751452,0.35029638299062804,0.0797937447875222,"OS06G0232000",null,5896.86828442693,5613.52694999503,6050.82307281957,6114.13305401331,"no","OS06G0232000","Os06g0232000 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXQ8]","Similar to Pro-resilin. (Os06t0232000-01);Hypothetical conserved gene. (Os06t0232000-02);Similar to Pro-resilin. (Os06t0232000-03)",6,6816406,6819804]
["OS10T0144000-00",0.0796645718561692,0.35029638299062804,1.13518325210296,"OS10G0144000",null,12.2310470331138,11.322632897515,33.1739722693969,18.5608520458836,"no","OS10G0144000","Os10g0144000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRF4]","Conserved hypothetical protein. (Os10t0144000-00)",10,2667065,2667466,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0648000-01",0.08017196374155901,0.35142235813947104,-0.21431596181031,"OS01G0648000","AKT1",5848.6791140516,5030.03695110549,4512.63593370472,4864.32504522632,"no","OS01G0648000","Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q0JKV1]","Potassium channel, Potassium uptake, Salt stress tolerance (Os01t0648000-01)",1,26119741,26126165,"GO:0005249;GO:0042391;GO:0005887;GO:0006813;GO:0006811;GO:0005216;GO:0006810;GO:0055085;GO:0071805;GO:0034765;GO:0005267;GO:0005244;GO:0016020;GO:0016021","voltage-gated potassium channel activity;regulation of membrane potential;integral component of plasma membrane;potassium ion transport;ion transport;ion channel activity;transport;transmembrane transport;potassium ion transmembrane transport;regulation of ion transmembrane transport;potassium channel activity;voltage-gated ion channel activity;membrane;integral component of membrane","Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, ISBN:0815340729];Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. [GOC:jl, GOC:mtg_cardio, GOC:tb, ISBN:0198506732];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). [GOC:cy, GOC:mtg_transport, GOC:pr, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. [GOC:mah];Enables the facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:BHF, GOC:mtg_transport, GOC:pr, ISBN:0815340729];Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0689000-01",0.0806633055579697,0.352312410494223,-0.5572080879105871,"OS01G0689000",null,90.7135988289277,65.8771368582692,48.7852533373483,57.6363300372176,"no","OS01G0689000","Os01g0689000 protein [Source:UniProtKB/TrEMBL;Acc:Q8S9V7]","Protein of unknown function DUF1639 family protein. (Os01t0689000-01)",1,28431993,28433405]
["OS10T0193100-00",0.08098195311266901,0.353002687094287,-0.353861402560116,"OS10G0193100",null,492.299643082832,473.49192116881,322.958377093246,432.760918754024,"no","OS10G0193100","Os10g0193100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSI2]","Conserved hypothetical protein. (Os10t0193100-00)",10,6484463,6486741,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0499250-00",0.0814221371388469,0.35320320137439704,-0.379533255797588,"OS08G0499250",null,179.497709506806,197.105614266443,131.511460630459,157.978331410422,"no","OS08G0499250","Os08g0499250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XHN9]","Hypothetical conserved gene. (Os08t0499250-00)",8,24645111,24645371]
["OS04T0376300-01",0.0815347438078355,0.35326841496326805,-0.115024037404196,"OS04G0376300",null,2000.79544383354,1953.66883995305,1763.09905561177,1888.32247393121,"no","OS04G0376300","Os04g0376300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDU3]","Similar to 3-oxoacyl-reductase. (Os04t0376300-01)",4,18382740,18384360,"GO:0055114;GO:0016491","oxidation-reduction process;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS06T0517500-00",0.0819928307337698,0.354049810062948,-0.47161064434745203,"OS06G0517500",null,105.61776682698,101.070541125659,83.617393757407,65.4377472465482,"no","OS06G0517500","Os06g0517500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXK4]","Hypothetical conserved gene. (Os06t0517500-00)",6,18935016,18954254]
["OS11T0619500-00",0.0821810835811997,0.35414439292571204,0.6339001472807031,"OS11G0619500",null,38.7316489381939,29.8505776389032,47.8095482706014,58.6132169870009,"no","OS11G0619500","Os11g0619500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y561]","Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 domain containing protein. (Os11t0619500-00)",11,24120143,24122947,"GO:0016579;GO:0036459;GO:0006511;GO:0006508;GO:0008233;GO:0016020;GO:0016021","protein deubiquitination;thiol-dependent ubiquitinyl hydrolase activity;ubiquitin-dependent protein catabolic process;proteolysis;peptidase activity;membrane;integral component of membrane","The removal of one or more ubiquitin groups from a protein. [GOC:ai];Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. [EC:3.4.19.12, GOC:bf, GOC:ka];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0442380-01",0.0826055713842148,0.35468070033786503,0.1233575275908,"OS11G0442380",null,1481.64503875811,1535.65321464545,1583.69690027589,1702.94628456546,"no","OS11G0442380","Os11g0442380 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y1W6]","Hypothetical gene. (Os11t0442380-01)",11,14568688,14571605]
["OS06T0324601-00",0.0829458566321151,0.355073814183043,"-Inf","OS06G0324601",null,7.41184568406649,5.65687830815662,0,0,"no","OS06G0324601","Os06g0324601 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WW03]","Hypothetical gene. (Os06t0324601-00)",6,12679380,12681614]
["OS06T0232600-02",0.08337579213335401,0.355601172450755,0.46439014066101,"OS06G0232600",null,80.2510579327887,83.0173520836186,111.33055365994,113.936420448194,"no","OS06G0232600","Glutathione S-transferase DHAR3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G16710) UniProtKB/Swiss-Prot;Acc:Q8LE52]","Similar to Dehydroascorbate reductase. (Os06t0232600-01);Non-protein coding transcript. (Os06t0232600-02)",6,6892683,6895614,"GO:0005737;GO:0098869;GO:0004364;GO:0006749;GO:0045174;GO:0009735;GO:0010731;GO:0009507;GO:0009570;GO:0009941","cytoplasm;cellular oxidant detoxification;glutathione transferase activity;glutathione metabolic process;glutathione dehydrogenase (ascorbate) activity;response to cytokinin;protein glutathionylation;chloroplast;chloroplast stroma;chloroplast envelope","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];Catalysis of the reaction: dehydroascorbate + 2 glutathione = L-ascorbate + glutathione disulfide. [EC:1.8.5.1, RHEA:24427];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl];The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. [GOC:BHF, GOC:dph, GOC:rl, GOC:tb];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS06T0611900-01",0.0835269393591927,0.35560301495048,-0.22091317014865403,"OS06G0611900",null,1658.77276119303,1931.00484779976,1609.01463925149,1471.09413349446,"no","OS06G0611900","Os06g0611900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WYZ5]","Similar to Glycine decarboxylase P subunit. (Os06t0611900-01);Similar to Victorin binding protein. (Os06t0611900-02)",6,24399546,24404035,"GO:0005739;GO:0006546;GO:0004375;GO:0055114;GO:0003824;GO:0016491;GO:0006544","mitochondrion;glycine catabolic process;glycine dehydrogenase (decarboxylating) activity;oxidation-reduction process;catalytic activity;oxidoreductase activity;glycine metabolic process","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. [GOC:go_curators];Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2. [EC:1.4.4.2];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving glycine, aminoethanoic acid. [GOC:go_curators]"]
["OS08T0107100-02",0.0835418690897321,0.35560301495048,-0.283717778559726,"OS08G0107100",null,950.628729322145,989.765804286313,704.297052044552,889.681527268711,"no","OS08G0107100","Os08g0107100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZD72]","Conserved hypothetical protein. (Os08t0107100-01);Similar to predicted protein. (Os08t0107100-02)",8,352087,353810,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0221700-02",0.0841001060284098,0.35612453383319903,-0.349751113317937,"OS03G0221700",null,170.572181797851,164.334132241043,127.020216612813,135.787286019885,"no","OS03G0221700","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q8H821]","Serine/threonine protein kinase-related domain containing protein. (Os03t0221700-02)",3,6377414,6380243,"GO:0006468;GO:0004674;GO:0005886;GO:0030246;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;carbohydrate binding;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0197100-00",0.0844075082832613,0.35648578837022404,0.433498435904197,"OS01G0197100","CYP90D2",79.50180571524,87.4930723898888,110.254672542407,115.272660074435,"no","OS01G0197100","Cytochrome P450 90D2 [Source:UniProtKB/Swiss-Prot;Acc:Q94IW5]","Cytochrome P450, Brassinosteroids biosynthesis, Regulation of plant architecture (Os01t0197100-01);Cytochrome P450 (Splicing variant) (Os01t0197100-02)",1,5236623,5244023,"GO:0016125;GO:0010268;GO:0007275;GO:0006694;GO:0016132;GO:0016709;GO:0006629;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;steroid biosynthetic process;brassinosteroid biosynthetic process;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;lipid metabolic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0465600-01",0.0848853071643882,0.35726903216509,-0.6230717865544511,"OS02G0465600",null,122.310470331139,76.1704394923737,64.3965344052998,64.474538685701,"no","OS02G0465600","Kelch repeat-containing F-box-like protein [Source:UniProtKB/TrEMBL;Acc:Q6K4V7]","Kelch-type beta propeller domain containing protein. (Os02t0465600-01)",2,15659380,15660788]
["OS07T0551400-01",0.0853049741923583,0.35773003499850303,-0.19892126679485403,"OS07G0551400",null,1075.56837433602,1230.62619903243,960.803548782886,1048.3571660433,"no","OS07G0551400","CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q7XHV1]","Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os07t0551400-01);Similar to USP family protein. (Os07t0551400-02)",7,21894865,21898610,"GO:0006950","response to stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS07T0695800-02",0.0852928382988543,0.35773003499850303,-0.10906036515368901,"OS07G0695800",null,3099.94528460043,3251.44141736551,2839.01340363565,3049.9399482863,"no","OS07G0695800","Os07g0695800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3X5]","Similar to 2-oxoglutarate dehydrogenase, E1 component. (Os07t0695800-01);Similar to OSIGBa0096P03.7 protein. (Os07t0695800-02)",7,29656862,29662462,"GO:0006099;GO:0030976;GO:0004591;GO:0055114;GO:0005739;GO:0016624;GO:0008152;GO:0045252","tricarboxylic acid cycle;thiamine pyrophosphate binding;oxoglutarate dehydrogenase (succinyl-transferring) activity;oxidation-reduction process;mitochondrion;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;metabolic process;oxoglutarate dehydrogenase complex","A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. [EC:1.2.4.2];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). [MetaCyc:CPLX66-42, PMID:10848975]"]
["OS01T0686000-01",0.0856518522118829,0.35798021734301605,-0.5888606541922651,"OS01G0686000",null,61.1552351655693,60.7304855412169,36.1010874696378,44.9367996900341,"no","OS01G0686000","Os01g0686000 protein [Source:UniProtKB/TrEMBL;Acc:Q5N7M5]","Similar to cDNA, clone: J100026I16, full insert sequence. (Os01t0686000-01)",1,28289381,28290175]
["OS08T0344300-01",0.0859284100926354,0.358331614314545,-0.17284159595175802,"OS08G0344300",null,3271.77644709693,3386.50721961922,2747.44917299365,3159.07232266427,"no","OS08G0344300","Mitochondrial pyruvate carrier [Source:UniProtKB/TrEMBL;Acc:Q6ZB58]","Uncharacterised protein family UPF0041 domain containing protein. (Os08t0344300-01)",8,15571222,15574549,"GO:0031305;GO:1902361;GO:0006850;GO:0050833;GO:0005743;GO:0005739;GO:0006810","integral component of mitochondrial inner membrane;mitochondrial pyruvate transmembrane transport;mitochondrial pyruvate transport;pyruvate transmembrane transporter activity;mitochondrial inner membrane;mitochondrion;transport","The component of the mitochondrial inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];The directed movement of pyruvate across a mitochondrial membrane. [GOC:dph, GOC:TermGenie, GOC:vw, PMID:22628558];The directed movement of pyruvate, 2-oxopropanoate, into, out of or within a mitochondrion. [GOC:ai];Enables the transfer of pyruvate, 2-oxopropanoate, from one side of the membrane to the other. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS02T0631000-01",0.086213349969148,0.35856115821636403,-0.15980332345453901,"OS02G0631000",null,1677.69195137545,1576.93396354482,1371.84132384624,1541.52760675812,"no","OS02G0631000","Os02g0631000 protein [Source:UniProtKB/TrEMBL;Acc:Q6H475]","Similar to H0322F07.6 protein. (Os02t0631000-01)",2,25231647,25236419,"GO:0071782;GO:0071786;GO:0016020;GO:0016021","endoplasmic reticulum tubular network;endoplasmic reticulum tubular network organization;membrane;integral component of membrane","A subcompartment of the endoplasmic reticulum consisting of tubules having membranes with high curvature in cross-section. [GOC:vw, PMID:16469703, PMID:20434336];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that that has membranes with high curvature in cross-section. [GOC:vw, PMID:16469703, PMID:20434336];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0797700-01",0.0869505567313703,0.35950439375519705,-0.0922088532705959,"OS02G0797700",null,4787.43565954465,4967.54785121886,4419.94395236376,4731.06349780076,"no","OS02G0797700","Transmembrane 9 superfamily member 11 [Source:Projected from Arabidopsis thaliana (AT5G35160) UniProtKB/Swiss-Prot;Acc:Q9FYQ8]","Nonaspanin (TM9SF) family protein. (Os02t0797700-01)",2,33957339,33959749,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0426200-02",0.087179546475994,0.359885083628505,-0.040059539103346496,"OS05G0426200",null,14066.7233420004,14042.1234534454,13774.0284272669,13565.0521846916,"no","OS05G0426200","NAM-like protein [Source:UniProtKB/TrEMBL;Acc:Q60EC0]","No apical meristem (NAM) protein domain containing protein. (Os05t0426200-02)",5,20880323,20884441,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0610400-01",0.0873311645356713,0.35988657311224104,-0.8676476918947731,"OS03G0610400",null,28.590746598429,39.188539305468,17.5626912014454,19.5830482389753,"no","OS03G0610400","C2H2 type zinc finger transcription factor ZFP31 [Source:UniProtKB/TrEMBL;Acc:Q7X850]","Zinc finger, C2H2-like domain containing protein. (Os03t0610400-01)",3,23036335,23037381,"GO:0005634;GO:0003676","nucleus;nucleic acid binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS09T0471550-01",0.0874830183666623,0.36014627945015304,-0.170087897595414,"OS09G0471550",null,578.185480452411,566.023485984372,510.417609670929,506.542194721089,"no","OS09G0471550","Os09g0471550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQZ1]","EGF-like calcium-binding domain containing protein. (Os09t0471550-01)",9,17976511,17979418,"GO:0030247;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0829900-01",0.0880396378433089,0.36085149119785,-0.133262821567693,"OS02G0829900",null,1545.18651463227,1675.74966883222,1420.62657718358,1516.11690541469,"no","OS02G0829900","Probable protein BRICK1 [Source:UniProtKB/Swiss-Prot;Acc:Q84VA7]","Similar to BRICK1. (Os02t0829900-01)",2,35679730,35681439,"GO:0007015;GO:0005856;GO:0005737;GO:0032403;GO:0008064;GO:0048870;GO:0031209;GO:0042802;GO:0000902;GO:0010090;GO:0051259;GO:0005886;GO:0071944","actin filament organization;cytoskeleton;cytoplasm;protein complex binding;regulation of actin polymerization or depolymerization;cell motility;SCAR complex;identical protein binding;cell morphogenesis;trichome morphogenesis;protein oligomerization;plasma membrane;cell periphery","A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:mah];Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah];Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. [GOC:dgh, GOC:dph, GOC:isa_complete, GOC:mlg];A pentameric complex that includes orthologues of human PIR121, Nap1, Abi, SCAR, and HSPC300 and regulates actin polymerization and/or depolymerization through small GTPase mediated signal transduction. [GOC:hla, GOC:pg, PMID:12181570, PMID:24036345, PMID:24630101];Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl];The developmental process in which the size or shape of a cell is generated and organized. [GOC:clt, GOC:dph, GOC:go_curators, GOC:tb];The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators];The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah]"]
["OS06T0176300-00",0.0884604394821793,0.36143235989801503,-0.659219240426784,"OS06G0176300",null,37.2027680590546,43.7465361949444,22.9290690685537,28.3297215437171,"no","OS06G0176300","Os06g0176300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KLM5]","2OG-Fe(II) oxygenase domain containing protein. (Os06t0176300-00)",6,3846106,3848325,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS06T0722650-01",0.088901041086205,0.36212933015248705,0.15218633869262602,"OS06G0722650",null,660.064936203691,644.681179706013,750.903812265286,698.998243259098,"no","OS06G0722650","Os06g0720500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X196]","Similar to Class III homeodomain-leucine zipper protein. (Os06t0722650-01);Similar to CORONA. (Os06t0722650-02)",6,30686334,30692634,"GO:0008289","lipid binding","Interacting selectively and non-covalently with a lipid. [GOC:ai]"]
["OS07T0206600-01",0.0891973244265122,0.362346609810102,-2.50147838865183,"OS07G0206600",null,12.3025736239508,15.4399539511568,1.95141013349393,2.9477992168901,"no","OS07G0206600","Os07g0206600 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIX3]","Similar to Hexose transporter. (Os07t0206600-01)",7,5747394,5749826,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0022891;GO:0022857;GO:0006810;GO:0055085;GO:0005215;GO:0016021;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;substrate-specific transmembrane transporter activity;transmembrane transporter activity;transport;transmembrane transport;transporter activity;integral component of membrane;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0138800-01",0.089242768466674,0.362346609810102,-0.488742709344741,"OS12G0138800",null,102.055907772865,149.148751479117,87.1335599734529,91.8864077949543,"no","OS12G0138800","Protein STRICTOSIDINE SYNTHASE-LIKE 2 [Source:Projected from Arabidopsis thaliana (AT2G41290) UniProtKB/Swiss-Prot;Acc:Q9SLG8]","Six-bladed beta-propeller, TolB-like domain containing protein. (Os12t0138800-01)",12,1882578,1888258,"GO:0016788;GO:0005783;GO:0016020;GO:0016844;GO:0009058;GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016021","hydrolase activity, acting on ester bonds;endoplasmic reticulum;membrane;strictosidine synthase activity;biosynthetic process;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;integral component of membrane","Catalysis of the hydrolysis of any ester bond. [GOC:jl];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine. [EC:4.3.3.2, RHEA:15016];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0533300-01",0.0896704173430261,0.36293745225134,0.0841641885323708,"OS09G0533300",null,1814.27197657855,1846.61849255836,1909.45481562381,1971.3578646628,"no","OS09G0533300","Os09g0533300 protein [Source:UniProtKB/TrEMBL;Acc:Q69SH3]","Metallophosphoesterase domain containing protein. (Os09t0533300-01)",9,20942494,20945847,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0390900-01",0.0903503397387609,0.364464545669882,0.16550740380643703,"OS01G0390900",null,817.187165491702,899.68253803773,915.453964882922,1010.1192227446,"no","OS01G0390900","Os01g0390900 protein [Source:UniProtKB/TrEMBL;Acc:Q5VNG7]","Similar to Dual-specificity protein phosphatase-like protein. (Os01t0390900-01);Similar to Dual specificity protein phosphatase 9. (Os01t0390900-02)",1,16511620,16518660,"GO:0016311;GO:0008138;GO:0006470;GO:0016791","dephosphorylation;protein tyrosine/serine/threonine phosphatase activity;protein dephosphorylation;phosphatase activity","The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [GOC:mah];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg]"]
["OS07T0558800-01",0.0905352938815225,0.364464545669882,-0.0898431363766519,"OS07G0558800",null,1565.88462311973,1583.4039606658,1485.69985495388,1473.4501429928,"no","OS07G0558800","Os07g0558800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z407]","PapD-like domain containing protein. (Os07t0558800-01)",7,22333941,22338268,"GO:0005789","endoplasmic reticulum membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah]"]
["OS04T0419600-01",0.0908901639743959,0.364585828819873,-0.36596641732661905,"OS04G0419600",null,196.714091747735,156.708939940667,138.538135867765,135.700082601006,"no","OS04G0419600","Os04g0419600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WA64]","Histone H3. (Os04t0419600-01)",4,20738833,20740297,"GO:0005694;GO:0000786;GO:0046982;GO:0003677;GO:0005634","chromosome;nucleosome;protein heterodimerization activity;DNA binding;nucleus","A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS01T0767700-02",0.0910935685208825,0.36499550235409906,-2.51224871649666,"OS01G0767700",null,24.7135224161797,30.9182250583341,9.75125428486616,0,"no","OS01G0767700","Os01g0767700 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZAP0]","Similar to DEIH-box RNA/DNA helicase. (Os01t0767700-01);Similar to predicted protein. (Os01t0767700-02);Similar to predicted protein. (Os01t0767700-03)",1,32350513,32360564,"GO:0004386;GO:0003676;GO:0003723;GO:0004004;GO:0005737;GO:0016787;GO:0005524;GO:0000166;GO:0006396;GO:0016020;GO:0016021","helicase activity;nucleic acid binding;RNA binding;ATP-dependent RNA helicase activity;cytoplasm;hydrolase activity;ATP binding;nucleotide binding;RNA processing;membrane;integral component of membrane","Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0110800-01",0.0914111902979397,0.365366475583669,24.78225815856,"OS08G0110800",null,0,7.6284842758995489E-7,10.9372382253818,11.0738402108312,"no","OS08G0110800","Os08g0110800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBI1]","K Homology, type 1, subgroup domain containing protein. (Os08t0110800-01);Hypothetical conserved gene. (Os08t0110800-02);K Homology, type 1, subgroup domain containing protein. (Os08t0110800-03);Conserved hypothetical protein. (Os08t0110800-04);Hypothetical conserved gene. (Os08t0110800-05)",8,572757,578313,"GO:0016020;GO:0016021;GO:0003723;GO:0003676","membrane;integral component of membrane;RNA binding;nucleic acid binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS05T0546800-01",0.0919782779274857,0.36635813872989403,0.10120281523860801,"OS05G0546800",null,1367.8387598699,1384.44920428706,1499.65868759009,1452.63089432784,"no","OS05G0546800","Os05g0546800 protein [Source:UniProtKB/TrEMBL;Acc:Q6L5A2]","Protein of unknown function DUF3615 domain containing protein. (Os05t0546800-01)",5,27139105,27142103]
["OS04T0395600-03",0.0925275344274071,0.36730078979302605,0.0939895783867888,"OS04G0395600",null,2605.87507198128,2778.45102075439,2933.18823750592,2813.59791626359,"no","OS04G0395600","Transport inhibitor response 1-like protein Os04g0395600 [Source:UniProtKB/Swiss-Prot;Acc:Q7XVM8]","Similar to TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat protein 1). (Os04t0395600-01);Similar to TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat protein 1). (Os04t0395600-02);Similar to AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase. (Os04t0395600-03)",4,19453774,19458208,"GO:0019005;GO:0010011;GO:0000822;GO:0016567;GO:0005634;GO:0009734","SCF ubiquitin ligase complex;auxin binding;inositol hexakisphosphate binding;protein ubiquitination;nucleus;auxin-activated signaling pathway","A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). [PMID:15571813, PMID:15688063];Interacting selectively and non-covalently with auxin, plant hormones that regulate aspects of plant growth. [GOC:sm];Interacting selectively and non-covalently with inositol hexakisphosphate. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826]"]
["OS09T0533100-01",0.0926724041985789,0.367582868009219,0.06544423078220969,"OS09G0533100",null,2199.54995812164,2188.35614001063,2281.19844605441,2310.33763623762,"no","OS09G0533100","Pantothenate kinase 2 [Source:Projected from Arabidopsis thaliana (AT4G32180) UniProtKB/Swiss-Prot;Acc:Q8L5Y9]","Similar to Pantothenate kinase 4 (Fragment). (Os09t0533100-01)",9,20929628,20938388,"GO:0015937;GO:0004594;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740;GO:0005829","coenzyme A biosynthetic process;pantothenate kinase activity;phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity;cytosol","The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [ISBN:0198547684];Catalysis of the reaction: ATP + pantothenate = ADP + D-4'-phosphopantothenate. [EC:2.7.1.33];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS02T0832800-01",0.093461972036223,0.36797038268694404,0.10837247606687801,"OS02G0832800",null,1243.19419806327,1236.28740617176,1346.57056261749,1326.33894945985,"no","OS02G0832800","Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Source:Projected from Arabidopsis thaliana (AT4G38240) UniProtKB/Swiss-Prot;Acc:Q9XGM8]","Similar to Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase (EC 2.4.1.101). (Os02t0832800-01);Similar to N-acetylglucosaminyltransferase 1. (Os02t0832800-02)",2,35812603,35818178,"GO:0006486;GO:0008375;GO:0016757;GO:0016740;GO:0003827;GO:0016262;GO:0006491;GO:0006972;GO:0005768;GO:0005794;GO:0005802","protein glycosylation;acetylglucosaminyltransferase activity;transferase activity, transferring glycosyl groups;transferase activity;alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity;protein N-acetylglucosaminyltransferase activity;N-glycan processing;hyperosmotic response;endosome;Golgi apparatus;trans-Golgi network","A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr];Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: 3-(alpha-D-mannosyl)-beta-D-mannosyl-R + UDP-N-acetyl-alpha-D-glucosamine = 3-(2-[N-acetyl-beta-D-glucosaminyl]-alpha-D-mannosyl)-beta-D-mannosyl-R + H(+) + UDP. [EC:2.4.1.101, RHEA:11459];Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + protein = UDP + 4-N-(N-acetyl-D-glucosaminyl)-protein. [EC:2.4.1.94];The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. [ISBN:0879695595, PMID:12736198];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:jl, PMID:12142009];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. [GOC:vw, ISBN:0815316194]"]
["OS04T0483400-01",0.09353364061073549,0.36811023933262804,0.20682154877038803,"OS04G0483400",null,403.553849656074,421.04268932174,500.259744241316,451.44228990684,"no","OS04G0483400","Os04g0483400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBH3]","Similar to H0805A05.2 protein. (Os04t0483400-01)",4,24161435,24165181]
["OS01T0600200-01",0.0936504180060467,0.368380014281027,0.0967334546274938,"OS01G0600200",null,2137.37546903665,2164.68154395219,2219.72902684935,2380.67349662202,"no","OS01G0600200","Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B [Source:UniProtKB/TrEMBL;Acc:A0A0P0V4X3]","Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform. (Os01t0600200-01)",1,23569843,23576519,"GO:0000159;GO:0070262;GO:0000278;GO:0004722;GO:0019888;GO:0005829;GO:0032502;GO:0050790","protein phosphatase type 2A complex;peptidyl-serine dephosphorylation;mitotic cell cycle;protein serine/threonine phosphatase activity;protein phosphatase regulator activity;cytosol;developmental process;regulation of catalytic activity","A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. [GOC:mah, ISBN:0198547684, PMID:17245430];The removal of phosphoric residues from peptidyl-O-phospho-L-serine to form peptidyl-serine. [GOC:bf];Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent. [GOC:mah, ISBN:0815316194, Reactome:69278];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. [GOC:ai];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. [GOC:isa_complete];Any process that modulates the activity of an enzyme. [GOC:ai, GOC:ebc, GOC:vw]"]
["OS02T0280000-01",0.0940366978417156,0.368712678703811,-0.279827101113506,"OS02G0280000",null,245.640194581703,236.745960584405,211.727999484092,185.608520458836,"no","OS02G0280000","Os02g0280000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF35]","Hypothetical gene. (Os02t0280000-01)",2,10351706,10352360,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0682633-01",0.0943927342185622,0.36915599450484204,0.180924951909848,"OS06G0682633",null,548.358608651271,571.278296192803,595.18009071565,674.051995350511,"no","OS06G0682633","Os06g0682633 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X074]","Hypothetical conserved gene. (Os06t0682633-01)",6,28446534,28447986]
["OS10T0199500-01",0.0947852586995929,0.369419469803542,0.162768517206578,"OS10G0199500",null,604.417574219709,639.214093577893,724.948864592996,667.213786702027,"no","OS10G0199500","WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XT55]","Hypothetical conserved gene. (Os10t0199500-01)",10,6946843,6953361,"GO:0006810;GO:0022857;GO:0005886;GO:0055085;GO:0016021;GO:0016020","transport;transmembrane transporter activity;plasma membrane;transmembrane transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0693000-01",0.0951144104915506,0.369762969332232,0.19464357028141702,"OS06G0693000",null,473.719059403191,416.318489393431,498.765230836318,519.830571521258,"no","OS06G0693000","Os06g0693000 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z661]","Protein kinase, core domain containing protein. (Os06t0693000-01)",6,28918691,28923984,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS12T0638700-02",0.0951371082669657,0.369762969332232,-0.24457522956686703,"OS12G0638700",null,3461.40791531383,4227.81273587219,3216.73481287821,3273.46164958048,"no","OS12G0638700","Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:Q8L6I1]","Plasma membrane H+ ATPase (EC 3.6.3.6). (Os12t0638700-01);Similar to N.plumbaginifolia H+-translocating ATPase mRNA. (Os12t0638700-02)",12,27387215,27393762,"GO:0006754;GO:0008553;GO:0015992;GO:1902600;GO:0006810;GO:0016887;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","ATP biosynthetic process;hydrogen-exporting ATPase activity, phosphorylative mechanism;proton transport;hydrogen ion transmembrane transport;transport;ATPase activity;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators, ISBN:0198506732];Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. [EC:3.6.3.6];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0227800-02",0.09563649704144819,0.37041376455395403,-0.0374709192772493,"OS03G0227800",null,12393.2826494826,12930.2660843355,12509.02587943,12165.2658459551,"no","OS03G0227800","Os03g0227800 protein [Source:UniProtKB/TrEMBL;Acc:B7E735]","Conserved hypothetical protein. (Os03t0227800-01);Similar to cDNA clone:001-004-G07, full insert sequence. (Os03t0227800-02);Similar to cDNA clone:001-042-G02, full insert sequence. (Os03t0227800-03)",3,6754275,6756589]
["OS03T0109600-03",0.0959828959960944,0.37071670908236404,0.06933781458633739,"OS03G0109600",null,6323.30724531256,6240.73887867442,6380.62035442992,6802.01636273386,"no","OS03G0109600","Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:Q84VF8]","Similar to Transcription factor homolog BTF3-like protein. (Os03t0109600-01);Similar to transcription factor BTF3. (Os03t0109600-02);Similar to transcription factor BTF3. (Os03t0109600-03)",3,560366,562685,"GO:0006355;GO:0006351","regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0744300-01",0.0964757738450804,0.37123058641433604,-0.0807704196204473,"OS01G0744300",null,3008.68357709206,2924.88146037395,2888.00818998252,2722.48950057023,"no","OS01G0744300","Os01g0744300 protein [Source:UniProtKB/TrEMBL;Acc:Q5JKV9]","Similar to Casein kinase-like protein. (Os01t0744300-01)",1,31111317,31116126,"GO:0008360;GO:0018105;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","regulation of cell shape;peptidyl-serine phosphorylation;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","Any process that modulates the surface configuration of a cell. [GOC:dph, GOC:go_curators, GOC:tb];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS02T0332200-01",0.0967840055763793,0.37134067882389404,0.14590436658192601,"OS02G0332200",null,1196.99820199734,1063.02593569089,1243.88748688565,1256.65747768718,"no","OS02G0332200","T-complex protein 1 subunit delta [Source:UniProtKB/TrEMBL;Acc:Q6YUK5]","Similar to T-complex protein 1 delta subunit. (Os02t0332200-01);Similar to T-complex protein 1, delta subunit. (Os02t0332200-02)",2,13560755,13565938,"GO:0006457;GO:0051082;GO:0005524;GO:0000166;GO:0005832;GO:0006458;GO:0044183;GO:0061077;GO:0005737","protein folding;unfolded protein binding;ATP binding;nucleotide binding;chaperonin-containing T-complex;'de novo' protein folding;protein binding involved in protein folding;chaperone-mediated protein folding;cytoplasm","The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor. [GOC:sgd_curators, PMID:11580267];The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure. [GOC:mb];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding. [GOC:mtg_cambridge_2009];The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS08T0188000-01",0.09697558930717501,0.37134067882389404,0.28887276723491,"OS08G0188000",null,182.446451577282,181.16212636024,221.485050151561,222.730224550604,"no","OS08G0188000","Os08g0188000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCM5]","RNA-binding, CRM domain domain containing protein. (Os08t0188000-01)",8,5147424,5150332,"GO:0008380;GO:0006397;GO:0003723;GO:0005739;GO:0030529","RNA splicing;mRNA processing;RNA binding;mitochondrion;intracellular ribonucleoprotein complex","The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles]"]
["OS12T0225200-01",0.09697369278603,0.37134067882389404,0.194173915561234,"OS12G0225200",null,353.681110040876,352.030950086376,414.674653367461,392.708553812906,"no","OS12G0225200","Os12g0225200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8A9]","Conserved hypothetical protein. (Os12t0225200-01)",12,6811122,6815090]
["OS02T0640300-01",0.09765087668066601,0.37226855646767704,0.22759234708359802,"OS02G0640300",null,296.01884332226,312.090706951023,339.652943564518,372.369932930106,"no","OS02G0640300","Os02g0640300 protein [Source:UniProtKB/TrEMBL;Acc:Q6H7E0]","Similar to Membrane steroid binding protein 1 (AtMP1). (Os02t0640300-01)",2,25696949,25698399,"GO:0020037;GO:0012505;GO:0016020;GO:0016021","heme binding;endomembrane system;membrane;integral component of membrane","Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. [GOC:lh];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0254700-02",0.09793274275572529,0.37251508424712704,0.0149180694393939,"OS03G0254700","TPR3",6192.35956896571,6207.27939997006,6361.39564522908,6167.12597268802,"no","OS03G0254700","Protein TPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q10NY2]","WD40 repeat-like domain containing protein. (Os03t0254700-01);Similar to predicted protein. (Os03t0254700-02)",3,8165827,8174895,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS06T0137166-00",0.0983832838744515,0.37310721682413805,0.44859500689590204,"OS06G0137166",null,109.060169378599,109.109007921508,175.626912014454,122.110868722919,"no","OS06G0137166","Os06g0137166 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WS67]","Hypothetical gene. (Os06t0137166-00)",6,1978441,1981621]
["OS09T0421200-01",0.09873658128396101,0.373360011338256,0.3939927498224,"OS09G0421200",null,106.00240762032,104.991686867867,152.209990412527,125.041529572269,"no","OS09G0421200",null,"Conserved hypothetical protein. (Os09t0421200-01)",9,15212406,15215467,"GO:0003774;GO:0005874;GO:0007018;GO:0008017;GO:0003777;GO:0005524;GO:0000166","motor activity;microtubule;microtubule-based movement;microtubule binding;microtubule motor activity;ATP binding;nucleotide binding","Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS07T0627800-01",0.0988475741679172,0.37366878074464305,0.10098026428228,"OS07G0627800",null,1438.1672803103,1543.99539511568,1573.81227266286,1624.56299748971,"no","OS07G0627800","Os07g0627800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XI68]","Similar to DRG-like OBG family GTpase fused to an RNA binding domain TGS domain, Fun11p. (Os07t0627800-01)",7,26019596,26024727,"GO:0005525","GTP binding","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai]"]
["OS06T0200250-01",0.0994007595385685,0.374786129263525,1.20682201413511,"OS06G0200250",null,3.05776175827846,11.322632897515,16.5869861346984,16.6070781463169,"no","OS06G0200250","Os06g0200250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WU28]","Hypothetical conserved gene. (Os06t0200250-01)",6,5072839,5073861]
["OS06T0367100-02",0.100007666187107,0.37538696815447997,-0.41511957921795906,"OS06G0367100",null,167.149553469068,214.672544935714,161.37077687254,124.979505004028,"no","OS06G0367100","1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:Projected from Arabidopsis thaliana (AT3G20440) UniProtKB/Swiss-Prot;Acc:D2WL32]","Glycoside hydrolase, subgroup, catalytic core domain containing protein. (Os06t0367100-01);Similar to starch branching enzyme III. (Os06t0367100-02)",6,15335687,15365531,"GO:0043169;GO:0016787;GO:0004553;GO:0005975;GO:0003824;GO:0005978;GO:0003844;GO:0009791;GO:0009507;GO:0009536","cation binding;hydrolase activity;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;catalytic activity;glycogen biosynthetic process;1,4-alpha-glucan branching enzyme activity;post-embryonic development;chloroplast;plastid","Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues. [ISBN:0198506732];Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain. [EC:2.4.1.18];The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development. [GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684]"]
["OS05T0419600-01",0.100246291811709,0.375424340300933,-0.12804080456688602,"OS05G0419600",null,1053.90855268664,1133.29262001491,964.97231101275,1036.47705372013,"no","OS05G0419600","Os05g0419600 protein [Source:UniProtKB/TrEMBL;Acc:Q60DW0]","Conserved hypothetical protein. (Os05t0419600-01)",5,20581072,20583157,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0461700-01",0.10051231258880501,0.37574260061199605,0.446493586713519,"OS09G0461700",null,434.202169675542,365.412243510712,455.654266170834,633.999630409393,"no","OS09G0461700","Os09g0461700 protein [Source:UniProtKB/TrEMBL;Acc:Q67IZ8]","Alpha/beta hydrolase fold-3 domain containing protein. (Os09t0461700-01)",9,17458996,17460307,"GO:0009056;GO:0016787;GO:0008152","catabolic process;hydrolase activity;metabolic process","The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS09T0569100-01",0.10092296119250901,0.37611591977964404,0.172450640876079,"OS09G0569100",null,447.050480199781,465.137874548366,513.489322979023,514.520677014754,"no","OS09G0569100","Os09g0569100 protein [Source:UniProtKB/TrEMBL;Acc:Q652P6]","Haloacid dehalogenase-like hydrolase domain containing protein. (Os09t0569100-01)",9,22707659,22709479,"GO:0016791;GO:0005737;GO:0016311;GO:0016787;GO:0008152","phosphatase activity;cytoplasm;dephosphorylation;hydrolase activity;metabolic process","Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS03T0783700-00",0.101125950302864,0.37641325946066,-0.211982544287546,"OS03G0783700",null,2551.15339111847,2843.93230459819,2155.19079138526,2502.65646833901,"no","OS03G0783700","Adapter-related protein complex 1 sigma 1B subunit, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10CG6]","Similar to AP-1 complex subunit sigma-2. (Os03t0783700-00)",3,32513510,32515995,"GO:0008565;GO:0015031;GO:0030117;GO:0016192;GO:0006886;GO:0006810;GO:0016020;GO:0016021","protein transporter activity;protein transport;membrane coat;vesicle-mediated transport;intracellular protein transport;transport;membrane;integral component of membrane","Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0225000-01",0.10140474190982401,0.376579272496527,0.221257107122368,"OS02G0225000",null,333.000354970371,324.230272690294,407.963056097723,358.2028457335,"no","OS02G0225000","Os02g0225000 protein [Source:UniProtKB/TrEMBL;Acc:B7EBN1]","Similar to cDNA clone:001-044-E12, full insert sequence. (Os02t0225000-01)",2,7018719,7024190,"GO:0006810;GO:0016020;GO:0016021","transport;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0599300-01",0.101802153755339,0.37702622228942,-1.8261810466261301,"OS04G0599300","EAT1",10.1925391942615,17.4986144779778,4.87852533373483,2.93066084935005,"no","OS04G0599300","Transcription factor EAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X8R0]","Basic helix-loop-helix transcription factor, Regulator of tapetal programmed cell death, Male reproductive development (Os04t0599300-01)",4,30235422,30238854,"GO:0005634;GO:0048658;GO:0009555;GO:0005515;GO:0007275;GO:0046983;GO:0006355;GO:0006351;GO:0043068","nucleus;anther wall tapetum development;pollen development;protein binding;multicellular organism development;protein dimerization activity;regulation of transcription, DNA-templated;transcription, DNA-templated;positive regulation of programmed cell death","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process whose specific outcome is the progression of the anther wall tapetum over time, from its formation to the mature structure. [GOC:jid, GOC:sm, GOC:tb];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]"]
["OS02T0269000-01",0.10245762464448,0.378143818019671,-0.161918884757102,"OS02G0269000",null,618.687129091676,686.563285694774,578.593104580951,588.085943769576,"no","OS02G0269000","Os02g0269000 protein [Source:UniProtKB/TrEMBL;Acc:Q6ERT7]","Protein of unknown function DUF502 family protein. (Os02t0269000-01)",2,9617858,9623804,"GO:0005794;GO:0016020;GO:0016021","Golgi apparatus;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0660000-01",0.10280078756487201,0.378607685249154,-0.468679886768029,"OS04G0660000",null,93.938312708818,80.8834739372682,55.6370676778125,70.6936170424819,"no","OS04G0660000","Os04g0660000 protein [Source:UniProtKB/TrEMBL;Acc:Q8S3N7]","Similar to OSIGBa0132E09-OSIGBa0108L24.22 protein. (Os04t0660000-01)",4,33676329,33676925]
["OS05T0274300-01",0.10334392253153,0.37946285183586803,0.125362731035457,"OS05G0274300",null,784.825517958139,837.874834416111,894.721546206969,875.290707005881,"no","OS05G0274300","Os05g0274300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ATE2]","Similar to ATP binding protein. (Os05t0274300-01)",5,11200391,11206218,"GO:0005525;GO:0016020;GO:0016021","GTP binding;membrane;integral component of membrane","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0534000-01",0.10334872971086201,0.37946285183586803,0.11938378964070301,"OS12G0534000",null,909.17449612813,973.746429186291,1004.00051368263,1041.36148846905,"no","OS12G0534000","Os12g0534000 protein [Source:UniProtKB/TrEMBL;Acc:Q0IMW8]","Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25). (Os12t0534000-01)",12,21230590,21232506,"GO:0019632;GO:0009423;GO:0004764;GO:0009570;GO:0055114","shikimate metabolic process;chorismate biosynthetic process;shikimate 3-dehydrogenase (NADP+) activity;chloroplast stroma;oxidation-reduction process","The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids. [CHEBI:36208, GOC:sm, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds. [GOC:sm, ISBN:0198547684];Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+. [EC:1.1.1.25];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS03T0177400-02",0.103781087601615,0.379876420075258,0.0441425124912117,"OS03G0177400","REFA1",46577.354442739,44324.3681381469,46868.5985414008,46857.4555654951,"no","OS03G0177400","Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:Q10QZ6]","EF-1 alpha. (Os03t0177400-01);Similar to Elongation factor 1-alpha. (Os03t0177400-02)",3,4094567,4097436,"GO:0006414;GO:0003746;GO:0005737;GO:0005525;GO:0003924;GO:0005622;GO:0006412;GO:0000166","translational elongation;translation elongation factor activity;cytoplasm;GTP binding;GTPase activity;intracellular;translation;nucleotide binding","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS09T0422550-00",0.104101307529171,0.38000684809760604,2.64637279269654,"OS09G0422550",null,0,3.56563174230304,8.572823837048709,13.7512822474335,"no","OS09G0422550","Os09g0422550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQT8]","Hypothetical protein. (Os09t0422550-00)",9,15281516,15285525]
["OS02T0307200-01",0.10440376580485601,0.38027466057104903,0.16354107973974202,"OS02G0307200",null,751.084100002944,696.031851969392,851.800417065575,769.017024332507,"no","OS02G0307200","Os02g0307200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VI72]","Similar to transducin family protein / WD-40 repeat family protein. (Os02t0307200-01)",2,12054771,12057601]
["OS04T0452500-00",0.10492738302886201,0.38094929765670504,0.5888553837380951,"OS04G0452500","ZEP1",38.7316489381939,33.967898692545,55.6151888045771,53.7287822380842,"no","OS04G0452500","Synaptonemal complex protein ZEP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FAD5]","Similar to H0505F09.1 protein. (Os04t0452500-00)",4,22582841,22592982,"GO:0000795;GO:0007131;GO:0051321;GO:0005515;GO:0005694;GO:0005634;GO:0007129;GO:0016020;GO:0016021;GO:0000802","synaptonemal complex;reciprocal meiotic recombination;meiotic cell cycle;protein binding;chromosome;nucleus;synapsis;membrane;integral component of membrane;transverse filament","A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other.  Transverse filaments connect the lateral elements to the central element. [DOI:10.5772/29752, GOC:elh];The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779];Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Synapsis begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete. [GOC:mtg_cell_cycle, PMID:22582262, PMID:23117617];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them. [GOC:elh]"]
["OS12T0233300-01",0.10510195216465401,0.38111176801217506,0.47159953543888306,"OS12G0233300",null,54.0204577295862,74.1117789655528,98.5462117414437,79.1278429324513,"no","OS12G0233300","Histidine triad family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QVE2]","Histidine triad (HIT) protein family protein. (Os12t0233300-01)",12,7293407,7298321,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0201100-01",0.10534441164963401,0.38124644216058,0.8808828468510471,"OS01G0201100",null,16.3597463072486,15.4627564839362,31.2225621359029,27.3786356362505,"no","OS01G0201100","Os01g0201100 protein [Source:UniProtKB/TrEMBL;Acc:B7FAK0]","Similar to xylosyltransferase oxt. (Os01t0201100-01)",1,5507567,5509494,"GO:0008375;GO:0016020;GO:0016021","acetylglucosaminyltransferase activity;membrane;integral component of membrane","Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0632100-01",0.105738850757518,0.381709141245541,0.563507544876169,"OS12G0632100",null,43.8279185353246,38.0852197461869,64.3965344052998,56.6594430874342,"no","OS12G0632100","Os12g0632100 protein [Source:UniProtKB/TrEMBL;Acc:Q0ILQ1]","Similar to ARL2 G-protein. (Os12t0632100-01)",12,27061650,27063765]
["OS10T0430800-01",0.10600140819506201,0.38179389585753704,0.0952354117418949,"OS10G0430800",null,1086.07766834244,1069.88033016258,1176.39895372136,1126.68098006064,"no","OS10G0430800","Os10g0430800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUG4]","Hypothetical conserved gene. (Os10t0430800-01);Conserved hypothetical protein. (Os10t0430800-02)",10,15338211,15341263]
["OS08T0116566-00",0.106488400272745,0.382199283491412,0.31569269357384805,"OS08G0116566",null,383.239473704234,288.212473754928,429.310229368665,406.384971109873,"no","OS08G0116566","Os08g0116566 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XB32]","Hypothetical conserved gene. (Os08t0116566-00)",8,906858,908370]
["OS03T0177500-01",0.10687333623771701,0.38262605648393405,-0.019069906263965198,"OS03G0177500","REFA1",32768.1421804389,34765.3530766374,32825.993241812,33820.7011631023,"no","OS03G0177500","Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:Q10QZ6]","EF-1 alpha. (Os03t0177500-01)",3,4099985,4102960,"GO:0003924;GO:0003746;GO:0005622;GO:0006414;GO:0005525;GO:0005737;GO:0006412;GO:0000166","GTPase activity;translation elongation factor activity;intracellular;translational elongation;GTP binding;cytoplasm;translation;nucleotide binding","Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS06T0558766-00",0.10729234952204601,0.38285501614980605,0.266132022257453,"OS06G0558766",null,202.831529965805,223.364667160069,273.197418689151,239.33730269692,"no","OS06G0558766","Os06g0558766 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXU0]","Similar to predicted protein. (Os06t0558766-00)",6,21346272,21350292,"GO:0043631;GO:0016779;GO:0004652;GO:0005634","RNA polyadenylation;nucleotidyltransferase activity;polynucleotide adenylyltransferase activity;nucleus","The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule. [GOC:jl];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group. [EC:2.7.7.19];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS04T0641450-00",0.10734136334529601,0.38289472655288903,0.616702380022152,"OS04G0641450",null,474.743013637511,838.542708450419,1087.38919084772,926.358880414081,"no","OS04G0641450","Os04g0641450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFP7]","Hypothetical gene. (Os04t0641450-00)",4,32634186,32636438]
["OS10T0369000-01",0.107827996520806,0.383823731736433,0.139964243172885,"OS10G0369000",null,711.905573510778,738.380436876785,817.150410998622,780.887555879134,"no","OS10G0369000","Glutamyl-tRNA synthetase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8S5M6]","Similar to Glutamyl-tRNA synthetase. (Os10t0369000-01);Similar to glutamyl-tRNA synthetase, cytoplasmic. (Os10t0369000-02)",10,11581310,11585280,"GO:0006418;GO:0004812;GO:0006412;GO:0005737;GO:0000166;GO:0005524;GO:0016876;GO:0043039;GO:0016874;GO:0004818;GO:0006424","tRNA aminoacylation for protein translation;aminoacyl-tRNA ligase activity;translation;cytoplasm;nucleotide binding;ATP binding;ligase activity, forming aminoacyl-tRNA and related compounds;tRNA aminoacylation;ligase activity;glutamate-tRNA ligase activity;glutamyl-tRNA aminoacylation","The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound. [EC:6.1.1, GOC:mah];The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. [GOC:ma, GOC:mah, MetaCyc:Aminoacyl-tRNAs];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). [EC:6.1.1.17];The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510]"]
["OS07T0564800-01",0.10824619979213301,0.38405759208414,0.18603408505433802,"OS07G0564800",null,394.451266817922,378.793536935048,418.577473634449,461.090640297741,"no","OS07G0564800","Os07g0564800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIK6]","Protein of unknown function DUF707 family protein. (Os07t0564800-01)",7,22648366,22654350,"GO:0005840;GO:0005622;GO:0006412;GO:0003735;GO:0016020;GO:0016021","ribosome;intracellular;translation;structural constituent of ribosome;membrane;integral component of membrane","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0679700-03",0.10883859681223801,0.38508822348668,-0.512880378245096,"OS01G0679700",null,2642.55154997183,3639.6409751117,2554.51032211257,1848.1873467108,"no","OS01G0679700","60S ribosomal protein L37a-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DKK1]","Similar to 60S ribosomal protein L37a. (Os01t0679700-02);Similar to 60S ribosomal protein L37a. (Os01t0679700-03)",1,27965722,27968107,"GO:0005840;GO:0005622;GO:0006412;GO:0003735;GO:0030529;GO:0046872","ribosome;intracellular;translation;structural constituent of ribosome;intracellular ribonucleoprotein complex;metal ion binding","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS01T0841700-01",0.10934878043546901,0.385777833800992,-0.431971349929652,"OS01G0841700",null,178.369435899577,166.751502672494,102.449032008432,153.371251115986,"no","OS01G0841700",null,"Similar to Isoform ERG1b of Elicitor-responsive protein 1. (Os01t0841700-01)",1,36135911,36137281,"GO:0005544;GO:0006952;GO:0005737;GO:0005886;GO:0016020","calcium-dependent phospholipid binding;defense response;cytoplasm;plasma membrane;membrane","Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. [GOC:jl];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0577150-00",0.109345115609061,0.385777833800992,2.18512713138619,"OS03G0577150",null,7.79374594391078,0,17.5852046879522,17.8581691680551,"no","OS03G0577150","Os03g0577150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZI4]","Hypothetical gene. (Os03t0577150-00)",3,21108805,21112091]
["OS06T0606100-01",0.10976667477611901,0.38604713339012203,0.024446059815931002,"OS06G0606100",null,1953.63957923933,1986.99788249302,2015.26714476948,1992.71223891463,"no","OS06G0606100","Os06g0514700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXE8]","Hypothetical conserved gene. (Os06t0606100-01)",6,24069342,24072302]
["OS02T0757900-01",0.110147648622283,0.386452797508954,-0.28769513008685804,"OS02G0757900",null,595.369044400283,676.917602830322,533.402951827573,508.866731319533,"no","OS02G0757900","Os02g0757900 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z7V3]","Similar to Poly(A)-binding protein II-like. (Os02t0757900-01);Similar to Polyadenylate-binding protein 2. (Os02t0757900-02)",2,31916115,31920601,"GO:0003723;GO:0003676;GO:1904247","RNA binding;nucleic acid binding;positive regulation of polynucleotide adenylyltransferase activity","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any process that activates or increases the frequency, rate or extent of polynucleotide adenylyltransferase activity. [GO_REF:0000059, GOC:kmv, GOC:TermGenie, PMID:19460348]"]
["OS02T0596900-01",0.110652732568876,0.38689335277911,0.128717562699413,"OS02G0596900","ARP3",1021.29242726501,1067.41548315664,1081.08121395564,1202.5478351833,"no","OS02G0596900","Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6K908]","Actin/actin-like family protein. (Os02t0596900-01)",2,23177585,23182048,"GO:0007015;GO:0003779;GO:0005856;GO:0005885;GO:0034314;GO:0005737;GO:0007275;GO:0005524;GO:0000166;GO:0000902;GO:0009825;GO:0010090;GO:0005829","actin filament organization;actin binding;cytoskeleton;Arp2/3 protein complex;Arp2/3 complex-mediated actin nucleation;cytoplasm;multicellular organism development;ATP binding;nucleotide binding;cell morphogenesis;multidimensional cell growth;trichome morphogenesis;cytosol","A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah];Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. [GOC:clt];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. [GOC:jl, GOC:vw, PMID:12479800];The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. [GOC:mah, PMID:16959963, PMID:18640983];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The developmental process in which the size or shape of a cell is generated and organized. [GOC:clt, GOC:dph, GOC:go_curators, GOC:tb];The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. [ISBN:0943088399];The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0177200-01",0.111069822292298,0.3876727488341,0.0807130614876752,"OS01G0177200",null,2105.77859753443,2183.20948869358,2342.66786525947,2193.11120226362,"no","OS01G0177200","Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:Q5VRV7]","Similar to Ubiquitin-specific protease 14. (Os01t0177200-01)",1,3986647,3995398,"GO:0036459;GO:0004843;GO:0016579;GO:0006511;GO:0046872;GO:0006508;GO:0016787;GO:0008234;GO:0008233;GO:0008270","thiol-dependent ubiquitinyl hydrolase activity;thiol-dependent ubiquitin-specific protease activity;protein deubiquitination;ubiquitin-dependent protein catabolic process;metal ion binding;proteolysis;hydrolase activity;cysteine-type peptidase activity;peptidase activity;zinc ion binding","Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. [EC:3.4.19.12, GOC:bf, GOC:ka];Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. [GOC:jh2, ISBN:0120793709];The removal of one or more ubiquitin groups from a protein. [GOC:ai];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0679000-01",0.111377801152142,0.38784495592467105,0.0725106530239897,"OS03G0679000",null,1376.8782001229,1373.98208607279,1447.2915413527,1445.36196399097,"no","OS03G0679000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10F72]","Vacuolar import and degradation protein Vid24 domain containing protein. (Os03t0679000-01)",3,26885838,26888287,"GO:0043161;GO:0019898;GO:0006623;GO:0031410;GO:0034657;GO:0005773;GO:0007039;GO:0045721","proteasome-mediated ubiquitin-dependent protein catabolic process;extrinsic component of membrane;protein targeting to vacuole;cytoplasmic vesicle;GID complex;vacuole;protein catabolic process in the vacuole;negative regulation of gluconeogenesis","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. [GOC:dos, GOC:jl, GOC:mah];The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];A protein complex with ubiquitin ligase activity that is involved in proteasomal degradation of fructose-1,6-bisphosphatase (FBPase) and phosphoenolpyruvate carboxykinase during the transition from gluconeogenic to glycolytic growth conditions. In S. cerevisiae, the GID (Glucose Induced degradation Deficient) complex consists of Vid30p, Rmd5p, Vid24p, Vid28p, Gid7p, Gid8p, and Fyv10p. [PMID:12686616, PMID:18508925];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a protein in the vacuole, usually by the action of vacuolar proteases. [GOC:mah, GOC:vw];Any process that stops, prevents, or reduces the frequency, rate or extent of gluconeogenesis. [GOC:go_curators]"]
["OS05T0163100-01",0.111632833296293,0.38784495592467105,0.146098346045652,"OS05G0163100",null,804.018366055431,747.670394955014,818.600110638301,898.456441052477,"no","OS05G0163100","Os05g0163100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WIF4]","Similar to PHD finger protein. (Os05t0163100-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0163100-02)",5,3697765,3702359,"GO:0042393;GO:0016569;GO:0046872;GO:0005634;GO:0006355;GO:0006351","histone binding;covalent chromatin modification;metal ion binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. [GOC:mah, GOC:vw];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0585100-01",0.11182056992497101,0.388088384908295,0.13310209139439502,"OS01G0585100",null,833.749706090594,938.749200230336,967.899426212991,975.910062833566,"no","OS01G0585100","Os01g0585100 protein [Source:UniProtKB/TrEMBL;Acc:Q94D47]","Similar to Integral membrane protein. (Os01t0585100-01)",1,22742545,22747123,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0438400-01",0.112314806668225,0.388699815737154,0.9070858581944461,"OS08G0438400",null,14.2695548719662,18.5279447413882,40.986255013906,20.5173804510981,"no","OS08G0438400","Os08g0438400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGE2]","Similar to ZF-HD homeobox protein. (Os08t0438400-01)",8,21307601,21309069,"GO:0046872;GO:0003677;GO:0005634;GO:0006355;GO:0006351","metal ion binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS06T0103900-01",0.11265750554085101,0.38926529901398504,0.110865642371438,"OS06G0103900",null,821.388495866839,863.048704564189,930.977069132761,888.006214748476,"no","OS06G0103900","Dehydration-responsive protein-like [Source:UniProtKB/TrEMBL;Acc:Q5VRG9]","Protein of unknown function DUF248, methyltransferase putative family protein. (Os06t0103900-01)",6,271908,275436,"GO:0032259;GO:0008757;GO:0005737;GO:0008168;GO:0016020;GO:0016021","methylation;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;methyltransferase activity;membrane;integral component of membrane","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0151600-00",0.113293271147424,0.38992002862825803,-0.47558495269390805,"OS02G0151600",null,83.9610123577128,84.2341736343252,53.154393647075,67.8074020034865,"no","OS02G0151600","Os02g0151600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VEU1]","Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase). (Os02t0151600-00)",2,2846549,2847428,"GO:0009082;GO:0016853;GO:0016491;GO:0055114;GO:0016020;GO:0016021","branched-chain amino acid biosynthetic process;isomerase activity;oxidoreductase activity;oxidation-reduction process;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [CHEBI:22918, GOC:ai];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0244300-01",0.113347639842597,0.38992002862825803,-0.20503457471345302,"OS07G0244300",null,318.00722286096,332.473675081577,278.075944022886,286.227876286521,"no","OS07G0244300","Organic solute transporter-like [Source:UniProtKB/TrEMBL;Acc:Q8H5Q5]","Protein of unknown function DUF300 family protein. (Os07t0244300-01)",7,8037505,8042731,"GO:0005215;GO:0006810;GO:0016021;GO:0016020","transporter activity;transport;integral component of membrane;membrane","Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0608800-01",0.113891103764527,0.39067720563240504,0.131390713144955,"OS07G0608800",null,579.069754246379,619.673038946124,652.914260335936,660.127549282247,"no","OS07G0608800","Peroxisome biogenesis factor 10 [Source:Projected from Arabidopsis thaliana (AT2G26350) UniProtKB/Swiss-Prot;Acc:Q9SYU4]","Similar to Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10) (Pex10p) (PER8). (Os07t0608800-01)",7,25039237,25043732,"GO:0005778;GO:0005779;GO:0007031;GO:0016558;GO:0008270;GO:0004842;GO:0006513;GO:0006635;GO:0009793;GO:0009853;GO:0010381;GO:0005777;GO:0005829","peroxisomal membrane;integral component of peroxisomal membrane;peroxisome organization;protein import into peroxisome matrix;zinc ion binding;ubiquitin-protein transferase activity;protein monoubiquitination;fatty acid beta-oxidation;embryo development ending in seed dormancy;photorespiration;attachment of peroxisome to chloroplast;peroxisome;cytosol","The lipid bilayer surrounding a peroxisome. [GOC:mah];The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:mah];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah];The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:0716731363, PMID:11687502, PMID:11988772];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Addition of a single ubiquitin group to a protein. [GOC:ai];A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:0198506732, MetaCyc:FAO-PWY];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu];A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:0198506732];The process in which a peroxisome is transported to, and/or maintained in, a location adjacent to the chloroplast. [PMID:17215364];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS04T0474800-02",0.114124415240325,0.390716410306127,-0.30584555568501903,"OS04G0474800",null,2891.785490321,3401.30429451437,2256.09503212502,2834.81288436356,"no","OS04G0474800",null,"Similar to OSIGBa0135C13.7 protein. (Os04t0474800-01);Similar to Isoform 2 of Beta-glucosidase 12. (Os04t0474800-02);Similar to OSIGBa0135C13.7 protein. (Os04t0474800-03)",4,23747601,23752765,"GO:0004553;GO:0005975","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS05T0135900-01",0.114590994465634,0.391113135637053,0.17327490102008,"OS05G0135900",null,517.780991068486,468.345269851758,580.544514714445,531.426500682142,"no","OS05G0135900","Os05g0135900 protein [Source:UniProtKB/TrEMBL;Acc:Q75L44]","Spectrin repeat containing protein. (Os05t0135900-01)",5,2100668,2104847]
["OS12T0503000-03",0.11481180905246201,0.39127367802801605,0.337813824020937,"OS12G0503000",null,1364.15885638792,1342.40763615569,1462.99757170771,1957.66940452664,"no","OS12G0503000","Os12g0503000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QQ90]","Similar to Allantoin permease. (Os12t0503000-01);Similar to Ureide permease 4. (Os12t0503000-03);Similar to Ureide permease 4. (Os12t0503000-04);Similar to Allantoin permease. (Os12t0503000-05)",12,19180665,19185915,"GO:0071705;GO:0016021;GO:0016020","nitrogen compound transport;integral component of membrane;membrane","The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:51143, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0147000-01",0.11537735283144901,0.391883839809596,-0.0616501018044924,"OS11G0147000",null,2174.10868127,2300.41506547209,2118.26154361754,2169.08202557614,"no","OS11G0147000","AMP-binding enzyme family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAL6]","Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os11t0147000-01)",11,2131922,2141236,"GO:0008152;GO:0003824","metabolic process;catalytic activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0121100-01",0.115723030504601,0.39214396938515506,-0.20641420423545,"OS12G0121100",null,1421.52315220239,1460.78342426489,1368.01142477838,1130.0511079709,"no","OS12G0121100","Os12g0121100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTH7]","Similar to Serine/threonine-protein kinase NAK. (Os12t0121100-01)",12,991532,994692,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0292900-01",0.11589812636419401,0.392247857168775,0.600287418696396,"OS03G0292900",null,33.6353793410631,18.5279447413882,39.0282026698787,40.0523649411173,"no","OS03G0292900","Os03g0292900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWC2]","Similar to Importin-beta N-terminal domain containing protein. (Os03t0292900-01)",3,10191730,10202345,"GO:0008565;GO:0005829;GO:0008536;GO:0006886;GO:0005634;GO:0005635;GO:0042991","protein transporter activity;cytosol;Ran GTPase binding;intracellular protein transport;nucleus;nuclear envelope;transcription factor import into nucleus","Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). [ISBN:0198547684];The directed movement of a transcription factor from the cytoplasm to the nucleus. [GOC:jl]"]
["OS01T0958700-01",0.11622446027027102,0.39249361226675505,0.0616652561033596,"OS01G0958700",null,1841.14549750729,1941.90976611754,1983.21016822908,1965.05013511902,"no","OS01G0958700","Os01g0958700 protein [Source:UniProtKB/TrEMBL;Acc:Q5JN47]","Membrane attack complex component/perforin/complement C9 family protein. (Os01t0958700-01)",1,42260316,42264854]
["OS08T0407600-01",0.11665554669083901,0.393018457379577,-0.565219063498416,"OS08G0407600",null,443.503066566437,469.284703042535,224.00094395073,392.909212291237,"no","OS08G0407600","Os08g0407600 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z9W8]","Protein of unknown function DUF581 family protein. (Os08t0407600-01)",8,19490442,19491638]
["OS09T0473300-01",0.117076754241568,0.39341136439093105,-0.13291143710595202,"OS09G0473300",null,761.382677811337,756.557743606685,726.90027472649,657.444917204194,"no","OS09G0473300","Os09g0473300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPM5]","Similar to Methylcytosine binding domain protein. (Os09t0473300-01)",9,18085556,18087723,"GO:0003676;GO:0003677","nucleic acid binding;DNA binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0620100-01",0.11751226623841601,0.393866592989971,0.10469555038974701,"OS01G0620100",null,995.811079279353,1079.76744631757,1124.01223689251,1107.78980105432,"no","OS01G0620100","Protein SEH1 [Source:Projected from Arabidopsis thaliana (AT1G64350) UniProtKB/Swiss-Prot;Acc:Q93VR9]","WD40 repeat-like domain containing protein. (Os01t0620100-01)",1,24703771,24708911,"GO:0005635","nuclear envelope","The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). [ISBN:0198547684]"]
["OS03T0397500-01",0.11748123475291701,0.393866592989971,-0.12310743932477801,"OS03G0397500",null,1018.23466550673,1118.88199632717,1011.8061542166,950.510990719759,"no","OS03G0397500","Os03g0397500 protein [Source:UniProtKB/TrEMBL;Acc:Q84MU4]","WD40 repeat-like domain containing protein. (Os03t0397500-01)",3,16065907,16069194,"GO:0000398;GO:0071013","mRNA splicing, via spliceosome;catalytic step 2 spliceosome","The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890]"]
["OS12T0428600-02",0.117926025081677,0.394058396401115,0.0213515667365165,"OS12G0428600",null,3638.13882362139,3841.42555740233,3821.65309568793,3769.43037319621,"no","OS12G0428600","Os12g0428600 protein [Source:UniProtKB/TrEMBL;Acc:Q0INM5]","Similar to E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-) (Ubiquitin-protein ligase 2). (Os12t0428600-01);Similar to predicted protein. (Os12t0428600-02)",12,13697949,13702555,"GO:0061630;GO:0005737;GO:0016567;GO:0004842;GO:0016874;GO:0006511;GO:0016740","ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;ubiquitin-protein transferase activity;ligase activity;ubiquitin-dependent protein catabolic process;transferase activity","Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0564700-01",0.118405149498954,0.39458730327623603,0.0247905448499684,"OS07G0564700",null,4392.98439272672,4683.45269851758,4661.91880891701,4571.83092498607,"no","OS07G0564700","Os07g0564700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7K0]","Similar to ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding. (Os07t0564700-01)",7,22634760,22637290,"GO:0043547;GO:0032012;GO:0005086","positive regulation of GTPase activity;regulation of ARF protein signal transduction;ARF guanyl-nucleotide exchange factor activity","Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Any process that modulates the frequency, rate or extent of ARF protein signal transduction. [GOC:mah];Stimulates the exchange of guanyl nucleotides associated with the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. [GOC:mah]"]
["OS02T0136966-01",0.11869532355443901,0.39482556682379305,0.551742067373857,"OS02G0136966",null,49.6628784204041,33.2560715092067,66.4053901086352,55.1417390923814,"no","OS02G0136966","Os02g0136966 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VEP9]","Hypothetical gene. (Os02t0136966-01)",2,1955909,1960166]
["OS03T0262400-01",0.11927895044865201,0.3956568106028,-0.0493411805524218,"OS03G0262400","NCBP",2216.87727475189,2165.7108742156,2064.59192123658,2170.6428024186,"no","OS03G0262400","Eukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q10NQ9]","Similar to Eukaryotic translation initiation factor 4E type 3 (eIF4E type 3) (eIF-4E type 3) (mRNA cap-binding protein type 3) (Novel cap-binding protein) (nCBP). (Os03t0262400-01)",3,8597173,8600595,"GO:0006417;GO:0006413;GO:0003743;GO:0003723;GO:0006412;GO:0005737;GO:0005829","regulation of translation;translational initiation;translation initiation factor activity;RNA binding;translation;cytoplasm;cytosol","Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0128800-01",0.119676398759854,0.39593311162613704,-0.0707279798221139,"OS01G0128800",null,1790.82913643175,1725.15752147592,1628.45175640069,1719.32103161869,"no","OS01G0128800","Os01g0128800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UY24]","Similar to plant synaptotagmin. (Os01t0128800-01)",1,1598995,1605729,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0807900-01",0.11981588049783201,0.396202369759914,-0.562747328564361,"OS02G0807900",null,66.2515047627,105.988012285923,61.4694192050589,55.138749031062,"no","OS02G0807900","Os02g0807900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VR62]","Conserved hypothetical protein. (Os02t0807900-01)",2,34516622,34519474,"GO:0030247","polysaccharide binding","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah]"]
["OS11T0104240-00",0.12010173614883,0.39663024178545303,-2.3898515424768,"OS11G0104240",null,7.39359832392826,7.54942346291355,0,2.85115895395184,"no","OS11G0104240","Os11g0104240 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XY67]","Similar to CsAtPR5. (Os11t0104240-00)",11,174544,178191]
["OS03T0702700-01",0.12073063896637601,0.397183787234465,0.45280885034379204,"OS03G0702700",null,86.5659769368968,116.734705109199,118.975834386385,159.282308244992,"no","OS03G0702700","Os03g0702700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W205]","Protein of unknown function DUF250 domain containing protein. (Os03t0702700-01);Similar to organic anion transporter. (Os03t0702700-02);Similar to organic anion transporter. (Os03t0702700-03)",3,28229114,28233929,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0363850-00",0.121215329922239,0.39756541399369505,0.5116906972538331,"OS03G0363850",null,58.3997908154086,51.3113102326544,90.519636788424,65.8976765197084,"no","OS03G0363850","Os03g0363850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KHA9]","Hypothetical protein. (Os03t0363850-00)",3,14178178,14180594,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0507400-01",0.12153614037780301,0.39793935921365803,-0.16331461158965502,"OS09G0507400",null,538.166069457009,508.489150124765,440.042985102882,494.58987660443,"no","OS09G0507400","Os09g0507400 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0I6]","Conserved hypothetical protein. (Os09t0507400-01)",9,19671252,19673388,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0314800-01",0.12220182159124202,0.39896679435193505,0.18885016300033802,"OS03G0314800","NIN1",439.298439272672,525.987764602743,549.321952578542,550.964239677809,"no","OS03G0314800","Neutral/alkaline invertase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q10MC0]","Plant neutral invertase family protein. (Os03t0314800-01)",3,11283343,11287893,"GO:0004575;GO:0004564;GO:0033926;GO:0008152;GO:0016798;GO:0005975;GO:0005739;GO:0016787;GO:0005987;GO:0003824","sucrose alpha-glucosidase activity;beta-fructofuranosidase activity;glycopeptide alpha-N-acetylgalactosaminidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;mitochondrion;hydrolase activity;sucrose catabolic process;catalytic activity","Catalysis of the reaction: sucrose + H2O = alpha-D-glucose + beta-D-fructose. [EC:3.2.1.48, MetaCyc:RXN-1461];Catalysis of the reaction: a fructofuranosylated fructofuranosyl acceptor + H2O = a non fructofuranosylated fructofuranosyl acceptor + a beta-D-fructofuranoside. [EC:3.2.1.26, MetaCyc:RXN-9985];Catalysis of the reaction: D-galactosyl-3-(N-acetyl-alpha-D-galactosaminyl)-L-serine + H2O = D-galactosyl-3-N-acetyl-alpha-D-galactosamine + L-serine. [EC:3.2.1.97, MetaCyc:3.2.1.97-RXN];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS03T0802300-03",0.12219864514259401,0.39896679435193505,0.10100037918498801,"OS03G0802300",null,926.118805429258,890.196585646345,982.667393352016,965.361556961089,"no","OS03G0802300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q84SZ4]","Hypothetical conserved gene. (Os03t0802300-01);Conserved hypothetical protein. (Os03t0802300-02);Hypothetical conserved gene. (Os03t0802300-03)",3,33474343,33480206]
["OS09T0481300-01",0.12260389128712101,0.399334744067294,-0.0875950441585298,"OS09G0481300",null,1137.48737407959,1113.73534501011,1024.49032008432,1094.11338375735,"no","OS09G0481300","Os09g0481300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XN73]","Similar to Rwp34 (Fragment). (Os09t0481300-01)",9,18470587,18473910,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0358000-01",0.12317140484438101,0.39995034124833,-0.407191771121555,"OS04G0358000",null,846.601886320372,632.958416267039,493.101971999538,622.619351542675,"no","OS04G0358000","Os04g0358000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W8W7]","Similar to OSIGBa0104J13.1 protein. (Os04t0358000-01)",4,17108109,17110621,"GO:0051539;GO:0006281;GO:0016491;GO:0055114;GO:0003824;GO:0016020;GO:0016021","4 iron, 4 sulfur cluster binding;DNA repair;oxidoreductase activity;oxidation-reduction process;catalytic activity;membrane;integral component of membrane","Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0624600-01",0.123642234035786,0.40013540284700805,-0.650894268365458,"OS03G0624600",null,107.804131229247,109.672217782247,46.5281137584908,91.9794003267694,"no","OS03G0624600","No apical meristem, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q75LG2]","No apical meristem (NAM) protein domain containing protein. (Os03t0624600-01)",3,23734580,23736562,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0414500-00",0.123866934938958,0.400448477382127,1.32275896140983,"OS08G0414500",null,11.2117931136877,2.05866052682091,15.6112810679515,17.5839650961003,"no","OS08G0414500","Os08g0414500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPU9]","Hypothetical conserved gene. (Os08t0414500-00)",8,19814567,19815027,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS03T0651100-01",0.12411327087392202,0.40064894126864903,-0.175503818374592,"OS03G0651100",null,974.406746971403,1110.64735421988,879.110265139017,967.118080285515,"no","OS03G0651100","Os03g0651100 protein [Source:UniProtKB/TrEMBL;Acc:Q53KX4]","Peptidase S54, rhomboid domain containing protein. (Os03t0651100-01)",3,25279444,25286387,"GO:0006508;GO:0004252;GO:0016021;GO:0016020","proteolysis;serine-type endopeptidase activity;integral component of membrane;membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0697800-01",0.12452837735706901,0.400652844500265,-0.23862838528266103,"OS02G0697800","SCAMP5",1935.56319299027,2255.26260713231,1632.35457666768,1919.58285632428,"no","OS02G0697800","Secretory carrier-associated membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z8F5]","Similar to Secretory carrier-associated membrane protein 5. (Os02t0697800-01)",2,28696678,28700365,"GO:0030658;GO:0031410;GO:0015031;GO:0005886;GO:0006810;GO:0016021;GO:0016020","transport vesicle membrane;cytoplasmic vesicle;protein transport;plasma membrane;transport;integral component of membrane;membrane","The lipid bilayer surrounding a transport vesicle. [GOC:mah];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0405700-02",0.12435952126860701,0.400652844500265,0.0452870078402069,"OS12G0405700",null,3574.36906301549,3831.19843223988,3782.57200921635,3859.14749116686,"no","OS12G0405700","Os12g0405700 protein [Source:UniProtKB/TrEMBL;Acc:Q0INR8]","Similar to Wound-induced basic protein. (Os12t0405700-01);Similar to Wound-induced basic protein. (Os12t0405700-02)",12,12240426,12242537,"GO:0009735;GO:0005829;","response to cytokinin;cytosol;","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];"]
["OS11T0605300-01",0.125008728158806,0.401079611697683,-0.159219215552756,"OS11G0605300",null,481.087849969145,466.286609324937,439.067280036135,409.315631959223,"no","OS11G0605300","Os11g0605300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y460]","Conserved hypothetical protein. (Os11t0605300-01)",11,23346655,23348579]
["OS01T0821600-01",0.126256379498142,0.40167457535544304,0.46864507230573704,"OS01G0821600",null,55.0397116490123,62.7891460680378,72.2021749392756,90.8504863298514,"no","OS01G0821600","Os01g0821600 protein [Source:UniProtKB/TrEMBL;Acc:Q8RV01]","WRKY transcription factor 48-like protein (WRKY transcription factor 21). (Os01t0821600-01)",1,35062738,35064472,"GO:0003700;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS04T0447100-01",0.12593414578282902,0.40167457535544304,-0.6052490475259931,"OS04G0447100",null,67.9818686539521,76.1068403053157,33.1739722693969,61.543877836351,"no","OS04G0447100","Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WB12]","Similar to Lipoxygenase. (Os04t0447100-01)",4,22305669,22309225,"GO:0016165;GO:0006631;GO:0006629;GO:0031408;GO:0006633;GO:0051213;GO:0016702;GO:0046872;GO:0055114;GO:0016491","linoleate 13S-lipoxygenase activity;fatty acid metabolic process;lipid metabolic process;oxylipin biosynthetic process;fatty acid biosynthetic process;dioxygenase activity;oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;metal ion binding;oxidation-reduction process;oxidoreductase activity","Catalysis of the reaction: linoleate + O2 = (9Z,11E)-(13S)-13-hydroperoxyoctadeca-9,11-dienoate. [EC:1.13.11.12, GOC:lb];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS09T0501850-01",0.12556154536459,0.40167457535544304,-0.0567064488694603,"OS09G0501850",null,2373.84237834351,2432.30741243891,2230.46178258357,2390.44236611985,"no","OS09G0501850","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A3C0C6]","Similar to FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-1). (Os09t0501850-01)",9,19415497,19417999,"GO:0061077;GO:0005528;GO:0003755;GO:0005737;GO:0000413;GO:0016853","chaperone-mediated protein folding;FK506 binding;peptidyl-prolyl cis-trans isomerase activity;cytoplasm;protein peptidyl-prolyl isomerization;isomerase activity","The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506. [GOC:jl];Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). [EC:5.2.1.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732]"]
["OS10T0577700-01",0.125705906934172,0.40167457535544304,0.273800076676377,"OS10G0577700",null,197.735260368674,184.250117150472,207.825179217104,253.990606943671,"no","OS10G0577700","Probable inactive shikimate kinase like 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G35500) UniProtKB/Swiss-Prot;Acc:O82290]","CS domain containing protein. (Os10t0577700-01)",10,23032206,23034966,"GO:0000287;GO:0009507","magnesium ion binding;chloroplast","Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS03T0743500-01",0.126620753491818,0.40170866352690404,-0.6789706191207181,"OS03G0743500","CML4",34.6313008881634,43.9087102873924,31.3129072433241,17.7440306391052,"no","OS03G0743500","Calmodulin-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84MN0]","Calcium-binding EF-hand domain containing protein. (Os03t0743500-01);Similar to Calmodulin 1 (Fragment). (Os03t0743500-02)",3,30517480,30519662,"GO:0005509;GO:0046872","calcium ion binding;metal ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS12T0574800-02",0.12678419208121902,0.401767352371097,0.157067181193592,"OS12G0574800",null,371.861805351591,375.107425602532,419.661803046087,413.22243946029,"no","OS12G0574800","Bromodomain associated family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN90]","Conserved hypothetical protein. (Os12t0574800-02);Bromodomain transcription factor domain containing protein. (Os12t0574800-03)",12,23725985,23729782]
["OS07T0618800-01",0.127293751904135,0.40231692588418305,0.0389402139894372,"OS07G0618800",null,2591.96271710071,2618.6161901162,2589.52124714645,2763.61318093709,"no","OS07G0618800","Os07g0618800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNV5]","Similar to caltractin. (Os07t0618800-01)",7,25540492,25542689,"GO:0005509;GO:0046872","calcium ion binding;metal ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS06T0730600-01",0.12771167987370902,0.40254278793991,0.00294755811501375,"OS06G0730600",null,3252.90781519329,3259.73617251161,3158.93164326298,3367.03187452394,"no","OS06G0730600","Os06g0730600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z417]","Peptidase S9A, prolyl oligopeptidase family protein. (Os06t0730600-01)",6,31136693,31145705,"GO:0005737;GO:0008236;GO:0070008;GO:0004252;GO:0006508","cytoplasm;serine-type peptidase activity;serine-type exopeptidase activity;serine-type endopeptidase activity;proteolysis","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#EXOPEPTIDASE, ISBN:0716720094];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS08T0243600-01",0.127840040511723,0.40262579514630303,0.08705924217508709,"OS08G0243600",null,979.503016568534,990.215713400859,1013.7575643501,1078.48319256082,"no","OS08G0243600","Os08g0243600 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXR4]","Haloacid dehalogenase-like hydrolase domain containing protein. (Os08t0243600-01)",8,8767789,8771574,"GO:0005737;GO:0016311;GO:0016787;GO:0008152;GO:0016020;GO:0016021;GO:0043136;GO:0006114","cytoplasm;dephosphorylation;hydrolase activity;metabolic process;membrane;integral component of membrane;glycerol-3-phosphatase activity;glycerol biosynthetic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: glycerol 3-phosphate + H2O = glycerol + phosphate. [GOC:jl];The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:ai, ISBN:0198506732]"]
["OS04T0583200-01",0.128379738220485,0.403371836223389,0.48036574868367105,"OS04G0583200",null,154.486919291596,146.740325795292,253.616614329167,166.624702983516,"no","OS04G0583200","Os04g0583200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WE31]","Conserved hypothetical protein. (Os04t0583200-01)",4,29465920,29467005]
["OS02T0440000-02",0.12881392825935,0.40391359051539205,-0.0123021153303611,"OS02G0440000","LYSA",2272.58604972789,2380.43549265626,2309.53613720385,2303.97695612604,"no","OS02G0440000","Probable diaminopimelate decarboxylase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6ZG77]","Similar to Diaminopimelate decarboxylase. (Os02t0440000-01);Similar to cDNA clone:J013098O07, full insert sequence. (Os02t0440000-02)",2,14124447,14132084,"GO:0009089;GO:0008836;GO:0003824;GO:0016831;GO:0008652;GO:0009536;GO:0009507;GO:0016829;GO:0009085","lysine biosynthetic process via diaminopimelate;diaminopimelate decarboxylase activity;catalytic activity;carboxy-lyase activity;cellular amino acid biosynthetic process;plastid;chloroplast;lyase activity;lysine biosynthetic process","The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. [GOC:go_curators];Catalysis of the reaction: meso-2,6-diaminopimelate + H(+) = L-lysine + CO(2). [EC:4.1.1.20, RHEA:15104];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid. [GOC:go_curators]"]
["OS10T0159800-04",0.12925558263078102,0.404322367209543,0.014335732092055001,"OS10G0159800",null,2539.93532853316,2647.54391100419,2603.2499354969,2636.03305875698,"no","OS10G0159800","Alcohol dehydrogenase 2, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10A46]","Alcohol dehydrogenase superfamily, zinc-containing protein. (Os10t0159800-01);Similar to Alcohol dehydrogenase 2. (Os10t0159800-03);Similar to Alcohol dehydrogenase 2. (Os10t0159800-04)",10,3793940,3803819,"GO:0046872;GO:0016491;GO:0055114;GO:0008270","metal ion binding;oxidoreductase activity;oxidation-reduction process;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS04T0649100-02",0.129645277790109,0.40467128392352,-0.10401059225855501,"OS04G0649100",null,1539.11463938645,1438.67644045728,1448.83941400852,1321.82493466704,"no","OS04G0649100","Os04g0649100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFX1]","Similar to cDNA clone:J023121E19, full insert sequence. (Os04t0649100-01);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os04t0649100-02);APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development (Os04t0649100-03)",4,33071622,33075371,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0576700-01",0.13011715694169101,0.40510948526266605,-0.007828763721182,"OS12G0576700",null,1813.67218304182,1746.77437986096,1760.10763792478,1781.07054041601,"no","OS12G0576700","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q2QN73]","Similar to Diphosphonucleotide phosphatase 1 precursor. (Os12t0576700-01)",12,23810618,23814363,"GO:0003993;GO:0016311;GO:0046872;GO:0016787","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS12T0270900-02",0.13025160290256202,0.405321549386746,-2.16179894018988,"OS12G0270900",null,49.2097708337061,34.39499265197,8.94299784509296,9.74078009672151,"no","OS12G0270900","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:Q2QU81]","Sulfotransferase family protein. (Os12t0270900-01);Similar to cDNA clone:J023121F12, full insert sequence. (Os12t0270900-02)",12,9821581,9823929,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0499100-00",0.13062595976785202,0.405370760724137,1.18074174095453,"OS06G0499100",null,10.1925391942615,6.17598158046274,12.6841658677106,24.4221737445837,"no","OS06G0499100","Os06g0499100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXC2]","Hypothetical conserved gene. (Os06t0499100-00)",6,17565550,17566140]
["OS02T0657000-01",0.13091291346761602,0.405490364295771,0.48792974417462703,"OS02G0657000",null,50.9626959713077,33.967898692545,58.542304004818,60.5669908865676,"no","OS02G0657000","Os02g0657000 protein [Source:UniProtKB/TrEMBL;Acc:Q6H6G4]","AP2 domain-containing protein Rap211. (Os02t0657000-01)",2,26550965,26552002,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0637800-02",0.13136394887375902,0.405849779280599,0.128989612287434,"OS02G0637800",null,503.276904615098,509.518480388176,563.957528579747,543.562161691001,"no","OS02G0637800","Os02g0637800 protein [Source:UniProtKB/TrEMBL;Acc:Q6H5V9]","Hypothetical conserved gene. (Os02t0637800-01);Protein of unknown function DUF639 family protein. (Os02t0637800-02)",2,25569174,25574908,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS03T0309800-01",0.13170819649532,0.40607649695965203,0.55341646790106,"OS03G0309800",null,59.2387231142054,56.2884216186665,69.8409767910357,99.7016848217286,"no","OS03G0309800","Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G06430) UniProtKB/Swiss-Prot;Acc:Q9SQU6]","Similar to PPR2. (Os03t0309800-01);Similar to PPR2. (Os03t0309800-02)",3,11048496,11053446,"GO:0009451;GO:0004519;GO:0003723;GO:0009507;GO:0090305;GO:0019843;GO:0009553;GO:0009555;GO:0009793;GO:0048868","RNA modification;endonuclease activity;RNA binding;chloroplast;nucleic acid phosphodiester bond hydrolysis;rRNA binding;embryo sac development;pollen development;embryo development ending in seed dormancy;pollen tube development","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with ribosomal RNA. [GOC:jl];The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu];The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure. [GOC:isa_complete]"]
["OS05T0238200-01",0.13187903112423,0.40625318244833203,-0.0343254674681859,"OS05G0238200",null,1776.51699836299,1713.11242058141,1707.79869726823,1699.78329262303,"no","OS05G0238200","E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q60EU0]","Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). (Os05t0238200-01)",5,8440438,8445684,"GO:0061630;GO:0016874;GO:0016567;GO:0007275;GO:0006511;GO:0046872;GO:0005634;GO:0008270","ubiquitin protein ligase activity;ligase activity;protein ubiquitination;multicellular organism development;ubiquitin-dependent protein catabolic process;metal ion binding;nucleus;zinc ion binding","Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS05T0573200-00",0.13224077153605202,0.40654256912552306,-0.276202209851722,"OS05G0573200",null,869.596937653747,1057.00421042455,726.193230600731,864.720626831822,"no","OS05G0573200","Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:Q65XK3]","Similar to Isocitrate dehydrogenase (Fragment). (Os05t0573200-00)",5,28547571,28551291,"GO:0006102;GO:0004450;GO:0006099;GO:0051287;GO:0016616;GO:0000287;GO:0055114;GO:0046872;GO:0016491","isocitrate metabolic process;isocitrate dehydrogenase (NADP+) activity;tricarboxylic acid cycle;NAD binding;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;magnesium ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity","The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. [EC:1.1.1.42];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS03T0599600-01",0.13307073227521202,0.40765837887017803,-0.433315216635463,"OS03G0599600",null,153.907341833349,191.455428994345,151.23428534578,104.526903626818,"no","OS03G0599600","Os03g0599600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W020]","Regulator of chromosome condensation, RCC1 domain containing protein. (Os03t0599600-01)",3,22372945,22380120]
["OS02T0175900-02",0.133573422693912,0.407950185544092,0.21324838990604603,"OS02G0175900",null,493.848124998883,553.957835029646,577.617399514204,637.099367846206,"no","OS02G0175900","Os02g0175900 protein [Source:UniProtKB/TrEMBL;Acc:Q6EUQ4]","Mitotic checkpoint protein PRCC, C-terminal domain containing protein. (Os02t0175900-01);Mitotic checkpoint protein PRCC, C-terminal domain containing protein. (Os02t0175900-02)",2,4144343,4147044]
["OS10T0520600-01",0.13359476083674,0.407950185544092,0.0518227041938628,"OS10G0520600",null,1185.37901367628,1150.92773263652,1202.34014277258,1219.41400073804,"no","OS10G0520600","Plant UBX domain-containing protein 10 [Source:Projected from Arabidopsis thaliana (AT4G10790) UniProtKB/Swiss-Prot;Acc:Q9M0N1]","UBX domain containing protein. (Os10t0520600-01);Similar to fas-associated factor 1-like protein. (Os10t0520600-02)",10,20135412,20139742,"GO:0005886;","plasma membrane;","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];"]
["OS12T0571200-01",0.134032100796598,0.40837741339147104,0.017756739519752398,"OS12G0571200","TIM9",1678.71120529488,1654.1337333006,1652.84438306936,1721.27480551826,"no","OS12G0571200","Mitochondrial import inner membrane translocase subunit Tim9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGX7]","Similar to Mitochondrial import inner membrane translocase subunit Tim9. (Os12t0571200-01)",12,23516655,23518441,"GO:0008565;GO:0015031;GO:0005743;GO:0005739;GO:0046872;GO:0006810;GO:0016020;GO:0045039;GO:0072321;GO:0042719;GO:0042721","protein transporter activity;protein transport;mitochondrial inner membrane;mitochondrion;metal ion binding;transport;membrane;protein import into mitochondrial inner membrane;chaperone-mediated protein transport;mitochondrial intermembrane space protein transporter complex;mitochondrial inner membrane protein insertion complex","Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane. [GOC:mcc, GOC:vw, PMID:18672008];The directed movement of proteins into, out of or within a cell, or between cells, mediated by chaperone molecules that bind to the transported proteins. [GOC:mah, PMID:20378773];Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane. [PMID:12581629];A multi-subunit complex embedded in the mitochondrial inner membrane that mediates insertion of carrier proteins into the inner membrane. [PMID:12191765]"]
["OS12T0608600-02",0.13452963705391602,0.408888725753206,-1.89797803288956E-3,"OS12G0608600",null,3524.28626213864,3572.24963350992,3415.43314685183,3671.77283988623,"no","OS12G0608600","Sulfurtransferase [Source:UniProtKB/TrEMBL;Acc:Q0IM09]","Similar to Thiosulfate sulfurtransferase (EC 2.8.1.1) (Mercaptopyruvate sulfurtransferase Mst2/Rdh2) (EC 2.8.1.2). (Os12t0608600-01);Sulfurtransferase (Os12t0608600-02)",12,25702077,25706956,"GO:0004792;GO:0016740","thiosulfate sulfurtransferase activity;transferase activity","Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate. [EC:2.8.1.1, RHEA:16884];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0750800-02",0.13463957344469302,0.40901941412769904,-0.218190758950342,"OS01G0750800",null,2524.72103711201,2402.32761638528,1895.38989072769,2340.11207499176,"no","OS01G0750800","Os01g0750800 protein [Source:UniProtKB/TrEMBL;Acc:Q5JN54]","Conserved hypothetical protein. (Os01t0750800-02)",1,31487114,31490168,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0746800-01",0.13536714548752402,0.409453912390887,0.0739134150649399,"OS03G0746800",null,979.503016568534,1040.65289630797,1080.10550888889,1046.24592321797,"no","OS03G0746800","tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit [Source:UniProtKB/TrEMBL;Acc:Q94GP6]","WD-40 repeat containing protein. (Os03t0746800-01)",3,30701249,30704661,"GO:0005829;GO:0005634;GO:0008033;GO:0030488;GO:0008176;GO:0036265;GO:0043527;GO:0106004;GO:0006400;GO:0008618","cytosol;nucleus;tRNA processing;tRNA methylation;tRNA (guanine-N7-)-methyltransferase activity;RNA (guanine-N7)-methylation;tRNA methyltransferase complex;tRNA (guanine-N7)-methylation;tRNA modification;7-methylguanosine metabolic process","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah];Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N7-methylguanine. [EC:2.1.1.33];The addition of a methyl group to the N7 atom in the base portion of a guanine nucleotide residue in an RNA molecule. [GOC:BHF, GOC:rl];A multimeric protein complex involved in the methylation of specific nucleotides in tRNA. [GOC:jl];The process whereby a guanine in a tRNA is methylated at the N7 position of guanine. [GOC:hjd, PMID:17382321];The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. [GOC:curators];The chemical reactions and pathways involving 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA. [ISBN:0198506732]"]
["OS04T0415000-01",0.135420105412547,0.40951747605306804,-0.006524792862199291,"OS04G0415000",null,1596.15163782136,1567.66999117412,1562.10381186189,1587.44129339794,"no","OS04G0415000","OJ991214_12.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XTG2]","Similar to H0622F05.5 protein. (Os04t0415000-01)",4,20508625,20509566]
["OS07T0454100-01",0.135912823389534,0.40968893119236,-0.14336682838154,"OS07G0454100",null,523.896514585043,541.4277185539,508.34233977517,456.206205548824,"no","OS07G0454100","Os07g0454100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KND7]","Conserved hypothetical protein. (Os07t0454100-01)",7,15721894,15723077,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS07T0511900-01",0.13623985434656102,0.40996750024585205,0.049000146401625096,"OS07G0511900",null,2360.59207739097,2273.7905518737,2478.2908695373,2316.19895793632,"no","OS07G0511900","Os07g0511900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6B9]","Conserved hypothetical protein. (Os07t0511900-01)",7,19593342,19595214]
["OS02T0114700-01",0.136263258970222,0.40998733626835504,0.0901152404476936,"OS02G0114700",null,972.368239132551,932.573218649873,1047.90724168624,979.817610632699,"no","OS02G0114700","Os02g0114700 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z7B7]","Similar to Phosphorylation regulatory protein HP-10. (Os02t0114700-01)",2,785945,789191,"GO:0030490;GO:0042274;GO:0090502;GO:0046872;GO:0030688;GO:0000469;GO:0004521;GO:0006364;GO:0009553;GO:0009555;GO:0005737","maturation of SSU-rRNA;ribosomal small subunit biogenesis;RNA phosphodiester bond hydrolysis, endonucleolytic;metal ion binding;preribosome, small subunit precursor;cleavage involved in rRNA processing;endoribonuclease activity;rRNA processing;embryo sac development;pollen development;cytoplasm","Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule. [GOC:curators];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. [GOC:jl];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit. [PMID:10567516];Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. [GOC:curators];Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. [GOC:mah, ISBN:0198547684];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0425800-00",0.136842246151539,0.41072839222141905,-1.96724055635808,"OS09G0425800",null,11.1701843705984,5.44931453237153,0,4.25029925588783,"no","OS09G0425800","Os09g0425800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XNL0]","Hypothetical protein. (Os09t0425800-00)",9,15439590,15439904]
["OS08T0236900-01",0.13718232664385402,0.410885101044056,-0.217339042172908,"OS08G0236900",null,271.121542567357,286.153813228107,256.610432554452,222.730224550604,"no","OS08G0236900","Os08g0236900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDF3]","Conserved hypothetical protein. (Os08t0236900-01)",8,8307815,8311773]
["OS01T0801700-01",0.137758574251913,0.410899436180638,0.100254078845578,"OS01G0801700",null,914.27076572526,838.904164679522,965.948016079497,913.389298047431,"no","OS01G0801700","Mucin-like protein [Source:UniProtKB/TrEMBL;Acc:Q8S2G4]","Homolog of Arabidopsis GCD1 (GAMETE CELLS DEFECTIVE1), Early embryogenesis and endosperm development (Os01t0801700-01)",1,33956754,33960102]
["OS06T0504900-00",0.13754059785344902,0.410899436180638,1.10477117844522,"OS06G0504900",null,31.5968715022108,9.2639723706941,35.1253824028908,52.7518952883008,"no","OS06G0504900","Os06g0504900 protein [Source:UniProtKB/TrEMBL;Acc:Q654W7]","Similar to WRKY transcription factor 31. (Os06t0504900-00)",6,17915923,17917083,"GO:0003700;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0883850-00",0.13823812393405402,0.41110658451408805,1.90322193130757,"OS01G0883850",null,7.11427947172934,0,12.0475806142413,14.563212061121,"no","OS01G0883850","Os01g0883850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VBD8]","Hypothetical protein. (Os01t0883850-00)",1,38382586,38383358]
["OS04T0678000-01",0.138255853877018,0.41110658451408805,-0.432167445580636,"OS04G0678000",null,88.7684279481758,76.3358793633691,60.8227633075625,61.543877836351,"no","OS04G0678000","Os04g0678000 protein [Source:UniProtKB/TrEMBL;Acc:Q0J904]","Hypothetical protein. (Os04t0678000-01)",4,34639558,34640487]
["OS08T0149100-01",0.138755059155822,0.41170910919548703,0.43056389323480204,"OS08G0149100",null,73.3862821986831,62.7891460680378,101.473326941685,82.0585037818013,"no","OS08G0149100","Os08g0149100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBR7]","Conserved hypothetical protein. (Os08t0149100-01)",8,2816443,2818078]
["OS01T0832300-00",0.13962815444931,0.412235541152552,-0.071154931992953,"OS01G0832300","CPK3",1693.41356366693,1802.71858780528,1610.0106061412,1717.87256444077,"no","OS01G0832300","Calcium-dependent protein kinase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPZ7]","Similar to Calcium-dependent protein kinase. (Os01t0832300-00)",1,35619733,35625793,"GO:0046777;GO:0009738;GO:0009931;GO:0005516;GO:0004683;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0005886;GO:0016310;GO:0016301;GO:0005509;GO:0046872;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016740","protein autophosphorylation;abscisic acid-activated signaling pathway;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;plasma membrane;phosphorylation;kinase activity;calcium ion binding;metal ion binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;transferase activity","The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0459800-04",0.139472872100413,0.412235541152552,-0.09223225503168289,"OS09G0459800",null,1679.67561952741,1840.31470964368,1607.34409028188,1694.65382675715,"no","OS09G0459800","Os09g0459800 protein [Source:UniProtKB/TrEMBL;Acc:Q67J16]","Similar to ARP protein. (Os09t0459800-01);Similar to ARP protein. (Os09t0459800-02);Similar to NADPH oxidoreductase homolog (Fragment). (Os09t0459800-03);Similar to predicted protein. (Os09t0459800-04)",9,17377010,17388858,"GO:0016491;GO:0055114;GO:0008270;;GO:0006979;GO:0005739;GO:0005777","oxidoreductase activity;oxidation-reduction process;zinc ion binding;;response to oxidative stress;mitochondrion;peroxisome","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS04T0459800-02",0.139926651652953,0.412358256337707,0.141196368499926,"OS04G0459800",null,380.181711945955,373.646885617996,419.090403390708,412.246292808573,"no","OS04G0459800","ATP-dependent RNA helicase SUV3L, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q7X745]","Similar to H0219H12.4 protein. (Os04t0459800-01);DEAD-like helicase, N-terminal domain containing protein. (Os04t0459800-02)",4,22947880,22951872,"GO:0016817;GO:0006401;GO:0016887;GO:0003724;GO:0004004;GO:0005759;GO:0032508;GO:0004386;GO:0005739;GO:0016787;GO:0005634;GO:0005524;GO:0000166;GO:0045025;GO:0042645;GO:1902584;GO:1901002;GO:0080038;GO:0010929;GO:0009939;GO:0009651;GO:0000965;GO:0003678","hydrolase activity, acting on acid anhydrides;RNA catabolic process;ATPase activity;RNA helicase activity;ATP-dependent RNA helicase activity;mitochondrial matrix;DNA duplex unwinding;helicase activity;mitochondrion;hydrolase activity;nucleus;ATP binding;nucleotide binding;mitochondrial degradosome;mitochondrial nucleoid;positive regulation of response to water deprivation;positive regulation of response to salt stress;positive regulation of cytokinin-activated signaling pathway;positive regulation of auxin mediated signaling pathway;positive regulation of gibberellic acid mediated signaling pathway;response to salt stress;mitochondrial RNA 3'-end processing;DNA helicase activity","Catalysis of the hydrolysis of any acid anhydride. [GOC:jl];The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. [ISBN:0198506732];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix. [GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A mitochondrial protein complex with 3' to 5' exoribonuclease activity that participates in intron-independent turnover and processing of mitochondrial transcripts. In humans, the mitochondrial degradosome is a pentameric complex, and in yeast it exists as a heterodimer. [PMID:10397341, PMID:9829834];The region of a mitochondrion to which the DNA is confined. [GOC:jl];Any process that activates or increases the frequency, rate or extent of response to water deprivation. [GO_REF:0000058, GOC:TermGenie, PMID:24198318];Any process that activates or increases the frequency, rate or extent of response to salt stress. [GOC:TermGenie, PMID:22627139];Any process that activates or increases the frequency, rate or extent of cytokinin signaling. [GOC:dhl];Any process that increases the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin. [GOC:dph, GOC:tb];Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity. [GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion. [GOC:krc, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah]"]
["OS01T0303200-01",0.140417482147982,0.41282091171912605,-0.11900807925862601,"OS01G0303200",null,759.344169972485,817.284166967584,692.750597390346,759.041159981662,"no","OS01G0303200","Os01g0303200 protein [Source:UniProtKB/TrEMBL;Acc:Q657I0]","Conserved hypothetical protein. (Os01t0303200-01)",1,11211855,11221413,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0511600-01",0.14063511082253402,0.41322214905270904,0.0427258777371273,"OS10G0511600",null,1184.36472769545,1225.92428058556,1220.60561116938,1262.13238637802,"no","OS10G0511600","Os10g0511600 protein [Source:UniProtKB/TrEMBL;Acc:Q337C4]","Similar to prolyl carboxypeptidase like protein. (Os10t0511600-01)",10,19687251,19692164,"GO:0006508;GO:0008236;GO:0004180;GO:0008239","proteolysis;serine-type peptidase activity;carboxypeptidase activity;dipeptidyl-peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain. [GOC:mb]"]
["OS09T0241100-01",0.141162183347775,0.413849522634021,-0.181554844869859,"OS09G0241100",null,395.470520737348,461.156042622131,392.199398159927,363.132948080242,"no","OS09G0241100","Os09g0241100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKM1]","Similar to nucleotide binding. (Os09t0241100-01)",9,3120345,3125131]
["OS03T0193700-00",0.14184275342584,0.41388939168355204,0.422252335624388,"OS03G0193700",null,71.4408128153813,52.697650364523,82.3312889090031,84.0164811233025,"no","OS03G0193700","Os03g0193700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VU37]","Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein. (Os03t0193700-00)",3,4888551,4889232,"GO:0004663;GO:0018344;GO:0005968","Rab geranylgeranyltransferase activity;protein geranylgeranylation;Rab-protein geranylgeranyltransferase complex","Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family. [EC:2.5.1.60, GOC:mah, PMID:8621375];The covalent attachment of a geranylgeranyl group to a protein. [GOC:jl];A heterodimeric enzyme complex, which in mammals is composed of an alpha and a beta subunit, and which associates with an accessory protein Rep (Rab escort protein). Catalyzes of the transfer of a geranyl-geranyl group from geranylgeranyl pyrophosphate to a Rab protein. [GOC:jl, PMID:11886217]"]
["OS07T0475400-01",0.14186556588703902,0.41388939168355204,-0.128016688580907,"OS07G0475400","EXLA3",463.751992267335,439.524022476265,414.239708410859,412.33785966156,"no","OS07G0475400","Expansin-like A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H274]","Similar to Expansin-like protein A (Fragment). (Os07t0475400-01)",7,17162250,17165698,"GO:0005576","extracellular region","The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS11T0191300-03",0.14165981438434902,0.41388939168355204,0.204252459575227,"OS11G0191300",null,370.920628436433,329.998366224631,436.389416458364,371.131808882182,"no","OS11G0191300","Os11g0191300 protein [Source:UniProtKB/TrEMBL;Acc:B7EHL9]","Similar to MEI1 protein. (Os11t0191300-01);Similar to BRCA1 C Terminus domain containing protein, expressed. (Os11t0191300-02);Similar to BRCA1 C Terminus domain containing protein, expressed. (Os11t0191300-03)",11,4614154,4623369]
["OS05T0594900-01",0.14212538454946,0.41390734667973306,0.0390494136292664,"OS05G0594900",null,2628.63765965675,2505.29483313551,2726.09404811337,2548.69624797075,"no","OS05G0594900","Os05g0594900 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKF9]","Similar to U6 snRNA-associated Sm-like protein LSm8. (Os05t0594900-01)",5,29623082,29625108,"GO:0046540;GO:0005688;GO:0071011;GO:0000398;GO:0003723;GO:0030529","U4/U6 x U5 tri-snRNP complex;U6 snRNP;precatalytic spliceosome;mRNA splicing, via spliceosome;RNA binding;intracellular ribonucleoprotein complex","A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. [GOC:krc, GOC:pr, PMID:11867543];A ribonucleoprotein complex that contains small nuclear RNA U6. [GOC:krc, GOC:mah];A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, PMID:18322460, PMID:19239890];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles]"]
["OS04T0105400-01",0.14252866313652,0.41418401299634905,0.14118819887408401,"OS04G0105400",null,414.836345206445,458.051967217653,477.119777639267,485.512814042324,"no","OS04G0105400","Os04g0105400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W5Y3]","Similar to B0616E02-H0507E05.3 protein. (Os04t0105400-01)",4,357603,360450,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0169100-02",0.142948390754773,0.414332146107008,-0.009667601387162541,"OS04G0169100","ETR2",2536.0244198803,2463.97549582786,2565.44489013854,2401.1616834441,"no","OS04G0169100","Ethylene receptor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XX84]","Similar to Ethylene receptor-like protein 1. (Os04t0169100-01);Ethylene receptor, Ethylene response, Floral transition and starch accumulation (Os04t0169100-02)",4,4738375,4742148,"GO:0009873;GO:0000160;GO:0004673;GO:0005789;GO:0005783;GO:0018106;GO:0006468;GO:0016310;GO:0016301;GO:0023014;GO:0000155;GO:0046872;GO:0005524;GO:0000166;GO:0016020;GO:0016021;GO:0016740;GO:0038199;GO:0051740;GO:0010105;GO:0050896;GO:0004674;GO:0006355;GO:0009723;GO:2000904","ethylene-activated signaling pathway;phosphorelay signal transduction system;protein histidine kinase activity;endoplasmic reticulum membrane;endoplasmic reticulum;peptidyl-histidine phosphorylation;protein phosphorylation;phosphorylation;kinase activity;signal transduction by protein phosphorylation;phosphorelay sensor kinase activity;metal ion binding;ATP binding;nucleotide binding;membrane;integral component of membrane;transferase activity;ethylene receptor activity;ethylene binding;negative regulation of ethylene-activated signaling pathway;response to stimulus;protein serine/threonine kinase activity;regulation of transcription, DNA-templated;response to ethylene;regulation of starch metabolic process","A series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription. [GOC:jy, PMID:24012247];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine. [EC:2.7.13.3, GOC:mah];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine). [RESID:AA0035, RESID:AA0036];The process of introducing a phosphate group on to a protein. [GOC:hb];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Combining with ethylene and transmitting the signal in the cell to initiate a change in cell activity. [GOC:signaling, PMID:22467798, PMID:24012247];Interacting selectively and non-covalently with ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. [GOC:ai];Any process that stops or prevents ethylene (ethene) signal transduction. [GOC:tb];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. [GOC:ai, GOC:bf];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl];Any process that modulates the frequency, rate or extent of starch metabolic process. [GOC:obol]"]
["OS11T0474800-01",0.14335730540465702,0.41460512221709805,-1.12943379674086,"OS11G0474800",null,686.977141693228,314.9750606036,142.452939745057,315.534484780022,"no","OS11G0474800","Os11g0474800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y285]","Similar to Isoform 2 of Stemar-13-ene synthase. (Os11t0474800-01)",11,16435035,16440299,"GO:0016829;GO:0010333;GO:0000287;GO:0046872;GO:0008152","lyase activity;terpene synthase activity;magnesium ion binding;metal ion binding;metabolic process","Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS03T0784800-02",0.143806814798825,0.41484437394293805,-0.046917991323308005,"OS03G0784800",null,1105.24886934468,1105.4416735162,1046.84243763176,1093.11054092004,"no","OS03G0784800","Cell differentiation protein rcd1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10CF3]","Homo sapiens protein involved in sexual development, complete cds. (Os03t0784800-01);Homo sapiens protein involved in sexual development, complete cds. (Os03t0784800-02)",3,32570073,32576114,"GO:0000288;GO:0030015;GO:0000932;GO:0017148","nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;CCR4-NOT core complex;P-body;negative regulation of translation","A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability. [GOC:jp, GOC:krc];The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p. [GOC:sart, PMID:11113136];A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. [GOC:clt, PMID:12730603];Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete]"]
["OS06T0712400-02",0.144261067387898,0.41529566799663997,0.0140581759099444,"OS06G0712400",null,1900.52641938883,1812.2330536273,1843.70024658016,1905.41462697673,"no","OS06G0712400","Os06g0712400 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z800]","Protein of unknown function DUF544 family protein. (Os06t0712400-01);Similar to predicted protein. (Os06t0712400-02)",6,30128199,30134097,"GO:0071108;GO:1990380;GO:0004843;GO:0006508;GO:0006419;GO:0004813;GO:0005737;GO:0000166;GO:0003676;GO:0005524;GO:0016020;GO:0016021","protein K48-linked deubiquitination;Lys48-specific deubiquitinase activity;thiol-dependent ubiquitin-specific protease activity;proteolysis;alanyl-tRNA aminoacylation;alanine-tRNA ligase activity;cytoplasm;nucleotide binding;nucleic acid binding;ATP binding;membrane;integral component of membrane","A protein deubiquitination process in which a K48-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is removed from a protein. [GOC:mah];Hydrolysis of Lys48-linked ubiquitin unit(s) from a ubiquitinated protein. [GOC:bf, GOC:PARL, PMID:22970133];Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. [GOC:jh2, ISBN:0120793709];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala). [EC:6.1.1.7];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0465100-01",0.14469828861443,0.41566269545015805,-0.0206198649197394,"OS05G0465100",null,1319.06843357458,1339.81065836331,1338.81821187903,1282.32886808992,"no","OS05G0465100","Os05g0465100 protein [Source:UniProtKB/TrEMBL;Acc:Q6I5K0]","RabGAP/TBC domain containing protein. (Os05t0465100-01)",5,22834991,22842010,"GO:0090630;GO:0031338;GO:0017137;GO:0005096;GO:0012505;GO:0006886;GO:0005622","activation of GTPase activity;regulation of vesicle fusion;Rab GTPase binding;GTPase activator activity;endomembrane system;intracellular protein transport;intracellular","Any process that initiates the activity of an inactive GTPase through the replacement of GDP by GTP. [GOC:dph, GOC:mah, GOC:tb];Any process that modulates the frequency, rate or extent of vesicle fusion. [GOC:mah];Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases. [GOC:mah];Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. [GOC:lh];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS07T0267400-01",0.144677785602951,0.41566269545015805,0.10848551817289401,"OS07G0267400",null,659.111520524229,703.510604649478,762.889800728677,706.147527850667,"no","OS07G0267400","Os07g0267400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X517]","Peptidase C48, SUMO/Sentrin/Ubl1 domain containing protein. (Os07t0267400-01);Hypothetical conserved gene. (Os07t0267400-02)",7,9568413,9573289,"GO:0006508;GO:0008234;GO:0008233;GO:0004252;GO:0044550;GO:0016020;GO:0016709;GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016021","proteolysis;cysteine-type peptidase activity;peptidase activity;serine-type endopeptidase activity;secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;integral component of membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0705200-01",0.14585115579825902,0.415936090978189,0.9938038701114821,"OS01G0705200",null,44.8471724547508,25.7332565852614,95.6190965412028,44.9367996900341,"no","OS01G0705200","Os01g0705200 protein [Source:UniProtKB/TrEMBL;Acc:Q94JF2]","Late embryogenesis abundant protein repeat containing protein. (Os01t0705200-01)",1,29233040,29234256]
["OS03T0359700-02",0.145238608663214,0.415936090978189,0.49758625956908603,"OS03G0359700",null,39.940786321925,43.5461084944567,54.8629768566542,63.0079498290864,"no","OS03G0359700","HEAT repeat family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10L40]","Mo25-like domain containing protein. (Os03t0359700-01);Similar to protein Mo25. (Os03t0359700-02)",3,13975002,13981417]
["OS08T0421825-01",0.14580820419131102,0.415936090978189,-0.449256980861561,"OS08G0421825",null,68.2900126015523,82.3464210728365,48.7852533373483,61.543877836351,"no","OS08G0421825","Os08g0421825 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPV5]","Hypothetical gene. (Os08t0421825-01)",8,20195471,20197551]
["OS04T0685900-01",0.14619347864839702,0.416397819147228,-0.0562443647347586,"OS04G0685900",null,1810.19496090085,1825.00255702674,1674.3098945378,1821.89416134595,"no","OS04G0685900","OSJNBa0070M12.3 protein [Source:UniProtKB/TrEMBL;Acc:Q7X616]","Similar to Receptor-like protein kinase-like protein (Fragment). (Os04t0685900-01);Similar to H0723C07.6 protein. (Os04t0685900-02)",4,35039986,35043790,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0680400-01",0.146241538180462,0.416397819147228,-0.29565728827346105,"OS07G0680400",null,332.276777732926,257.332565852614,225.387870418549,254.967493893454,"no","OS07G0680400","Os07g0680400 protein [Source:UniProtKB/TrEMBL;Acc:Q7XHX5]","WRKY transcription factor, Drought tolerance (Os07t0680400-01)",7,28828798,28831910,"GO:0003700;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS04T0675300-02",0.146843025802534,0.416714483031677,-0.24910217280257702,"OS04G0675300",null,438.681693270472,455.406522878251,412.598949594891,339.704659024821,"no","OS04G0675300","Os04g0675300 protein [Source:UniProtKB/TrEMBL;Acc:Q0J927]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0675300-01);Similar to H0103C06.6 protein. (Os04t0675300-02)",4,34486464,34488050]
["OS03T0439900-01",0.147177868336715,0.41673570281958305,1.5675297759867002,"OS03G0439900",null,4.07701567770462,5.14665131705228,11.7084608009636,15.6301911965336,"no","OS03G0439900","Os03g0439900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DQW8]","Similar to OSIGBa0092G14.3 protein. (Os03t0439900-01)",3,18583128,18584921,"GO:0004523;GO:0015074;GO:0090502;GO:0006355;GO:0003676;GO:0008270","RNA-DNA hybrid ribonuclease activity;DNA integration;RNA phosphodiester bond hydrolysis, endonucleolytic;regulation of transcription, DNA-templated;nucleic acid binding;zinc ion binding","Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. [EC:3.1.26.4];The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS09T0511500-01",0.147481615404734,0.417013937288886,-0.0105760050704236,"OS09G0511500",null,1553.34297320546,1581.05128459846,1517.22137879153,1594.27950204643,"no","OS09G0511500","Os09g0511500 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0G4]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0511500-01)",9,19878398,19882134]
["OS10T0548850-00",0.14782013873336902,0.41726925751486604,0.146551323805898,"OS10G0548850",null,368.969918832268,373.646885617996,430.285934435412,391.731666863123,"no","OS10G0548850","Os10g0548850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XX00]","U box domain domain containing protein. (Os10t0548850-00)",10,21479425,21482015,"GO:0006950;GO:0016567;GO:0004842;GO:0006468;GO:0005524;GO:0004672","response to stress;protein ubiquitination;ubiquitin-protein transferase activity;protein phosphorylation;ATP binding;protein kinase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0391100-01",0.148270265724077,0.417509074527028,-0.0459070528799647,"OS10G0391100",null,1452.43683518227,1393.71317665776,1418.67516705009,1338.33512120319,"no","OS10G0391100","Os10g0391100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XTM9]","Conserved hypothetical protein. (Os10t0391100-01)",10,13012034,13014114]
["OS04T0478000-02",0.148376967213687,0.417653685490378,-0.0779322686182501,"OS04G0478000",null,2096.95289272508,1897.68733679893,1861.28067175623,1923.29959811515,"no","OS04G0478000","Os04g0478000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBX1]","Protein of unknown function DUF3778 domain containing protein. (Os04t0478000-01);Protein of unknown function DUF3778 domain containing protein. (Os04t0478000-02)",4,23915756,23917013,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0271600-01",0.14868315219144,0.417732494394132,0.10479929384400201,"OS03G0271600",null,678.823110337819,756.557743606685,766.904182463116,776.625125077762,"no","OS03G0271600","Os03g0271600 protein [Source:UniProtKB/TrEMBL;Acc:Q84Q81]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0271600-01)",3,9084480,9085918,"GO:0000209;GO:0042787;GO:0043161;GO:0061630","protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity","Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777]"]
["OS01T0883200-01",0.14910745446097,0.417896563944737,0.0187188208989199,"OS01G0883200",null,1234.31649642507,1273.28153583873,1249.87819050286,1290.4676606638,"no","OS01G0883200","Os01g0883200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VB81]","Conserved hypothetical protein. (Os01t0883200-01)",1,38329179,38332595]
["OS03T0308000-01",0.14956327577467302,0.41810473286415,-0.0191704113758162,"OS03G0308000",null,2774.40916867799,2900.65268229066,2701.72732982235,2898.4235800072,"no","OS03G0308000","Os03g0308000 protein [Source:UniProtKB/TrEMBL;Acc:Q10MI2]","Ubiquitin-conjugating enzyme/RWD-like domain containing protein. (Os03t0308000-01)",3,10962902,10965786,"GO:0031625;GO:0061630;GO:0005737;GO:0016567;GO:0005524;GO:0000166;GO:0016020;GO:0016021;GO:0004842;GO:0006511;GO:0005783;GO:0048471","ubiquitin protein ligase binding;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;ATP binding;nucleotide binding;membrane;integral component of membrane;ubiquitin-protein transferase activity;ubiquitin-dependent protein catabolic process;endoplasmic reticulum;perinuclear region of cytoplasm","Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Cytoplasm situated near, or occurring around, the nucleus. [GOC:jid]"]
["OS01T0540800-01",0.149944021390809,0.41832615665528206,0.18271300055042,"OS01G0540800",null,299.858358039187,279.977831647644,348.450356382376,309.673163081322,"no","OS01G0540800","Os01g0540800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3S4]","Conserved hypothetical protein. (Os01t0540800-01)",1,19874748,19881638,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0237700-01",0.149916955956651,0.41832615665528206,0.169800154894648,"OS11G0237700",null,269.489819100681,304.371621945362,324.316132997584,321.222122797005,"no","OS11G0237700","Os11g0237700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSP1]","Similar to URF 4-related. (Os11t0237700-01)",11,7346265,7348818,"GO:0090501;GO:0004525;GO:0090502;GO:0006396","RNA phosphodiester bond hydrolysis;ribonuclease III activity;RNA phosphodiester bond hydrolysis, endonucleolytic;RNA processing","The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. [PMID:11157775, PMID:15242644];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah]"]
["OS03T0399532-00",0.150537177207477,0.41870292651598,0.172275256322794,"OS03G0399532",null,299.660652311289,263.508547433077,312.225621359029,322.372693428505,"no","OS03G0399532","Os03g0399532 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZA5]","Similar to phosphatidylinositol-4-phosphate 5-kinase family protein. (Os03t0399532-00)",3,16182053,16191797,"GO:0010008;GO:0046854;GO:0000285;GO:0042147;GO:0005829;GO:0046488;GO:0016307;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0000166;GO:0016740","endosome membrane;phosphatidylinositol phosphorylation;1-phosphatidylinositol-3-phosphate 5-kinase activity;retrograde transport, endosome to Golgi;cytosol;phosphatidylinositol metabolic process;phosphatidylinositol phosphate kinase activity;phosphorylation;kinase activity;metal ion binding;ATP binding;nucleotide binding;transferase activity","The lipid bilayer surrounding an endosome. [GOC:mah];The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + ADP + 2 H(+). [EC:2.7.1.150, RHEA:13612];The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. [GOC:jl, PMID:10873832, PMID:16936697];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. [EC:2.7.1.-, PMID:9759495];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0636800-02",0.15082774782052802,0.41884310105689204,0.562528796857916,"OS03G0636800","NEK1",36.4253745576413,46.7047189421457,72.7966231286762,49.9745230104064,"no","OS03G0636800","Serine/threonine-protein kinase Nek1 [Source:UniProtKB/Swiss-Prot;Acc:Q10GB1]","LSTK-1-like kinase. (Os03t0636800-01);Similar to cDNA clone:J033073A22, full insert sequence. (Os03t0636800-02)",3,24351648,24357284,"GO:0006468;GO:0005524;GO:0004672;GO:0016310;GO:0016301;GO:0004674;GO:0000166;GO:0016740","protein phosphorylation;ATP binding;protein kinase activity;phosphorylation;kinase activity;protein serine/threonine kinase activity;nucleotide binding;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0966500-01",0.15117861851427902,0.419143581504401,-0.085221725187774,"OS01G0966500",null,991.04328961834,1013.09513963496,954.406026285182,934.774325635343,"no","OS01G0966500","Os01g0966500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KEG9]","Similar to Vacuolar protein sorting 55 containing protein. (Os01t0966500-01);Similar to Vacuolar protein sorting 55 containing protein. (Os01t0966500-02)",1,42621833,42624710,"GO:0016020;GO:0016021;GO:0005768;GO:0032511;GO:2000009","membrane;integral component of membrane;endosome;late endosome to vacuole transport via multivesicular body sorting pathway;negative regulation of protein localization to cell surface","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];The directed movement of substances from endosomes to vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the vacuole. [GOC:mah, PMID:12461556, PMID:16689637];Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to the cell surface. [GOC:obol]"]
["OS02T0182800-01",0.15172091534433602,0.419529134365113,-0.0223159465591331,"OS02G0182800","HOS58",2886.52709981487,2993.29240599761,2782.71085036235,3006.85803143315,"no","OS02G0182800","Homeobox protein knotted-1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0E3C3]","Similar to NTH23 protein. (Os02t0182800-01)",2,4625425,4628750,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0388900-01",0.15206562677847202,0.41976048331549304,0.38414859982957,"OS03G0388900",null,66.2515047627,66.9064671216796,84.8863408069861,88.8967124302848,"no","OS03G0388900","ICE-like protease p20 domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q75LQ1]","Peptidase C14, caspase catalytic domain containing protein. (Os03t0388900-01)",3,15530630,15532454,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0183900-01",0.15224455347152702,0.42010256481774705,-0.0549911723873331,"OS06G0183900",null,962.17569993829,920.221255488948,913.259942475161,898.735993800681,"no","OS06G0183900","Os06g0183900 protein [Source:UniProtKB/TrEMBL;Acc:Q5SMK9]","Protein of unknown function DUF602 family protein. (Os06t0183900-01)",6,4189161,4190563,"GO:0005634;GO:0071171;GO:1902979;GO:0000380","nucleus;site-specific DNA replication termination at RTS1 barrier;mitotic DNA replication termination;alternative mRNA splicing, via spliceosome","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A DNA replication termination process that takes place at the RTS1 termination site in the mating type locus, in a specific direction required for subsequent imprinting and mating-type switching. [GOC:vw, PMID:12009298, PMID:18723894];Any DNA replication termination involved in mitotic cell cycle DNA replication. [GO_REF:0000060, GOC:TermGenie];The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition. [GOC:krc, PMID:12110900]"]
["OS05T0347000-01",0.152706013183378,0.42015542158943403,0.0813580097676115,"OS05G0347000",null,747.330396579554,768.703013928688,830.677481243397,773.306304344573,"no","OS05G0347000","Os05g0347000 protein [Source:UniProtKB/TrEMBL;Acc:Q5W6Q8]","TAFII55 protein conserved region domain containing protein. (Os05t0347000-01)",5,16344071,16346557,"GO:0051123;GO:0005669;GO:0003713;GO:0044212;GO:0006357;GO:0006367;GO:0006355;GO:0008134;GO:0035035","RNA polymerase II transcriptional preinitiation complex assembly;transcription factor TFIID complex;transcription coactivator activity;transcription regulatory region DNA binding;regulation of transcription from RNA polymerase II promoter;transcription initiation from RNA polymerase II promoter;regulation of transcription, DNA-templated;transcription factor binding;histone acetyltransferase binding","The aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase. [GOC:txnOH, PMID:10882737, PMID:15020047];A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. [GOC:krc, GOC:mah, ISBN:0471953393, ISBN:0879695501];Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. [GOC:mah, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription. [ISBN:0198506732];Interacting selectively and non-covalently with the enzyme histone acetyltransferase. [GOC:bf]"]
["OS04T0414000-00",0.15299889931183602,0.42043734230754,-0.37516038246494504,"OS04G0414000",null,129.445247767122,155.428869774979,128.7930688106,90.8504863298514,"no","OS04G0414000","Os04g0414000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WA22]","Similar to OSIGBa0134P10.12 protein. (Os04t0414000-00)",4,20446867,20451616]
["OS01T0174900-01",0.15348285670692102,0.42076457067687906,-0.0727913468689708,"OS01G0174900","GRXS1",764.26681853004,759.373616310787,704.156591699283,744.51555711784,"no","OS01G0174900","Monothiol glutaredoxin-S1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0JQ97]","Thioredoxin fold domain containing protein. (Os01t0174900-01)",1,3842779,3845436,"GO:0051537;GO:0051536;GO:0005739;GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055;GO:0046872","2 iron, 2 sulfur cluster binding;iron-sulfur cluster binding;mitochondrion;cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity;metal ion binding","Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS08T0165800-00",0.153914724662179,0.42105890925898504,0.6600757842003,"OS08G0165800",null,15.7316231885183,25.9668107377009,37.0781058131369,28.8123261777448,"no","OS08G0165800","Os08g0165800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCN4]","Hypothetical protein. (Os08t0165800-00)",8,3839189,3842346,"GO:0006308;GO:0004536;GO:0016788","DNA catabolic process;deoxyribonuclease activity;hydrolase activity, acting on ester bonds","The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:go_curators, ISBN:0198506732];Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of any ester bond. [GOC:jl]"]
["OS02T0161900-01",0.15435980194693702,0.421488600530654,-0.0123927462117273,"OS02G0161900",null,55810.3016383655,50227.6833068506,56112.1671065813,49018.8528461347,"no","OS02G0161900","Os02g0161900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VF30]","Similar to polyubiquitin containing 7 ubiquitin monomers. (Os02t0161900-01)",2,3340458,3343060,"GO:0016874","ligase activity","Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah]"]
["OS02T0484950-00",0.15444328437821,0.421488600530654,0.36517272794850303,"OS02G0484950",null,81.5403135540923,73.0824487021424,103.424737075178,95.7349210787682,"no","OS02G0484950","Os02g0484950 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6T3]","Hypothetical conserved gene. (Os02t0484950-00)",2,16747962,16748375]
["OS03T0270700-01",0.15481291810239,0.42172888344782206,0.189432900088908,"OS03G0270700",null,405.442101898721,429.534183724704,503.695593826583,448.440713587117,"no","OS03G0270700","Os03g0270700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VW08]","Conserved hypothetical protein. (Os03t0270700-01);Hypothetical conserved gene. (Os03t0270700-02)",3,9047645,9051456]
["OS02T0502500-02",0.15528129029915602,0.421943055134447,-0.165010381437823,"OS02G0502500",null,855.154038150476,1005.65566648289,834.2278300348,825.469471741751,"no","OS02G0502500","Os02g0502500 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6D3]","Protein kinase-like domain containing protein. (Os02t0502500-01);Protein kinase-like domain containing protein. (Os02t0502500-02)",2,17781040,17785512,"GO:0005886","plasma membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS02T0179250-01",0.155572379421677,0.42214487766824704,-0.6165887286999611,"OS02G0179250",null,49.9987768459388,41.4122184910319,39.5210747092526,20.0982064688429,"no","OS02G0179250","Os02g0179250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KET2]","Hypothetical gene. (Os02t0179250-01)",2,4394882,4398791,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0182100-01",0.156099549753305,0.42223898802109705,0.18238654086255102,"OS02G0182100","RR24",2137.35328921864,1796.58191376251,2254.31095287037,2209.75931236627,"no","OS02G0182100","Two-component response regulator ORR24 [Source:UniProtKB/Swiss-Prot;Acc:Q6H805]","B-type response regulator, Cytokinin signaling (Os02t0182100-01)",2,4573831,4578257,"GO:0009736;GO:0000160;GO:0003700;GO:0005622;GO:0007165;GO:0003677;GO:0005634;GO:0006355;GO:0006351","cytokinin-activated signaling pathway;phosphorelay signal transduction system;transcription factor activity, sequence-specific DNA binding;intracellular;signal transduction;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0272500-01",0.15626442423157,0.42227053680549503,0.0582181169126721,"OS09G0272500",null,828.653436493463,876.989384425709,889.843020873234,886.036463453498,"no","OS09G0272500","Cation exchanger-like protein [Source:UniProtKB/TrEMBL;Acc:Q6H4Y9]","Similar to cation cation antiporter. (Os09t0272500-01)",9,5445591,5450231,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0256800-01",0.156423878750479,0.42250431886821205,0.645370405575971,"OS06G0256800",null,16.3080627108185,26.7625868486719,30.246857069156,37.1217040917673,"no","OS06G0256800","Os06g0256800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WV67]","Hypothetical conserved gene. (Os06t0256800-01)",6,8176855,8177675]
["OS03T0719300-02",0.156921584689782,0.422812263466109,-0.52578651055337,"OS03G0719300",null,375.626241489074,320.168587663283,275.696099415559,207.589312374,"no","OS03G0719300","3,4-dihydroxy-2-butanone kinase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q6ASW3]","Similar to Dihydroxyacetone/glycerone kinase-like protein. (Os03t0719300-01);Similar to Dihydroxyacetone kinase-like protein. (Os03t0719300-02)",3,29137670,29145550,"GO:0006071;GO:0004371;GO:0016310;GO:0016301;GO:0005524","glycerol metabolic process;glycerone kinase activity;phosphorylation;kinase activity;ATP binding","The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:ai, ISBN:0198506732];Catalysis of the reaction: ATP + glycerone = ADP + glycerone phosphate + 2 H(+). [EC:2.7.1.29, RHEA:15776];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS06T0354700-02",0.15732948577991201,0.42323945139983,0.47068439247924304,"OS06G0354700",null,62.0725691499105,54.0321094122041,87.4229859942881,73.4710111264259,"no","OS06G0354700","Pheophytinase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G13800) UniProtKB/Swiss-Prot;Acc:Q9FFZ1]","Alpha/beta hydrolase-fold family protein, Chlorophyll degradation during senescence (Os06t0354700-01);Similar to Hydrolase, alpha/beta fold family protein. (Os06t0354700-02);Similar to Hydrolase, alpha/beta fold family protein. (Os06t0354700-03)",6,14527016,14531805,"GO:0016787;GO:0009507;GO:0015996;GO:0080124","hydrolase activity;chloroplast;chlorophyll catabolic process;pheophytinase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl];Catalysis of the reaction: pheophytin + H2O = phytol + pheophorbide. [PMID:19304936]"]
["OS03T0737400-01",0.157832054670442,0.423639519381359,0.0935527396156407,"OS03G0737400",null,494.338150921685,500.254508017482,537.613491777579,523.611405083875,"no","OS03G0737400","Magnesium-dependent phosphatase-1 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q84R45]","HAD-superfamily phosphatase, subfamily IIIC domain containing protein. (Os03t0737400-01)",3,30228262,30230172,"GO:0016791;GO:0016311","phosphatase activity;dephosphorylation","Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS01T0793900-01",0.158258070103259,0.42390851813035,-0.30872643571768804,"OS01G0793900",null,141.676294800235,125.578292136076,101.473326941685,114.295773124652,"no","OS01G0793900","Os01g0793900 protein [Source:UniProtKB/TrEMBL;Acc:Q8S1K8]","Conserved hypothetical protein. (Os01t0793900-01)",1,33625287,33626043]
["OS09T0401200-01",0.15880299703974401,0.424444859485595,-0.0167990026460891,"OS09G0401200",null,1252.57802101908,1207.86648984692,1242.41799187085,1189.5428135317,"no","OS09G0401200","TPR repeat-containing thioredoxin TDX [Source:Projected from Arabidopsis thaliana (AT3G17880) UniProtKB/Swiss-Prot;Acc:Q8VWG7]","Similar to tetraticopeptide domain-containing thioredoxin. (Os09t0401200-01);Natural antisense transcript (cis-NAT) of STR1, Mycorrhizal arbuscule formation (Os09t0401200-02)",9,14048689,14053566,"GO:0005623;GO:0055114;GO:0045454;GO:0016671;GO:0030544;GO:0006457;GO:0010286;GO:0051259","cell;oxidation-reduction process;cell redox homeostasis;oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor;Hsp70 protein binding;protein folding;heat acclimation;protein oligomerization","The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. [GOC:jl];Interacting selectively and non-covalently with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size. [ISBN:0198506732];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators];The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. [GOC:ai]"]
["OS02T0100800-01",0.15883956699525,0.42446133568082706,-0.256756979436685,"OS02G0100800",null,164.099881027611,181.16212636024,153.185695479274,135.787286019885,"no","OS02G0100800","Os02g0100800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VDI5]","Conserved hypothetical protein. (Os02t0100800-01)",2,42347,43012]
["OS02T0126700-01",0.15927414394490902,0.42474583674041,-0.0505316485858077,"OS02G0126700",null,1019.25391942615,1079.76744631757,1026.44173021781,1000.33223657815,"no","OS02G0126700","Os02g0126700 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z2M5]","Similar to Small nuclear ribonucleoprotein homolog. (Os02t0126700-01)",2,1399287,1401334,"GO:0046540;GO:0005685;GO:0071011;GO:0000398;GO:0005681;GO:0030529;GO:0005687;GO:0005682;GO:0000387;GO:0019013;GO:0005686","U4/U6 x U5 tri-snRNP complex;U1 snRNP;precatalytic spliceosome;mRNA splicing, via spliceosome;spliceosomal complex;intracellular ribonucleoprotein complex;U4 snRNP;U5 snRNP;spliceosomal snRNP assembly;viral nucleocapsid;U2 snRNP","A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. [GOC:krc, GOC:pr, PMID:11867543];A ribonucleoprotein complex that contains small nuclear RNA U1. [GOC:krc, GOC:mah];A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, PMID:18322460, PMID:19239890];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. [GOC:editors, GOC:mah, ISBN:0198547684, PMID:19239890];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];A ribonucleoprotein complex that contains small nuclear RNA U4. [GOC:krc, GOC:mah];A ribonucleoprotein complex that contains small nuclear RNA U5. [GOC:krc, GOC:mah];The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. [GOC:krc, GOC:mah, ISBN:0879695897];The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. [ISBN:0781702534];A ribonucleoprotein complex that contains small nuclear RNA U2. [GOC:krc, GOC:mah]"]
["OS05T0209100-01",0.159631105772639,0.425047673915159,3.9060220349550505E-3,"OS05G0209100",null,1549.26595752775,1546.0540556425,1495.7558673231,1607.95591934339,"no","OS05G0209100","Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 [Source:Projected from Arabidopsis thaliana (AT1G30000) UniProtKB/Swiss-Prot;Acc:Q93Y37]","Glycoside hydrolase, family 47 protein. (Os05t0209100-01)",5,6752222,6756320,"GO:0006491;GO:0004571;GO:0000139;GO:0005783;GO:0008152;GO:0016798;GO:0005509;GO:0016787;GO:0016020","N-glycan processing;mannosyl-oligosaccharide 1,2-alpha-mannosidase activity;Golgi membrane;endoplasmic reticulum;metabolic process;hydrolase activity, acting on glycosyl bonds;calcium ion binding;hydrolase activity;membrane","The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. [ISBN:0879695595, PMID:12736198];Catalysis of the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in an oligo-mannose oligosaccharide. [GOC:bf, PMID:25092655];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0786700-01",0.16020265663285302,0.42531341889268,0.07238655173201759,"OS03G0786700",null,1076.33213891402,1097.26606079555,1199.14152703202,1086.29828815908,"no","OS03G0786700","tRNA (guanine(26)-N(2))-dimethyltransferase [Source:UniProtKB/TrEMBL;Acc:Q6F3B7]","N2,N2-dimethylguanosine tRNA methyltransferase family protein. (Os03t0786700-01)",3,32665994,32671079,"GO:0030488;GO:0004809;GO:0005739;GO:0005634;GO:0008033;GO:0003723;GO:0032259;GO:0008168;GO:0002940;GO:0000049;GO:0016740","tRNA methylation;tRNA (guanine-N2-)-methyltransferase activity;mitochondrion;nucleus;tRNA processing;RNA binding;methylation;methyltransferase activity;tRNA N2-guanine methylation;tRNA binding;transferase activity","The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah];Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing guanine = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine. [EC:2.1.1.32];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The process whereby a guanine in a tRNA is methylated at the N2 position of guanine. [ISBN:155581073X, ISBN:1555811337];Interacting selectively and non-covalently with transfer RNA. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0665600-01",0.16051397676353302,0.425535667242787,0.0367611083070189,"OS04G0665600",null,1931.48617731256,1823.97322676333,1993.36545136405,1859.01586543771,"no","OS04G0665600","Os04g0665600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J995]","Similar to Phosphate starvation response regulator-like protein. (Os04t0665600-01)",4,33972765,33975729,"GO:0005634;GO:0006355;GO:0006351;GO:0003677","nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS02T0673600-01",0.160706558919004,0.42565295085335103,-0.119487997763302,"OS02G0673600",null,1980.25095708293,2146.3926919704,1801.94912346202,1996.68527013951,"no","OS02G0673600","ORMDL family protein-like [Source:UniProtKB/TrEMBL;Acc:Q6EPG3]","ORMDL family protein. (Os02t0673600-01)",2,27422921,27427541,"GO:0005789;GO:0016021;GO:0016020;GO:0090156;GO:1900060;GO:0035339","endoplasmic reticulum membrane;integral component of membrane;membrane;cellular sphingolipid homeostasis;negative regulation of ceramide biosynthetic process;SPOTS complex","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Any biological process involved in the maintenance of an internal steady state of sphingolipids at the level of the cell. [GOC:ascb_2009, GOC:dph, GOC:tb];Any process that stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process. [GOC:TermGenie, PMID:15302821];A multiprotein complex at least composed of serine palmitoyltransferases and ORM proteins (known as ORMDL proteins in mammals and other higher vertebrates) that plays a key role in sphingolipid homeostasis. [PMID:20182505]"]
["OS01T0973300-01",0.161016820275931,0.42585409130251706,0.0691502039924721,"OS01G0973300",null,962.17569993829,952.130493654672,958.142375545521,1050.1534710171,"no","OS01G0973300","AP3-complex subunit beta-A [Source:Projected from Arabidopsis thaliana (AT3G55480) UniProtKB/Swiss-Prot;Acc:Q9M2T1]","Armadillo-like helical domain containing protein. (Os01t0973300-01)",1,42971420,42976876,"GO:0030123;GO:0015031;GO:0030117;GO:0016192;GO:0006886;GO:0006810;GO:0016020;GO:0006896;GO:0051453;GO:0080171","AP-3 adaptor complex;protein transport;membrane coat;vesicle-mediated transport;intracellular protein transport;transport;membrane;Golgi to vacuole transport;regulation of intracellular pH;lytic vacuole organization","A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B). [GOC:mah, PMID:10611976, PMID:21097499];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances from the Golgi to the vacuole. [GOC:ai];Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion. [GOC:ai, GOC:dph, GOC:tb];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lytic vacuole. [PMID:20729380]"]
["OS06T0626200-01",0.16156242157553802,0.426393462061294,0.43768073444341904,"OS06G0626200",null,87.1727068349536,92.6888715217614,107.521403415734,136.08765310654,"no","OS06G0626200","Os06g0626200 protein [Source:UniProtKB/TrEMBL;Acc:Q67VS2]","Similar to cDNA, clone: J065099M17, full insert sequence. (Os06t0626200-01);Similar to cDNA, clone: J065099M17, full insert sequence. (Os06t0626200-02)",6,25269145,25270617]
["OS02T0628100-03",0.16205497373358,0.42674569535496704,0.33379166095816803,"OS02G0628100",null,163.363069475919,236.290257852241,253.24317698012,250.448454405364,"no","OS02G0628100","Os02g0628100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLX8]","Hypothetical gene. (Os02t0628100-01);Hypothetical gene. (Os02t0628100-03)",2,25110322,25113452]
["OS03T0724700-01",0.16269057826132602,0.42686702028226803,1.81608104536744,"OS03G0724700",null,0,10.8141096598693,21.2178704580792,16.861138629304,"no","OS03G0724700","Maf-like protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10DP6]","Similar to cDNA clone:002-104-C06, full insert sequence. (Os03t0724700-01);Similar to cDNA clone:002-144-A12, full insert sequence. (Os03t0724700-02);Maf-like protein family protein. (Os03t0724700-03)",3,29454977,29457859,"GO:0047429","nucleoside-triphosphate diphosphatase activity","Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide. [EC:3.6.1.19, MetaCyc:3.6.1.19-RXN]"]
["OS12T0416300-01",0.16229250899053602,0.42686702028226803,0.11834314470410601,"OS12G0416300",null,768.457336801977,700.086312558185,756.558403340733,837.52740671414,"no","OS12G0416300","Os12g0416300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9G8]","Conserved hypothetical protein. (Os12t0416300-01);Hypothetical gene. (Os12t0416300-02);Hypothetical gene. (Os12t0416300-03)",12,12833827,12839245]
["OS07T0162300-01",0.16281018501792602,0.42693131685414804,0.142544792818801,"OS07G0162300",null,1911.10109892404,1853.82380440223,2223.63184711634,1932.28238667146,"no","OS07G0162300","Serine/threonine-protein kinase RIO1 [Source:UniProtKB/TrEMBL;Acc:Q0D8G3]","Similar to RIO kinase. (Os07t0162300-01)",7,3324859,3329936,"GO:0016310;GO:0016301;GO:0004674;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","phosphorylation;kinase activity;protein serine/threonine kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0250000-01",0.163179418624293,0.427218280721517,-0.371026315456554,"OS03G0250000",null,114.64877872514,146.657448927889,111.213608367844,90.8367895883574,"no","OS03G0250000","39 kDa EF-Hand containing protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10P20]","Conserved hypothetical protein. (Os03t0250000-01);Conserved hypothetical protein. (Os03t0250000-02)",3,7914611,7918255,"GO:0005509;","calcium ion binding;","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];"]
["OS02T0622200-01",0.163735205800546,0.42748572958624803,-0.0609509386924908,"OS02G0622200",null,671.375548419732,691.784384322484,650.172765524356,656.596018725983,"no","OS02G0622200","Os02g0622200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K9N0]","Phosphatidylinositol N-acetylglucosaminyltransferase family protein. (Os02t0622200-01)",2,24773729,24775040,"GO:0006506;GO:0017176;GO:0016021;GO:0000506;GO:0016020;GO:0003824;GO:0009846;GO:0009860","GPI anchor biosynthetic process;phosphatidylinositol N-acetylglucosaminyltransferase activity;integral component of membrane;glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex;membrane;catalytic activity;pollen germination;pollen tube growth","The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol. [EC:2.4.1.198];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];An enzyme complex that catalyzes the transfer of GlcNAc from UDP-GlcNAc to an acceptor phosphatidylinositol, the first step in the production of GPI anchors for cell surface proteins. The complex contains PIG-A, PIG-C, PIG-H, PIG-Q, PIG-P, and DPM2 in human, and Eri1p, Gpi1p, Gpi2p, Gpi15p, Gpi19p, and Spt14p in budding yeast. [GOC:kp, GOC:rb, PMID:10944123, PMID:15163411];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The physiological and developmental changes that occur in a heterosporous plant pollen grain, beginning with hydration and terminating with the emergence of the pollen tube through the aperture. [GOC:lr, http://www.bio.uu.nl, ISBN:0943088399];Growth of pollen via tip extension of the intine wall. [ISBN:00943088399]"]
["OS05T0196500-01",0.16406844100165,0.427770866144598,0.0823095401149843,"OS05G0196500","JMJ703",1071.23586931689,1127.11663843445,1219.63133343371,1107.78980105432,"no","OS05G0196500","Lysine-specific demethylase JMJ703 [Source:UniProtKB/Swiss-Prot;Acc:Q53WJ1]","H3K4-specific demethylase, JmjC domain-containing protein, Control of stem elongation, Control of transposon activity, Panicle development (Os05t0196500-01)",5,5940163,5946854,"GO:0016569;GO:0051213;GO:0055114;GO:0046872;GO:0016491;GO:0005634;GO:0006355;GO:0045814;GO:0040010;GO:0034720;GO:0032453;GO:0008198;GO:0006351","covalent chromatin modification;dioxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;nucleus;regulation of transcription, DNA-templated;negative regulation of gene expression, epigenetic;positive regulation of growth rate;histone H3-K4 demethylation;histone demethylase activity (H3-K4 specific);ferrous iron binding;transcription, DNA-templated","The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. [GOC:mah, GOC:vw];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any epigenetic process that stops, prevents or reduces the rate of gene expression. [GOC:go_curators];Any process that increases the rate of growth of all or part of an organism. [GOC:mah];The modification of histone H3 by the removal of a methyl group from lysine at position 4 of the histone. [GOC:mah];Catalysis of the removal of a methyl group from lysine at position 4 of the histone H3 protein. [GOC:mah];Interacting selectively and non-covalently with ferrous iron, Fe(II). [GOC:ai];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0675300-01",0.16453927652438402,0.42796130449305103,0.13310977730089602,"OS04G0675300",null,605.03432022191,581.129052376078,642.13822755858,658.673803653762,"no","OS04G0675300","Os04g0675300 protein [Source:UniProtKB/TrEMBL;Acc:Q0J927]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0675300-01);Similar to H0103C06.6 protein. (Os04t0675300-02)",4,34486464,34488050]
["OS03T0775500-01",0.16456319154537802,0.42796515390657,0.0605401817169159,"OS03G0775500",null,1035.56198213697,1054.03418973231,1043.02871635251,1136.11952259803,"no","OS03G0775500","Protein AE7-like 1 [Source:Projected from Arabidopsis thaliana (AT3G50845) UniProtKB/Swiss-Prot;Acc:A8MR89]","Protein of unknown function DUF59 domain containing protein. (Os03t0775500-01)",3,32153925,32157349,"GO:0016226","iron-sulfur cluster assembly","The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]"]
["OS07T0693900-01",0.16489912829351702,0.42812595867998704,-0.0279219481217267,"OS07G0693900",null,980.52227048796,962.423796288776,973.753656613473,931.950150093315,"no","OS07G0693900","Os07g0693900 protein [Source:UniProtKB/TrEMBL;Acc:Q69R94]","HEAT domain containing protein. (Os07t0693900-01)",7,29534469,29545694,"GO:0006396;GO:0035194","RNA processing;posttranscriptional gene silencing by RNA","Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]"]
["OS04T0559800-01",0.165669311242634,0.428389509381885,-0.0411441333191074,"OS04G0559800",null,1882.22326716835,1938.91640896048,1939.70167269297,1774.00240654314,"no","OS04G0559800","OSJNBa0084K11.3 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUR1]","Similar to YDA. (Os04t0559800-01)",4,28049246,28056867,"GO:0007346;GO:0004674;GO:0005737;GO:0006468;GO:0005524;GO:0004672;GO:0023014;GO:0031098;GO:0032147","regulation of mitotic cell cycle;protein serine/threonine kinase activity;cytoplasm;protein phosphorylation;ATP binding;protein kinase activity;signal transduction by protein phosphorylation;stress-activated protein kinase signaling cascade;activation of protein kinase activity","Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals. [GOC:mah];Any process that initiates the activity of an inactive protein kinase. [GOC:mah]"]
["OS07T0172900-01",0.165562900040681,0.428389509381885,-0.0835569255162401,"OS07G0172900",null,668.469162490603,682.44418123912,614.519564793642,660.375237582331,"no","OS07G0172900","Os07g0172900 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZA55]","Similar to biopterin transport-related protein BT1. (Os07t0172900-01);Hypothetical conserved gene. (Os07t0172900-02)",7,3830318,3840267,"GO:0006810;GO:0016021;GO:0016020","transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0636600-02",0.16605035875589902,0.42853381702595106,0.044509668048314,"OS04G0636600",null,1648.13358771209,1756.03742937824,1694.79970093948,1816.03283964725,"no","OS04G0636600","Os04g0636600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFK3]","Hypothetical conserved gene. (Os04t0636600-01);Mitochondrial inner membrane protein Mitofilin domain containing protein. (Os04t0636600-02)",4,32370472,32378265,"GO:0005743;GO:0005739;GO:0016020;GO:0016021;","mitochondrial inner membrane;mitochondrion;membrane;integral component of membrane;","The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS02T0623500-01",0.16653458336364202,0.428857433490053,0.9775298849412171,"OS02G0623500",null,51.7306919478056,23.7464097977482,99.0408715194689,49.5804204466787,"no","OS02G0623500","Lysine--tRNA ligase [Source:UniProtKB/TrEMBL;Acc:Q6K1T2]","Lysyl-tRNA synthetase, class II domain containing protein. (Os02t0623500-01);Similar to Lysyl-tRNA synthetase. (Os02t0623500-02)",2,24848195,24860061,"GO:0006430;GO:0004824;GO:0006418;GO:0004812;GO:0005737;GO:0000166;GO:0003676;GO:0005524;GO:0048481;GO:0005739;GO:0009507","lysyl-tRNA aminoacylation;lysine-tRNA ligase activity;tRNA aminoacylation for protein translation;aminoacyl-tRNA ligase activity;cytoplasm;nucleotide binding;nucleic acid binding;ATP binding;plant ovule development;mitochondrion;chloroplast","The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). [EC:6.1.1.6];The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS08T0387050-01",0.166957601100057,0.42907043351064106,0.9042583912892761,"OS08G0387050",null,27.3666706738288,8.73064268331624,37.958326599662,29.600761536325,"no","OS08G0387050","Os08g0387050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XF88]","Conserved hypothetical protein. (Os08t0387050-01)",8,18277581,18280448]
["OS12T0116200-02",0.166954517767669,0.42907043351064106,-0.30948655545715203,"OS12G0116200",null,160.643314279163,147.508233129484,132.981972605058,115.674412935005,"no","OS12G0116200","Os12g0116200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6A9]","Hypothetical conserved gene. (Os12t0116200-01);Non-protein coding transcript. (Os12t0116200-02)",12,795561,797635]
["OS04T0486500-01",0.16773104935174402,0.43008615127910604,-0.10496400447365101,"OS04G0486500",null,492.299643082832,517.753122495459,486.876828306736,452.298657749691,"no","OS04G0486500","Mitotic spindle checkpoint protein MAD2 [Source:Projected from Arabidopsis thaliana (AT3G25980) UniProtKB/Swiss-Prot;Acc:Q9LU93]","Similar to Mitotic spindle checkpoint protein MAD2. (Os04t0486500-01)",4,24301505,24303104,"GO:0007094;GO:0007346;GO:0000776;GO:0005634;GO:0005635;GO:0005737;GO:0005828;GO:0005876;GO:0010369","mitotic spindle assembly checkpoint;regulation of mitotic cell cycle;kinetochore;nucleus;nuclear envelope;cytoplasm;kinetochore microtubule;spindle microtubule;chromocenter","A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190];Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. [GOC:elh];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any of the spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic or meiotic chromosome segregation. [ISBN:0815316194];Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. [ISBN:0815316194];A region in which centric, heterochromatic portions of one or more chromosomes form a compact structure. [PMID:12384572, PMID:15053486, PMID:16831888]"]
["OS04T0691100-01",0.16825948995487203,0.43043301629725605,-0.0261827903569111,"OS04G0691100","SAPK5",1724.57763166905,1581.05128459846,1627.47605133394,1618.70167579101,"no","OS04G0691100","Serine/threonine-protein kinase SAPK5 [Source:UniProtKB/Swiss-Prot;Acc:Q7XKA8]","Serine/threonine protein kinase, Hyperosmotic stress response (Os04t0691100-01)",4,35344338,35346212,"GO:0009738;GO:0006468;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672;GO:0016740","abscisic acid-activated signaling pathway;protein phosphorylation;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity;transferase activity","A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0731950-01",0.16847270825483202,0.43050818623153503,0.138586424698971,"OS06G0731950",null,410.519473643852,420.515132229873,486.418902502694,428.405582478459,"no","OS06G0731950","Os06g0731950 protein [Source:UniProtKB/TrEMBL;Acc:C7J3U7]","Conserved hypothetical protein. (Os06t0731950-01)",6,31217788,31219940]
["OS01T0762400-00",0.16912963243917,0.430797590320153,-0.210111275915826,"OS01G0762400",null,227.293624032032,212.042034262554,178.554027214695,201.23871165537,"no","OS01G0762400","Os01g0762400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8I5]","Similar to Import inner membrane translocase subunit TIM50. (Os01t0762400-00)",1,32072708,32082549,"GO:0005744;GO:0030150;GO:0004721;GO:0005743;GO:0015031;GO:0006470;GO:0016020;GO:0016021","mitochondrial inner membrane presequence translocase complex;protein import into mitochondrial matrix;phosphoprotein phosphatase activity;mitochondrial inner membrane;protein transport;protein dephosphorylation;membrane;integral component of membrane","The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor. [EC:3.6.3.51, PMID:8851659];The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. [ISBN:0716731363];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The process of removing one or more phosphoric residues from a protein. [GOC:hb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0815600-01",0.16910188888479602,0.430797590320153,0.179998959141196,"OS02G0815600",null,275.198558245062,289.241804018338,343.448183494932,295.996745784355,"no","OS02G0815600","Diphthamide synthesis DPH2-like [Source:UniProtKB/TrEMBL;Acc:Q6K6C0]","Diphthamide synthesis, DHP1 domain containing protein. (Os02t0815600-01)",2,34934560,34936977,"GO:0017183","peptidyl-diphthamide biosynthetic process from peptidyl-histidine","The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria. [GOC:pde, PMID:20559380, RESID:AA0040]"]
["OS10T0509700-01",0.16957867758608702,0.43131599713704,0.535700505464638,"OS10G0509700",null,30.5776175827846,40.1438802730078,42.9310229368665,59.5901039367843,"no","OS10G0509700","Os10g0509700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XW27]","Hypothetical gene. (Os10t0509700-01)",10,19592982,19594267,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0394700-01",0.16988271623616602,0.43142148542624,0.102198611402846,"OS09G0394700",null,514.092156161774,497.251631779944,566.479750190789,519.104812109344,"no","OS09G0394700","Os09g0394700 protein [Source:UniProtKB/TrEMBL;Acc:A3BYJ4]","Similar to Lysophospholipase-like protein. (Os09t0394700-01)",9,13695392,13699818,"GO:0016020;GO:0006629;GO:0016298","membrane;lipid metabolic process;lipase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of a lipid or phospholipid. [GOC:mah]"]
["OS10T0167300-01",0.17038214380327,0.43178508858601106,0.593045221517125,"OS10G0167300",null,355.91947158942,424.790471647063,650.450913026125,527.193323899758,"no","OS10G0167300","Os10g0167300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRH6]","Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-01);Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2). (Os10t0167300-02)",10,4639798,4644295,"GO:0000015;GO:0004634;GO:0006096;GO:0000287;GO:0046872;GO:0005737;GO:0016829","phosphopyruvate hydratase complex;phosphopyruvate hydratase activity;glycolytic process;magnesium ion binding;metal ion binding;cytoplasm;lyase activity","A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water. [GOC:jl, ISBN:0198506732];Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O. [EC:4.2.1.11, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS07T0466200-01",0.170746811144557,0.43195106299200803,-0.08705381308534489,"OS07G0466200",null,949.372125274994,872.241889987595,881.661906816231,833.284489900244,"no","OS07G0466200","Os07g0466200 protein [Source:UniProtKB/TrEMBL;Acc:Q7EYM6]","Hypothetical conserved gene. (Os07t0466200-01);Conserved hypothetical protein. (Os07t0466200-02)",7,16512417,16521870]
["OS02T0567100-01",0.17121103618549302,0.432099921185078,0.38455465529777205,"OS02G0567100",null,70.3285204404046,79.2584302826051,80.9835205399983,114.295773124652,"no","OS02G0567100","Thioredoxin-like 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6YTI3]","Thioredoxin domain 2 containing protein. (Os02t0567100-01)",2,21563496,21566565,"GO:0016671;GO:0047134;GO:0015035;GO:0045454;GO:0004791;GO:0034599;GO:0005737;GO:0006662;GO:0009536;GO:0009507;GO:0005623;GO:0055114;GO:0098869","oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor;protein-disulfide reductase activity;protein disulfide oxidoreductase activity;cell redox homeostasis;thioredoxin-disulfide reductase activity;cellular response to oxidative stress;cytoplasm;glycerol ether metabolic process;plastid;chloroplast;cell;oxidation-reduction process;cellular oxidant detoxification","Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. [GOC:jl];Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. [EC:1.8.1.8, MetaCyc:1.6.4.4-RXN];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol. [GOC:ai, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS05T0247900-01",0.171260549661318,0.432099921185078,0.130863544318352,"OS05G0247900",null,383.239473704234,434.377371159212,459.557086437821,435.691579603374,"no","OS05G0247900","Switch 2 [Source:Projected from Arabidopsis thaliana (AT1G03750) UniProtKB/Swiss-Prot;Acc:F4I2H2]","DEAD-like helicase, N-terminal domain containing protein. (Os05t0247900-01)",5,8966122,8973308,"GO:0005524;GO:0016020","ATP binding;membrane","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0244900-04",0.17167644671312401,0.43243950861401403,-0.535749280316969,"OS09G0244900",null,262.070036536734,284.633966039124,151.618016859402,225.498583376239,"no","OS09G0244900","Os09g0244900 protein [Source:UniProtKB/TrEMBL;Acc:Q6K335]","Transport protein particle (TRAPP) component domain containing protein. (Os09t0244900-01);Transport protein particle (TRAPP) component domain containing protein. (Os09t0244900-02);Transport protein particle (TRAPP) component domain containing protein. (Os09t0244900-03);Transport protein particle (TRAPP) component domain containing protein. (Os09t0244900-04)",9,3369519,3376004,"GO:0005802;GO:0030008;GO:0006888;GO:0005801;","trans-Golgi network;TRAPP complex;ER to Golgi vesicle-mediated transport;cis-Golgi network;","The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. [GOC:vw, ISBN:0815316194];A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active. [GOC:bhm, GOC:vw, PMID:22669257];The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:0716731363];The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum. [ISBN:0198506732, ISBN:0815316194];"]
["OS10T0329300-02",0.17223345250899,0.43298412952529,-0.0390241271859897,"OS10G0329300",null,987.141584970757,1003.02377871747,980.130037962686,956.923974983848,"no","OS10G0329300","Mevalonate kinase [Source:UniProtKB/TrEMBL;Acc:Q339V1]","Similar to Mevalonate kinase (EC 2.7.1.36) (MK). (Os10t0329300-01);Similar to Mevalonate kinase (EC 2.7.1.36) (MK). (Os10t0329300-02);Similar to Mevalonate kinase (EC 2.7.1.36) (MK). (Os10t0329300-03)",10,9256244,9261352,"GO:0016125;GO:0016126;GO:0008202;GO:0006694;GO:0005829;GO:0008299;GO:0006629;GO:0005737;GO:0016310;GO:0016301;GO:0019287;GO:0004496;GO:0005524;GO:0000166;GO:0016740","sterol metabolic process;sterol biosynthetic process;steroid metabolic process;steroid biosynthetic process;cytosol;isoprenoid biosynthetic process;lipid metabolic process;cytoplasm;phosphorylation;kinase activity;isopentenyl diphosphate biosynthetic process, mevalonate pathway;mevalonate kinase activity;ATP binding;nucleotide binding;transferase activity","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922];Catalysis of the reaction: (R)-mevalonate + ATP = (R)-5-phosphomevalonate + ADP + 2 H(+). [EC:2.7.1.36, RHEA:17068];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0567700-01",0.17247252956792802,0.43302365457879305,-0.0706262177822278,"OS12G0567700",null,10094.6908179966,8986.05319957328,8843.79072499451,9325.36282263185,"no","OS12G0567700","60S ribosomal protein L2 [Source:UniProtKB/TrEMBL;Acc:Q2QNF3]","Similar to 60S ribosomal protein L2 (Fragment). (Os12t0567700-01)",12,23349996,23351824,"GO:0002181;GO:0003735;GO:0022625;GO:0003723;GO:0015934;GO:0016740;GO:0005840;GO:0005622;GO:0006412","cytoplasmic translation;structural constituent of ribosome;cytosolic large ribosomal subunit;RNA binding;large ribosomal subunit;transferase activity;ribosome;intracellular;translation","The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. [GOC:hjd];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]"]
["OS03T0363400-01",0.172925683130521,0.43310334048972204,-0.187736505142647,"OS03G0363400",null,270.102288647931,317.03372113042,248.804792020477,266.690137290854,"no","OS03G0363400","Os03g0363400 protein [Source:UniProtKB/TrEMBL;Acc:Q10L09]","Uncharacterised protein family UPF0153 domain containing protein. (Os03t0363400-01)",3,14151286,14153646]
["OS02T0106700-01",0.17335888789422702,0.433142030008539,0.26761387341807,"OS02G0106700",null,148.811072236219,120.431640819023,171.724091747466,152.394364166202,"no","OS02G0106700","Os02g0106700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VDR8]","Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 domain containing protein. (Os02t0106700-01)",2,391819,395616]
["OS05T0168400-01",0.17331748424149201,0.433142030008539,-0.0374050183410611,"OS05G0168400",null,1661.38388866463,1616.04851355442,1525.02701932551,1668.52291022996,"no","OS05G0168400","Os05g0168400 protein [Source:UniProtKB/TrEMBL;Acc:Q60DU1]","Conserved hypothetical protein. (Os05t0168400-01)",5,4102594,4105887,"GO:0016020;GO:0016021;GO:0006979;GO:0009555;GO:0005886","membrane;integral component of membrane;response to oxidative stress;pollen development;plasma membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS01T0758400-02",0.174171043613494,0.433565342730006,-0.10429378357459601,"OS01G0758400",null,1143.07898675106,1266.63136647382,1070.37019352072,1171.28745279024,"no","OS01G0758400","Phosphatidate cytidylyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8H0]","Similar to Phosphatidate cytidylyltransferase. (Os01t0758400-01);Similar to Phosphatidate cytidylyltransferase. (Os01t0758400-02)",1,31870933,31877607,"GO:0016024;GO:0004605;GO:0016779;GO:0016772;GO:0016020;GO:0016021;GO:0016740;GO:0008654;GO:0005789;GO:0006629;GO:0006655","CDP-diacylglycerol biosynthetic process;phosphatidate cytidylyltransferase activity;nucleotidyltransferase activity;transferase activity, transferring phosphorus-containing groups;membrane;integral component of membrane;transferase activity;phospholipid biosynthetic process;endoplasmic reticulum membrane;lipid metabolic process;phosphatidylglycerol biosynthetic process","The chemical reactions and pathways resulting in the formation of CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. [CHEBI:17962, GOC:curators];Catalysis of the reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol. [EC:2.7.7.41];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. [ISBN:0198506732]"]
["OS03T0152900-01",0.17421593486435402,0.433581398010407,0.16013869579790602,"OS03G0152900","KINUA",318.00722286096,353.060280349786,398.167872487397,351.679301922006,"no","OS03G0152900","Kinesin-like protein KIN-UA [Source:UniProtKB/Swiss-Prot;Acc:Q0DV28]","Similar to predicted protein. (Os03t0152900-01)",3,2913921,2922883,"GO:0032886;GO:0016887;GO:0003777;GO:0005871;GO:0007018;GO:0048364;GO:0003774;GO:0005856;GO:0005874;GO:0008017;GO:0005737;GO:0005524;GO:0000166","regulation of microtubule-based process;ATPase activity;microtubule motor activity;kinesin complex;microtubule-based movement;root development;motor activity;cytoskeleton;microtubule;microtubule binding;cytoplasm;ATP binding;nucleotide binding","Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton. [GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work. [GOC:mah, http://www.proweb.org/kinesin//KinesinMotility.html, http://www.proweb.org/kinesin//KinesinStructure.html];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005];Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS01T0172600-01",0.17464898493073502,0.43391687302625104,0.30666928823549605,"OS01G0172600",null,87.4012953372375,88.126223056282,107.301028361022,109.799993356898,"no","OS01G0172600","Peroxidase 25 [Source:Projected from Arabidopsis thaliana (AT2G41480) UniProtKB/Swiss-Prot;Acc:O80822]","Similar to electron carrier/ heme binding / peroxidase. (Os01t0172600-01)",1,3732525,3734022,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0042744;GO:0006979;GO:0020037;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;hydrogen peroxide catabolic process;response to oxidative stress;heme binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0290600-00",0.175477664682362,0.43435106983744703,0.561343593270182,"OS01G0290600",null,187.542721174412,112.19699871174,182.456847481683,259.851928642371,"no","OS01G0290600","Os01g0290600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V1C4]","Similar to isopenicillin N epimerase. (Os01t0290600-00)",1,10509008,10510496,"GO:0016829;GO:0003824","lyase activity;catalytic activity","Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0617300-01",0.17527134821121101,0.43435106983744703,0.242057120455679,"OS02G0617300",null,1109.84684956379,1378.3177612612,1451.059097299,1491.6380127284,"no","OS02G0617300","CLIP-associating protein 1-like [Source:UniProtKB/TrEMBL;Acc:Q6KAI5]","Similar to OSIGBa0157A06.7 protein. (Os02t0617300-01);Armadillo-like helical domain containing protein. (Os02t0617300-02)",2,24488770,24501970]
["OS05T0490200-03",0.17555529841692902,0.434393137048286,-0.428840096692894,"OS05G0490200",null,148.928156326899,118.272127500469,96.3259931960606,102.166086778026,"no","OS05G0490200","Os05g0490200 protein [Source:UniProtKB/TrEMBL;Acc:Q6F325]","Protein of unknown function DUF1692 domain containing protein. (Os05t0490200-01);Similar to serologically defined breast cancer antigen NY-BR-84. (Os05t0490200-02);Similar to cDNA clone:J033072O04, full insert sequence. (Os05t0490200-03)",5,24081106,24087008,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0353400-01",0.17616830518079502,0.435038317158395,0.0505607931552262,"OS06G0353400",null,746.597306269541,720.213658344324,784.10324921123,735.025081313281,"no","OS06G0353400","Os06g0353400 protein [Source:UniProtKB/TrEMBL;Acc:C7J4A1]","Similar to Histone mRNA exonuclease 1. (Os06t0353400-01);Hypothetical conserved gene. (Os06t0353400-02)",6,14418163,14428791,"GO:0090502;GO:0003676","RNA phosphodiester bond hydrolysis, endonucleolytic;nucleic acid binding","The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS04T0568400-01",0.17642856122324,0.43516478424446303,-0.09985569569207339,"OS04G0568400",null,636.01444572192,632.00878173402,628.354062985047,554.871787476942,"no","OS04G0568400","Os04g0568400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JAY4]","WD40 repeat-like domain containing protein. (Os04t0568400-01)",4,28564644,28567732]
["OS03T0431550-01",0.17715414517070102,0.435821068460335,0.20723850353128,"OS03G0431550",null,379.759137717456,441.754975163028,436.137496479736,512.281042046656,"no","OS03G0431550","Os03g0431550 protein [Source:UniProtKB/TrEMBL;Acc:C7IZP7]","Glycosyl transferase, family 20 domain containing protein. (Os03t0431550-01)",3,18112904,18116812,"GO:0070413;GO:0005992;GO:0016791;GO:0005737;GO:0016311;GO:0003824","trehalose metabolism in response to stress;trehalose biosynthetic process;phosphatase activity;cytoplasm;dephosphorylation;catalytic activity","The chemical reactions and pathways involving trehalose that occur as a result of a stimulus indicating the organism is under stress. [GOC:jp, GOC:mah, PMID:9797333];The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS09T0371200-01",0.177743344128239,0.43635312573772206,-0.114616192697399,"OS09G0371200",null,405.050041172273,376.940179806155,352.592864483359,369.675195721694,"no","OS09G0371200","Os09g0371200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKZ3]","Major facilitator superfamily protein. (Os09t0371200-01)",9,12360645,12363883,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0167500-00",0.178016111503413,0.43645971910761405,-0.97073179176444,"OS11G0167500",null,13.25030095254,15.4399539511568,11.7084608009636,2.93066084935005,"no","OS11G0167500","Os11g0167500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZ90]","Similar to Serine esterase family protein, expressed. (Os11t0167500-00)",11,3259535,3260938,"GO:0044255;GO:0052689","cellular lipid metabolic process;carboxylic ester hydrolase activity","The chemical reactions and pathways involving lipids, as carried out by individual cells. [GOC:jl];Catalysis of the hydrolysis of a carboxylic ester bond. [EC:3.1.1, EC:3.1.1.1, GOC:curators]"]
["OS09T0392100-01",0.17819573065138403,0.43657277773901604,0.0731235589096686,"OS09G0392100",null,762.401931730763,758.616404133506,841.057767535885,759.041159981662,"no","OS09G0392100","Os09g0392100 protein [Source:UniProtKB/TrEMBL;Acc:Q6H415]","Lipase, class 3 family protein. (Os09t0392100-01)",9,13559548,13563053,"GO:0006629;GO:0016787","lipid metabolic process;hydrolase activity","The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS04T0441900-01",0.178682362240655,0.437077944849999,-0.0659260245560501,"OS04G0441900",null,2608.93335787586,2914.29419235084,2631.30402243695,2645.21156104481,"no","OS04G0441900","Os04g0441900 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCZ5]","Cleft lip and palate transmembrane 1 family protein. (Os04t0441900-01);Similar to transmembrane CLPTM1 family protein. (Os04t0441900-02);Similar to predicted protein. (Os04t0441900-03)",4,21989594,21995101,"GO:0016021;GO:0016020","integral component of membrane;membrane","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0160100-01",0.17948791690815102,0.43818482263572606,0.110918996072146,"OS03G0160100",null,1616.11715678566,1818.83304762878,1800.17584814815,1909.28157366984,"no","OS03G0160100","EDR1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10RG4]","Mitogen-activated protein kinase kinase kinase (MAPKKK), Disease resistance, Defense/stress response (Os03t0160100-01)",3,3201345,3208276,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS12T0441600-00",0.17994256390757302,0.438370561558422,-2.3894537516053,"OS12G0441600",null,9.17328527483539,6.17598158046274,0.9757050667469671,1.9537738995667,"no","OS12G0441600","Os12g0441600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9M0]","O-methyltransferase, family 2 domain containing protein. (Os12t0441600-00)",12,14750544,14752232,"GO:0019438;GO:0008757;GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740","aromatic compound biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity","The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0731500-01",0.18008496239794503,0.438373769113689,-2.06823448403407,"OS03G0731500",null,172.544539708542,174.253317987953,0.00535884303033599,82.6889817072248,"no","OS03G0731500","Major surface like glycoprotein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q6AVG4]","Similar to Major surface glycoprotein-like. (Os03t0731500-01);Similar to Major surface glycoprotein-like. (Os03t0731500-02)",3,29937122,29946682,"GO:0004222;GO:0006508;GO:0016020;GO:0007155","metalloendopeptidase activity;proteolysis;membrane;cell adhesion","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. [GOC:hb, GOC:pf]"]
["OS04T0544900-01",0.180053851176448,0.438373769113689,-0.0316867283205603,"OS04G0544900",null,812.345373782645,851.256127840447,833.25212700191,794.209090173863,"no","OS04G0544900","Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [Source:Projected from Arabidopsis thaliana (AT1G02145) UniProtKB/Swiss-Prot;Acc:A8MR93]","Alg9-like mannosyltransferase family protein. (Os04t0544900-01)",4,27275331,27282735,"GO:0006487;GO:0005783;GO:0005789;GO:0016757;GO:0097502;GO:0000030;GO:0016020;GO:0016021;GO:0030433","protein N-linked glycosylation;endoplasmic reticulum;endoplasmic reticulum membrane;transferase activity, transferring glycosyl groups;mannosylation;mannosyltransferase activity;membrane;integral component of membrane;ubiquitin-dependent ERAD pathway","A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. [GOC:pr, RESID:AA0151, RESID:AA0156, RESID:AA0327];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The covalent attachment of a mannose residue to a substrate molecule. [GOC:cjm];Catalysis of the transfer of a mannosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [GOC:ai, GOC:cjm];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858]"]
["OS07T0208100-01",0.180810098942933,0.438491041665699,0.403079163202041,"OS07G0208100",null,86.6365831512231,100.874365814225,147.331465078792,100.619355827685,"no","OS07G0208100","Os07g0208100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3T1]","Similar to Polygalacturonase A. (Os07t0208100-01)",7,5822759,5824346,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS05T0241000-01",0.18110784923744802,0.43876422977574303,0.0184786291533705,"OS05G0241000",null,1063.08183796148,1152.84989501971,1127.91505715949,1116.58178360237,"no","OS05G0241000","Os05g0241000 protein [Source:UniProtKB/TrEMBL;Acc:Q60EV1]","Prefoldin domain containing protein. (Os05t0241000-01)",5,8584562,8589468,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0526600-02",0.18153340999762801,0.43907621063126906,-0.25987052813675204,"OS09G0526600","HSFB2C",145.580136258833,165.56981101931,126.208146978244,133.652734788019,"no","OS09G0526600","Heat stress transcription factor B-2c [Source:UniProtKB/Swiss-Prot;Acc:Q652B0]","Similar to Isoform 2 of Heat stress transcription factor B-2c. (Os09t0526600-01);Similar to Heat shock factor protein 3 (HSF 3) (Heat shock transcription factor 3) (HSTF 3). (Os09t0526600-02);Similar to Isoform 2 of Heat stress transcription factor B-2c. (Os09t0526600-03)",9,20591252,20595143,"GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS07T0587500-01",0.181903102318092,0.439209948367888,-0.42437644846232303,"OS07G0587500",null,59.1167273267169,67.7789268734146,40.0039077366256,54.5537505959149,"no","OS07G0587500","Arm repeat-containing protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIQ0]","Armadillo-like helical domain containing protein. (Os07t0587500-01)",7,23911800,23913680,"GO:0005634;GO:0005737","nucleus;cytoplasm","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS07T0663500-00",0.18244277813771,0.43949203719446306,-0.36030971074252505,"OS07G0663500",null,120.306512396471,87.1834735605468,78.3945315651757,83.2396135712408,"no","OS07G0663500","Os07g0663500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9T1]","Similar to Short-chain dehydrogenase/reductase (Fragment). (Os07t0663500-00)",7,27991215,27992591]
["OS11T0592700-00",0.182953365569675,0.43972386299347904,0.22600530199302202,"OS11G0592700",null,176.330928060725,184.250117150472,233.193510952525,188.539181308186,"no","OS11G0592700","NA","GTP1/OBG domain containing protein. (Os11t0592700-00)","NA","NA","NA","NA","NA","NA"]
["OS03T0283100-01",0.18353250871247,0.43972386299347904,0.681217928377811,"OS03G0283100","GSTZ5",67.464463046904,56.7761805926401,123.78209482527,75.4368899773876,"no","OS03G0283100","Protein IN2-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8H8U5]","Similar to In2-1 protein. (Os03t0283100-01);Similar to In2-1 protein. (Os03t0283100-02)",3,9712224,9714920,"GO:0005737;GO:0004364;GO:0006749;GO:0010731","cytoplasm;glutathione transferase activity;glutathione metabolic process;protein glutathionylation","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. [GOC:BHF, GOC:dph, GOC:rl, GOC:tb]"]
["OS06T0127200-01",0.18297042030693,0.43972386299347904,0.12325144634113301,"OS06G0127200",null,314.949461102682,330.415014554756,360.035169629631,342.887319373955,"no","OS06G0127200","Os06g0127200 protein [Source:UniProtKB/TrEMBL;Acc:Q5VRK0]","SET domain containing protein. (Os06t0127200-01)",6,1438381,1445164,"GO:0018026;GO:0016279","peptidyl-lysine monomethylation;protein-lysine N-methyltransferase activity","The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine. [RESID:AA0076];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate. [PMID:12054878]"]
["OS12T0127650-00",0.18326302420923102,0.43972386299347904,-0.31942892653951804,"OS12G0127650",null,356.549191483774,445.896289225156,278.411461221974,364.657942688347,"no","OS12G0127650","Os12g0127650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6S8]","Similar to Ulp1 protease family, C-terminal catalytic domain containing protein, expressed. (Os12t0127650-00)",12,1323547,1326079,"GO:0006508;GO:0008234;GO:0008233;GO:0016020;GO:0016021","proteolysis;cysteine-type peptidase activity;peptidase activity;membrane;integral component of membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0757400-01",0.18415508332348202,0.44028333777453404,0.33969390082841505,"OS03G0757400",null,115.415893064482,90.9073682390892,142.336863960622,118.762760674937,"no","OS03G0757400","Os03g0757400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DNE9]","Hypothetical protein. (Os03t0757400-01)",3,31298949,31300800]
["OS01T0863100-01",0.18428950152602203,0.44042653712633306,-0.13418369086009602,"OS01G0863100",null,430.595728261853,384.845628797341,388.0396153769,354.978526934936,"no","OS01G0863100","Os01g0863100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAV8]","Similar to H0423H10.6 protein. (Os01t0863100-01)",1,37349398,37352086]
["OS03T0321900-02",0.18471651525131702,0.44058304538605203,-0.187090444389963,"OS03G0321900",null,230.854394288163,227.679012223809,212.332362278685,190.432102097717,"no","OS03G0321900","Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10M63]","Similar to tRNA-specific adenosine deaminase. (Os03t0321900-01);CMP/dCMP deaminase, zinc-binding domain containing protein. (Os03t0321900-02)",3,11653146,11656600,"GO:0009451;GO:0016787;GO:0008270;GO:0003824;GO:0019239","RNA modification;hydrolase activity;zinc ion binding;catalytic activity;deaminase activity","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3). [GOC:jl]"]
["OS01T0817700-02",0.185482867916192,0.44072737444202,-0.12794479752280502,"OS01G0817700",null,12997.4486964058,13440.1677288691,11165.1660749576,13028.8004498069,"no","OS01G0817700","Os01g0817700 protein [Source:UniProtKB/TrEMBL;Acc:Q5QMK7]","Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I). (Os01t0817700-01);Similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I). (Os01t0817700-02)",1,34804310,34808023,"GO:0004619;GO:0030145;GO:0046872;GO:0005737;GO:0008152;GO:0006007;GO:0003824","phosphoglycerate mutase activity;manganese ion binding;metal ion binding;cytoplasm;metabolic process;glucose catabolic process;catalytic activity","Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate. [EC:5.4.2.1];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0110500-01",0.18519624572484603,0.44072737444202,-0.0336863850193594,"OS08G0110500",null,869.42359327051,894.487998903686,828.373601668175,894.828446001548,"no","OS08G0110500","RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q6ZC56]","U-box/ARM repeat E3 ligase, Stress response, Regulation of cell death, Blast disease resistance (Os08t0110500-01)",8,551574,556921,"GO:0005634;GO:0005737;GO:0016567;GO:0004842;GO:0016740","nucleus;cytoplasm;protein ubiquitination;ubiquitin-protein transferase activity;transferase activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0174700-03",0.18592918939032702,0.44106286104887604,0.6583892132044471,"OS01G0174700","PID2",24.5568559521443,18.11946822885,35.8072136251489,31.5496578813445,"no","OS01G0174700","Protein kinase PINOID 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94E49]","Similar to Akt (Fragment). (Os01t0174700-01);Similar to predicted protein. (Os01t0174700-03)",1,3835129,3837642,"GO:0006468;GO:0005524;GO:0004672;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0005886;GO:0009785;GO:0016310;GO:0016301;GO:0007275;GO:0023014;GO:0000160;GO:0000155;GO:0009734;GO:0000166;GO:0016740;GO:0048825","protein phosphorylation;ATP binding;protein kinase activity;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;plasma membrane;blue light signaling pathway;phosphorylation;kinase activity;multicellular organism development;signal transduction by protein phosphorylation;phosphorelay signal transduction system;phosphorelay sensor kinase activity;auxin-activated signaling pathway;nucleotide binding;transferase activity;cotyledon development","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. [GOC:lr, GOC:sm];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]"]
["OS01T0616100-02",0.18632783827544902,0.44128613447456405,-0.0760826406058825,"OS01G0616100",null,802.147880741873,863.264147110197,806.688764030424,773.171004757143,"no","OS01G0616100","Os01g0616100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V581]","Similar to kinase family protein. (Os01t0616100-01);Hypothetical conserved gene. (Os01t0616100-02)",1,24430016,24436246,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0381300-01",0.186782930620283,0.44137756288301705,0.052610799120722196,"OS03G0381300",null,2275.9940020786,2161.59355316196,2183.62793937971,2418.77208766357,"no","OS03G0381300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q75M67]","CS domain domain containing protein. (Os03t0381300-01)",3,15118428,15121526]
["OS04T0625300-01",0.18693145160527,0.44137756288301705,0.07347865503034309,"OS04G0625300",null,475.991580372014,498.195847490661,529.807851243603,495.281683540158,"no","OS04G0625300","Os04g0625300 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9Y4]","Similar to OSIGBa0148A10.3 protein. (Os04t0625300-01)",4,31788464,31790490]
["OS03T0256800-00",0.187202646598032,0.441629847764306,0.40022925187892805,"OS03G0256800",null,95.7522141829738,62.8492878277185,114.896997903077,94.4121963569627,"no","OS03G0256800","Os03g0256800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KGY7]","Similar to RhoGAP domain containing protein, expressed. (Os03t0256800-00)",3,8294652,8306315,"GO:0005096;GO:0043547;GO:0007165","GTPase activator activity;positive regulation of GTPase activity;signal transduction","Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]"]
["OS03T0243800-00",0.187731699963563,0.442127370594501,-0.129473510043151,"OS03G0243800",null,309.853191505551,317.03372113042,292.71152002409,280.366554587821,"no","OS03G0243800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P78]","Nicotinamide N-methyltransferase, putative domain containing protein. (Os03t0243800-00)",3,7603131,7607537]
["OS04T0692750-00",0.18816109208116802,0.44230281713916403,0.08395499030999509,"OS04G0692750",null,653.532079474049,685.011175247789,742.501434372588,676.246950882908,"no","OS04G0692750",null,"SNF2 family chromatin-remodeling helicase, Syncytial endosperm development (Os04t0692750-01)",4,35452216,35454369,"GO:0005524","ATP binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS04T0497700-02",0.188609279825242,0.44249943503486405,-0.751832104150125,"OS04G0497700",null,65.8711308606174,94.2393785210914,67.1378134666479,27.9436426680069,"no","OS04G0497700","OSJNBa0067K08.19 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQH7]","Similar to CONSTANS-like protein. (Os04t0497700-01);Similar to OSIGBa0092E01.11 protein. (Os04t0497700-02)",4,24889983,24891483,"GO:0009909;GO:0009416;GO:0005634;GO:0005622;GO:0008270","regulation of flower development;response to light stimulus;nucleus;intracellular;zinc ion binding","Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS06T0538200-01",0.18861842571547,0.44249943503486405,-0.0411837777503014,"OS06G0538200",null,1135.44886624074,1112.7060147467,1145.47774836094,1039.40771456948,"no","OS06G0538200","Os06g0538200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXX3]","Conserved hypothetical protein. (Os06t0538200-01)",6,20169381,20177210]
["OS04T0659100-03",0.18911462092124,0.44257601672813,0.22726523363081103,"OS04G0659100","GLN2",4976.7035722421,6451.53033482332,6818.23695156434,6559.81176163453,"no","OS04G0659100","Glutamine synthetase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P14655]","Glutamine synthetase shoot isozyme, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31). (Os04t0659100-01);Similar to Isoform 2 of Glutamine synthetase, chloroplastic. (Os04t0659100-02);Glutamine synthetase shoot isozyme, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31). (Os04t0659100-03)",4,33624428,33631025,"GO:0004356;GO:0006542;GO:0016874;GO:0009536;GO:0009507;GO:0006807;GO:0005524;GO:0000166;GO:0003824;GO:0009651;GO:0009735;GO:0046686;GO:0005739;GO:0009535;GO:0009570;GO:0009579;GO:0009941;GO:0016020;GO:0022626;GO:0048046","glutamate-ammonia ligase activity;glutamine biosynthetic process;ligase activity;plastid;chloroplast;nitrogen compound metabolic process;ATP binding;nucleotide binding;catalytic activity;response to salt stress;response to cytokinin;response to cadmium ion;mitochondrion;chloroplast thylakoid membrane;chloroplast stroma;thylakoid;chloroplast envelope;membrane;cytosolic ribosome;apoplast","Catalysis of the reaction: L-glutamate + ATP + NH(4)(+) = L-glutamine + ADP + 2 H(+) + phosphate. [EC:6.3.1.2, RHEA:16172];The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid. [GOC:ai];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A ribosome located in the cytosol. [GOC:mtg_sensu];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS01T0784900-00",0.189459354817301,0.44266534043127503,0.317480669297724,"OS01G0784900",null,107.284903637848,103.78352778756,112.128021603289,150.89543879995,"no","OS01G0784900","Os01g0784900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V911]","Conserved hypothetical protein. (Os01t0784900-00)",1,33272134,33274419,"GO:0045944;GO:0006366;GO:0001228;GO:0001046;GO:0005634;GO:0046983","positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;core promoter sequence-specific DNA binding;nucleus;protein dimerization activity","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS12T0615800-01",0.18980149286892,0.442860486492382,0.0427124597756302,"OS12G0615800",null,760.363423891911,798.760284406514,830.325011801669,775.648238127979,"no","OS12G0615800","G-patch domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QM64]","D111/G-patch domain containing protein. (Os12t0615800-01)",12,26124065,26126841,"GO:0005681;GO:0008380;GO:0006397;GO:0005634;GO:0006355;GO:0003676;GO:0003677;GO:0071008;GO:0000390","spliceosomal complex;RNA splicing;mRNA processing;nucleus;regulation of transcription, DNA-templated;nucleic acid binding;DNA binding;U2-type post-mRNA release spliceosomal complex;spliceosomal complex disassembly","Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. [GOC:editors, GOC:mah, ISBN:0198547684, PMID:19239890];The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and the U2, U5 and U6 snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:19239890];Disassembly of a spliceosomal complex with the ATP-dependent release of the product RNAs, one of which is composed of the joined exons. In cis splicing, the other product is the excised sequence, often a single intron, in a lariat structure. [GOC:krc, ISBN:0879695897]"]
["OS02T0557700-01",0.19028440380817901,0.443113143605169,-0.00226536455748074,"OS02G0557700",null,926.501812758374,888.312017323224,937.652569143835,874.313820056097,"no","OS02G0557700","Os02g0557700 protein [Source:UniProtKB/TrEMBL;Acc:Q0E0D3]","Short-chain dehydrogenase/reductase SDR domain containing protein. (Os02t0557700-01)",2,21122299,21125132,"GO:0055114;GO:0016491;GO:0016616;GO:0006760;GO:0005829","oxidation-reduction process;oxidoreductase activity;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;folic acid-containing compound metabolic process;cytosol","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. [CHEBI:37445, GOC:ai, GOC:mah];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS10T0357800-01",0.19075880175588703,0.44356974741197,0.24017753990145702,"OS10G0357800",null,173.014317482511,137.133283125262,193.727432084876,172.599686103995,"no","OS10G0357800","tRNA (guanine(26)-N(2))-dimethyltransferase [Source:UniProtKB/TrEMBL;Acc:Q339G6]","N2,N2-dimethylguanosine tRNA methyltransferase family protein. (Os10t0357800-01)",10,10932181,10938990,"GO:0030488;GO:0004809;GO:0005739;GO:0005634;GO:0008033;GO:0003723;GO:0032259;GO:0008168;GO:0002940;GO:0000049;GO:0016740","tRNA methylation;tRNA (guanine-N2-)-methyltransferase activity;mitochondrion;nucleus;tRNA processing;RNA binding;methylation;methyltransferase activity;tRNA N2-guanine methylation;tRNA binding;transferase activity","The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah];Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing guanine = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine. [EC:2.1.1.32];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];The process whereby a guanine in a tRNA is methylated at the N2 position of guanine. [ISBN:155581073X, ISBN:1555811337];Interacting selectively and non-covalently with transfer RNA. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0643300-02",0.19086816635019102,0.443669848214756,-0.0364569190629734,"OS03G0643300","OAT",738.959091583962,696.856588328879,717.143224059021,682.843977898561,"no","OS03G0643300","Ornithine aminotransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q10G56]","Ornithine delta-aminotransferase, Abiotic stress tolerance (Os03t0643300-02)",3,24810090,24818067,"GO:0009737;GO:0009414;GO:0009741;GO:0042802;GO:0055129;GO:0030170;GO:0009408;GO:0008483;GO:0004587;GO:0005759;GO:0006979;GO:0005739;GO:0009753;GO:0009733;GO:0009413;GO:0009651;GO:0003824;GO:0016740;GO:0008270;GO:0006561;GO:0006593;GO:0009816;GO:0019544;GO:0042538;GO:0051646","response to abscisic acid;response to water deprivation;response to brassinosteroid;identical protein binding;L-proline biosynthetic process;pyridoxal phosphate binding;response to heat;transaminase activity;ornithine-oxo-acid transaminase activity;mitochondrial matrix;response to oxidative stress;mitochondrion;response to jasmonic acid;response to auxin;response to flooding;response to salt stress;catalytic activity;transferase activity;zinc ion binding;proline biosynthetic process;ornithine catabolic process;defense response to bacterium, incompatible interaction;arginine catabolic process to glutamate;hyperosmotic salinity response;mitochondrion localization","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. [GOC:jl];Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl];The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [GOC:ecd];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Catalysis of the reaction: L-ornithine + a 2-oxo acid = L-glutamate 5-semialdehyde + an L-amino acid. [EC:2.6.1.13];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating flooding, short-term immersion in water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. [GOC:jl, ISBN:0192801023];A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr];The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process in which a mitochondrion or mitochondria are transported to, and/or maintained in, a specific location within the cell. [GOC:ai]"]
["OS05T0446800-02",0.191347801893221,0.444069786344915,0.160393554246334,"OS05G0446800",null,714.882616377298,772.807272605497,832.276359828291,830.353907315847,"no","OS05G0446800","Arginyl-tRNA--protein transferase [Source:UniProtKB/TrEMBL;Acc:Q688J5]","Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2. (Os05t0446800-01);Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2. (Os05t0446800-02);Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2. (Os05t0446800-03)",5,21903232,21911328,"GO:0005737;GO:2001070;GO:0006420;GO:0004814;GO:0016746;GO:0030246;GO:0000166;GO:0005524;GO:0016740;GO:0004057;GO:0016598","cytoplasm;starch binding;arginyl-tRNA aminoacylation;arginine-tRNA ligase activity;transferase activity, transferring acyl groups;carbohydrate binding;nucleotide binding;ATP binding;transferase activity;arginyltransferase activity;protein arginylation","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with starch. [GOC:mengo_curators];The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510];Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). [EC:6.1.1.19];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: L-arginyl-tRNA + protein = tRNA + L-arginyl-protein. [EC:2.3.2.8];The conjugation of arginine to the N-terminal aspartate or glutamate of a protein; required for the degradation of the protein via the ubiquitin pathway. [PMID:17896865]"]
["OS06T0155500-00",0.191823983855362,0.444258208403067,-0.493070568469512,"OS06G0155500",null,58.0974734072908,42.2025407998287,40.0039077366256,31.2603823930672,"no","OS06G0155500","Os06g0155500 protein [Source:UniProtKB/TrEMBL;Acc:Q5VMB4]","Transferase family protein. (Os06t0155500-00)",6,2861696,2863179,"GO:0016410;GO:0016747","N-acyltransferase activity;transferase activity, transferring acyl groups other than amino-acyl groups","Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule. [GOC:ai];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl]"]
["OS12T0640800-01",0.19218969069287,0.444482639034166,-0.004782279277663001,"OS12G0640800",null,748.132376858797,753.469752816454,771.782707796851,724.850116739245,"no","OS12G0640800","Os12g0640800 protein [Source:UniProtKB/TrEMBL;Acc:Q0ILJ9]","Similar to Serine/threonine-protein kinase PRP4 homolog (EC 2.7.1.37) (PRP4 pre- mRNA processing factor 4 homolog) (PRP4 kinase). (Os12t0640800-01)",12,27481269,27482786,"GO:0006468;GO:0005634;GO:0016310;GO:0016301;GO:0005524;GO:0004672","protein phosphorylation;nucleus;phosphorylation;kinase activity;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0547000-01",0.19279514958086702,0.444801178677373,0.0293916312277069,"OS01G0547000",null,566.405383256905,595.515633191631,603.219910794437,582.615376850789,"no","OS01G0547000","Os01g0547000 protein [Source:UniProtKB/TrEMBL;Acc:Q8RYR1]","Similar to LRR19. (Os01t0547000-01)",1,20327992,20334833,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS12T0176500-01",0.19292566873437603,0.444801178677373,-0.0712384484428374,"OS12G0176500","RFC2",960.137192099437,855.373448894089,866.426099271307,861.614289708914,"no","OS12G0176500","Replication factor C subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXM3]","Similar to Replication factor C subunit RFC4. (Os12t0176500-01)",12,3873379,3877258,"GO:0006261;GO:0006281;GO:0005634;GO:0006260;GO:0005663;GO:0003689;GO:0003677;GO:0005524;GO:0000166;GO:0005730","DNA-dependent DNA replication;DNA repair;nucleus;DNA replication;DNA replication factor C complex;DNA clamp loader activity;DNA binding;ATP binding;nucleotide binding;nucleolus","A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides. [PMID:14614842, PMID:14646196, PMID:16172520];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex. [GOC:mah, GOC:vw, PMID:16082778];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732]"]
["OS10T0502600-02",0.19315536737868202,0.444842664266055,-0.39351266627757203,"OS10G0502600",null,85.0149803270686,96.6610446176098,80.4541303715836,57.8510676361247,"no","OS10G0502600","Membrane steroid binding protein 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q9FVZ7]","Cytochrome b5 domain containing protein. (Os10t0502600-01);Similar to Membrane steroid-binding protein 1 (Fragment). (Os10t0502600-02);Cytochrome b5 domain containing protein. (Os10t0502600-03)",10,19171760,19174055,"GO:0020037;GO:0012505;GO:0016020;GO:0008289;GO:0005886;GO:0016021;GO:0005496","heme binding;endomembrane system;membrane;lipid binding;plasma membrane;integral component of membrane;steroid binding","Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. [GOC:lh];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Interacting selectively and non-covalently with a lipid. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene. [GOC:jl, ISBN:0198506732]"]
["OS06T0340200-03",0.193559443294397,0.445042469406272,-2.20536465038288,"OS06G0340200",null,20.5542079049321,4.54042011637408,0,5.44126467383135,"no","OS06G0340200","Os06g0340200 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z887]","Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-01);Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-02);Hypothetical conserved gene. (Os06t0340200-03)",6,13584735,13591992,"GO:0016020;GO:0016021;GO:0046872;GO:0008270","membrane;integral component of membrane;metal ion binding;zinc ion binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS11T0170400-02",0.19408592745303602,0.445501882203911,-0.35280748228025205,"OS11G0170400",null,113.627869035495,129.180272791003,111.908983191784,78.2240648706915,"no","OS11G0170400","Os11g0170400 protein [Source:UniProtKB/TrEMBL;Acc:B9G9L8]","Conserved hypothetical protein. (Os11t0170400-01);Conserved hypothetical protein. (Os11t0170400-02)",11,3425822,3433332]
["OS10T0559700-02",0.194591646076668,0.445865004569848,0.26734399716704904,"OS10G0559700",null,148.896348105762,121.854175813957,179.863589669127,146.009027075502,"no","OS10G0559700",null,"Similar to Agenet domain containing protein, expressed. (Os10t0559700-01);Similar to Agenet domain containing protein, expressed. (Os10t0559700-02)",10,22030634,22036252]
["OS08T0103500-01",0.19526672107971502,0.44658503874437405,-0.632378379619776,"OS08G0103500",null,301.513841255701,270.661872900011,112.245505102841,256.871930068285,"no","OS08G0103500","MAP3K-like protein [Source:UniProtKB/TrEMBL;Acc:Q69U53]","PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os08t0103500-01);PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os08t0103500-02)",8,195890,200315,"GO:0008081;GO:0006629;GO:0016020;GO:0016021","phosphoric diester hydrolase activity;lipid metabolic process;membrane;integral component of membrane","Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0693400-01",0.195589523036708,0.446886614161328,-0.10557663713936401,"OS03G0693400",null,429.883406636055,415.559466516418,372.928457343545,412.854369034622,"no","OS03G0693400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10EV2]","Protein of unknown function DUF538 family protein. (Os03t0693400-01)",3,27763027,27766036]
["OS06T0618100-01",0.195774216484792,0.44693578384210003,-0.125921153123068,"OS06G0618100",null,397.5090285762,431.289380368981,405.893307766738,353.633075821572,"no","OS06G0618100","Os06g0618100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WZ20]","K Homology, type 1, subgroup domain containing protein. (Os06t0618100-01)",6,24808827,24811960,"GO:0003723;GO:0046872;GO:0003677;GO:0003676","RNA binding;metal ion binding;DNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS08T0539600-01",0.196452375811794,0.44761924561805805,-0.439505388322441,"OS08G0539600",null,53.00120381016,74.1117789655528,40.9796128033726,52.7518952883008,"no","OS08G0539600","Os08g0539600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIX5]","Similar to Ankyrin repeat domain-containing protein 2. (Os08t0539600-01)",8,26982655,26986691]
["OS02T0121000-01",0.197147345497893,0.44829262075199605,0.0136611694840722,"OS02G0121000",null,581.993987992334,594.952892251244,600.058616049385,588.085943769576,"no","OS02G0121000","Os02g0121000 protein [Source:UniProtKB/TrEMBL;Acc:Q6YUS0]","Similar to Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS). (Os02t0121000-01)",2,1090428,1095969,"GO:0016876;GO:0043039;GO:0000049;GO:0006418;GO:0006412;GO:0016874;GO:0004812;GO:0005737;GO:0000166;GO:0005524;GO:0008270;GO:0004818;GO:0006424","ligase activity, forming aminoacyl-tRNA and related compounds;tRNA aminoacylation;tRNA binding;tRNA aminoacylation for protein translation;translation;ligase activity;aminoacyl-tRNA ligase activity;cytoplasm;nucleotide binding;ATP binding;zinc ion binding;glutamate-tRNA ligase activity;glutamyl-tRNA aminoacylation","Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound. [EC:6.1.1, GOC:mah];The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. [GOC:ma, GOC:mah, MetaCyc:Aminoacyl-tRNAs];Interacting selectively and non-covalently with transfer RNA. [GOC:ai];The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). [EC:6.1.1.17];The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA. [GOC:mcc, ISBN:0716730510]"]
["OS08T0461600-00",0.19747988294281102,0.448372551043671,1.28755724841214,"OS08G0461600",null,7.80042127823744,4.86401196457375,15.4359954016206,15.4797065657847,"no","OS08G0461600","Os08g0461600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGU7]","Zinc finger, CCHC-type domain containing protein. (Os08t0461600-00)",8,22663016,22669277,"GO:0006278;GO:0003676;GO:0008270;GO:0016020;GO:0016021;GO:0003964","RNA-dependent DNA biosynthetic process;nucleic acid binding;zinc ion binding;membrane;integral component of membrane;RNA-directed DNA polymerase activity","A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. [EC:2.7.7.49]"]
["OS12T0578400-01",0.19796452670817202,0.44871371911774505,0.0270725177774216,"OS12G0578400",null,1280.18292279925,1371.06791086273,1299.63914890696,1401.83277293911,"no","OS12G0578400","Heparanase-like protein 2, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN56]","Glycoside hydrolase family 79, N-terminal protein. (Os12t0578400-01)",12,23931409,23935656,"GO:0009505;GO:0016798;GO:0005516;GO:0008152;GO:0016787;GO:0016020;GO:0004566","plant-type cell wall;hydrolase activity, acting on glycosyl bonds;calmodulin binding;metabolic process;hydrolase activity;membrane;beta-glucuronidase activity","A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: a beta-D-glucuronoside + H2O = an alcohol + D-glucuronate. [EC:3.2.1.31]"]
["OS02T0711400-01",0.19838605221642,0.44890317488639303,0.282181952355051,"OS02G0711400",null,163.080627108185,116.314319765382,167.821271480478,171.932103161869,"no","OS02G0711400","Os02g0711400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIR5]","Conserved hypothetical protein. (Os02t0711400-01)",2,29471779,29472570]
["OS04T0439400-01",0.19846128611913802,0.448951042219186,1.31815711481253,"OS04G0439400",null,13.25030095254,5.14665131705228,34.1496773361438,11.7226433974002,"no","OS04G0439400","Os04g0439400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WAJ7]","Similar to H0525C06.6 protein. (Os04t0439400-01)",4,21864503,21867815,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS03T0262100-01",0.199118849290247,0.44949142002283804,-0.0805821858253439,"OS03G0262100",null,515.742483229634,553.779681714825,522.977915776374,488.443474891674,"no","OS03G0262100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10NR2]","Exon junction complex, Pym domain containing protein. (Os03t0262100-01)",3,8568445,8571825,"GO:0010628;GO:0005654;GO:0005730;GO:0005737","positive regulation of gene expression;nucleoplasm;nucleolus;cytoplasm","Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];That part of the nuclear content other than the chromosomes or the nucleolus. [GOC:ma, ISBN:0124325653];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS05T0208500-03",0.199429064971674,0.44965246740624704,-0.00173319210017641,"OS05G0208500",null,2854.78134698858,2881.104633287,2707.20327800924,3021.79599177252,"no","OS05G0208500","Os05g0208500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJH6]","Hypothetical protein. (Os05t0208500-01);Hypothetical conserved gene. (Os05t0208500-03)",5,6721756,6723481]
["OS06T0142500-00",0.200196221768066,0.45043850363562804,0.17140566019571402,"OS06G0142500",null,359.78970102464,298.286207706534,389.607880361058,351.487723909399,"no","OS06G0142500","Os06g0142500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WSX2]","Similar to Wall-associated kinase 3. (Os06t0142500-00)",6,2230033,2233000,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0684100-01",0.20063436138829902,0.45082837996464203,0.041602384955353296,"OS07G0684100",null,480.068596049719,494.078526437019,508.34233977517,494.304796590375,"no","OS07G0684100","Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6Z4N3]","Similar to Thioredoxin-like 1. (Os07t0684100-01)",7,29011661,29013252,"GO:0009536;GO:0009507;GO:0005623;GO:0045454;GO:0055114","plastid;chloroplast;cell;cell redox homeostasis;oxidation-reduction process","Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS04T0610000-01",0.20072230561220902,0.45088108308458,0.6352329058102251,"OS04G0610000",null,79.7084342698584,177.702868420698,222.046632881636,177.761635383562,"no","OS04G0610000","Os04g0610000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JA97]","Similar to H0702G05.12 protein. (Os04t0610000-01);Similar to H0702G05.12 protein. (Os04t0610000-02)",4,30914219,30918316]
["OS09T0560500-01",0.20148088196420502,0.45135129039201,0.182644267226403,"OS09G0560500",null,232.389893629163,292.329794808569,300.517160558066,295.019858834571,"no","OS09G0560500","7,8-dihydroneopterin aldolase [Source:UniProtKB/TrEMBL;Acc:Q653D9]","Dihydroneopterin aldolase family protein. (Os09t0560500-01)",9,22272962,22274888,"GO:0046654;GO:0016829;GO:0004150;GO:0102083;GO:0006760;GO:0046656","tetrahydrofolate biosynthetic process;lyase activity;dihydroneopterin aldolase activity;7,8-dihydromonapterin aldolase activity;folic acid-containing compound metabolic process;folic acid biosynthetic process","The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of the reaction: 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine = 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + glycolaldehyde. [EC:4.1.2.25];Catalysis of the reaction: 7,8-dihydromonapterin <=> glycolaldehyde + 2-amino-6-(hydroxymethyl)-7,8-dihydropteridin-4-ol [EC:4.1.2.25];The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. [CHEBI:37445, GOC:ai, GOC:mah];The chemical reactions and pathways resulting in the formation of folic acid, pteroylglutamic acid. [GOC:ai]"]
["OS04T0170500-01",0.20180993543754602,0.45150475609109203,-0.326106330924181,"OS04G0170500",null,110.635546939589,150.066138657717,95.7135093867428,112.244691604666,"no","OS04G0170500","Os04g0170500 protein [Source:UniProtKB/TrEMBL;Acc:Q0JF27]","Zinc finger, CCHC-type domain containing protein. (Os04t0170500-01)",4,4816682,4822779,"GO:0006278;GO:0003676;GO:0008270;GO:0003964","RNA-dependent DNA biosynthetic process;nucleic acid binding;zinc ion binding;RNA-directed DNA polymerase activity","A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. [EC:2.7.7.49]"]
["OS05T0204900-02",0.202140640771473,0.45168156189457,-0.189674581360555,"OS05G0204900",null,1097.86685939887,1255.01212802778,1118.94953010311,944.062938668787,"no","OS05G0204900","Serine/threonine-protein phosphatase 5 [Source:Projected from Arabidopsis thaliana (AT2G42810) UniProtKB/Swiss-Prot;Acc:Q84XU2]","Similar to Type 5 protein serine/threonine phosphatase 62 kDa isoform. (Os05t0204900-01);Similar to serine/threonine-protein phosphatase 5. (Os05t0204900-02)",5,6529795,6537307,"GO:0004721;GO:0006470;GO:0016787;GO:0046906;GO:0010017;GO:0010019;GO:0046686;GO:1902325;GO:0005634;GO:0005635;GO:0005737;GO:0005829;GO:0009506;GO:0030176","phosphoprotein phosphatase activity;protein dephosphorylation;hydrolase activity;tetrapyrrole binding;red or far-red light signaling pathway;chloroplast-nucleus signaling pathway;response to cadmium ion;negative regulation of chlorophyll biosynthetic process;nucleus;nuclear envelope;cytoplasm;cytosol;plasmodesma;integral component of endoplasmic reticulum membrane","Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with a tetrapyrrole, a compound containing four pyrrole nuclei variously substituted and linked to each other through carbons at the alpha position. [CHEBI:26932, GOC:curators, ISBN:0198506732];The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:lr, GOC:mtg_far_red, GOC:sm];The process in which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis. [PMID:8972595];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai];Any process that stops, prevents or reduces the frequency, rate or extent of chlorophyll biosynthetic process. [GOC:TermGenie, PMID:23555952];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah]"]
["OS09T0329200-00",0.20263054806638603,0.451979886436753,-1.9760907718924399,"OS09G0329200",null,8.15403135540923,7.20531184387319,2.9271152002409,0.9768869497833491,"no","OS09G0329200","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q6K2Q2]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os09t0329200-00)",9,9790649,9792207,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0797000-01",0.20305245993321802,0.452099315450374,-0.115334749138483,"OS03G0797000",null,356.738871799154,321.151042184062,312.225621359029,313.580710880455,"no","OS03G0797000","Indole-3-glycerol phosphate lyase, chloroplast, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7Y1H9]","Similar to Indole synthase. (Os03t0797000-01)",3,33194541,33198077,"GO:0006568;GO:0004834;GO:0016829;GO:0008152;GO:0003824;GO:0000162","tryptophan metabolic process;tryptophan synthase activity;lyase activity;metabolic process;catalytic activity;tryptophan biosynthetic process","The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:0198547684];Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. [RHEA:10535];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:0471331309, MetaCyc:TRPSYN-PWY]"]
["OS05T0422600-00",0.203093188547521,0.452099315450374,-0.13364442240975402,"OS05G0422600",null,330.238269894074,378.793536935048,328.812607493728,317.488258679588,"no","OS05G0422600","Os05g0422600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKT2]","Hypothetical conserved gene. (Os05t0422600-00)",5,20728020,20728733]
["OS09T0531900-02",0.203513661077095,0.452430811708864,0.0197523589494988,"OS09G0531900",null,885.575878461233,952.564560503764,907.653120308202,955.826906004241,"no","OS09G0531900","Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q652K2]","Similar to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-). (Os09t0531900-01);Conserved hypothetical protein. (Os09t0531900-02)",9,20862643,20866739,"GO:0045489;GO:0047262;GO:0016757;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0005794;GO:0000139;GO:0071555;GO:0016740","pectin biosynthetic process;polygalacturonate 4-alpha-galacturonosyltransferase activity;transferase activity, transferring glycosyl groups;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity","The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];Catalysis of the reaction: UDP-D-galacturonate + 1,4-alpha-D-galacturonosyl(n) = 1,4-alpha-D-galacturonosyl(n+1) + UDP. [EC:2.4.1.43, MetaCyc:2.4.1.43-RXN];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0592500-01",0.204325244977443,0.4531656443735,-0.09183300060355949,"OS02G0592500",null,726.728044550848,818.317559411313,755.195721662152,694.566621295961,"no","OS02G0592500","Os02g0592500 protein [Source:UniProtKB/TrEMBL;Acc:Q69L70]","Folate receptor, conserved region domain containing protein. (Os02t0592500-01)",2,22930988,22933528,"GO:0016020;GO:0016021;GO:0006979","membrane;integral component of membrane;response to oxidative stress","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731]"]
["OS05T0151000-00",0.20467984871413902,0.45330762869984503,0.22946700828360603,"OS05G0151000",null,159.12606732813,130.867753554389,162.099286400957,177.8899723748,"no","OS05G0151000","DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A0P0WI29]","Similar to DNA-directed RNA polymerase. (Os05t0151000-00)",5,2936549,2944391,"GO:0000428;GO:0003899;GO:0009536;GO:0005736;GO:0005665;GO:0006360;GO:0001055;GO:0001054;GO:0006366;GO:0016779;GO:0009507;GO:0005634;GO:0006351;GO:0003677;GO:0008270;GO:0016740;GO:0005773;GO:0009506","DNA-directed RNA polymerase complex;DNA-directed 5'-3' RNA polymerase activity;plastid;DNA-directed RNA polymerase I complex;DNA-directed RNA polymerase II, core complex;transcription from RNA polymerase I promoter;RNA polymerase II activity;RNA polymerase I activity;transcription from RNA polymerase II promoter;nucleotidyltransferase activity;chloroplast;nucleus;transcription, DNA-templated;DNA binding;zinc ion binding;transferase activity;vacuole;plasmodesma","A protein complex that possesses DNA-directed RNA polymerase activity. [GOC:krc];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS03T0274700-01",0.20543280964679,0.45397669065329704,0.114176919877517,"OS03G0274700",null,318.00722286096,345.854968505913,373.695040564088,344.841093273522,"no","OS03G0274700","Os03g0274700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VW12]","Conserved hypothetical protein. (Os03t0274700-01)",3,9266080,9270202]
["OS08T0203100-01",0.20531130728538102,0.45397669065329704,-0.62095939780505,"OS08G0203100",null,35.9787003299603,25.7910000278356,16.6227053252456,23.5423241279733,"no","OS08G0203100","Os08g0203100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCT0]","Hypothetical conserved gene. (Os08t0203100-01)",8,5982519,5985990]
["OS07T0619700-01",0.205818299963894,0.45434091035803503,0.0695603845985016,"OS07G0619700",null,486.184119566276,448.787994846959,507.366634708423,473.790170644924,"no","OS07G0619700","Os07g0619700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNV6]","Hypothetical conserved gene. (Os07t0619700-01)",7,25611983,25616341]
["OS11T0220400-01",0.20620684651836202,0.45439342402403,1.36627291576194,"OS11G0220400",null,7.1347774359830805,3.08799079023137,17.5626912014454,8.79198254805014,"no","OS11G0220400","Os11g0220400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y148]","Similar to ATPase, AAA family protein, expressed. (Os11t0220400-01)",11,6288905,6291118,"GO:0005524","ATP binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS01T0654200-01",0.206948100813089,0.45508702707029103,0.0394775204078454,"OS01G0654200",null,834.76896001002,754.499083079864,804.956680066248,828.40013341628,"no","OS01G0654200","Os01g0654200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDF6]","Peptidase M50 domain containing protein. (Os01t0654200-01)",1,26522784,26527301,"GO:0004222;GO:0006508;GO:0016020;GO:0016021","metalloendopeptidase activity;proteolysis;membrane;integral component of membrane","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0522800-01",0.20764445460561,0.45580926692848206,-0.06599896057587501,"OS02G0522800",null,442.085577105337,417.74070111865,409.551058857632,411.826904764133,"no","OS02G0522800","Os02g0522800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJN7]","Peptidase C65, otubain domain containing protein. (Os02t0522800-01)",2,19067338,19072348]
["OS10T0458700-02",0.208097569459702,0.456121344966923,0.0764257756555357,"OS10G0458700",null,889.808671659033,874.930723898888,991.316347814918,869.42938530718,"no","OS10G0458700","Os10g0458700 protein [Source:UniProtKB/TrEMBL;Acc:Q337N3]","Hypothetical conserved gene. (Os10t0458700-01);Ribonuclease H domain containing protein. (Os10t0458700-02)",10,16840028,16845770,"GO:0004523;GO:0015074;GO:0090502;GO:0003676","RNA-DNA hybrid ribonuclease activity;DNA integration;RNA phosphodiester bond hydrolysis, endonucleolytic;nucleic acid binding","Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. [EC:3.1.26.4];The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS01T0622000-00",0.208188143860006,0.45618333007321904,-0.0694916647039584,"OS01G0622000",null,659.618276348893,659.694868235385,593.683538396128,663.587217247771,"no","OS01G0622000","Os01g0622000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5D1]","Similar to predicted protein. (Os01t0622000-00)",1,24813615,24814292,"GO:0016757;GO:0005794;GO:0016020;GO:0016021","transferase activity, transferring glycosyl groups;Golgi apparatus;membrane;integral component of membrane","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0540800-02",0.20859626886158902,0.45645560852738,-0.0206371424074427,"OS12G0540800",null,931.488041446525,1026.95071855051,973.303331198051,957.32020739646,"no","OS12G0540800","Kelch motif family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QP63]","Galactose oxidase/kelch, beta-propeller domain containing protein. (Os12t0540800-01);Hypothetical conserved gene. (Os12t0540800-02)",12,21619517,21624945]
["OS02T0543400-01",0.20922493575748802,0.45685377962545204,9.9905807869273E-3,"OS02G0543400",null,483.126357807997,496.13718696384,484.925418173243,501.143005238858,"no","OS02G0543400","Os02g0543400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESX9]","WD40 repeat-like domain containing protein. (Os02t0543400-01)",2,20182213,20186136]
["OS02T0820300-01",0.20941255031432401,0.45688614895578505,0.175977308184591,"OS02G0820300",null,198.7545142881,183.220786887061,210.752294417345,220.776450651037,"no","OS02G0820300","Kinesin light chain-like [Source:UniProtKB/TrEMBL;Acc:Q6K715]","Tetratricopeptide-like helical domain containing protein. (Os02t0820300-01)",2,35218480,35221097]
["OS10T0377150-00",0.209372153901518,0.45688614895578505,-0.24790445259192,"OS10G0377150",null,147.791818316792,132.783603979949,106.351852275419,129.925964321185,"no","OS10G0377150","Os10g0377150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XU16]","Hypothetical protein. (Os10t0377150-00)",10,12024100,12024661]
["OS02T0725300-01",0.21061546062482503,0.4574046923358,-0.0433605237220294,"OS02G0725300","CSLE2",1179.48484714944,1276.91709876696,1175.6048032396,1208.06785237643,"no","OS02G0725300","Cellulose synthase-like protein E2 [Source:UniProtKB/Swiss-Prot;Acc:Q0DXZ1]","Cellulose synthase family protein. (Os02t0725300-01);Similar to cDNA clone:J033042D19, full insert sequence. (Os02t0725300-02);Similar to cDNA clone:J033042D19, full insert sequence. (Os02t0725300-03);Similar to cDNA clone:J033042D19, full insert sequence. (Os02t0725300-04)",2,30148858,30153815,"GO:0030244;GO:0009833;GO:0016759;GO:0005794;GO:0005886;GO:0016760;GO:0016757;GO:0016020;GO:0016021;GO:0071555;GO:0016740;GO:0000139","cellulose biosynthetic process;plant-type primary cell wall biogenesis;cellulose synthase activity;Golgi apparatus;plasma membrane;cellulose synthase (UDP-forming) activity;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;cell wall organization;transferase activity;Golgi membrane","The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];Catalysis of the reaction: nucleoside-disphosphate-glucose + ((1,4)-beta-D-glucosyl)(n) = nucleoside-disphosphate + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12, EC:2.4.1.29];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah]"]
["OS04T0452400-01",0.21054109890705103,0.4574046923358,0.0204886284253686,"OS04G0452400",null,1096.87397769587,1217.07190186535,1155.13887125557,1191.90327747231,"no","OS04G0452400","Os04g0452400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCS2]","Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4). (Os04t0452400-01)",4,22567565,22573571,"GO:0016579;GO:0036459;GO:0006511","protein deubiquitination;thiol-dependent ubiquitinyl hydrolase activity;ubiquitin-dependent protein catabolic process","The removal of one or more ubiquitin groups from a protein. [GOC:ai];Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. [EC:3.4.19.12, GOC:bf, GOC:ka];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]"]
["OS12T0409800-01",0.21107554251770203,0.45787986190008806,-0.272276425680392,"OS12G0409800",null,560.337921201005,417.966776224925,397.429240141518,412.618785058814,"no","OS12G0409800","Os12g0409800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9I5]","Conserved hypothetical protein. (Os12t0409800-01)",12,12439519,12442244]
["OS08T0430600-02",0.211862620373856,0.45877289514934105,1.7058147307702098,"OS08G0430600",null,47.8108308029065,0,65.6973517408943,90.2678428651234,"no","OS08G0430600","Protein CURVATURE THYLAKOID 1A, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G01150) UniProtKB/Swiss-Prot;Acc:O04616]","Similar to Threonine endopeptidase. (Os08t0430600-01);Similar to Threonine endopeptidase. (Os08t0430600-02)",8,20817234,20820444,"GO:0009579;GO:0016020;GO:0016021;GO:0009507;GO:0009534;GO:0009535;GO:0009941;GO:0010287","thylakoid;membrane;integral component of membrane;chloroplast;chloroplast thylakoid;chloroplast thylakoid membrane;chloroplast envelope;plastoglobule","A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379]"]
["OS02T0605500-01",0.21240321223410602,0.45919903463662404,-0.15519591948321,"OS02G0605500",null,226.274370112606,254.244575062383,225.387870418549,206.123146404287,"no","OS02G0605500","Os02g0605500 protein [Source:UniProtKB/TrEMBL;Acc:Q6K8R6]","Zinc finger, TRAF-type domain containing protein. (Os02t0605500-01)",2,23726254,23729125,"GO:0046872;GO:0008270;GO:0016740","metal ion binding;zinc ion binding;transferase activity","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0171000-01",0.212642781891826,0.45919903463662404,-0.0693471656107406,"OS08G0171000",null,402.605298173331,423.054738261697,379.54927096457,407.361858059656,"no","OS08G0171000","Os08g0171000 protein [Source:UniProtKB/TrEMBL;Acc:Q6YYL0]","Conserved hypothetical protein. (Os08t0171000-01)",8,4172264,4175556,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0503000-01",0.21294429464317602,0.459203038346552,-0.180863517217965,"OS05G0503000","SCAMP3",3683.58366480612,4436.41343529906,3436.43324508282,3726.82371342348,"no","OS05G0503000","Secretory carrier-associated membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q60EA5]","Similar to Secretory carrier membrane protein. (Os05t0503000-01)",5,24762188,24767756,"GO:0030658;GO:0031410;GO:0015031;GO:0005886;GO:0006810;GO:0016021;GO:0016020","transport vesicle membrane;cytoplasmic vesicle;protein transport;plasma membrane;transport;integral component of membrane;membrane","The lipid bilayer surrounding a transport vesicle. [GOC:mah];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0748400-01",0.21320837053034203,0.459376093403262,-0.0377458044725122,"OS03G0748400",null,1420.83996368006,1564.58200038389,1502.58580279033,1405.74032073824,"no","OS03G0748400","Os03g0748400 protein [Source:UniProtKB/TrEMBL;Acc:Q10CW0]","Serine protein kinase-like protein. (Os03t0748400-01)",3,30803349,30807412,"GO:0050684;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0000245","regulation of mRNA processing;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;spliceosomal complex assembly","Any process that modulates the frequency, rate or extent of mRNA processing, those processes involved in the conversion of a primary mRNA transcript into a mature mRNA prior to its translation into polypeptide. [GOC:ai];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. [PMID:9476892]"]
["OS11T0473350-00",0.213925813870493,0.46010992364458203,-0.00540319675966541,"OS11G0473350",null,524.915768504469,558.926333031878,533.710671510591,546.079804928892,"no","OS11G0473350","Os11g0473350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y308]","Similar to Ubiquitin carboxyl-terminal hydrolase. (Os11t0473350-00)",11,16324255,16325115,"GO:0016579;GO:0036459","protein deubiquitination;thiol-dependent ubiquitinyl hydrolase activity","The removal of one or more ubiquitin groups from a protein. [GOC:ai];Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. [EC:3.4.19.12, GOC:bf, GOC:ka]"]
["OS03T0109900-01",0.21437905604679103,0.460273273382835,0.037083868534878696,"OS03G0109900",null,1155.77464030607,1148.60751342509,1231.89039844463,1132.49277504427,"no","OS03G0109900","Os03g0109900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VS29]","Peptidase, trypsin-like serine and cysteine domain containing protein. (Os03t0109900-01);Hypothetical conserved gene. (Os03t0109900-02);Peptidase cysteine/serine, trypsin-like domain containing protein. (Os03t0109900-03)",3,574269,580537,"GO:0015074;GO:0006508;GO:0008233;GO:0003676;GO:0008270","DNA integration;proteolysis;peptidase activity;nucleic acid binding;zinc ion binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS04T0665500-01",0.21487668203128,0.460512884854534,-0.0408350775115397,"OS04G0665500",null,1737.82793262159,1841.47184124131,1829.44700015056,1649.96205818408,"no","OS04G0665500","Os04g0665500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WG50]","Similar to H1005F08.9 protein. (Os04t0665500-01)",4,33968605,33972525]
["OS09T0251800-01",0.21527705636846603,0.460850664665209,-0.22794721071524202,"OS09G0251800",null,133.522263444826,142.047576350643,111.230377609154,124.064642622485,"no","OS09G0251800","Protein C2-DOMAIN ABA-RELATED 11 [Source:Projected from Arabidopsis thaliana (AT5G47710) UniProtKB/Swiss-Prot;Acc:Q9FIK8]","C2 calcium-dependent membrane targeting domain containing protein. (Os09t0251800-01)",9,3949859,3953247,"GO:0005773;GO:0005886","vacuole;plasma membrane","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS08T0103300-01",0.21571233230181502,0.46108580602526705,0.00655881216651929,"OS08G0103300","TULP12",1123.08686526401,1130.69169647087,1084.72827255127,1179.31979326295,"no","OS08G0103300","Tubby-like F-box protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q69U54]","Similar to Tubby-like protein 3. (Os08t0103300-01);Similar to Tubby-like F-box protein 12. (Os08t0103300-02)",8,187111,191782,"GO:0035091","phosphatidylinositol binding","Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, ISBN:0198506732, PMID:11395417]"]
["OS02T0743450-00",0.21590367979659303,0.461214461274333,-0.33808809825337305,"OS02G0743450",null,493.021673813145,709.56210626475,481.722078027809,469.628712129395,"no","OS02G0743450","Os02g0743450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPK5]","Hypothetical protein. (Os02t0743450-00)",2,31158954,31161892]
["OS03T0581100-01",0.216334678522404,0.46145759255857705,0.134012255646557,"OS03G0581100",null,296.751156938741,270.437033520079,300.304421551133,322.094581693555,"no","OS03G0581100","Os03g0581100 protein [Source:UniProtKB/TrEMBL;Acc:Q10HP5]","Hypothetical conserved gene. (Os03t0581100-01)",3,21334814,21337846,"GO:0006355;GO:0003676;GO:0008270","regulation of transcription, DNA-templated;nucleic acid binding;zinc ion binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0172800-01",0.21686477757171801,0.46162974958754405,-0.324103158310592,"OS01G0172800",null,338.392301249483,272.772519803771,204.898064016863,283.297215437171,"no","OS01G0172800","Os01g0172800 protein [Source:UniProtKB/TrEMBL;Acc:Q94E65]","Embryo-specific 3 family protein. (Os01t0172800-01)",1,3735961,3736782]
["OS02T0100700-02",0.217349133402949,0.46183067153378204,-0.6004717261406161,"OS02G0100700",null,32.4876256221481,32.8227949629644,24.1663278205031,18.908393800743,"no","OS02G0100700","Os02g0100700 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU98]","FG-GAP repeat containing protein. (Os02t0100700-01);Similar to predicted protein. (Os02t0100700-02)",2,34262,40938,"GO:0016020;GO:0016021;GO:0005774;GO:0005783;GO:0005794","membrane;integral component of membrane;vacuolar membrane;endoplasmic reticulum;Golgi apparatus","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732]"]
["OS06T0639100-03",0.21763531733722802,0.46197337441981,-0.2730293715225,"OS06G0639100",null,1210.72406513093,1025.20362855767,808.795248804458,1041.61371900593,"no","OS06G0639100","Probable E3 ubiquitin ligase SUD1 [Source:Projected from Arabidopsis thaliana (AT4G34100) UniProtKB/Swiss-Prot;Acc:F4JKK0]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0639100-01);Similar to protein binding / zinc ion binding. (Os06t0639100-02);Similar to protein binding / zinc ion binding. (Os06t0639100-03);Similar to predicted protein. (Os06t0639100-04);Similar to predicted protein. (Os06t0639100-05)",6,25968017,25974644,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0016020;GO:0016021;GO:0030176;GO:1904264;GO:0030433;GO:0046872;GO:0008270;GO:0008299;GO:0009414;GO:0010025;GO:0010143;GO:0010345;GO:0042335;GO:1900490","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;membrane;integral component of membrane;integral component of endoplasmic reticulum membrane;ubiquitin protein ligase activity involved in ERAD pathway;ubiquitin-dependent ERAD pathway;metal ion binding;zinc ion binding;isoprenoid biosynthetic process;response to water deprivation;wax biosynthetic process;cutin biosynthetic process;suberin biosynthetic process;cuticle development;positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];Any ubiquitin protein ligase activity that is involved in the ERAD pathway (the targeting of endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome). [GO_REF:0000061, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:23990462];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:0943088399];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262];The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:0192800825];Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]"]
["OS06T0179400-01",0.217754827935833,0.462111792889391,-1.52892310686781,"OS06G0179400",null,18.3465705266415,10.5520112890213,0,10.0143972338753,"no","OS06G0179400","Os06g0179400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WTN3]","Hypothetical protein. (Os06t0179400-01)",6,3941560,3943507]
["OS11T0311100-01",0.21812110099134102,0.46246355506539905,0.105023588010329,"OS11G0311100",null,1342.35462402735,1330.73158644847,1338.67824772313,1536.25798156888,"no","OS11G0311100","Os11g0311100 protein [Source:UniProtKB/TrEMBL;Acc:Q0IT45]","Similar to Pantothenate kinase family protein. (Os11t0311100-01)",11,11956178,11958426]
["OS12T0141600-00",0.218926322102852,0.46307919717934604,0.184802075634657,"OS12G0141600",null,171.676327324202,152.897286235171,178.657545925815,190.272629766113,"no","OS12G0141600","Os12g0141600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6T4]","Hypothetical conserved gene. (Os12t0141600-00)",12,2016873,2022027]
["OS05T0337200-01",0.219513238879389,0.46342485827740904,-0.295905814251923,"OS05G0337200",null,540.204577295862,500.254508017482,347.35100376192,500.166118289075,"no","OS05G0337200","Os05g0337200 protein [Source:UniProtKB/TrEMBL;Acc:Q5WMQ1]","Helix-loop-helix DNA-binding domain containing protein. (Os05t0337200-01)",5,15753065,15754783,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS05T0312000-01",0.219900208284865,0.463657085129,0.0821757408735624,"OS05G0312000",null,629.898922205363,583.630259353729,680.066431522636,604.591750077892,"no","OS05G0312000","Os05g0312000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKI3]","Hypothetical conserved gene. (Os05t0312000-01)",5,14294833,14308824]
["OS09T0536000-01",0.22041300796540503,0.46393787250148405,0.123220076908452,"OS09G0536000",null,271.468239681128,314.018215912825,328.03547692051,309.654795223488,"no","OS09G0536000","DNA-(apurinic or apyrimidinic site) lyase 2 [Source:Projected from Arabidopsis thaliana (AT4G36050) UniProtKB/Swiss-Prot;Acc:F4JNY0]","Exodeoxyribonuclease III xth family protein. (Os09t0536000-01)",9,21064014,21068725,"GO:0008311;GO:0003906;GO:0006284;GO:0005634;GO:0004518;GO:0004519;GO:0006281;GO:0090305;GO:0005622;GO:0003677;GO:0008270","double-stranded DNA 3'-5' exodeoxyribonuclease activity;DNA-(apurinic or apyrimidinic site) lyase activity;base-excision repair;nucleus;nuclease activity;endonuclease activity;DNA repair;nucleic acid phosphodiester bond hydrolysis;intracellular;DNA binding;zinc ion binding","Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a double-stranded DNA molecule. [GOC:mah, PMID:22562358];Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate. [EC:4.2.99.18];In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. [ISBN:0815316194];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS09T0340400-01",0.22052907418619103,0.46398614878222405,0.005942788998988001,"OS09G0340400",null,775.076229584569,761.90572131888,795.205164558316,748.121022275618,"no","OS09G0340400","Os09g0340400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XME9]","Conserved hypothetical protein. (Os09t0340400-01);Hypothetical conserved gene. (Os09t0340400-02)",9,10448414,10452767]
["OS02T0644700-01",0.221234738006878,0.464816619735025,0.28241319676494,"OS02G0644700",null,615.254167624395,468.32955986228,724.74491863032,593.139483395728,"no","OS02G0644700","Acyl-[acyl-carrier-protein] hydrolase [Source:UniProtKB/TrEMBL;Acc:Q6H643]","Similar to Acyl-ACP thioesterase (Fragment). (Os02t0644700-01)",2,25946487,25954551,"GO:0016790;GO:0006631;GO:0006629;GO:0006633;GO:0009536;GO:0009507;GO:0016787","thiolester hydrolase activity;fatty acid metabolic process;lipid metabolic process;fatty acid biosynthetic process;plastid;chloroplast;hydrolase activity","Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A. [http://www.onelook.com];The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198547684];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0226200-00",0.22192738251995903,0.46510629593817304,0.8247055034452461,"OS01G0226200",null,12.2310470331138,9.2639723706941,22.4412165351802,15.6301911965336,"no","OS01G0226200","Os01g0226200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0Q5]","Conserved hypothetical protein. (Os01t0226200-00)",1,6957350,6958652]
["OS07T0511500-02",0.22212816021643503,0.46510629593817304,0.34012582490132603,"OS07G0511500",null,65.8472273831372,69.7018261605512,84.1963972601226,87.3906754133369,"no","OS07G0511500","Os07g0511500 protein [Source:UniProtKB/TrEMBL;Acc:Q0D646]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0511500-01);Similar to chromatin remodeling complex subunit. (Os07t0511500-02)",7,19538543,19545805,"GO:0005524","ATP binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS02T0467300-01",0.22253633526547803,0.465215240090519,0.490522713984169,"OS02G0467300",null,30.5776175827846,27.7919171120823,42.9310229368665,39.075477991334,"no","OS02G0467300","Os02g0467300 protein [Source:UniProtKB/TrEMBL;Acc:Q6K7B3]","Conserved hypothetical protein. (Os02t0467300-01)",2,15726766,15727534,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0664200-02",0.22259597832889602,0.46521613727215105,-0.22568068388466903,"OS01G0664200",null,1125.57280869153,1326.46699423278,936.941658550785,1160.02178921492,"no","OS01G0664200","Os01g0664200 protein [Source:UniProtKB/TrEMBL;Acc:Q94E23]","Similar to Ser Thr specific protein kinase-like protein. (Os01t0664200-01);Similar to Ser Thr specific protein kinase-like protein. (Os01t0664200-02)",1,27130541,27134194,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0518600-01",0.222907905473743,0.465250372318384,-0.574724312523283,"OS04G0518600",null,25.4813479856539,37.0558894827764,14.6355760012045,27.3528345939338,"no","OS04G0518600","Os04g0518600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBP6]","Similar to OSIGBa0102I15.5 protein. (Os04t0518600-01)",4,25943381,25944083,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0499500-03",0.2235348407348,0.46567045238793103,0.20339413914533902,"OS06G0499500","GH3.7",437.25993143382,349.58216953876,477.119777639267,428.85337095489,"no","OS06G0499500","Probable indole-3-acetic acid-amido synthetase GH3.7 [Source:UniProtKB/Swiss-Prot;Acc:Q654M1]","Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17). (Os06t0499500-01);Similar to GH3.17; indole-3-acetic acid amido synthetase. (Os06t0499500-02);Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17). (Os06t0499500-03)",6,17586900,17590657,"GO:0009416;GO:0009733;GO:0016874;","response to light stimulus;response to auxin;ligase activity;","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];"]
["OS09T0543100-03",0.22391514258854803,0.465870055271042,0.0411606242853489,"OS09G0543100",null,1143.04614154883,1271.83020759523,1204.13226352771,1280.63364990243,"no","OS09G0543100","Phospholipase D delta [Source:Projected from Arabidopsis thaliana (AT4G35790) UniProtKB/Swiss-Prot;Acc:Q9C5Y0]","Similar to predicted protein. (Os09t0543100-01);Similar to Phospholipase D nu-2 (Fragment). (Os09t0543100-02);Similar to predicted protein. (Os09t0543100-03)",9,21391774,21397922,"GO:0070290;GO:0004630;GO:0016042;GO:0046470;GO:0005509;GO:0016787;GO:0003824;GO:0016020","N-acylphosphatidylethanolamine-specific phospholipase D activity;phospholipase D activity;lipid catabolic process;phosphatidylcholine metabolic process;calcium ion binding;hydrolase activity;catalytic activity;membrane","Catalysis of the release of N-acylethanolamine from N-acyl-phosphatidylethanolamine (NAPE) to generate N-acylethanolamine (NAE). [GOC:elh, PMID:14634025, PMID:15878693];Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. [EC:3.1.4.4];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0205100-01",0.22438281770662302,0.46612253428543904,0.0565654122951295,"OS08G0205100",null,427.400198334594,446.723155027725,475.136964458142,433.939907594442,"no","OS08G0205100","Os08g0205100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPF7]","Disease resistance protein domain containing protein. (Os08t0205100-01)",8,6127418,6131390,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS07T0657500-01",0.22516995011092203,0.46693764445726404,-0.776261852434279,"OS07G0657500",null,37.3533589970667,80.8342163452886,30.6491928813204,38.3578982619439,"no","OS07G0657500","Os07g0657500 protein [Source:UniProtKB/TrEMBL;Acc:Q7XAN2]","Zinc finger, C2H2-like domain containing protein. (Os07t0657500-01);Similar to XIAP associated factor-1. (Os07t0657500-02)",7,27684419,27686520,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0451800-01",0.22558857672399,0.46702525293898,0.0950386044434877,"OS09G0451800",null,246.659448501129,254.244575062383,265.391778155175,269.620798140204,"no","OS09G0451800","Os09g0451800 protein [Source:UniProtKB/TrEMBL;Acc:Q67UF1]","Protein of unknown function DUF1644 family protein. (Os09t0451800-01)",9,16945131,16947984]
["OS03T0618800-01",0.22565181437217202,0.467036714423317,-0.128134941356833,"OS03G0618800",null,215.28246672972,207.823834907585,191.921979184343,195.226032192408,"no","OS03G0618800","Os03g0618800 protein [Source:UniProtKB/TrEMBL;Acc:B9F9Q5]","Conserved hypothetical protein. (Os03t0618800-01)",3,23465079,23466595]
["OS09T0356300-01",0.226212298815849,0.46748887542293704,0.19100984634439103,"OS09G0356300",null,182.232233774598,158.439225804496,179.180703382131,209.717059089024,"no","OS09G0356300","Os09g0356300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKL4]","Hypothetical conserved gene. (Os09t0356300-01)",9,11448447,11459828]
["OS03T0638800-01",0.226708332278786,0.46773430318680304,-0.10699012542506,"OS03G0638800",null,2702.04214039873,2918.15129676864,2460.72817833585,2757.75185923839,"no","OS03G0638800","Os03g0638800 protein [Source:UniProtKB/TrEMBL;Acc:Q75J49]","Similar to ATP binding protein. (Os03t0638800-01)",3,24476060,24480927,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS12T0568800-03",0.22711817425041902,0.46791197809814705,-1.12742045304277,"OS12G0568800",null,10.3370779172612,19.7909925987888,5.90527332624534,7.88535154484999,"no","OS12G0568800","Importin subunit beta-1 [Source:Projected from Arabidopsis thaliana (AT5G53480) UniProtKB/Swiss-Prot;Acc:Q9FJD4]","Similar to predicted protein. (Os12t0568800-01);Similar to predicted protein. (Os12t0568800-02);Non-protein coding transcript. (Os12t0568800-03)",12,23404675,23408779,"GO:0031965;GO:0006607;GO:0008565;GO:0008139;GO:0005737;GO:0015031;GO:0006913;GO:0008536;GO:0006886;GO:0005622;GO:0005634;GO:0000060;GO:0006610;GO:0034399;GO:0006606;GO:0009507;","nuclear membrane;NLS-bearing protein import into nucleus;protein transporter activity;nuclear localization sequence binding;cytoplasm;protein transport;nucleocytoplasmic transport;Ran GTPase binding;intracellular protein transport;intracellular;nucleus;protein import into nucleus, translocation;ribosomal protein import into nucleus;nuclear periphery;protein import into nucleus;chloroplast;","Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. [GOC:mah, GOC:pz];The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane. [GOC:ai];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of molecules between the nucleus and the cytoplasm. [GOC:go_curators];Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope. [GOC:curators, ISBN:0198506732, PMID:14570049, PMID:9126736];The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane. [GOC:ai];The portion of the nuclear lumen proximal to the inner nuclear membrane. [GOC:krc, GOC:mah];The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];"]
["OS02T0523800-01",0.22767843571187102,0.468362516101312,-0.18428801213091903,"OS02G0523800","IPK2",244.620940662277,206.895382945502,182.456847481683,214.915128952337,"no","OS02G0523800","Inositol polyphosphate multikinase IPK2 [Source:UniProtKB/Swiss-Prot;Acc:Q6H545]","Inositol polyphosphate kinase family protein. (Os02t0523800-01)",2,19121903,19125625,"GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740;GO:0000823;GO:0008440;GO:0047326;GO:0102732","phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity;inositol-1,4,5-trisphosphate 6-kinase activity;inositol-1,4,5-trisphosphate 3-kinase activity;inositol tetrakisphosphate 5-kinase activity;","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: D-myo-inositol 1,4,5-trisphosphate + ATP = D-myo-inositol 1,4,5,6-tetrakisphosphate + ADP + 2 H(+). [MetaCyc:2.7.1.151-RXN];Catalysis of the reaction: 1D-myo-inositol 1,4,5-trisphosphate + ATP = 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ADP + 2 H(+). [EC:2.7.1.127, RHEA:11023];Catalysis of the reaction: 1D-myo-inositol 1,3,4,6-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP. [EC:2.7.1.140, MetaCyc:2.7.1.140-RXN];"]
["OS01T0237100-01",0.22797639422706803,0.46874855618987704,0.7433403063785751,"OS01G0237100",null,22.4235862273754,19.5572750047987,47.8095482706014,22.468399845017,"no","OS01G0237100","Os01g0237100 protein [Source:UniProtKB/TrEMBL;Acc:Q5NAM1]","Phosphoglycerate mutase domain containing protein. (Os01t0237100-01)",1,7590433,7592743]
["OS12T0617900-02",0.228486892402009,0.469103658132262,-0.030310072747639798,"OS12G0617900","BSL2",729.010391577384,748.121398375399,688.71560214187,757.706347981444,"no","OS12G0617900","Serine/threonine-protein phosphatase BSL2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q2QM47]","Similar to Serine/threonine protein phosphatase. (Os12t0617900-01);Similar to Serine/threonine protein phosphatase BSL2 (EC 3.1.3.16) (BSU1-like protein 2). (Os12t0617900-02);Similar to Serine/threonine protein phosphatase. (Os12t0617900-03)",12,26306869,26315803,"GO:0004721;GO:0009742;GO:0006470;GO:0016787;GO:0046872;GO:0005634","phosphoprotein phosphatase activity;brassinosteroid mediated signaling pathway;protein dephosphorylation;hydrolase activity;metal ion binding;nucleus","Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS10T0495400-01",0.229031711659082,0.46955957956034605,0.182258133664772,"OS10G0495400",null,169.58549563171,147.494890656067,185.889585322529,173.88836544245,"no","OS10G0495400","Os10g0495400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVR9]","Hypothetical conserved gene. (Os10t0495400-01)",10,18845293,18847382]
["OS02T0461400-01",0.22978261479497503,0.46977899091672304,-0.61345391153059,"OS02G0461400",null,31.5968715022108,23.6745960584405,14.6355760012045,21.4915128952337,"no","OS02G0461400","Os02g0461400 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6F5]","Conserved hypothetical protein. (Os02t0461400-01)",2,15453514,15453948]
["OS10T0412100-01",0.229804132778187,0.46977899091672304,0.36043377775766905,"OS10G0412100",null,123.852654328638,87.3076957724288,146.304063021917,124.786095757773,"no","OS10G0412100","Endonuclease/exonuclease/phosphatase family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q338D5]","Carbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation (Os10t0412100-01);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-02);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-03)",10,14357056,14362380,"GO:0004527;GO:0004519;GO:0090305","exonuclease activity;endonuclease activity;nucleic acid phosphodiester bond hydrolysis","Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS05T0381500-02",0.23044645750172402,0.47021530765412806,-0.269829020199844,"OS05G0381500",null,127.160319514284,125.123976407166,114.509723624005,94.7393715983236,"no","OS05G0381500","Os05g0381500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKP2]","Similar to predicted protein. (Os05t0381500-01);Similar to predicted protein. (Os05t0381500-02)",5,18433303,18437513,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0508400-01",0.230506570302517,0.470243265013473,0.142236656855585,"OS05G0508400",null,212.00481524064,222.335336896659,253.683317354211,225.660885399954,"no","OS05G0508400","Os05g0508400 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4X6]","Mannose-binding lectin domain containing protein. (Os05t0508400-01)",5,25159955,25163398,"GO:0030246;GO:0006508;GO:0008234","carbohydrate binding;proteolysis;cysteine-type peptidase activity","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE]"]
["OS06T0698748-01",0.231052467033515,0.470513793959889,1.1202785167776,"OS06G0698748",null,94.4976022769132,58.4243237006378,148.900130994768,183.535216900469,"no","OS06G0698748","Os06g0698748 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z4U8]","Similar to cDNA clone:J023083M02, full insert sequence. (Os06t0698748-01);Similar to MTD1. (Os06t0698748-02)",6,29342111,29343842]
["OS08T0224100-03",0.23119371627324,0.47052340224885403,0.0653177922001151,"OS08G0224100",null,863.353856551515,789.980820756701,906.372836794493,823.536686486125,"no","OS08G0224100","Os08g0224100 protein [Source:UniProtKB/TrEMBL;Acc:Q8GV30]","Similar to Serine/thronine protein kinase-like protein. (Os08t0224100-01);Similar to Serine/thronine protein kinase-like protein. (Os08t0224100-02);Similar to Serine/threonine protein kinase. (Os08t0224100-03)",8,7553773,7558719,"GO:0006468;GO:0005524;GO:0004672;GO:0004871;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0004674","protein phosphorylation;ATP binding;protein kinase activity;signal transducer activity;intracellular;intracellular signal transduction;phosphorylation;kinase activity;protein serine/threonine kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf]"]
["OS05T0482600-01",0.23167831790098603,0.470749343009763,-0.14833069648379602,"OS05G0482600",null,772.991203025674,817.211782767843,742.952749064964,691.877670984096,"no","OS05G0482600","Os05g0482600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DH92]","WD40 repeat-like domain containing protein. (Os05t0482600-01)",5,23743472,23747589]
["OS10T0135400-01",0.23229139112544,0.470950690507119,0.20330484661469503,"OS10G0135400",null,152.888087913923,157.4875303018,160.99133601325,196.354276906453,"no","OS10G0135400","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q33B72]","Cyclin-like F-box domain containing protein. (Os10t0135400-01)",10,2192056,2194420]
["OS03T0307900-01",0.23290358034785902,0.47136400967489206,0.46152965962005,"OS03G0307900",null,33.6353793410631,30.8799079023137,48.7852533373483,40.0523649411173,"no","OS03G0307900","Os03g0307900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWI1]","Conserved hypothetical protein. (Os03t0307900-01)",3,10959759,10962360]
["OS06T0575400-01",0.232920347409723,0.47136400967489206,-0.22755277067913,"OS06G0575400",null,1553.07730422768,1769.24981506259,1596.05627356551,1241.48496326445,"no","OS06G0575400","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:Q5Z601]","Serine/threonine protein kinase-related domain containing protein. (Os06t0575400-01)",6,22352087,22354757,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0477600-01",0.23355027557457,0.47194222507624406,-0.0261976691624103,"OS12G0477600",null,848.01926096256,875.960054162298,797.151039532272,895.805332951331,"no","OS12G0477600","Os12g0477600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YA85]","Conserved hypothetical protein. (Os12t0477600-01)",12,17406834,17413826]
["OS01T0183000-01",0.23428252301075603,0.47255167828735806,-0.259877651581077,"OS01G0183000",null,517.780991068486,610.3928462024,405.893307766738,536.310935431059,"no","OS01G0183000","Os01g0183000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JQ41]","Similar to GmCK3p (EC 2.7.1.32) (Fragment). (Os01t0183000-01)",1,4395060,4397438,"GO:0016310;GO:0016301","phosphorylation;kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS02T0468200-01",0.234607322634232,0.47255557233129303,0.20939139470824303,"OS02G0468200",null,366.931410993416,335.561665871809,451.751445903846,360.471284470056,"no","OS02G0468200","Os02g0468200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K7A6]","Protein of unknown function DUF652 family protein. (Os02t0468200-01)",2,15762105,15765780,"GO:0070181;GO:0032040;GO:0005730;GO:0000462;GO:0009793","small ribosomal subunit rRNA binding;small-subunit processome;nucleolus;maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);embryo development ending in seed dormancy","Interacting selectively and non-covalently with the small ribosomal subunit RNA (SSU rRNA), a constituent of the small ribosomal subunit. In S. cerevisiae, this is the 18S rRNA. [GOC:elh];A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12068309, PMID:12957375, PMID:15120992, PMID:15590835];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. [GOC:curators];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]"]
["OS03T0775300-01",0.235145591602053,0.47282928225786,-0.0228679701515132,"OS03G0775300",null,549.377862570697,575.395617246445,581.520219781192,525.565178983442,"no","OS03G0775300",null,"Flavodoxin/nitric oxide synthase domain containing protein. (Os03t0775300-01)",3,32147180,32150669,"GO:0051539;GO:0008033;GO:0051536;GO:0010181;GO:0046872;GO:0055114;GO:0000166;GO:0016829;GO:0003824","4 iron, 4 sulfur cluster binding;tRNA processing;iron-sulfur cluster binding;FMN binding;metal ion binding;oxidation-reduction process;nucleotide binding;lyase activity;catalytic activity","Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0870100-01",0.235356111227521,0.472972433744868,-0.138883686027783,"OS01G0870100",null,287.325121856842,258.74458317869,251.482154510942,244.470167487135,"no","OS01G0870100","Probable ion channel POLLUX [Source:UniProtKB/Swiss-Prot;Acc:Q5N941]","Ion channel DMI1.,Cation channel protein. (Os01t0870100-01);Similar to DMI1 protein homologue. (Os01t0870100-02);Similar to Ion channel POLLUX. (Os01t0870100-03)",1,37714857,37720652,"GO:0016020;GO:0016021;GO:0006810;GO:0006811;GO:0005634;GO:0031965","membrane;integral component of membrane;transport;ion transport;nucleus;nuclear membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. [GOC:mah, GOC:pz]"]
["OS01T0680200-01",0.23565946404412103,0.47310874908149,-1.1014787503481102E-3,"OS01G0680200",null,389.530740756321,371.588225091175,391.274816253377,369.263267018106,"no","OS01G0680200","Os01g0680200 protein [Source:UniProtKB/TrEMBL;Acc:Q5QLF2]","Protein of unknown function DUF250 domain containing protein. (Os01t0680200-01)",1,27995961,27997544,"GO:0006810;GO:0005215;GO:0016021;GO:0016020","transport;transporter activity;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0727300-04",0.23620771470357402,0.47350030179276903,-1.02236864397279,"OS02G0727300",null,46.0190827254541,32.640844304293,5.3737527930127005,33.3511120558536,"no","OS02G0727300","Os02g0727300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPF1]","Similar to Beta-catenin repeat family protein. (Os02t0727300-01);Similar to Beta-catenin repeat family protein. (Os02t0727300-02);Similar to ubiquitin-protein ligase. (Os02t0727300-03);Similar to ubiquitin-protein ligase. (Os02t0727300-04)",2,30266710,30271899,"GO:0016567;GO:0004842;GO:0016310;GO:0016301;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;phosphorylation;kinase activity;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0102400-01",0.23672834114163901,0.47396950366169305,-0.08139704827688701,"OS10G0102400",null,493.318897002259,451.87598563719,419.553178701196,473.790170644924,"no","OS10G0102400","Os10g0102400 protein [Source:UniProtKB/TrEMBL;Acc:Q0IZD2]","Similar to CF9. (Os10t0102400-01)",10,186845,188331,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0337500-02",0.23732129760667503,0.47429080912356303,-0.114015382296707,"OS04G0337500",null,338.773820145962,398.790228934532,337.914991682363,343.603571770328,"no","OS04G0337500","Probable aldo-keto reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0JE32]","Aldo/keto reductase family protein. (Os04t0337500-01);Similar to OSIGBa0115A19.1 protein. (Os04t0337500-02)",4,15888816,15893913,"GO:0055114;GO:0016491","oxidation-reduction process;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS12T0484700-01",0.23764020049995901,0.47451260198931206,0.0103048780197602,"OS12G0484700",null,446.769559994148,446.123060451798,427.796992919946,471.496210205444,"no","OS12G0484700","Protein yippee-like [Source:UniProtKB/TrEMBL;Acc:Q0INB8]","Similar to Yippee-like protein CG15309. (Os12t0484700-01)",12,17907213,17909016,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS04T0550200-01",0.238315702364113,0.47486883158119203,-0.32736595677443,"OS04G0550200",null,66.2515047627,69.994457911911,58.542304004818,50.0444045931249,"no","OS04G0550200","OSJNBb0034G17.6 protein [Source:UniProtKB/TrEMBL;Acc:Q7XU26]","Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os04t0550200-01)",4,27539878,27540865,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0353700-00",0.23842916589602903,0.47486883158119203,4.8498361941392305E-3,"OS09G0353700",null,765.023912228413,800.310311024889,743.508150288905,827.097033800483,"no","OS09G0353700","Os09g0353700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQM8]","Similar to Leucoanthocyanidin dioxygenase. (Os09t0353700-00)",9,11308997,11310729,"GO:0051213;GO:0055114;GO:0046872;GO:0016491","dioxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity","Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS01T0539400-02",0.23907923172084802,0.47554316691757903,0.0359385077420457,"OS01G0539400",null,618.141420368576,583.467178093793,633.088685775033,598.828733630262,"no","OS01G0539400","Os01g0539400 protein [Source:UniProtKB/TrEMBL;Acc:Q5JL84]","Hypothetical protein. (Os01t0539400-01);Hypothetical protein. (Os01t0539400-02)",1,19824231,19826621]
["OS06T0698802-01",0.23966150141240503,0.47595802074569604,0.171296046487138,"OS06G0698802",null,247.448024245337,211.044785976587,238.983290501729,277.311541498098,"no","OS06G0698802","Os06g0698802 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0I2]","Hypothetical conserved gene. (Os06t0698802-01)",6,29350173,29353929]
["OS10T0529300-01",0.24036719890652403,0.47659474248062506,0.194886568255753,"OS10G0529300",null,835.893712193178,853.331141073702,858.368543376472,1075.17592813671,"no","OS10G0529300","Glutathione S-transferase GSTU6, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q945W2]","Similar to Tau class GST protein 3. (Os10t0529300-01)",10,20589767,20590845,"GO:0005737;GO:0004364;GO:0016740;GO:0006749;GO:0009407","cytoplasm;glutathione transferase activity;transferase activity;glutathione metabolic process;toxin catabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. [GOC:go_curators]"]
["OS01T0550800-01",0.241111230774216,0.47737867426698405,-0.25820349375412,"OS01G0550800",null,7154.19934716148,5768.72844575459,4779.46623858045,6025.76140762047,"no","OS01G0550800","Os01g0550800 protein [Source:UniProtKB/TrEMBL;Acc:Q5JK80]","Protein of unknown function DUF239, plant domain containing protein. (Os01t0550800-01)",1,20640981,20643879]
["OS07T0623000-01",0.24121650882616402,0.47746334808273205,-0.0793956285827337,"OS07G0623000",null,367.950664912842,331.444344818167,317.104146692764,344.841093273522,"no","OS07G0623000","Os07g0623000 protein [Source:UniProtKB/TrEMBL;Acc:Q8LHL4]","Protein of unknown function DUF343 family protein. (Os07t0623000-01)",7,25774523,25775231,"GO:0030488;GO:0070476;GO:0018364","tRNA methylation;rRNA (guanine-N7)-methylation;peptidyl-glutamine methylation","The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah];The addition of a methyl group to the N7 atom in the base portion of a guanine nucleotide residue in an rRNA molecule. [GOC:mah];The addition of a methyl group to a glutamine residue in a protein. [GOC:mah]"]
["OS02T0595800-01",0.24172185273700902,0.47771096292653203,-0.0543562852989719,"OS02G0595800",null,1079.38976795815,1222.98929209653,1080.6195658635,1136.62681359347,"no","OS02G0595800","Os02g0595800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZI51]","Similar to Eukaryotic initiation factor 4B (Fragment). (Os02t0595800-01)",2,23116208,23120443,"GO:0003743;GO:0006413","translation initiation factor activity;translational initiation","Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X]"]
["OS09T0539000-00",0.242045416425496,0.47798859415895506,-0.0963073863738222,"OS09G0539000",null,331.2575238135,330.415014554756,331.739722693969,287.204763236305,"no","OS09G0539000","Os09g0539000 protein [Source:UniProtKB/TrEMBL;Acc:Q651F1]","Hypothetical conserved gene. (Os09t0539000-00)",9,21224394,21225635]
["OS09T0382300-00",0.24278064222803403,0.478358704918564,-0.439343524836772,"OS09G0382300","CYCD2-1",67.2707586821262,100.874365814225,51.7123685375892,72.2896342839678,"no","OS09G0382300","Cyclin-D2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q0J233]","Cyclin-D2-1. (Os09t0382300-00)",9,12969034,12971764,"GO:0051301;GO:0007049;GO:0005634","cell division;cell cycle;nucleus","The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS05T0560600-02",0.24323879546423302,0.47837593513213805,0.0679592262949079,"OS05G0560600",null,609.863413282534,635.325557151613,616.00258190486,689.24540105575,"no","OS05G0560600","Os05g0560600 protein [Source:UniProtKB/TrEMBL;Acc:Q688Y5]","Homeodomain-like containing protein. (Os05t0560600-01);Homeodomain-like containing protein. (Os05t0560600-02)",5,27899055,27902494]
["OS03T0121200-01",0.24379179346045,0.47896128054811,-0.263649253839363,"OS03G0121200",null,718.921538971353,871.145559274817,573.629939736513,750.861383242194,"no","OS03G0121200","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q10SI9]","Similar to Peroxidase 1. (Os03t0121200-01);Similar to Class III peroxidase 33. (Os03t0121200-02);Similar to Class III peroxidase 33. (Os03t0121200-03)",3,1172250,1176178,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576;GO:0009506;GO:0009505;GO:0009664","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region;plasmodesma;plant-type cell wall;plant-type cell wall organization","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]"]
["OS03T0788300-02",0.24398721211759303,0.47912953494129706,0.0712714493087375,"OS03G0788300",null,886.589729557888,782.747517856817,912.414047681583,841.462124319462,"no","OS03G0788300","Os03g0788300 protein [Source:UniProtKB/TrEMBL;Acc:Q6F3A8]","Conserved hypothetical protein. (Os03t0788300-01);Hypothetical conserved gene. (Os03t0788300-02)",3,32744711,32751054,"GO:0032366;GO:0005622","intracellular sterol transport;intracellular","The directed movement of sterols within cells. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS08T0184800-02",0.24449603225687203,0.479586792558483,-0.17918983615171402,"OS08G0184800",null,147.791818316792,145.135567140874,133.671594144334,125.041529572269,"no","OS08G0184800","Os08g0184800 protein [Source:UniProtKB/TrEMBL;Acc:B7ECP6]","Conserved hypothetical protein. (Os08t0184800-02);Conserved hypothetical protein. (Os08t0184800-03)",8,4971046,4973826]
["OS03T0850600-01",0.245450385206079,0.480612713504848,-0.376785237080117,"OS03G0850600",null,116.194946814582,129.695613189717,118.060313076383,71.3127473341845,"no","OS03G0850600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q851Z3]","Similar to Integral membrane protein. (Os03t0850600-01)",3,35806060,35808891,"GO:0016020;GO:0016021;GO:0009507","membrane;integral component of membrane;chloroplast","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS03T0264400-03",0.245937464614492,0.48094997240619203,0.9295104061535081,"OS03G0264400","OSASA2",13.8369967341918,10.1295779984543,20.9055642540422,24.7418817193147,"no","OS03G0264400","Anthranilate synthase alpha subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ29]","Anthranilate synthase alpha 2 subunit. (Os03t0264400-01);Similar to Anthranilate synthase component I family protein, expressed. (Os03t0264400-02);Similar to Anthranilate synthase component I family protein, expressed. (Os03t0264400-03)",3,8702305,8707258,"GO:0009058;GO:0000162;GO:0004049;GO:0009507;GO:0009073;GO:0008652;GO:0009536;GO:0016829;GO:0005950","biosynthetic process;tryptophan biosynthetic process;anthranilate synthase activity;chloroplast;aromatic amino acid family biosynthetic process;cellular amino acid biosynthetic process;plastid;lyase activity;anthranilate synthase complex","The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:0471331309, MetaCyc:TRPSYN-PWY];Catalysis of the reaction: chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate. [EC:4.1.3.27];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];A heterotetrameric enzyme complex made up of two components I and two components II. Catalyzes the formation of anthranilate, pyruvate and L-glutamate from chorismate and L-glutamine. [EC:4.1.3.27, MetaCyc:ANTHRANSYN-CPLX, PMID:4886290]"]
["OS10T0422401-01",0.246598685615766,0.48144182011201203,-0.00901408890836161,"OS10G0422401",null,346.546332604892,349.972289559555,357.10805442939,335.072223775689,"no","OS10G0422401","Os10g0422401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRT4]","Similar to T6D22.22. (Os10t0422401-01)",10,14928862,14929838]
["OS10T0118800-00",0.24678213369437801,0.48167685099537705,-0.710131922529991,"OS10G0118800",null,21.4043323079492,18.5279447413882,10.7327557342166,13.6764172969669,"no","OS10G0118800","Os10g0118800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XR06]","Hypothetical conserved gene. (Os10t0118800-00)",10,1189829,1190703,"GO:0016491;GO:0055114;GO:0016020;GO:0016021","oxidoreductase activity;oxidation-reduction process;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0691100-01",0.24695447295597703,0.48171232724276103,-1.80532925200792,"OS07G0691100",null,5.09626959713077,5.14665131705228,0,2.93066084935005,"no","OS07G0691100","Pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q7F0H7]","Similar to Pectin methylesterase 6 (Fragment). (Os07t0691100-01)",7,29388044,29390321,"GO:0071944;GO:0046910;GO:0030599;GO:0045490;GO:0042545;GO:0045330;GO:0005618;GO:0043086;GO:0004857;GO:0016787;GO:0005576;GO:0071555","cell periphery;pectinesterase inhibitor activity;pectinesterase activity;pectin catabolic process;cell wall modification;aspartyl esterase activity;cell wall;negative regulation of catalytic activity;enzyme inhibitor activity;hydrolase activity;extracellular region;cell wall organization","The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah];Stops, prevents or reduces the activity of any pectinesterase enzyme. [GOC:ai, PMID:10880981];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl];Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. [GOC:mah, UniProtKB-KW:KW-0063];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS05T0417300-02",0.247595756698395,0.481847244103397,0.15181530306509702,"OS05G0417300",null,262.799112738303,257.305713758786,277.914740577075,299.904293583488,"no","OS05G0417300","Os05g0417300 protein [Source:UniProtKB/TrEMBL;Acc:Q6AT70]","Conserved hypothetical protein. (Os05t0417300-01);Conserved hypothetical protein. (Os05t0417300-02)",5,20442734,20446076]
["OS02T0592833-00",0.24837813809165402,0.48258578693520204,0.342765416778466,"OS02G0592833",null,118.518315647028,80.720929872773,140.450751167106,112.22150623243,"no","OS02G0592833","Os02g0592800 protein [Source:UniProtKB/TrEMBL;Acc:Q69L67]","Protein of unknown function DUF581 family protein. (Os02t0592833-00)",2,22942644,22943817]
["OS09T0310800-01",0.24902205346597603,0.48305535095190505,0.0719830744575888,"OS09G0310800",null,481.087849969145,446.729334320138,516.147980309146,459.136866398174,"no","OS09G0310800","Os09g0310800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J2R5]","Similar to Glycosyl hydrolase family 9 protein, expressed. (Os09t0310800-01)",9,8282691,8286160]
["OS03T0599400-01",0.249783978515131,0.48345288278157705,1.25980512776863,"OS03G0599400",null,8.15403135540923,0,9.75705066746967,9.76886949783349,"no","OS03G0599400","Os03g0599400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DQG0]","NB-ARC domain containing protein. (Os03t0599400-01)",3,22369319,22371235,"GO:0005886;GO:0007165;GO:0006952","plasma membrane;signal transduction;defense response","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS04T0112100-01",0.249994232793797,0.483561997710851,0.336924496288456,"OS04G0112100",null,64.2129969238477,42.2025407998287,64.0734718770398,70.3358603844011,"no","OS04G0112100","OSJNBb0060M15.7 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQC4]","NB-ARC domain containing protein. (Os04t0112100-01)",4,692896,695278,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS06T0225100-01",0.24997927217798602,0.483561997710851,0.318790409861678,"OS06G0225100",null,46.8856802936031,68.9651276485006,66.3479445387937,78.1509559826679,"no","OS06G0225100","Mitochondrial transcription termination factor-like [Source:UniProtKB/TrEMBL;Acc:Q67UH1]","Mitochodrial transcription termination factor-related family protein. (Os06t0225100-01)",6,6479283,6480980,"GO:0042255;GO:0009507;GO:0032502;GO:0009658;GO:0019843;GO:0008380;GO:0003727;GO:0003690;GO:0006355;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","ribosome assembly;chloroplast;developmental process;chloroplast organization;rRNA binding;RNA splicing;single-stranded RNA binding;double-stranded DNA binding;regulation of transcription, DNA-templated;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The aggregation, arrangement and bonding together of the mature ribosome and of its subunits. [GOC:ma];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. [GOC:isa_complete];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid];Interacting selectively and non-covalently with ribosomal RNA. [GOC:jl];The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];Interacting selectively and non-covalently with single-stranded RNA. [GOC:jl];Interacting selectively and non-covalently with double-stranded DNA. [GOC:elh, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0509600-01",0.25058482038047,0.483894357138671,1.58720921358138,"OS04G0509600","AMT1-1",5.93639741354445,21.1310053365904,41.0166619425756,40.3121012413241,"no","OS04G0509600","Ammonium transporter 1 member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XQ12]","Ammonium transporter, Ammonium uptake, Ammonium transport (Os04t0509600-01);Similar to OSIGBa0157K09-H0214G12.4 protein. (Os04t0509600-02)",4,25500515,25502557,"GO:0072488;GO:0015696;GO:0008519;GO:0006810;GO:0016020;GO:0016021;GO:0005887;GO:0015695","ammonium transmembrane transport;ammonium transport;ammonium transmembrane transporter activity;transport;membrane;integral component of membrane;integral component of plasma membrane;organic cation transport","The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+. [GOC:mah];The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [ISBN:0198506732];Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. [GOC:go_curators, ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage. [GOC:ai]"]
["OS04T0550400-01",0.251142647563085,0.48427860189013905,-0.00615106035257559,"OS04G0550400",null,1457.5331047794,1452.38500167215,1537.71118519322,1359.82663409842,"no","OS04G0550400","Os04g0550400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDG3]","E3 ligases of H2Bub1, Transcriptional regulation of anther development (Os04t0550400-01)",4,27551423,27559580,"GO:0016569;GO:0016567;GO:0046872;GO:0005634;GO:0016740","covalent chromatin modification;protein ubiquitination;metal ion binding;nucleus;transferase activity","The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. [GOC:mah, GOC:vw];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0246300-00",0.2518319288548,0.48481652710758205,0.030968171334974003,"OS02G0246300",null,855.154038398543,801.848275196745,798.126744599019,894.828446001548,"no","OS02G0246300","Os02g0246300 protein [Source:UniProtKB/TrEMBL;Acc:Q0E2E9]","Prefoldin domain containing protein. (Os02t0246300-00)",2,8262546,8265570,"GO:0016272;GO:0051131;GO:0006457;GO:0051087;GO:0005737;GO:0051082;GO:0043622;GO:0005829","prefoldin complex;chaperone-mediated protein complex assembly;protein folding;chaperone binding;cytoplasm;unfolded protein binding;cortical microtubule organization;cytosol","A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. [GOC:jl, PMID:17384227, PMID:24068951, PMID:9630229];The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex. [GOC:ai];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. [GOC:curators, GOC:dph, GOC:jl, GOC:mah];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS11T0157400-01",0.252523134320217,0.48550039643517,-0.0251760349954473,"OS11G0157400",null,642.129969238477,728.765826494603,680.066431522636,667.113804499179,"no","OS11G0157400","Exocyst subunit EXO70 family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAC2]","Exo70 exocyst complex subunit family protein. (Os11t0157400-01)",11,2759765,2764949,"GO:0000145;GO:0006887","exocyst;exocytosis","A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. [GOC:cilia, PMID:15292201, PMID:27243008, PMID:9700152];A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. [GOC:mah, ISBN:0716731363, PMID:22323285]"]
["OS01T0362000-01",0.25258901952886204,0.48551460266363206,0.0889826026584773,"OS01G0362000",null,326.161254216369,336.590996135219,326.861197360234,378.055249566156,"no","OS01G0362000","Os01g0362000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V314]","Conserved hypothetical protein. (Os01t0362000-01)",1,14752203,14754630]
["OS08T0180100-02",0.25303646293943,0.48572100410491104,-0.0230817906380064,"OS08G0180100",null,1230.81012347763,1162.95775388914,1239.62271809092,1116.15181967692,"no","OS08G0180100","Os08g0180100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCN3]","Similar to SET domain-containing protein. (Os08t0180100-01);Similar to SET domain protein. (Os08t0180100-02)",8,4692655,4696632]
["OS03T0816800-01",0.253786507449973,0.48649048661134303,0.354457632521044,"OS03G0816800",null,54.0204577295862,42.2025407998287,54.6394837378301,68.3820864848344,"no","OS03G0816800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10BI2]","Protein of unknown function DUF567 family protein. (Os03t0816800-01)",3,34245096,34246212]
["OS02T0158600-01",0.25449938979594,0.487037577806309,-0.0754451242577867,"OS02G0158600",null,238.50541714572,254.244575062383,235.144921086019,232.499094048437,"no","OS02G0158600","Os02g0158600 protein [Source:UniProtKB/TrEMBL;Acc:Q6ET41]","Conserved hypothetical protein. (Os02t0158600-01)",2,3191322,3194133]
["OS05T0443800-01",0.25507497901135,0.48739850409525604,0.0263344086126257,"OS05G0443800",null,345.527078685466,370.558894827764,377.597860831076,351.679301922006,"no","OS05G0443800","Os05g0443800 protein [Source:UniProtKB/TrEMBL;Acc:Q6F2N1]","Similar to Plastid division protein ftsZ1 precursor. (Os05t0443800-01)",5,21711936,21715624,"GO:0005525;GO:0003924;GO:0009507;GO:0005737;GO:0010020","GTP binding;GTPase activity;chloroplast;cytoplasm;chloroplast fission","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis. [GOC:lr]"]
["OS01T0550200-00",0.25551670404875904,0.48787449434956304,-0.0382461789614494,"OS01G0550200",null,296.602890553011,313.945730340189,287.832994690355,306.742502231972,"no","OS01G0550200","Os01g0550200 protein [Source:UniProtKB/TrEMBL;Acc:Q8RYS9]","Cyclin-like F-box domain containing protein. (Os01t0550200-00)",1,20595249,20598788]
["OS02T0210800-01",0.255875125410126,0.48819689199588906,0.0470010082114751,"OS02G0210800",null,310.872445424977,323.209702710883,339.545363227944,315.534484780022,"no","OS02G0210800","Os02g0210800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KEX0]","Similar to Sterol glucosyltransferase-like protein (Fragment). (Os02t0210800-01)",2,6188722,6193629,"GO:0016758;GO:0008152;GO:0016740","transferase activity, transferring hexosyl groups;metabolic process;transferase activity","Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0679500-01",0.256041227535929,0.48822092583094806,-0.0690767983913463,"OS06G0679500",null,400.313530486981,445.27125413834,423.266502699467,382.785333033947,"no","OS06G0679500","Hexosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q655N8]","Similar to Avr9 elicitor response-like protein. (Os06t0679500-01);Similar to Beta-1,3-galactosyltransferase sqv-2. (Os06t0679500-02)",6,28275643,28279473,"GO:0006486;GO:0008378;GO:0016757;GO:0016020;GO:0005794;GO:0000139;GO:0016021;GO:0016740","protein glycosylation;galactosyltransferase activity;transferase activity, transferring glycosyl groups;membrane;Golgi apparatus;Golgi membrane;integral component of membrane;transferase activity","A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr];Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [ISBN:0198506732];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0580700-01",0.256813444540375,0.48858362025017305,1.96058067679457E-3,"OS02G0580700",null,346.546332604892,324.239032974294,330.764017627222,340.933545474389,"no","OS02G0580700","Os02g0580700 protein [Source:UniProtKB/TrEMBL;Acc:Q6EP38]","Conserved hypothetical protein. (Os02t0580700-01)",2,22355195,22362054]
["OS04T0492900-01",0.25747116978872103,0.48888365225956204,0.137841969295234,"OS04G0492900",null,364.721353213916,424.635882601238,463.410109081054,405.086569291791,"no","OS04G0492900","OJ990528_30.7 protein [Source:UniProtKB/TrEMBL;Acc:Q7XSB6]","Similar to H0425E08.7 protein. (Os04t0492900-01);Similar to H0425E08.7 protein. (Os04t0492900-02);RNA-binding, CRM domain domain containing protein. (Os04t0492900-03)",4,24644149,24647800,"GO:0003723;","RNA binding;","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];"]
["OS02T0196900-01",0.25789796224127,0.48924548540175605,0.0548710039240979,"OS02G0196900",null,263.986765131374,271.74318954036,270.27030348891,286.227876286521,"no","OS02G0196900","Os02g0196900 protein [Source:UniProtKB/TrEMBL;Acc:Q0E328]","Similar to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS). (Os02t0196900-01)",2,5422168,5424364,"GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016740","fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;transferase activity","The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0136400-00",0.25858901871863904,0.48979613762503804,-1.12528239345602,"OS10G0136400",null,17.3273166302446,8.23464210728365,3.90282026698787,7.81509559826679,"no","OS10G0136400","Os10g0136400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSB2]","Similar to Protein kinase domain containing protein, expressed. (Os10t0136400-00)",10,2249407,2252236,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0212700-00",0.258700516230262,0.48982512220296,-1.15441268165018,"OS04G0212700",null,9.54449365778057,11.6575212392127,3.16997584782531,6.35500894049043,"no","OS04G0212700","Os04g0212700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7C1]","Similar to Histone H2A. (Os04t0212700-00)",4,7546093,7546626,"GO:0000786;GO:0005694;GO:0046982;GO:0003677;GO:0005634;GO:0016020;GO:0016021","nucleosome;chromosome;protein heterodimerization activity;DNA binding;nucleus;membrane;integral component of membrane","A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0708900-01",0.259278750734429,0.490329278951023,0.21002985529703702,"OS03G0708900",null,379.162458026529,322.180372447473,446.872920570111,364.378832269189,"no","OS03G0708900","Os03g0708900 protein [Source:UniProtKB/TrEMBL;Acc:Q10E42]","Zinc finger, RanBP2-type domain containing protein. (Os03t0708900-01)",3,28588615,28593641,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS02T0125800-01",0.25992486056107,0.49077463320325104,-9.4872064036704911E-4,"OS02G0125800",null,399.547536415052,441.582683003086,431.261639502159,409.315631959223,"no","OS02G0125800","RNA polymerase II transcription factor B subunit 4 [Source:Projected from Arabidopsis thaliana (AT1G18340) UniProtKB/Swiss-Prot;Acc:Q8LF41]","Transcription factor Tfb4 family protein. (Os02t0125800-01)",2,1347163,1351333,"GO:0003684;GO:0000439;GO:0006289;GO:0006355;GO:0008094;GO:0005675;GO:0008353;GO:0008135;GO:0006412;GO:0070816","damaged DNA binding;core TFIIH complex;nucleotide-excision repair;regulation of transcription, DNA-templated;DNA-dependent ATPase activity;holo TFIIH complex;RNA polymerase II carboxy-terminal domain kinase activity;translation factor activity, RNA binding;translation;phosphorylation of RNA polymerase II C-terminal domain","Interacting selectively and non-covalently with damaged DNA. [GOC:jl];The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD. [GOC:ew, GOC:krc, PMID:14500720, PMID:17215295, PMID:22308316, PMID:22572993, PMID:23028141, PMID:7813015];A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). [PMID:10197977];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. [EC:3.6.1.3, GOC:jl];A complex that is capable of kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. It is composed of  the core TFIIH complex and the TFIIK complex. [GOC:ew, GOC:krc, PMID:14500720, PMID:22308316, PMID:22572993, PMID:7813015];Catalysis of the reaction: ATP + (DNA-directed RNA polymerase II) = ADP + phospho-(DNA-directed RNA polymerase II); phosphorylation occurs on residues in the carboxy-terminal domain (CTD) repeats. [EC:2.7.11.23, GOC:mah];Functions during translation by interacting selectively and non-covalently with RNA during polypeptide synthesis at the ribosome. [GOC:ai, GOC:vw];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The process of introducing a phosphate group on to an amino acid residue in the C-terminal domain of RNA polymerase II. Typically, this occurs during the transcription cycle and results in production of an RNA polymerase II enzyme where the carboxy-terminal domain (CTD) of the largest subunit is extensively phosphorylated, often referred to as hyperphosphorylated or the II(0) form. Specific types of phosphorylation within the CTD are usually associated with specific regions of genes, though there are exceptions. The phosphorylation state regulates the association of specific complexes such as the capping enzyme or 3'-RNA processing machinery to the elongating RNA polymerase complex. [GOC:krc, GOC:mah, PMID:17079683]"]
["OS09T0564000-01",0.26033793572464303,0.49092513015674705,0.335044779433782,"OS09G0564000",null,65.2379443338686,44.1270723150807,62.9097472269193,75.045095968338,"no","OS09G0564000","Os09g0564000 protein [Source:UniProtKB/TrEMBL;Acc:Q650Y5]","Peptidase C1A, papain family protein. (Os09t0564000-01)",9,22420898,22422556,"GO:0005764;GO:0051603;GO:0004197;GO:0005615;GO:0006508;GO:0016787;GO:0008234;GO:0008233","lysosome;proteolysis involved in cellular protein catabolic process;cysteine-type endopeptidase activity;extracellular space;proteolysis;hydrolase activity;cysteine-type peptidase activity;peptidase activity","A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions. [GOC:mah, ISBN:0198506732];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS01T0887700-03",0.26119018689642903,0.49173543197311403,-1.17986149737234,"OS01G0887700",null,111.103713602844,222.240914164355,117.986287809238,29.1499878570853,"no","OS01G0887700","PHD finger protein ALFIN-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q7F2Z1]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0887700-01);Similar to Nucleic acid binding protein. (Os01t0887700-02);Similar to Nucleic acid binding protein. (Os01t0887700-03)",1,38566148,38570861,"GO:0046872;GO:0042393;GO:0016569;GO:0005634;GO:0006355;GO:0006351","metal ion binding;histone binding;covalent chromatin modification;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. [GOC:mah, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0164700-01",0.261324231874404,0.49183625529642,-0.0627384980571172,"OS03G0164700",null,494.338150921685,564.07298434893,526.880736043362,486.489700992108,"no","OS03G0164700","Os03g0164700 protein [Source:UniProtKB/TrEMBL;Acc:Q8S5U3]","Carbohydrate/purine kinase domain containing protein. (Os03t0164700-01)",3,3479411,3482159,"GO:0005737;GO:0016310;GO:0016301;GO:0019200;GO:0046835;GO:0005634","cytoplasm;phosphorylation;kinase activity;carbohydrate kinase activity;carbohydrate phosphorylation;nucleus","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a carbohydrate substrate molecule. [GOC:jl];The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0809900-01",0.261733266039934,0.492008080462602,-0.0951487924065804,"OS02G0809900",null,352.661856121449,333.503005344988,347.35100376192,295.019858834571,"no","OS02G0809900","Os02g0809900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DWK8]","Quinoprotein amine dehydrogenase, beta chain-like domain containing protein. (Os02t0809900-01)",2,34615105,34616451]
["OS08T0233300-02",0.262475185373652,0.49264759641368705,0.0441616427691607,"OS08G0233300",null,323.510792046804,306.162578317601,338.399601905701,310.846433027126,"no","OS08G0233300","Os08g0233300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDD7]","Similar to cDNA clone:J013061K19, full insert sequence. (Os08t0233300-01);Similar to cDNA clone:J013001A08, full insert sequence. (Os08t0233300-02)",8,8104943,8107543,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0510200-03",0.263203664739317,0.49327720467780106,-0.6479411607203911,"OS07G0510200",null,23.7189270341514,22.0781705737079,16.8188569806152,12.4084116110949,"no","OS07G0510200","Os07g0510200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z4B3]","Glycoside hydrolase, family 17 protein. (Os07t0510200-01);Glycoside hydrolase, family 17 protein. (Os07t0510200-02);Similar to glucan endo-1,3-beta-glucosidase 3. (Os07t0510200-03)",7,19436998,19442748,"GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0016020;GO:0016021;GO:0030247;GO:0046658","metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;membrane;integral component of membrane;polysaccharide binding;anchored component of plasma membrane","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah]"]
["OS01T0531500-01",0.26397462361628804,0.493974331438205,0.75307404521259,"OS01G0531500",null,89.6094070828829,105.577833267864,214.451842795427,114.512859113493,"no","OS01G0531500","Carboxymethylenebutenolidase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8LQS5]","Dienelactone hydrolase domain containing protein. (Os01t0531500-01);Similar to protein usf. (Os01t0531500-02)",1,19135843,19139893,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS02T0805500-01",0.26462764243471804,0.49441337660120505,-0.157945257467904,"OS02G0805500",null,143.482045714863,149.137080121295,125.865953610359,136.40877626294,"no","OS02G0805500","PAP-specific phosphatase HAL2-like [Source:Projected from Arabidopsis thaliana (AT5G54390) UniProtKB/Swiss-Prot;Acc:Q38945]","Similar to PAP-specific phosphatase HAL2-like (3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')- phosphohydrolase) (DPNPase) (Halotolerance protein). (Os02t0805500-01)",2,34362624,34365534,"GO:0006790;GO:0008441;GO:0046854;GO:0016311","sulfur compound metabolic process;3'(2'),5'-bisphosphate nucleotidase activity;phosphatidylinositol phosphorylation;dephosphorylation","The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:ai];Catalysis of the reaction: adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate. [EC:3.1.3.7];The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS08T0547100-03",0.264893309722888,0.49443481146148804,-0.08818798580966801,"OS08G0547100",null,342.518653111074,388.897064127597,326.225197782203,361.820145030581,"no","OS08G0547100","Probable 6-phosphogluconolactonase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6Z9C3]","Similar to 6-phosphogluconolactonase. (Os08t0547100-01);6-phosphogluconolactonase domain containing protein. (Os08t0547100-02);6-phosphogluconolactonase domain containing protein. (Os08t0547100-03)",8,27403444,27406438,"GO:0005737;GO:0017057;GO:0006098;GO:0009536;GO:0009507;GO:0005975;GO:0016787;GO:0009051;","cytoplasm;6-phosphogluconolactonase activity;pentose-phosphate shunt;plastid;chloroplast;carbohydrate metabolic process;hydrolase activity;pentose-phosphate shunt, oxidative branch;","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: 6-O-phosphono-D-glucono-1,5-lactone + H(2)O = 6-phospho-D-gluconate + H(+). [EC:3.1.1.31, RHEA:12559];The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2). [ISBN:0198506732, MetaCyc:OXIDATIVEPENT-PWY];"]
["OS07T0248900-01",0.265007859611436,0.49444280329113405,0.17415003619517602,"OS07G0248900",null,119.25270857286,121.622222743749,136.598709344575,135.180348309921,"no","OS07G0248900","Os07g0248900 protein [Source:UniProtKB/TrEMBL;Acc:Q0D7H0]","Transposase, MuDR, plant domain containing protein. (Os07t0248900-01)",7,8275770,8278961,"GO:0006313;GO:0003676;GO:0003677;GO:0008270;GO:0004803","transposition, DNA-mediated;nucleic acid binding;DNA binding;zinc ion binding;transposase activity","Any process involved in a type of transpositional recombination which occurs via a DNA intermediate. [GOC:jp, ISBN:0198506732, ISBN:1555812090];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element. [GOC:bm, ISBN:0198506732]"]
["OS11T0483950-00",0.265565736128411,0.49475970304257605,-0.556646519749967,"OS11G0483950",null,27.7593229072629,35.0155997159628,23.4656871942749,19.2137699311531,"no","OS11G0483950","Os11g0483950 protein [Source:UniProtKB/TrEMBL;Acc:Q2R484]","Pentatricopeptide repeat domain containing protein. (Os11t0483950-00)",11,17031951,17034202,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS04T0379800-01",0.266135442768762,0.49516515239630604,0.0610836199799078,"OS04G0379800",null,329.219015974648,321.151042184062,361.986579763125,316.511371729805,"no","OS04G0379800","Os04g0379800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDT0]","Conserved hypothetical protein. (Os04t0379800-01)",4,18554460,18559331]
["OS12T0566400-01",0.266822586057368,0.495710772224063,-0.164373142305065,"OS12G0566400",null,1762.31253308346,2074.52240519601,1602.28206533031,1821.3877177105,"no","OS12G0566400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QNG6]","Magnesium transporter domain containing protein. (Os12t0566400-01)",12,23279939,23282625,"GO:0072546;GO:0022890;GO:0005794;GO:0005886;GO:0005769;GO:0098655;GO:0016020;GO:0016021","ER membrane protein complex;inorganic cation transmembrane transporter activity;Golgi apparatus;plasma membrane;early endosome;cation transmembrane transport;membrane;integral component of membrane","A transmembrane protein complex that is involved in protein folding in the endoplasmic reticulum. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6. [GOC:dgf, PMID:19325107];Enables the transfer of inorganic cations from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways. [GOC:mah, NIF_Subcellular:nlx_subcell_20090701, PMID:19696797];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0635900-01",0.26735902548766605,0.49601365962467703,0.21827724985535402,"OS04G0635900","MRE11",430.125153997837,410.702775100772,552.249067778783,425.92271010554,"no","OS04G0635900","Double-strand break repair protein MRE11 [Source:UniProtKB/Swiss-Prot;Acc:Q7XQR9]","DNA repair exonuclease family protein. (Os04t0635900-01)",4,32342580,32348393,"GO:0051321;GO:0005515;GO:0004527;GO:0030870;GO:0006302;GO:0030145;GO:0004519;GO:0006974;GO:0006281;GO:0004518;GO:0016787;GO:0090305;GO:0008408;GO:0046872;GO:0005634","meiotic cell cycle;protein binding;exonuclease activity;Mre11 complex;double-strand break repair;manganese ion binding;endonuclease activity;cellular response to DNA damage stimulus;DNA repair;nuclease activity;hydrolase activity;nucleic acid phosphodiester bond hydrolysis;3'-5' exonuclease activity;metal ion binding;nucleus","Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. [GOC:mah, ISBN:0198547684];Trimeric protein complex that possesses endonuclease activity; involved in meiotic recombination, DNA repair and checkpoint signaling. In Saccharomyces cerevisiae, the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins orthologous to the Saccharomyces cerevisiae proteins. [GOC:mah, GOC:vw, PMID:11988766, PMID:17674145];The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. [GOC:elh];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0267000-01",0.26752553848270905,0.496220291864216,-0.11269474597166101,"OS02G0267000",null,232.389893629163,253.215244798972,207.825179217104,241.291076596487,"no","OS02G0267000","Chloroplast processing peptidase [Source:Projected from Arabidopsis thaliana (AT3G24590) UniProtKB/Swiss-Prot;Acc:Q8H0W1]","Similar to Signal peptidase I (EC 3.4.21.89) (Leader peptidase I). (Os02t0267000-01)",2,9544181,9550570,"GO:0008236;GO:0006508;GO:0016021;GO:0016020","serine-type peptidase activity;proteolysis;integral component of membrane;membrane","Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0701000-01",0.268073650079449,0.496667050704482,0.956463911479947,"OS11G0701000",null,8.45747755903652,5.23884882546916,14.0727608842111,12.5056140649158,"no","OS11G0701000","Glycosyl hydrolases family 18 [Source:UniProtKB/TrEMBL;Acc:Q53NL1]","Class III chitinase homologue (OsChib3H-c). (Os11t0701000-01)",11,28727508,28728821,"GO:0045493;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0004568;GO:0008061;GO:0006032","xylan catabolic process;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;chitinase activity;chitin binding;chitin catabolic process","The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. [EC:3.2.1.14, GOC:bf, GOC:kah, GOC:pde, PMID:11468293];Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:0198506732]"]
["OS05T0420000-01",0.268893512067703,0.49716402665200504,-0.121819838758785,"OS05G0420000",null,189.581229013265,214.100694789375,183.43255254843,187.562294358403,"no","OS05G0420000","Os05g0420000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DI34]","Hypothetical protein. (Os05t0420000-01)",5,20591346,20592137,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0957100-01",0.269351787357941,0.49747526341191,0.163175943892288,"OS01G0957100",null,303.737667988994,271.74318954036,289.784404823849,354.609962771356,"no","OS01G0957100","Os01g0957100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JFW9]","Protein kinase, core domain containing protein. (Os01t0957100-01)",1,42184508,42187651,"GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0251700-00",0.270111257737491,0.49813619044529805,-0.152030920778811,"OS03G0251700",null,159.00361143048,152.340878984747,133.671594144334,146.533042467502,"no","OS03G0251700","Os03g0251700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VVK7]","Similar to Protein kinase domain containing protein, expressed. (Os03t0251700-00)",3,7998159,8000400,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0782200-03",0.27063464288779104,0.49848855184830204,0.0488960091870045,"OS02G0782200",null,799.433777823261,822.875003840553,789.792255046938,888.442398410973,"no","OS02G0782200","Os02g0782200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K7F1]","Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-02);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-03)",2,33159664,33168993,"GO:0000288;GO:0030015;GO:0000932;GO:0017148;GO:0005634;GO:0006355;","nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;CCR4-NOT core complex;P-body;negative regulation of translation;nucleus;regulation of transcription, DNA-templated;","A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability. [GOC:jp, GOC:krc];The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p. [GOC:sart, PMID:11113136];A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. [GOC:clt, PMID:12730603];Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];"]
["OS03T0825600-02",0.270789972112902,0.498504171366196,0.0819320258014356,"OS03G0825600",null,209.824994995895,209.336788985239,212.739753185052,230.915550276221,"no","OS03G0825600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10BA6]","Hypothetical conserved gene. (Os03t0825600-01);Conserved hypothetical protein. (Os03t0825600-02)",3,34674979,34676923,"GO:0009639;GO:0009959","response to red or far red light;negative gravitropism","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:ai, GOC:mtg_far_red];The orientation of plant parts away from gravity. [GOC:sm]"]
["OS08T0102700-02",0.27115187466246704,0.49874252409517206,0.206408676918926,"OS08G0102700",null,571.965377370717,743.63279887792,717.270427680024,800.683065394194,"no","OS08G0102700","Harpin-induced protein 1 family (HIN1)-like [Source:UniProtKB/TrEMBL;Acc:Q69U64]","Harpin-induced 1 domain containing protein. (Os08t0102700-01);Harpin-induced 1 domain containing protein. (Os08t0102700-02);Harpin-induced 1 domain containing protein. (Os08t0102700-03);Harpin-induced 1 domain containing protein. (Os08t0102700-04);Harpin-induced 1 domain containing protein. (Os08t0102700-05)",8,151908,153452,"GO:0009506;GO:0004871;GO:0046658;GO:0006952;GO:0007165;GO:0016020;GO:0016021","plasmodesma;signal transducer activity;anchored component of plasma membrane;defense response;signal transduction;membrane;integral component of membrane","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0599700-01",0.272058775292904,0.49956576174322204,0.10292804651617901,"OS04G0599700",null,229.332131870885,223.364667160069,260.51325282144,225.660885399954,"no","OS04G0599700","OSJNBa0083N12.6 protein [Source:UniProtKB/TrEMBL;Acc:Q7XPT4]","Cobalamin (vitamin B12) biosynthesis CobW-like domain containing protein. (Os04t0599700-01)",4,30264259,30267376]
["OS08T0534200-02",0.272544692175731,0.499911394620057,0.8122206401483331,"OS08G0534200",null,96.7183420642277,33.7959157552868,147.950218452135,81.2213482984016,"no","OS08G0534200","Os08g0534200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIE4]","Similar to HEAT repeat family protein. (Os08t0534200-01);Similar to HEAT repeat family protein. (Os08t0534200-02)",8,26652114,26655784]
["OS01T0687500-01",0.27321943080653804,0.499977651054515,-0.09499498376691949,"OS01G0687500",null,293.426286824409,312.63301453551,308.619652612385,258.818824523686,"no","OS01G0687500","Met-tRNAi formyl transferase-like [Source:UniProtKB/TrEMBL;Acc:Q5N7L5]","Methionine tRNA Formyltransferase-like domain containing protein. (Os01t0687500-01)",1,28364038,28368033,"GO:0016742;GO:0006413;GO:0009058;GO:0004479;GO:0003824;GO:0016740;GO:0071951","hydroxymethyl-, formyl- and related transferase activity;translational initiation;biosynthetic process;methionyl-tRNA formyltransferase activity;catalytic activity;transferase activity;conversion of methionyl-tRNA to N-formyl-methionyl-tRNA","Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor). [EC:2.1.2, GOC:mah];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of the reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA + H2O = tetrahydrofolate + N-formylmethionyl-tRNA. [EC:2.1.2.9];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The modification process that results in the conversion of methionine charged on a tRNA(fMet) to N-formyl-methionine-tRNA(fMet). [GOC:jsg, PMID:5337045]"]
["OS03T0180300-04",0.273155690612925,0.499977651054515,-0.014199004253152,"OS03G0180300",null,638.697876425486,628.089706785478,659.701461929943,594.67955106222,"no","OS03G0180300","Ataxin-2 C-terminal region family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10QX0]","Similar to Ataxin-2 C-terminal region family protein, expressed. (Os03t0180300-01);Similar to Ataxin-2 C-terminal region family protein, expressed. (Os03t0180300-02);Hypothetical conserved gene. (Os03t0180300-03);Hypothetical conserved gene. (Os03t0180300-04)",3,4203524,4210236,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0630600-01",0.273127693571596,0.499977651054515,-0.19823779209118902,"OS12G0630600",null,176.330928060725,157.4875303018,124.890248543612,166.070781463169,"no","OS12G0630600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QLS1]","Carbohydrate/puine kinase, PfkB, conserved site containing protein. (Os12t0630600-01)",12,26985401,26986264]
["OS05T0180300-01",0.274230897064883,0.5006454954960441,-0.168350288034659,"OS05G0180300",null,187.879330857111,232.542298569357,174.870172935719,199.246070263662,"no","OS05G0180300","Os05g0180300 protein [Source:UniProtKB/TrEMBL;Acc:Q5KQK4]","Leucine-rich repeat, plant specific containing protein. (Os05t0180300-01)",5,4813366,4815407]
["OS06T0187000-01",0.27492556330149703,0.5008960468714491,0.0388544571654097,"OS06G0187000",null,362.67393837678,395.992474294116,410.448292082134,368.928042823023,"no","OS06G0187000","Os06g0187000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WTQ9]","Similar to Origin recognition complex 1. (Os06t0187000-01);Non-protein coding transcript. (Os06t0187000-02)",6,4393423,4401129]
["OS08T0100150-01",0.274995092263692,0.500909658101503,0.24099522033602203,"OS08G0100150",null,73.3862821986831,84.4050815996574,87.813456007227,98.6655819281182,"no","OS08G0100150","Os08g0100150 protein [Source:UniProtKB/TrEMBL;Acc:B9FYL7]","Conserved hypothetical protein. (Os08t0100150-01)",8,17351,20091]
["OS06T0103400-02",0.27608465230621,0.501910684543169,1.05104629735224,"OS06G0103400",null,48.1919086175279,9.73366676273577,55.3594214569833,64.6642254720669,"no","OS06G0103400","Os06g0103400 protein [Source:UniProtKB/TrEMBL;Acc:Q8H632]","Nucleic acid-binding, OB-fold domain containing protein. (Os06t0103400-01);Similar to OB-fold nucleic acid binding domain containing protein. (Os06t0103400-02)",6,219460,221117]
["OS02T0823800-01",0.27649172340100403,0.502017615872645,0.11873408375913501,"OS02G0823800",null,171.896432616381,186.279923505114,198.144563976526,190.756771587179,"no","OS02G0823800","Os02g0823800 protein [Source:UniProtKB/TrEMBL;Acc:Q6K9X0]","Smg8/Smg9 domain containing protein. (Os02t0823800-01);Hypothetical conserved gene. (Os02t0823800-02)",2,35379378,35385150,"GO:0000184","nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. [GOC:krc, GOC:ma, PMID:10025395]"]
["OS04T0571200-01",0.276562240831353,0.502021839574565,-0.0955732541693589,"OS04G0571200",null,196.716006449248,200.719401365039,193.189603215899,178.770311810353,"no","OS04G0571200","Os04g0571200 protein [Source:UniProtKB/TrEMBL;Acc:B7EJC9]","Similar to OSIGBa0111L12.9 protein. (Os04t0571200-01)",4,28744397,28747841,"GO:0043161;GO:0061630;GO:0016567;GO:0048437","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;floral organ development","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The process whose specific outcome is the progression of the floral organ over time, from its formation to the mature structure. [GOC:go_curators, GOC:PO_curators, PO:0025395]"]
["OS08T0478100-01",0.27705250594019504,0.502150723056761,-0.163768923377678,"OS08G0478100",null,184.484959416134,222.335336896659,196.11671841614,167.047668412953,"no","OS08G0478100","Os08g0478100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJC5]","Uncharacterised protein family UPF0029, N-terminal domain containing protein. (Os08t0478100-01)",8,23576748,23579088,"GO:0042626;GO:0016887;GO:0055085;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;ATPase activity;transmembrane transport;transport;integral component of membrane;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0301000-01",0.277568764258645,0.5024563265408031,0.236433081141523,"OS02G0301000",null,99.5663102812879,87.1254544386707,104.176055192051,115.761103549327,"no","OS02G0301000","Zinc finger CCCH domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q6K4V3]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0301000-01);Similar to RING finger protein 113A. (Os02t0301000-02)",2,11578491,11583536,"GO:0016020;GO:0016021;GO:0046872;GO:0003677;GO:0034247;GO:0045292;GO:0005684","membrane;integral component of membrane;metal ion binding;DNA binding;snoRNA splicing;mRNA cis splicing, via spliceosome;U2-type spliceosomal complex","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];The process of removing sections of a primary snoRNA transcript to remove sequences not present in the mature form of the snoRNA and joining the remaining sections to form the mature form of the snoRNA. [GOC:mah];The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript. [GOC:krc, http://calspace.ucsd.edu/origins/Glossary/C.htm, ISBN:0879695897];Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron that has canonical consensus sequences near the 5' and 3' ends. [GOC:krc, GOC:mah, PMID:11343900]"]
["OS02T0106600-01",0.27832579943025804,0.502990369300739,0.50666328051244,"OS02G0106600",null,74.4222075904331,71.0285976909388,74.167119781211,132.483625158466,"no","OS02G0106600","Os02g0106600 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETD0]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0106600-01)",2,385998,386946,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0824200-01",0.278831344270148,0.5033562172022791,2.6372588503683504E-3,"OS03G0824200",null,493.318897002259,435.406701422623,452.727150970593,477.697718444058,"no","OS03G0824200","Methylase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q852B9]","Methyltransferase small domain containing protein. (Os03t0824200-01)",3,34614610,34616853,"GO:0006479;GO:0008276;GO:0008757;GO:0005737;GO:0032259;GO:0008168;GO:0003676","protein methylation;protein methyltransferase activity;S-adenosylmethionine-dependent methyltransferase activity;cytoplasm;methylation;methyltransferase activity;nucleic acid binding","The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom. [GOC:ai];Catalysis of the transfer of a methyl group (CH3-) to a protein. [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS10T0190100-01",0.278884378786809,0.5033562172022791,0.39939587048780906,"OS10G0190100",null,32.6161254216369,28.8212473754928,40.0039077366256,41.0292518909007,"no","OS10G0190100","Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSA8]","Similar to Sulfotransferase domain containing protein, expressed. (Os10t0190100-01)",10,6252107,6254450,"GO:0008146;GO:0016740","sulfotransferase activity;transferase activity","Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. [EC:2.8.2, GOC:curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0139300-02",0.27974754032874904,0.5041197860165111,0.0800757452372137,"OS02G0139300",null,454.842992822598,510.347873409885,492.86702389806,527.410700119356,"no","OS02G0139300","Os02g0139300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YXZ6]","Glycoside hydrolase, family 17 protein. (Os02t0139300-01);Glycoside hydrolase, family 17 protein. (Os02t0139300-02);Hypothetical gene. (Os02t0139300-03)",2,2096626,2101451,"GO:0030247;GO:0004553;GO:0046658;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005886;GO:0009506","polysaccharide binding;hydrolase activity, hydrolyzing O-glycosyl compounds;anchored component of plasma membrane;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;plasma membrane;plasmodesma","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS07T0108200-00",0.280415777171711,0.504587518748716,0.0481373981816765,"OS07G0108200",null,289.468113117028,267.625868486719,303.444275758307,272.551458989554,"no","OS07G0108200","Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A0P0X1Q4]","Similar to transparent testa 12 protein. (Os07t0108200-00)",7,440518,444836,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0143900-02",0.28109858425932804,0.505187225689538,-0.0152430863563473,"OS06G0143900",null,1679.47792878401,1822.47461877245,1760.24202130804,1704.90472004791,"no","OS06G0143900","Coatomer subunit beta'-1 [Source:UniProtKB/Swiss-Prot;Acc:Q5VQ78]","Similar to Coatomer protein complex, beta prime; beta'-COP protein. (Os06t0143900-01);Similar to Coatomer complex subunit. (Os06t0143900-02);Similar to Coatomer complex subunit. (Os06t0143900-03)",6,2320837,2329651,"GO:0030117;GO:0016192;GO:0006886;GO:0005198;GO:0030126;GO:0006891;GO:0006890;GO:0006888;GO:0031410;GO:0030663;GO:0015031;GO:0005737;GO:0006810;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0005794;GO:0000139","membrane coat;vesicle-mediated transport;intracellular protein transport;structural molecule activity;COPI vesicle coat;intra-Golgi vesicle-mediated transport;retrograde vesicle-mediated transport, Golgi to ER;ER to Golgi vesicle-mediated transport;cytoplasmic vesicle;COPI-coated vesicle membrane;protein transport;cytoplasm;transport;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;Golgi apparatus;Golgi membrane","Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. [GOC:mah, GOC:vw];One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. [GOC:mah, PMID:11252894];The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). [ISBN:0716731363];The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:0716731363];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The lipid bilayer surrounding a COPI-coated vesicle. [GOC:mah];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah]"]
["OS06T0694100-01",0.28181684590016304,0.505717698430045,-0.0329057921360999,"OS06G0694100",null,251.977122829148,249.704142470211,238.539514342385,251.828633589211,"no","OS06G0694100","Os06g0694100 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z8K1]","Similar to cDNA clone:J033051C12, full insert sequence. (Os06t0694100-01);Hypothetical conserved gene. (Os06t0694100-02)",6,28977492,28980795,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0670700-01",0.282626625041403,0.5064700949184671,0.31680485174570605,"OS02G0670700",null,103.971220968766,77.4429727618422,129.421637833513,96.5422436099096,"no","OS02G0670700","Os02g0670700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESP7]","Pentatricopeptide repeat domain containing protein. (Os02t0670700-01)",2,27237052,27241155,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS12T0583400-01",0.282604390493417,0.5064700949184671,-0.0534507376148328,"OS12G0583400",null,554.474132167828,623.774139626736,599.082910982638,536.310935431059,"no","OS12G0583400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QN09]","Conserved hypothetical protein. (Os12t0583400-01)",12,24215428,24217854,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0109300-01",0.28350761404061203,0.507304944604004,0.255257286016682,"OS12G0109300",null,65.4444245446109,83.6835889369347,90.867550025319,87.1239784081851,"no","OS12G0109300","Os12g0109300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y650]","Pentatricopeptide repeat domain containing protein. (Os12t0109300-01)",12,499852,502261,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS11T0655000-01",0.283919095261638,0.507387470661766,-0.0429938354944097,"OS11G0655000",null,252.093195991365,252.042559461195,255.649263250801,233.684369308708,"no","OS11G0655000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:B7EU74]","Conserved hypothetical protein. (Os11t0655000-01)",11,26203554,26205990,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0530600-01",0.28477104269367703,0.508063897556851,0.704321673605929,"OS02G0530600","PARP3",4.86926426986437,18.0304733223235,18.6448763311558,18.6674610894012,"no","OS02G0530600","Poly [ADP-ribose] polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0E0Q3]","Poly(ADP-ribose) polymerase, regulatory region domain containing protein. (Os02t0530600-01);Similar to Poly. (Os02t0530600-02)",2,19509828,19514935,"GO:0016757;GO:0003950;GO:0016740;GO:0051103;GO:0006273;GO:0003910;GO:0005737;GO:0006471;GO:0005634","transferase activity, transferring glycosyl groups;NAD+ ADP-ribosyltransferase activity;transferase activity;DNA ligation involved in DNA repair;lagging strand elongation;DNA ligase (ATP) activity;cytoplasm;protein ADP-ribosylation;nucleus","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. [EC:2.4.2.30];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair. [GOC:ai];The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork. [ISBN:071673706X, ISBN:0815316194];Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m). [EC:6.5.1.1];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0690700-01",0.285307822978399,0.508507004526568,-0.022799514046615003,"OS02G0690700",null,3129.10953263829,3306.20880607438,2992.48743971295,3341.93025520884,"no","OS02G0690700","AP-2 complex subunit mu [Source:Projected from Arabidopsis thaliana (AT5G46630) UniProtKB/Swiss-Prot;Acc:O23140]","Clathrin coat associated protein AP-50 domain containing protein. (Os02t0690700-01)",2,28355603,28360508,"GO:0015031;GO:0030131;GO:0016192;GO:0006886;GO:0006810","protein transport;clathrin adaptor complex;vesicle-mediated transport;intracellular protein transport;transport","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A membrane coat adaptor complex that links clathrin to a membrane. [GOC:mah];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS02T0803900-01",0.285995745425774,0.509033725853085,1.87423905543175,"OS02G0803900",null,2.03850783885231,2.05866052682091,5.8542304004818,9.16632479734329,"no","OS02G0803900","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQY8]","UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein. (Os02t0803900-01)",2,34275502,34277324,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0634400-01",0.286150062425714,0.509140801772198,0.33382557181509404,"OS03G0634400","CIPK7",298.362113768542,230.569979003942,276.862199297197,389.777892963556,"no","OS03G0634400","CBL-interacting protein kinase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q75GK4]","Serine/threonine protein kinase domain containing protein. (Os03t0634400-01)",3,24226372,24227930,"GO:0006468;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0007165;GO:0005524;GO:0000166;GO:0004672;GO:0016740","protein phosphorylation;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;signal transduction;ATP binding;nucleotide binding;protein kinase activity;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0182100-01",0.28673979860044,0.509329896428535,-0.12264037049752201,"OS01G0182100",null,192.638990771543,170.868823726136,174.651206947707,159.232572814686,"no","OS01G0182100","Os01g0182100 protein [Source:UniProtKB/TrEMBL;Acc:Q9AWM1]","Protein of unknown function DUF1618 domain containing protein. (Os01t0182100-01)",1,4306924,4309933]
["OS04T0405100-01",0.28726476356615904,0.5097585558734561,-0.0689316746442699,"OS04G0405100",null,867.385085431657,1004.62633708861,890.818725939981,893.851559051764,"no","OS04G0405100","Os04g0405100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9R6]","Similar to H0502B11.8 protein. (Os04t0405100-01)",4,20100165,20103018,"GO:0033365;GO:0015266;GO:0009941;GO:0071806;GO:0016020;GO:0016021","protein localization to organelle;protein channel activity;chloroplast envelope;protein transmembrane transport;membrane;integral component of membrane","A process in which a protein is transported to, or maintained in, a location within an organelle. [GOC:mah];Enables the energy-independent facilitated diffusion, mediated by passage of proteins through a transmembrane aqueous pore or channel. [GOC:rb];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];The directed movement of a protein across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:vw];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0512950-01",0.287866042402296,0.510082674706085,0.19181031901723403,"OS09G0512950",null,98.6693838510012,111.752524169507,120.427199705514,119.91587555136,"no","OS09G0512950","Os09g0512950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XP03]","Hypothetical gene. (Os09t0512950-01)",9,19960927,19963905]
["OS03T0708800-03",0.28858925618486103,0.5107022522112881,-0.0690567377208523,"OS03G0708800",null,240.882995064903,267.324699234616,247.709915987452,236.744686885285,"no","OS03G0708800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53RK1]","Hypothetical conserved gene. (Os03t0708800-01);Similar to GEBP transcription factor (Fragment). (Os03t0708800-02);Hypothetical conserved gene. (Os03t0708800-03)",3,28585243,28586711,"GO:0006355;","regulation of transcription, DNA-templated;","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];"]
["OS01T0564532-01",0.28889136243677604,0.510925622970685,0.589298717883431,"OS01G0564532",null,21.4043323079492,29.8505776389032,49.7609584040953,27.3528345939338,"no","OS01G0564532","Os01g0564532 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V459]","Hypothetical gene. (Os01t0564532-01)",1,21555254,21556833]
["OS11T0236000-01",0.289259943089328,0.511161419472794,-0.0625737640538125,"OS11G0236000",null,244.620940662277,223.364667160069,222.460755218308,225.660885399954,"no","OS11G0236000","Os11g0236000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y0Y2]","Similar to Glycerophosphodiester phosphodiesterase. (Os11t0236000-01)",11,7250435,7254536,"GO:0008889;GO:0008081;GO:0006629;GO:0016020;GO:0016021","glycerophosphodiester phosphodiesterase activity;phosphoric diester hydrolase activity;lipid metabolic process;membrane;integral component of membrane","Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate. [EC:3.1.4.46];Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. [EC:3.1.4, GOC:curators];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0505200-01",0.289970357096134,0.5116879493961051,1.24852898976556,"OS04G0505200",null,72.7815936366309,0,111.188143594415,61.7402221104018,"no","OS04G0505200","OSJNBa0014K14.21 protein [Source:UniProtKB/TrEMBL;Acc:Q7F8X9]","Similar to Protein binding protein. (Os04t0505200-01);Leucine-rich repeat, plant specific containing protein. (Os04t0505200-02);Similar to Protein binding protein. (Os04t0505200-03)",4,25217872,25219670]
["OS06T0524400-01",0.290608699050305,0.51209349252422,0.12248235058307501,"OS06G0524400",null,185.50421333556,217.188685579606,204.898064016863,233.47598099822,"no","OS06G0524400","Leaf senescence protein-like [Source:UniProtKB/TrEMBL;Acc:Q654T8]","Protein of unknown function DUF231, plant domain containing protein. (Os06t0524400-01)",6,19415281,19418327,"GO:0005794;GO:0071554;GO:0016413","Golgi apparatus;cell wall organization or biogenesis;O-acetyltransferase activity","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah];Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. [GOC:ai]"]
["OS04T0672200-01",0.291229121853951,0.512506890782899,0.13798126106793202,"OS04G0672200",null,938.732859791488,860.520100211141,1067.42134302118,912.412411097648,"no","OS04G0672200","Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:Q0J949]","Poly(ADP-ribose) polymerase, catalytic region domain containing protein. (Os04t0672200-01)",4,34314400,34320079,"GO:0016757;GO:0003950;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring glycosyl groups;NAD+ ADP-ribosyltransferase activity;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. [EC:2.4.2.30];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0205000-01",0.291934712993388,0.513090580113134,-0.25599497978743,"OS05G0205000",null,80.5210596346662,106.021017131277,74.1535850727695,82.0585037818013,"no","OS05G0205000","Os05g0205000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKB4]","Similar to NOD26-like membrane integral protein ZmNIP1-1. (Os05t0205000-01)",5,6539979,6540536,"GO:0034220;GO:0006833;GO:0015250;GO:0005887;GO:0006810;GO:0005215;GO:0016020;GO:0016021","ion transmembrane transport;water transport;water channel activity;integral component of plasma membrane;transport;transporter activity;membrane;integral component of membrane","A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Transport systems of this type enable facilitated diffusion of water (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, ISBN:0815340729];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0513000-01",0.29252846873305105,0.513633126645025,0.058920652057672,"OS08G0513000",null,816.705560506604,903.82235681386,862.34890984501,929.90116633774,"no","OS08G0513000","Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQ48]","Similar to Serine/threonine protein phosphatase. (Os08t0513000-01)",8,25437119,25440675,"GO:0006470;GO:0004721;GO:0016787","protein dephosphorylation;phosphoprotein phosphatase activity;hydrolase activity","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0170000-01",0.29283091996765304,0.513736569284298,-1.08473015314944,"OS03G0170000",null,7.64088087483405,7.98726816751997,0,7.36836669790698,"no","OS03G0170000","Os03g0170000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTK0]","Conserved hypothetical protein. (Os03t0170000-01)",3,3751182,3753905]
["OS03T0839700-00",0.293483187235473,0.514236918410237,-0.21048171082195802,"OS03G0839700",null,131.768266513368,118.006771129465,107.375242062055,108.492487917859,"no","OS03G0839700","Os03g0839700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W5F2]","Hypothetical conserved gene. (Os03t0839700-00)",3,35303778,35305155,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0346800-00",0.29422705172038705,0.514964761924913,-0.0457890433990492,"OS03G0346800",null,332.276777732926,301.593767179264,324.90978722674,289.158537135871,"no","OS03G0346800","Metal tolerance protein C1 [Source:Projected from Arabidopsis thaliana (AT2G47830) UniProtKB/Swiss-Prot;Acc:Q8L725]","Similar to metal tolerance protein. (Os03t0346800-00)",3,12954637,12959631,"GO:0005774;GO:0005773;GO:0098655;GO:0008324;GO:0006812;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020","vacuolar membrane;vacuole;cation transmembrane transport;cation transmembrane transporter activity;cation transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane","The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Enables the transfer of cation from one side of the membrane to the other. [GOC:dgf, GOC:mtg_transport, ISBN:0815340729];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0234700-01",0.29538045041578503,0.516234195900194,0.526137701805745,"OS08G0234700",null,19.5808559313495,16.1885726122681,23.4169216019272,28.0935151172801,"no","OS08G0234700","Os08g0234700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPH7]","Conserved hypothetical protein. (Os08t0234700-01)",8,8175612,8177396]
["OS11T0199801-00",0.29551889650503704,0.5163384036384481,0.309137229064721,"OS11G0199801",null,56.0589655684385,43.2318710632392,57.566598938071,65.4514256354844,"no","OS11G0199801","Os11g0199801 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZV7]","Conserved hypothetical protein. (Os11t0199801-00)",11,5010771,5013677]
["OS07T0647200-00",0.296043024462025,0.516647518267207,0.507548256641228,"OS07G0647200",null,91.7328527483539,48.3785223802914,80.9835205399983,118.203320923785,"no","OS07G0647200","Os07g0647200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9R6]","Similar to Cytochrome P450 CYP734A7. (Os07t0647200-00)",7,27019245,27023518,"GO:0010268;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021;GO:0016131","brassinosteroid homeostasis;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane;brassinosteroid metabolic process","Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways involving brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023]"]
["OS09T0481600-01",0.296663484182599,0.5169829920390421,0.0958239015671202,"OS09G0481600",null,152.888087913923,159.546190828621,168.796976547225,165.093894513386,"no","OS09G0481600","Os09g0481600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPI5]","Similar to tir-nbs resistance protein. (Os09t0481600-01)",9,18493032,18494879,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS12T0101000-02",0.29709547590492,0.517196396133572,0.13509209461770302,"OS12G0101000",null,146.937478262492,153.744704311333,175.45970875845,154.738312718767,"no","OS12G0101000","Os11g0101200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XXP9]","Similar to RNase P subunit p30 family protein, expressed. (Os12t0101000-01);Similar to RNase P subunit p30 family protein, expressed. (Os12t0101000-02);Similar to CCT motif family protein. (Os12t0101000-03)",12,37034,43021,"GO:0009909;GO:0009416;GO:0005634;GO:0004540;GO:0090501;GO:0008033;GO:0003824;","regulation of flower development;response to light stimulus;nucleus;ribonuclease activity;RNA phosphodiester bond hydrolysis;tRNA processing;catalytic activity;","Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA. [GOC:mah, ISBN:0198547684];The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];"]
["OS02T0121600-01",0.298017273237352,0.5178016226084841,0.0450299367881345,"OS02G0121600",null,275.080422586458,249.788390845831,256.610432554452,284.89913013541,"no","OS02G0121600","Os02g0121600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VEA6]","Similar to Zinc finger A20 domain-containing stress-associated protein 18. (Os02t0121600-01)",2,1137171,1139241]
["OS07T0406800-01",0.298544697915941,0.518187570203831,-0.0372170203095644,"OS07G0406800",null,251.762192674255,253.764101255643,242.285460008728,250.366607810282,"no","OS07G0406800","DNA primase large subunit [Source:UniProtKB/TrEMBL;Acc:Q69PX2]","DNA primase, large subunit, eukaryotic domain containing protein. (Os07t0406800-01);Similar to predicted protein. (Os07t0406800-02)",7,12574580,12579665,"GO:0003887;GO:0005658;GO:0006269;GO:0003896;GO:0071897;GO:0003899;GO:0016779;GO:0051539;GO:0051536;GO:0006260;GO:0046872;GO:0003677;GO:0003697;GO:0016740;GO:0009506","DNA-directed DNA polymerase activity;alpha DNA polymerase:primase complex;DNA replication, synthesis of RNA primer;DNA primase activity;DNA biosynthetic process;DNA-directed 5'-3' RNA polymerase activity;nucleotidyltransferase activity;4 iron, 4 sulfur cluster binding;iron-sulfur cluster binding;DNA replication;metal ion binding;DNA binding;single-stranded DNA binding;transferase activity;plasmodesma","Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. [EC:2.7.7.7, GOC:vw, ISBN:0198547684];A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis. [GOC:mah, PMID:11395402];The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis. [PMID:11395402];Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. [GOC:mah, GOC:mcc, ISBN:0716720094, PMID:26184436];The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:mah];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with single-stranded DNA. [GOC:elh, GOC:vw, PMID:22976174];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS04T0458300-01",0.299011651749922,0.518350203374013,0.0402429516684392,"OS04G0458300",null,304.258246767403,334.054275962302,319.758336186367,336.610118130659,"no","OS04G0458300","Aldose 1-epimerase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WB27]","Similar to OSIGBa0097P08.2 protein. (Os04t0458300-01);Similar to OSIGBa0097P08.2 protein. (Os04t0458300-02)",4,22893849,22898645,"GO:0019318;GO:0004034;GO:0016853;GO:0005975;GO:0030246;GO:0033499;GO:0006006;GO:0003824","hexose metabolic process;aldose 1-epimerase activity;isomerase activity;carbohydrate metabolic process;carbohydrate binding;galactose catabolic process via UDP-galactose;glucose metabolic process;catalytic activity","The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:0198506732];Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose. [EC:5.1.3.3];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose. [GOC:mah, MetaCyc:PWY-3821];The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0246200-03",0.29919630632155203,0.518556216118935,-0.7936756937656111,"OS07G0246200",null,67.1131265151417,84.8966099307496,73.107360786979,14.5828704655377,"no","OS07G0246200","cDNA clone:001-028-H03, full insert sequence [Source:UniProtKB/TrEMBL;Acc:B7EW55]","Similar to Calreticulin (Fragment). (Os07t0246200-01);Similar to Calreticulin (Fragment). (Os07t0246200-02);Similar to calreticulin2. (Os07t0246200-03)",7,8136965,8141055,"GO:0005783;GO:0006457;GO:0051082;GO:0005509;GO:0005788;GO:0030246;GO:0046872;GO:0007275","endoplasmic reticulum;protein folding;unfolded protein binding;calcium ion binding;endoplasmic reticulum lumen;carbohydrate binding;metal ion binding;multicellular organism development","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The volume enclosed by the membranes of the endoplasmic reticulum. [ISBN:0198547684];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS06T0296700-01",0.29972092607799905,0.51876281987269,-0.06473852281849529,"OS06G0296700",null,280.294827842192,243.951272428278,240.412627083444,260.828815592154,"no","OS06G0296700","Embryogenesis transmembrane protein-like [Source:UniProtKB/TrEMBL;Acc:Q5Z6J6]","C-type lectin, conserved site domain containing protein. (Os06t0296700-01)",6,10957733,10960700,"GO:0007165;GO:0016020;GO:0016021","signal transduction;membrane;integral component of membrane","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0565700-01",0.30036698875127305,0.519226674229314,-0.0114125164893527,"OS08G0565700",null,268.063780809079,236.745960584405,256.610432554452,244.221737445837,"no","OS08G0565700","Os08g0565700 protein [Source:UniProtKB/TrEMBL;Acc:Q84Z97]","SET domain containing protein. (Os08t0565700-01)",8,28341020,28343112,"GO:0016571;GO:0034968;GO:0018024;GO:0042393;GO:0005694;GO:0032259;GO:0008168;GO:0005634;GO:0008270;GO:0016740","histone methylation;histone lysine methylation;histone-lysine N-methyltransferase activity;histone binding;chromosome;methylation;methyltransferase activity;nucleus;zinc ion binding;transferase activity","The modification of histones by addition of methyl groups. [GOC:ai];The modification of a histone by addition of one or more methyl groups to a lysine residue. [GOC:mah, GOC:pr];Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. [EC:2.1.1.43, RESID:AA0074, RESID:AA0075, RESID:AA0076];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0592300-01",0.30127359734775705,0.5196551599405761,0.27244570862093703,"OS11G0592300",null,167.157642785889,226.4526579503,264.416073088428,211.007581153203,"no","OS11G0592300","NA","Glycosyl transferase, family 8 protein. (Os11t0592300-01)","NA","NA","NA","NA","NA","NA"]
["OS02T0178800-02",0.301397820203755,0.519656106256497,-0.760262239274028,"OS02G0178800",null,33.6046939098029,28.3086760807758,19.3632600308857,17.1897129178313,"no","OS02G0178800","Os02g0178800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETL8]","Glossy1(GL1) homolog, Cuticular wax biosynthesis, Drought resistance (Os02t0178800-01)",2,4355073,4362388,"GO:0016491;GO:0005789;GO:0008610;GO:0005506;GO:0055114;GO:0006629;GO:0016020;GO:0016021;GO:0010025;GO:0043447;GO:0046184","oxidoreductase activity;endoplasmic reticulum membrane;lipid biosynthetic process;iron ion binding;oxidation-reduction process;lipid metabolic process;membrane;integral component of membrane;wax biosynthetic process;alkane biosynthetic process;aldehyde biosynthetic process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:0943088399];The chemical reactions and pathways resulting in the formation of an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2. [CHEBI:18310, GOC:jl, Wikipedia:Alkane];The chemical reactions and pathways resulting in the formation of aldehydes, any organic compound with the formula R-CH=O. [GOC:ai]"]
["OS10T0516100-01",0.301523590413282,0.5197317275807131,-1.07011015377051,"OS10G0516100","GDCSH",22.1443385782175,22.3632575036847,21.1981950117903,0,"no","OS10G0516100","Glycine cleavage system H protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:A3C6G9]","H subunit of glycine decarboxylase complex (GDC), Photorespiration (Os10t0516100-01);Similar to Glycine cleavage system H protein, mitochondrial precursor. (Os10t0516100-02)",10,19894753,19896794,"GO:0005960;GO:0019464;GO:0005737;GO:0005739","glycine cleavage complex;glycine decarboxylation via glycine cleavage system;cytoplasm;mitochondrion","A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T. [GOC:mah, MetaCyc:GCVMULTI-CPLX];The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732]"]
["OS11T0649700-01",0.301884933010301,0.5199615472725371,0.30888602142020305,"OS11G0649700",null,54.0204577295862,45.2905315900601,54.6394837378301,68.3820864848344,"no","OS11G0649700","CASP-like protein 1U2 [Source:UniProtKB/Swiss-Prot;Acc:Q2R0D1]","Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os11t0649700-01)",11,25895922,25897219,"GO:0005886;GO:0016020;GO:0016021","plasma membrane;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0556400-01",0.302843482943751,0.520650165488575,0.253045386569669,"OS09G0556400",null,231.370639709737,283.065822437875,347.35100376192,265.713250341071,"no","OS09G0556400","Os09g0556400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XR24]","Similar to PHT4;5; inorganic phosphate transmembrane transporter. (Os09t0556400-01)",9,22107352,22111209,"GO:0031969;GO:0098656;GO:0009536;GO:0016021;GO:0009507;GO:0006810;GO:0055085;GO:0006811;GO:0005315;GO:0016020","chloroplast membrane;anion transmembrane transport;plastid;integral component of membrane;chloroplast;transport;transmembrane transport;ion transport;inorganic phosphate transmembrane transporter activity;membrane","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];A process in which an anion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0318700-02",0.303195154120809,0.520792996707375,-0.139640043261922,"OS06G0318700","MKRN",232.034466236404,214.131569308696,199.081080294552,205.924180836357,"no","OS06G0318700","E3 ubiquitin-protein ligase makorin [Source:UniProtKB/Swiss-Prot;Acc:Q5ZA07]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0318700-01);Non-protein coding transcript. (Os06t0318700-02)",6,12352403,12358103,"GO:0046872;GO:0016567;GO:0003677;GO:0016740","metal ion binding;protein ubiquitination;DNA binding;transferase activity","Interacting selectively and non-covalently with any metal ion. [GOC:ai];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0820700-03",0.303728794274367,0.5208240513369511,-0.20191677740548103,"OS02G0820700",null,729.965794141492,668.803384887184,567.446926458992,648.635598464583,"no","OS02G0820700","Os02g0820700 protein [Source:UniProtKB/TrEMBL;Acc:Q6K710]","Similar to BS14b. (Os02t0820700-01);Similar to BS14b. (Os02t0820700-02);Similar to BS14b. (Os02t0820700-03)",2,35234126,35238024,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0379400-01",0.304325664137505,0.521233192663361,0.252015798794926,"OS01G0379400",null,122.861699491644,89.8920421058372,119.897337478295,133.464687455605,"no","OS01G0379400","Os01g0379400 protein [Source:UniProtKB/TrEMBL;Acc:Q5VNR1]","Cyclin-like F-box domain containing protein. (Os01t0379400-01);Hypothetical conserved gene. (Os01t0379400-02);Cyclin-like F-box domain containing protein. (Os01t0379400-03)",1,15777377,15780996,"GO:0031146;GO:0004842;GO:0016567;","SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;ubiquitin-protein transferase activity;protein ubiquitination;","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];"]
["OS01T0856000-02",0.304585224974586,0.52142399252063,-0.0807210417529528,"OS01G0856000","CDC6",243.258400962446,279.317935913104,236.571174144498,257.56913820185,"no","OS01G0856000","Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5N897]","Similar to CDC6 protein. (Os01t0856000-01);Similar to predicted protein. (Os01t0856000-02)",1,36952073,36956727,"GO:0009744;GO:0006270;GO:0051301;GO:0007049;GO:0009452;GO:0001510;GO:0006260;GO:0003682;GO:0008168;GO:0046872;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0005524;GO:0000166","response to sucrose;DNA replication initiation;cell division;cell cycle;7-methylguanosine RNA capping;RNA methylation;DNA replication;chromatin binding;methyltransferase activity;metal ion binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;ATP binding;nucleotide binding","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl];The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:0815316194];The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent transcript. [GOC:vw, PMID:9266685];Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS03T0168200-01",0.30531310256353,0.521988019559091,0.161637019925635,"OS03G0168200",null,126.371792591429,128.714922293831,155.423285324824,129.905397936877,"no","OS03G0168200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S7U4]","Similar to F16A14.21. (Os03t0168200-01)",3,3681100,3683235]
["OS07T0184900-04",0.306281291411423,0.5229994419406321,-0.9258983480147631,"OS07G0184900","KU70",23.7281498151505,19.6097122709938,1.7527324493269099,21.0582666573767,"no","OS07G0184900","ATP-dependent DNA helicase 2 subunit KU70 [Source:UniProtKB/Swiss-Prot;Acc:Q7F1M0]","ATP-dependent DNA helicase 2 subunit KU70, Maintenance of chromosomal stability, Developmental growth, Telomere length regulation (Os07t0184900-01);Hypothetical conserved gene. (Os07t0184900-02);Similar to Ku70 homolog. (Os07t0184900-03);Hypothetical conserved gene. (Os07t0184900-04)",7,4485257,4498866,"GO:0043564;GO:0006303;GO:0042162;GO:0000723;GO:0003684;GO:0005634;GO:0003677;GO:0000784;GO:0005515;GO:0032508;GO:0004003;GO:0006974;GO:0006310;GO:0006281;GO:0004386;GO:0016787;GO:0005524;GO:0000166;GO:0003690;GO:0009408","Ku70:Ku80 complex;double-strand break repair via nonhomologous end joining;telomeric DNA binding;telomere maintenance;damaged DNA binding;nucleus;DNA binding;nuclear chromosome, telomeric region;protein binding;DNA duplex unwinding;ATP-dependent DNA helicase activity;cellular response to DNA damage stimulus;DNA recombination;DNA repair;helicase activity;hydrolase activity;ATP binding;nucleotide binding;double-stranded DNA binding;response to heat","Heterodimeric protein complex composed of a 70 kDa and a 80 kDa subunit, binds DNA through a channel formed by the heterodimer. Functions in DNA double stranded break repair, chromosome maintenance, transcription regulation, V(D)J recombination, and activation of DNA-PK. [PMID:12518983];The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear. [GOC:rph, PMID:10827453, PMID:24837021];Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end. [GOC:jl, SO:0000624];Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Interacting selectively and non-covalently with damaged DNA. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins. [GOC:elh];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix. [EC:3.6.1.3, GOC:jl];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with double-stranded DNA. [GOC:elh, GOC:vw];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]"]
["OS08T0459100-01",0.30706138945725703,0.5236402230186881,-0.0308300684015192,"OS08G0459100",null,206.908545643509,209.983373735733,215.63081975108,192.44672910732,"no","OS08G0459100","Os08g0459100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZBZ9]","Leucine-rich repeat, cysteine-containing containing protein. (Os08t0459100-01)",8,22522367,22528882]
["OS11T0578100-00",0.30790298402376,0.524303420348564,0.0853934780602916,"OS11G0578100",null,306.795429747272,333.503005344988,370.899206514368,308.442751649092,"no","OS11G0578100","NA","Heat shock protein DnaJ, N-terminal domain containing protein. (Os11t0578100-00)","NA","NA","NA","NA","NA","NA"]
["OS01T0351300-01",0.308755568076294,0.525036296138772,-0.0258864304499263,"OS01G0351300",null,1069.19736147804,1224.90301345844,1115.23089129178,1138.0732964976,"no","OS01G0351300","Exocyst complex component SEC15B [Source:Projected from Arabidopsis thaliana (AT4G02350) UniProtKB/Swiss-Prot;Acc:F4JHH5]","Exocyst complex subunit Sec15-like family protein. (Os01t0351300-01)",1,14059603,14064199,"GO:0006904;GO:0000145;GO:0006810;GO:0006471;GO:0016757;GO:0003950;GO:0006887;GO:0016740;GO:0009846;GO:0009860;GO:0060321;GO:0005829;GO:0005886;GO:0009506;GO:0016020;GO:0070062","vesicle docking involved in exocytosis;exocyst;transport;protein ADP-ribosylation;transferase activity, transferring glycosyl groups;NAD+ ADP-ribosyltransferase activity;exocytosis;transferase activity;pollen germination;pollen tube growth;acceptance of pollen;cytosol;plasma membrane;plasmodesma;membrane;extracellular exosome","The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. [GOC:jid];A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. [GOC:cilia, PMID:15292201, PMID:27243008, PMID:9700152];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. [EC:2.4.2.30];A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. [GOC:mah, ISBN:0716731363, PMID:22323285];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The physiological and developmental changes that occur in a heterosporous plant pollen grain, beginning with hydration and terminating with the emergence of the pollen tube through the aperture. [GOC:lr, http://www.bio.uu.nl, ISBN:0943088399];Growth of pollen via tip extension of the intine wall. [ISBN:00943088399];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the acceptance of pollen by cells in the stigma. [GOC:dph, GOC:tb];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. [GOC:BHF, GOC:mah, GOC:vesicles, PMID:15908444, PMID:17641064, PMID:19442504, PMID:19498381, PMID:22418571, PMID:24009894]"]
["OS01T0823100-01",0.30876229768929,0.525036296138772,-0.278171648952855,"OS01G0823100","EXPA2",608.65323684091,766.599487356229,477.901336943599,656.180783683354,"no","OS01G0823100","Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q40636]","Alpha-expansin OsEXPA2. (Os01t0823100-01)",1,35145517,35147323,"GO:0005618;GO:0005576;GO:0009664;GO:0016020;GO:0071555","cell wall;extracellular region;plant-type cell wall organization;membrane;cell wall organization","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS01T0924000-02",0.30950717010362905,0.525685425537417,0.271992200714608,"OS01G0924000","RPL27",72.4967980332742,84.6543386183371,92.3984850343568,97.3574365692247,"no","OS01G0924000","50S ribosomal protein L27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65037]","Similar to Chloroplast 50S ribosomal protein L27 (Fragment). (Os01t0924000-01);Similar to 50S ribosomal protein L27, chloroplastic. (Os01t0924000-02)",1,40453863,40455608,"GO:0005840;GO:0005622;GO:0006412;GO:0003735;GO:0016020;GO:0016021;GO:0009536;GO:0009507;GO:0030529;GO:0009735;GO:0009570;GO:0009579;GO:0009941","ribosome;intracellular;translation;structural constituent of ribosome;membrane;integral component of membrane;plastid;chloroplast;intracellular ribonucleoprotein complex;response to cytokinin;chloroplast stroma;thylakoid;chloroplast envelope","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS03T0689866-00",0.310537652481847,0.526676271712302,0.130076001269208,"OS03G0689866",null,136.580025203105,153.370209248158,149.282875212286,168.024555362736,"no","OS03G0689866","Os03g0689866 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1M4]","Conserved hypothetical protein. (Os03t0689866-00)",3,27542551,27543081,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS03T0196500-00",0.31160257203892705,0.5272283378864311,1.34354655824075,"OS03G0196500",null,2.03850783885231,4.11732105364182,6.82993546722877,8.79198254805014,"no","OS03G0196500","F-box protein SNE [Source:Projected from Arabidopsis thaliana (AT5G48170) UniProtKB/Swiss-Prot;Acc:Q9LUB6]","Cyclin-like F-box domain containing protein. (Os03t0196500-00)",3,5049125,5049901,"GO:0000151;GO:0043161;GO:0009740;GO:0009937;GO:0048831;GO:0019005","ubiquitin ligase complex;proteasome-mediated ubiquitin-dependent protein catabolic process;gibberellic acid mediated signaling pathway;regulation of gibberellic acid mediated signaling pathway;regulation of shoot system development;SCF ubiquitin ligase complex","A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex. [GOC:jh2, PMID:9529603];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm];Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling. [GOC:go_curators];Any process that modulates the frequency, rate or extent of shoot development. [GOC:tb, PMID:16361392];A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). [PMID:15571813, PMID:15688063]"]
["OS11T0307500-01",0.311657560141458,0.5272283378864311,-0.19961210730755302,"OS11G0307500",null,221.178100515475,166.751502672494,164.894156280237,172.908990111653,"no","OS11G0307500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R6G1]","Conserved hypothetical protein. (Os11t0307500-01)",11,11661330,11662253]
["OS04T0156000-00",0.31196206940943905,0.527598402690129,-1.1006788477059,"OS04G0156000",null,49.7236030117514,42.9297682403539,16.702747752787,26.5012442754991,"no","OS04G0156000","OSJNBa0080E14.6 protein [Source:UniProtKB/TrEMBL;Acc:Q7X717]","Similar to OSIGBa0147M20.4 protein. (Os04t0156000-00)",4,3847603,3849653,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0308850-00",0.31271194901088,0.528041910485881,0.25181593424534104,"OS03G0308850",null,67.2707586821262,84.4050815996574,101.473326941685,79.1278429324513,"no","OS03G0308850","Os03g0308850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWK8]","Similar to Fip1 motif family protein, expressed. (Os03t0308850-00)",3,10998989,10999602]
["OS04T0675200-01",0.313226174631609,0.5283908170363271,0.101709641398636,"OS04G0675200",null,129.445247767122,138.959585560412,141.47723467831,146.533042467502,"no","OS04G0675200",null,"Similar to H0103C06.6 protein. (Os04t0675200-01)",4,34479121,34485639]
["OS02T0592600-02",0.313862006503112,0.5288793791121871,-0.16370056561881802,"OS02G0592600",null,241.444908977979,226.56725735625201,236.659725653918,181.149824269922,"no","OS02G0592600","Os02g0592600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VL38]","Phospholipase C, phosphatidylinositol-specific, Y domain domain containing protein. (Os02t0592600-01);Phospholipase C, phosphatidylinositol-specific, Y domain domain containing protein. (Os02t0592600-02)",2,22934104,22939899,"GO:0005622;GO:0035556;GO:0007165;GO:0006629;GO:0004435","intracellular;intracellular signal transduction;signal transduction;lipid metabolic process;phosphatidylinositol phospholipase C activity","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+). [EC:3.1.4.11, RHEA:23915]"]
["OS01T0757700-01",0.314644689541904,0.52946819535604,-0.10202691721668701,"OS01G0757700",null,224.235862273754,234.687300057584,237.096331219513,190.492955207753,"no","OS01G0757700","Pentatricopeptide repeat-containing protein At4g21190 [Source:Projected from Arabidopsis thaliana (AT4G21190) UniProtKB/Swiss-Prot;Acc:Q8LG95]","Similar to EMB1417. (Os01t0757700-01)",1,31826639,31830179,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0732250-00",0.315359797848766,0.5299051481289461,0.0248390505395944,"OS02G0732250",null,362.749300394395,392.254009610415,379.887813475455,388.227024974538,"no","OS02G0732250","Os02g0732250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VP22]","Hypothetical protein. (Os02t0732250-00)",2,30520916,30522141]
["OS02T0624400-01",0.31596516847083,0.530333219890435,0.20211310014264602,"OS02G0624400",null,148.491383360929,123.915129595457,161.523554182536,151.848015182451,"no","OS02G0624400","Os02g0624400 protein [Source:UniProtKB/TrEMBL;Acc:Q6K1S5]","Glycosyl transferase, family 8 protein. (Os02t0624400-01);Similar to predicted protein. (Os02t0624400-02)",2,24899523,24904962,"GO:0016020;GO:0016021;GO:0016757;GO:0016740","membrane;integral component of membrane;transferase activity, transferring glycosyl groups;transferase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0266900-01",0.31619248870973604,0.530378440488627,0.18075533935582702,"OS02G0266900",null,108.040915459172,92.639723706941,121.963133343371,105.503790576602,"no","OS02G0266900","Os02g0266900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VHD3]","Conserved hypothetical protein. (Os02t0266900-01)",2,9541034,9542540]
["OS04T0371200-00",0.31658789898195605,0.530592213989326,-0.998050370034223,"OS04G0371200",null,12.1843534848801,9.2639723706941,5.8542304004818,4.88443474891674,"no","OS04G0371200","Os04g0371200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9R0]","Similar to OSIGBa0134J07.8 protein. (Os04t0371200-00)",4,18071437,18072738,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0711800-03",0.317404817615338,0.531266932914448,0.224045270452868,"OS03G0711800",null,451.581608235975,530.817446706887,624.335041701793,523.111028215091,"no","OS03G0711800","Os03g0711800 protein [Source:UniProtKB/TrEMBL;Acc:Q10E10]","Similar to IRE homolog 1 (Fragment). (Os03t0711800-01);Similar to predicted protein. (Os03t0711800-02);Similar to predicted protein. (Os03t0711800-03)",3,28750215,28762250,"GO:0016310;GO:0016301;GO:0004674;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740;GO:0005622;GO:0035556;GO:0018105","phosphorylation;kinase activity;protein serine/threonine kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity;intracellular;intracellular signal transduction;peptidyl-serine phosphorylation","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037]"]
["OS01T0861900-01",0.318245752977919,0.53195339998804,-0.16649696143321602,"OS01G0861900",null,298.641398391863,331.444344818167,248.804792020477,312.603823930672,"no","OS01G0861900","Os01g0861900 protein [Source:UniProtKB/TrEMBL;Acc:Q94CW7]","Similar to transposon protein Mutator sub-class. (Os01t0861900-01)",1,37308289,37310312]
["OS07T0570100-01",0.319002406159758,0.53260623602344,-0.185560106351182,"OS07G0570100",null,2562.5429653294,2981.03688601838,2174.78969897623,2699.72236541634,"no","OS07G0570100","Os07g0570100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X879]","Similar to predicted protein. (Os07t0570100-01)",7,22939113,22954778,"GO:0046872;GO:0004222;GO:0006508;GO:0003824","metal ion binding;metalloendopeptidase activity;proteolysis;catalytic activity","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS03T0302500-01",0.319279747352816,0.532836338074138,3.8565861393608904E-3,"OS03G0302500",null,258.100919102907,295.622200693671,267.343188288669,287.862114268387,"no","OS03G0302500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10MM9]","Protein of unknown function DUF3511 domain containing protein. (Os03t0302500-01)",3,10662390,10663454]
["OS12T0626200-01",0.319744028006178,0.533026535372784,-0.9939895456748961,"OS12G0626200",null,10.1925391942615,9.2639723706941,0,9.76886949783349,"no","OS12G0626200","Auxin responsive protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLW2]","Auxin responsive SAUR protein family protein. (Os12t0626200-01)",12,26768220,26768893,"GO:0009733","response to auxin","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]"]
["OS01T0114100-01",0.320525556984387,0.533310455277322,-3.4981273901833402E-3,"OS01G0114100",null,201.812276046379,217.843862982084,218.816915169956,199.822909062127,"no","OS01G0114100","Os01g0114100 protein [Source:UniProtKB/TrEMBL;Acc:Q656W0]","Similar to Protein kinase RLK17. (Os01t0114100-01)",1,767181,769673,"GO:0030247;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0262300-01",0.320833624709745,0.5334195613791041,0.026795780360337598,"OS03G0262300",null,348.584840443745,392.174830359384,401.99048749975,352.656188871789,"no","OS03G0262300","AT hook motif family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NR0]","Hypothetical conserved gene. (Os03t0262300-01)",3,8581503,8596767,"GO:0006281;GO:0003682;GO:0005634;GO:0003689;GO:0007049;GO:0005524;GO:0000790;GO:0033314;GO:0000077","DNA repair;chromatin binding;nucleus;DNA clamp loader activity;cell cycle;ATP binding;nuclear chromatin;mitotic DNA replication checkpoint;DNA damage checkpoint","The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex. [GOC:mah, GOC:vw, PMID:16082778];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus. [GOC:elh, PMID:20404130];A cell cycle checkpoint that acts during a mitotic cell cycle and prevents the initiation of mitosis until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome. [GOC:mtg_cell_cycle];A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds. [GOC:mtg_cell_cycle]"]
["OS07T0535800-01",0.32144722487022,0.5338113906410821,-0.35234845683677,"OS07G0535800",null,113.211157889231,80.4433536466348,62.4451242718059,89.2459980905392,"no","OS07G0535800","Os07g0535800 protein [Source:UniProtKB/TrEMBL;Acc:Q69W20]","Similar to SRK15 protein (Fragment). (Os07t0535800-01)",7,21045118,21049397,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0807800-01",0.32203499630216,0.53413752481127,0.25859535179792903,"OS01G0807800",null,174.292420221872,194.543419784576,255.634727487705,185.608520458836,"no","OS01G0807800","Os01g0807800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9F9]","Conserved hypothetical protein. (Os01t0807800-01)",1,34293077,34295574]
["OS04T0529400-01",0.32245540278941404,0.534716893230624,1.11416332189134E-3,"OS04G0529400",null,202.831529965805,188.367438204113,190.262488015659,201.23871165537,"no","OS04G0529400","Os04g0529400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCX9]","Similar to OO_Ba0013J05-OO_Ba0033A15.30 protein. (Os04t0529400-01)",4,26475471,26480129]
["OS12T0124500-01",0.32301855543276303,0.535013710592094,-0.659945750109259,"OS12G0124500","MIF2",29.95781941873,31.2325474360338,18.6586051942147,20.0689062221065,"no","OS12G0124500","Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:B9GBM3]","ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein. (Os12t0124500-01)",12,1180372,1181071,"GO:0005737;GO:0046872","cytoplasm;metal ion binding","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS04T0332700-01",0.32375399638318103,0.535506041768121,-1.03932288642053,"OS04G0332700",null,28.9897659127381,9.2639723706941,8.7813456007227,9.83123186416547,"no","OS04G0332700","B1159F04.1 protein [Source:UniProtKB/TrEMBL;Acc:Q7XK87]","Conserved hypothetical protein. (Os04t0332700-01)",4,15499548,15500598]
["OS03T0165000-00",0.324649949682063,0.536313356222851,-0.388645041061479,"OS03G0165000",null,34.8872873449414,44.1240194139298,34.8173499772403,25.5351729325256,"no","OS03G0165000","DNA topoisomerase [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTL7]","Similar to DNA topoisomerase family protein, expressed. (Os03t0165000-00)",3,3489726,3496319,"GO:0005634;GO:0003917;GO:0003916;GO:0006265;GO:0005694;GO:0016853;GO:0046872;GO:0003677;GO:0003676;GO:0008270","nucleus;DNA topoisomerase type I activity;DNA topoisomerase activity;DNA topological change;chromosome;isomerase activity;metal ion binding;DNA binding;nucleic acid binding;zinc ion binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle. [PMID:8811192];Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA. [GOC:mah, PMID:8811192];The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. [ISBN:071673706X, ISBN:0935702490];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0229900-02",0.325694727213433,0.537314774166283,0.30679788180231604,"OS01G0229900",null,65.4324518131563,91.4055168697762,87.7718421671888,106.230321628863,"no","OS01G0229900","Os01g0229900 protein [Source:UniProtKB/TrEMBL;Acc:B7EAV1]","Similar to Ubiquitin-conjugating enzyme family protein, expressed. (Os01t0229900-01);Similar to Shaggy-related protein kinase dzeta (EC 2.7.1.-) (ASK-dzeta). (Os01t0229900-02);Hypothetical conserved gene. (Os01t0229900-03)",1,7197022,7209085,"GO:0031625;GO:0061630;GO:0005737;GO:0016567","ubiquitin protein ligase binding;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination","Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS08T0552333-00",0.32579793452848405,0.537403007003252,-0.18072767577221702,"OS08G0552333",null,128.704118563938,167.393977589551,134.103936816683,127.130943295244,"no","OS08G0552333","Os08g0552333 protein [Source:UniProtKB/TrEMBL;Acc:A3BVK3]","Protein of unknown function DUF241, plant domain containing protein. (Os08t0552333-00)",8,27658643,27660092]
["OS05T0435400-01",0.32650323073845505,0.537956463653199,-0.484274140801123,"OS05G0435400",null,24.4620940662277,24.7039263218509,17.5626912014454,17.5839650961003,"no","OS05G0435400","Os05g0435400 protein [Source:UniProtKB/TrEMBL;Acc:Q6I5L2]","Conserved hypothetical protein. (Os05t0435400-01)",5,21313246,21314060]
["OS02T0135300-00",0.32738372210244204,0.5386809283538241,-0.0650954337896518,"OS02G0135300","WEE1",167.157642785889,174.986144779778,171.724091747466,155.325025015552,"no","OS02G0135300","Wee1-like protein kinase [Source:UniProtKB/Swiss-Prot;Acc:Q6Z829]","Similar to Wee1-like protein kinase. (Os02t0135300-00)",2,1860177,1864482,"GO:0018108;GO:0016310;GO:0016301;GO:0046872;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016740;GO:0004713;GO:0004715","peptidyl-tyrosine phosphorylation;phosphorylation;kinase activity;metal ion binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity;protein tyrosine kinase activity;non-membrane spanning protein tyrosine kinase activity","The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];Catalysis of the reaction: ATP + protein L-tyrosine = ADP + protein L-tyrosine phosphate by a non-membrane spanning protein. [EC:2.7.10.2]"]
["OS02T0525900-02",0.328194613551125,0.5391440925483381,-0.00821345711750589,"OS02G0525900",null,1455.43045456341,1600.24363133551,1436.36815618086,1601.95899180028,"no","OS02G0525900","Acetyl-coenzyme A synthetase [Source:UniProtKB/TrEMBL;Acc:Q6H798]","Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2). (Os02t0525900-01);Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2). (Os02t0525900-02);Similar to H0502B11.5 protein. (Os02t0525900-03)",2,19219047,19224966,"GO:0008152;GO:0003824;GO:0019427;GO:0016208;GO:0003987;GO:0016874;GO:0005524;GO:0000166","metabolic process;catalytic activity;acetyl-CoA biosynthetic process from acetate;AMP binding;acetate-CoA ligase activity;ligase activity;ATP binding;nucleotide binding","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of acetyl-CoA from acetate, either directly or via acetylphosphate. [MetaCyc:ACETATEUTIL-PWY];Interacting selectively and non-covalently with AMP, adenosine monophosphate. [GOC:go_curators];Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA. [EC:6.2.1.1];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS10T0578500-00",0.32840653825612803,0.5392312869780841,0.547869906379969,"OS10G0578500",null,16.3080627108185,14.4106236877464,23.4169216019272,21.4915128952337,"no","OS10G0578500","Os10g0578500 protein [Source:UniProtKB/TrEMBL;Acc:Q7XBT9]","Hypothetical conserved gene. (Os10t0578500-00)",10,23069756,23071651,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0009058;GO:0090305;GO:0003824","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;biosynthetic process;nucleic acid phosphodiester bond hydrolysis;catalytic activity","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0230400-01",0.32979103521048103,0.540694531476096,-0.21038037730045,"OS07G0230400",null,566.339042276401,465.78493276416,395.254545590714,496.819825091428,"no","OS07G0230400","Os07g0230400 protein [Source:UniProtKB/TrEMBL;Acc:B9FWA0]","Conserved hypothetical protein. (Os07t0230400-01)",7,7256141,7257814]
["OS01T0850200-00",0.33063489126439305,0.54139011560895,-0.18481077375190502,"OS01G0850200",null,93.7713605872062,108.910769130259,81.6007263141868,96.7118080285515,"no","OS01G0850200","Os01g0850200 protein [Source:UniProtKB/TrEMBL;Acc:Q8S283]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0850200-00)",1,36597719,36600524,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0691650-00",0.330757367723276,0.541432656380279,0.472791337665582,"OS11G0691650",null,22.770433548464,13.4501981571988,22.5406585983897,27.7260437018456,"no","OS11G0691650","Os11g0691650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTD6]","Serine/threonine protein kinase domain containing protein. (Os11t0691650-00)",11,28222036,28222992,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0146500-02",0.33153165541407104,0.5418871782693511,0.31759330803858304,"OS03G0146500",null,95.7777605721865,120.689308421132,152.854428397112,116.917619576058,"no","OS03G0146500","(RAP Annotation release2) Galactose-binding like domain containing protein [Source:UniProtKB/TrEMBL;Acc:Q10RT4]","Similar to (RAP Annotation release2) Galactose-binding like domain containing protein. (Os03t0146500-01);Galactose-binding like domain containing protein. (Os03t0146500-02)",3,2581186,2583486,"GO:0009507;","chloroplast;","A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];"]
["OS05T0494200-01",0.33192988033264303,0.542048545647423,0.0158641199459229,"OS05G0494200",null,405.888947011915,360.188206768528,385.053360943972,389.494193092609,"no","OS05G0494200","Cysteine proteinase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:P20907]","Similar to Cystatin (Fragment). (Os05t0494200-01);Similar to Cysteine proteinase inhibitor-II (Oryzacystatin-II). (Os05t0494200-02)",5,24280518,24281730,"GO:0006952;GO:0010951;GO:0010466;GO:0030414;GO:0004869;GO:0002020;GO:2000117","defense response;negative regulation of endopeptidase activity;negative regulation of peptidase activity;peptidase inhibitor activity;cysteine-type endopeptidase inhibitor activity;protease binding;negative regulation of cysteine-type endopeptidase activity","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. [GOC:jl];Stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any protease or peptidase. [GOC:hjd];Any process that stops, prevents, or reduces the frequency, rate or extent of cysteine-type endopeptidase activity. [GOC:obol, GOC:yaf]"]
["OS10T0535600-01",0.332812869784647,0.542753124091236,-0.30403514367316997,"OS10G0535600",null,47.9049342130293,54.5545039607542,37.0767925363847,45.9136866398174,"no","OS10G0535600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q336X2]","Similar to Hydrolase. (Os10t0535600-01)",10,20837435,20838911,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0801700-01",0.333510044738414,0.543117446551949,-0.0870985120436768,"OS03G0801700","RIBF",173.273166302446,150.282218457927,156.112810679515,148.486816367069,"no","OS03G0801700","FAD synthetase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10BX9]","Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os03t0801700-01)",3,33433385,33436696,"GO:0009231;GO:0016779;GO:0009536;GO:0009507;GO:0005524;GO:0000166;GO:0006747;GO:0003919;GO:0016740","riboflavin biosynthetic process;nucleotidyltransferase activity;plastid;chloroplast;ATP binding;nucleotide binding;FAD biosynthetic process;FMN adenylyltransferase activity;transferase activity","The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of FAD, the oxidized form of flavin-adenine dinucleotide. [CHEBI:16238, GOC:ai, ISBN:0198506732];Catalysis of the reaction: ATP + FMN = diphosphate + FAD. [EC:2.7.7.2, RHEA:17240];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0252700-01",0.33351094575677903,0.543117446551949,-0.31930535985249703,"OS09G0252700",null,43.8279185353246,46.3198618534705,33.1739722693969,39.075477991334,"no","OS09G0252700","Os09g0252700 protein [Source:UniProtKB/TrEMBL;Acc:Q0J365]","Similar to E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-) (Ubiquitin-protein ligase 1). (Os09t0252700-01)",9,4020411,4024072,"GO:0061630;GO:0005737;GO:0016567;GO:0004842;GO:0016874;GO:0016740","ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;ubiquitin-protein transferase activity;ligase activity;transferase activity","Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0158700-02",0.33434824292534304,0.543581274359609,-0.6628778050056611,"OS03G0158700",null,26.5198594556155,27.6612361885079,10.0379532843051,24.1837546337315,"no","OS03G0158700","Os03g0158700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTL0]","Similar to PA domain containing protein, expressed. (Os03t0158700-01);Similar to P69C protein. (Os03t0158700-02)",3,3151514,3165238,"GO:0004252;GO:0006508;GO:0008236;GO:0016787;GO:0008233","serine-type endopeptidase activity;proteolysis;serine-type peptidase activity;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS11T0572800-01",0.33476731984310504,0.543830018389245,0.0972760544546738,"OS11G0572800",null,160.022865349906,142.047576350643,172.699796814213,150.440590266636,"no","OS11G0572800","NA","Cyclin-like F-box domain containing protein. (Os11t0572800-01)","NA","NA","NA","NA","NA","NA"]
["OS10T0422566-01",0.33540996538494605,0.544176275411827,0.0459216073733197,"OS10G0422566",null,278.424684166391,251.156584272151,286.857289623608,259.851928642371,"no","OS10G0422566","Os10g0422566 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUQ6]","Similar to predicted protein. (Os10t0422566-01)",10,14956178,14959713,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS02T0125000-02",0.33644880522699705,0.545082407882587,-0.180504947981407,"OS02G0125000",null,105.498293422338,116.642512023281,106.73384293196,89.2818934770729,"no","OS02G0125000","Protein LOW PSII ACCUMULATION 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G51545) UniProtKB/Swiss-Prot;Acc:F4KDA6]","Similar to LPA2 (low psii accumulation2). (Os02t0125000-01);Non-protein coding transcript. (Os02t0125000-02)",2,1302273,1304317,"GO:0016020;GO:0016021;GO:0009507;GO:0009534","membrane;integral component of membrane;chloroplast;chloroplast thylakoid","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999]"]
["OS03T0155500-00",0.33726755720539703,0.545773220748903,0.24110594385240802,"OS03G0155500",null,55.3806878183306,53.4556991425739,61.6837364881281,66.9498081655787,"no","OS03G0155500","Os03g0155500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VT84]","Similar to Expansin-A25. (Os03t0155500-00)",3,3003413,3004537,"GO:0005618;GO:0005576;GO:0009664;GO:0016020;GO:0071555","cell wall;extracellular region;plant-type cell wall organization;membrane;cell wall organization","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS01T0258600-00",0.337406871769642,0.54594082969527,-0.0571775971955156,"OS01G0258600",null,315.298131683145,261.751604185181,287.582866764772,267.044218713694,"no","OS01G0258600","Os01g0258600 protein [Source:UniProtKB/TrEMBL;Acc:E3W9W9]","Similar to predicted protein. (Os01t0258600-00)",1,8657086,8658466,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0959800-01",0.338223217409411,0.546624827459391,0.0633103627486525,"OS01G0959800",null,1032.50422037869,1003.59700682519,986.437822481184,1141.00395734695,"no","OS01G0959800","Os01g0959800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VD86]","Similar to PSD2 (phosphatidylserine decarboxylase 2); phosphatidylserine decarboxylase. (Os01t0959800-01)",1,42303492,42308881,"GO:0005774;GO:0005773;GO:0008654;GO:0016831;GO:0004609;GO:0005789;GO:0005783;GO:0006629;GO:0005509;GO:0016829;GO:0006646;GO:0016020;GO:0016540","vacuolar membrane;vacuole;phospholipid biosynthetic process;carboxy-lyase activity;phosphatidylserine decarboxylase activity;endoplasmic reticulum membrane;endoplasmic reticulum;lipid metabolic process;calcium ion binding;lyase activity;phosphatidylethanolamine biosynthetic process;membrane;protein autoprocessing","The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];Catalysis of the reaction: H(+) + phosphatidyl-L-serine = CO(2) + phosphatidylethanolamine. [EC:4.1.1.65, RHEA:20831];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein. [GOC:ai, PMID:9335337]"]
["OS02T0197800-01",0.33892133065755303,0.5470512027840241,-0.11487132180824101,"OS02G0197800",null,157.55428474218,130.878644543505,132.363048122528,133.994572767801,"no","OS02G0197800","Os02g0197800 protein [Source:UniProtKB/TrEMBL;Acc:Q6H743]","Protein of unknown function DUF971 family protein. (Os02t0197800-01)",2,5478759,5480881]
["OS08T0307400-02",0.33984271893072304,0.547822231244207,0.0647955112286012,"OS08G0307400",null,666.614887281938,592.906490878978,697.9921644314,619.38744091607,"no","OS08G0307400","Os08g0307400 protein [Source:UniProtKB/TrEMBL;Acc:Q6UUD9]","Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-03)",8,12854498,12874470,"GO:0048015;GO:0046854;GO:0005622;GO:0016197;GO:0000407;GO:0000045;GO:0005777;GO:0005768;GO:0006468;GO:0036092;GO:0016301;GO:0016310;GO:0006897;GO:0016303;GO:0034272;GO:0034271;GO:0016740;GO:0030242","phosphatidylinositol-mediated signaling;phosphatidylinositol phosphorylation;intracellular;endosomal transport;pre-autophagosomal structure;autophagosome assembly;peroxisome;endosome;protein phosphorylation;phosphatidylinositol-3-phosphate biosynthetic process;kinase activity;phosphorylation;endocytosis;1-phosphatidylinositol-3-kinase activity;phosphatidylinositol 3-kinase complex, class III, type II;phosphatidylinositol 3-kinase complex, class III, type I;transferase activity;pexophagy","A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, GOC:ceb, ISBN:0198506732];The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of substances into, out of, or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. [ISBN:0198506732];A punctate structure localized in the vicinity of the vacuole that is required for the formation of autophagosomes. [GOC:elh, PMID:11689437, PMID:12048214, PMID:12554655];The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm. [GOC:autophagy, PMID:9412464];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];The process of introducing a phosphate group on to a protein. [GOC:hb];The chemical reactions and pathways resulting in the formation of phosphatidylinositol-3-phosphate, a phosphatidylinositol monophosphate carrying the phosphate group at the 3-position. [CHEBI:26034, GOC:al, GOC:vw];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. [GOC:mah, ISBN:0198506732, ISBN:0716731363];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + ATP = a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ADP + 2 H(+). [EC:2.7.1.137, RHEA:12712];A class III phosphatidylinositol 3-kinase complex that is involved in vacuolar protein sorting (VPS) via endosomes. In budding yeast, this complex consists of Vps30p, Vps34p, Vps38 and Vps15p. [GOC:ha, GOC:rb, PMID:11157979, PMID:16421251];A class III phosphatidylinositol 3-kinase complex that is involved in autophagy. In budding yeast, this complex consists of Vps30p, Vps34p, Apg14p and Vps15p. [GOC:ha, GOC:rb, PMID:11157979, PMID:16421251];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The process in which peroxisomes are delivered to the vacuole and degraded in response to changing nutrient conditions. [GOC:autophagy, PMID:10547367, PMID:20083110]"]
["OS10T0132700-01",0.34053930808605704,0.5484233698379251,-0.0781453439617411,"OS10G0132700",null,424.772073771376,408.016151052963,420.799800156426,368.079359746648,"no","OS10G0132700","Disease resistance protein RPM1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10A62]","Similar to NB-ARC domain containing protein, expressed. (Os10t0132700-01)",10,2044042,2057059,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS07T0582800-01",0.341844637953497,0.549691163187067,-0.22424064103839803,"OS07G0582800",null,1024.13586731091,842.773247208363,692.656674217597,905.502443320372,"no","OS07G0582800","Os07g0582800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZFM3]","Hypothetical protein. (Os07t0582800-01)",7,23596732,23598309]
["OS06T0154900-01",0.342152373546703,0.550065213460265,-0.678804083751219,"OS06G0154900",null,120.995713312413,125.878833864514,67.6630995392908,86.5552056267849,"no","OS06G0154900","Os06g0154900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT60]","Similar to RING-type E3 ubiquitin ligase. (Os06t0154900-01);Similar to F3F9.7. (Os06t0154900-02)",6,2832490,2836293]
["OS12T0631200-02",0.342898627017347,0.550627501978029,-0.17412656928053402,"OS12G0631200",null,808.549932817841,916.573948254215,677.671721598542,851.312370026153,"no","OS12G0631200","Os12g0631200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLR6]","Zinc finger, C6HC-type domain containing protein. (Os12t0631200-01);Similar to ubiquitin-protein ligase/ zinc ion binding protein. (Os12t0631200-02)",12,27025315,27029985,"GO:0000151;GO:0032436;GO:0031624;GO:0000209;GO:0042787;GO:0061630;GO:0005737;GO:0016567;GO:0004842;GO:0046872;GO:0003676;GO:0016740","ubiquitin ligase complex;positive regulation of proteasomal ubiquitin-dependent protein catabolic process;ubiquitin conjugating enzyme binding;protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;ubiquitin-protein transferase activity;metal ion binding;nucleic acid binding;transferase activity","A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex. [GOC:jh2, PMID:9529603];Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:mah];Interacting selectively and non-covalently with a ubiquitin conjugating enzyme, any of the E2 proteins. [GOC:vp];Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0117550-01",0.343809152131471,0.5514224383708131,0.165776617935556,"OS02G0117550",null,265.361032876289,195.458960886518,262.137233832055,254.796707352545,"no","OS02G0117550","Os02g0117550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VE76]","Hypothetical gene. (Os02t0117550-01)",2,923296,925069]
["OS01T0177900-02",0.34443396695133505,0.55173455696428,0.973099056156817,"OS01G0177900",null,20.0150553553916,12.4471550454884,31.0251008696409,32.699935634081,"no","OS01G0177900","Os01g0177900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYS6]","ATP-binding cassette transporter, Cuticle formation, Defense response (Os01t0177900-01);Similar to Pleiotropic drug resistance protein 6. (Os01t0177900-02)",1,4033754,4036223,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0238700-01",0.345352317527768,0.55250583888089,0.0847245050523978,"OS08G0238700",null,234.514044311317,237.718790370442,276.671836071893,224.124102350889,"no","OS08G0238700","Os08g0238700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDJ4]","Conserved hypothetical protein. (Os08t0238700-01)",8,8415405,8417869]
["OS07T0636400-01",0.34546957410189105,0.552577688495941,0.0832679155022589,"OS07G0636400",null,454.587248064065,428.20138957875,510.293749908664,424.945823155757,"no","OS07G0636400","Os07g0636400 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIX6]","Similar to ribonuclease P. (Os07t0636400-01)",7,26432701,26435257,"GO:0005655","nucleolar ribonuclease P complex","A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. [GOC:mah, PMID:12045094]"]
["OS03T0261900-02",0.346218286636712,0.5531792649157,0.00763797577075979,"OS03G0261900",null,290.271505732259,273.90801635869,296.396164719176,270.778180601489,"no","OS03G0261900","HEAT repeat family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10NR5]","Similar to HEAT repeat family protein, expressed. (Os03t0261900-01);Armadillo-like helical domain containing protein. (Os03t0261900-02)",3,8546948,8552114,"GO:0031965;GO:0006607;GO:0008565;GO:0008139;GO:0005737;GO:0008536;GO:0006886;GO:0005622;GO:0000060;GO:0006610;GO:0034399;","nuclear membrane;NLS-bearing protein import into nucleus;protein transporter activity;nuclear localization sequence binding;cytoplasm;Ran GTPase binding;intracellular protein transport;intracellular;protein import into nucleus, translocation;ribosomal protein import into nucleus;nuclear periphery;","Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. [GOC:mah, GOC:pz];The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane. [GOC:ai];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope. [GOC:curators, ISBN:0198506732, PMID:14570049, PMID:9126736];The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane. [GOC:ai];The portion of the nuclear lumen proximal to the inner nuclear membrane. [GOC:krc, GOC:mah];"]
["OS01T0935300-02",0.34725242105666,0.554066010451382,-0.0228801687156241,"OS01G0935300",null,375.977210560705,413.381455748439,420.522870138418,356.415847303808,"no","OS01G0935300","Cullin 1B-like [Source:UniProtKB/TrEMBL;Acc:Q5JMQ6]","Similar to cullin-1. (Os01t0935300-01);Cullin family protein. (Os01t0935300-02)",1,41052368,41056409,"GO:0042787;GO:0031625;GO:0061630;GO:0006511;GO:0031461;","protein ubiquitination involved in ubiquitin-dependent protein catabolic process;ubiquitin protein ligase binding;ubiquitin protein ligase activity;ubiquitin-dependent protein catabolic process;cullin-RING ubiquitin ligase complex;","The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity. [PMID:15571813, PMID:15688063];"]
["OS11T0686100-02",0.34772529169696104,0.5542670863384951,-0.9800729538874241,"OS11G0686100",null,10.6784523626947,9.50756471656889,6.12283963737749,4.11054455836499,"no","OS11G0686100","Os11g0686100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5N0]","Conserved hypothetical protein. (Os11t0686100-01);Conserved hypothetical protein. (Os11t0686100-02)",11,27758164,27761632]
["OS06T0153100-01",0.34857728880871,0.55490482115901,-0.41499187122128606,"OS06G0153100",null,25.8352009797707,39.1626191298689,20.8557980190714,27.8941088501049,"no","OS06G0153100","Os06g0153100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KLJ7]","Conserved hypothetical protein. (Os06t0153100-01)",6,2737888,2739092]
["OS11T0549695-01",0.34964922871754,0.555829295789494,-0.200833081603317,"OS11G0549695",null,170.198904599012,229.51717208208,174.199904322385,173.572272992547,"no","OS11G0549695","NA","Maf-like protein family protein. (Os11t0549695-01)","NA","NA","NA","NA","NA","NA"]
["OS01T0247900-01",0.35048508303297804,0.556260792562262,-0.154429447249358,"OS01G0247900",null,101.925391942615,93.6690539703515,82.9349306734922,92.8042602294181,"no","OS01G0247900","Os01g0247900 protein [Source:UniProtKB/TrEMBL;Acc:Q5NAK9]","AWPM-19-like family protein. (Os01t0247900-01)",1,8146442,8148059,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0510400-01",0.35036413677550304,0.556260792562262,0.0024341868758286,"OS04G0510400",null,221.507968147581,233.714115081269,245.274513688065,210.716291226359,"no","OS04G0510400","DEAD-box ATP-dependent RNA helicase 13 [Source:UniProtKB/Swiss-Prot;Acc:A3AVH5]","Similar to RNA helicase (Fragment). (Os04t0510400-01);Similar to DEAD-box ATP-dependent RNA helicase 13. (Os04t0510400-02)",4,25535365,25541426,"GO:0005730;GO:0010501;GO:0004004;GO:0005737;GO:0003723;GO:0004386;GO:0016787;GO:0003676;GO:0005524;GO:0000166","nucleolus;RNA secondary structure unwinding;ATP-dependent RNA helicase activity;cytoplasm;RNA binding;helicase activity;hydrolase activity;nucleic acid binding;ATP binding;nucleotide binding","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The process in which a secondary structure of RNA are broken or 'melted'. [PMID:17169986];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS02T0267700-00",0.351295516841356,0.5570261900839281,0.207041947331734,"OS02G0267700",null,60.4052050606439,73.2742946782851,71.5863710269514,82.722412709418,"no","OS02G0267700","Os02g0267700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VHC9]","Similar to Expansin-A14. (Os02t0267700-00)",2,9569705,9570573,"GO:0005618;GO:0005576;GO:0009664;GO:0016020;GO:0071555","cell wall;extracellular region;plant-type cell wall organization;membrane;cell wall organization","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS03T0135600-01",0.35237752285226404,0.558080904901574,0.0829682096036581,"OS03G0135600",null,126.384564731771,123.707215524033,140.655261365573,124.240700476067,"no","OS03G0135600","Ankyrin repeat domain-containing protein, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G66055) UniProtKB/Swiss-Prot;Acc:Q05753]","Similar to Ankyrin repeat protein. (Os03t0135600-01)",3,1970948,1979567,"GO:0009507","chloroplast","A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS12T0118850-00",0.35313051573069304,0.5586103506457041,0.659959599887978,"OS12G0118850",null,10.6853169255008,14.2186471520147,17.352720521075,21.9964984593109,"no","OS12G0118850","Os12g0118850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTH5]","Hypothetical protein. (Os12t0118850-00)",12,909274,912128,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0533300-01",0.35367172715204104,0.558737557254781,0.0578048835399255,"OS08G0533300",null,220.158846596049,190.102588013194,198.663789547791,228.369466804817,"no","OS08G0533300","Os08g0533300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQ73]","Similar to ACR5. (Os08t0533300-01)",8,26572162,26574946,"GO:0016740","transferase activity","Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0169600-01",0.35358185590475505,0.558737557254781,-0.70777697481104,"OS12G0169600",null,12.2310470331138,16.4692842145673,9.75705066746967,7.81509559826679,"no","OS12G0169600","Os12g0169600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7D8]","Similar to Fructose-bisphosphate aldolase. (Os12t0169600-01)",12,3542861,3544916,"GO:0004332;GO:0006096;GO:0003824","fructose-bisphosphate aldolase activity;glycolytic process;catalytic activity","Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate. [EC:4.1.2.13];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS06T0644200-02",0.35460625606768303,0.559540449672676,-1.25915178502481,"OS06G0644200",null,6.17962092724977,10.3408019085202,3.93674453227823,2.96531502387408,"no","OS06G0644200","Inorganic diphosphatase, H+-translocating, vacuolar membrane [Source:UniProtKB/TrEMBL;Acc:Q67WN5]","Similar to Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Vacuolar H+-pyrophosphatase). (Os06t0644200-01);Similar to Vacuolar H+-pyrophosphatase. (Os06t0644200-02);Similar to Vacuolar H+-pyrophosphatase. (Os06t0644200-03)",6,26272898,26278664,"GO:0015992;GO:0009678;GO:0004427;GO:0055085;GO:0016020;GO:0016021;GO:0016787","proton transport;hydrogen-translocating pyrophosphatase activity;inorganic diphosphatase activity;transmembrane transport;membrane;integral component of membrane;hydrolase activity","The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Catalysis of the hydrolysis of pyrophosphate, which generates a proton motive force. [GOC:mtg_transport, ISBN:0815340729, TC:3.A.10.-.-];Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate. [EC:3.6.1.1, RHEA:24579];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS10T0509900-01",0.355303625364416,0.5599272728818241,-0.327790255991231,"OS10G0509900",null,59.1167273267169,40.1438802730078,34.1496773361438,44.9367996900341,"no","OS10G0509900","Os10g0509900 protein [Source:UniProtKB/TrEMBL;Acc:Q0IWG8]","Hypothetical protein. (Os10t0509900-01)",10,19598530,19599168]
["OS10T0351500-01",0.355702987201968,0.5601785130082061,-0.166063483395953,"OS10G0351500",null,89.6943449095016,83.3757513362469,79.0321104065043,75.2202951333179,"no","OS10G0351500","Os10g0351500 protein [Source:UniProtKB/TrEMBL;Acc:Q339I2]","Tyrosine protein kinase domain containing protein. (Os10t0351500-01)",10,10699268,10701907,"GO:0007166;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0317100-01",0.35700216995945405,0.561210717602328,0.57678063351228,"OS03G0317100",null,14.3729569961827,28.8212473754928,40.9796128033726,23.4452867948004,"no","OS03G0317100","Os03g0317100 protein [Source:UniProtKB/TrEMBL;Acc:C7J0P7]","Pentatricopeptide repeat domain containing protein. (Os03t0317100-01)",3,11412715,11416313,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0818100-00",0.357748583459424,0.5617770724636281,-0.203634619430235,"OS01G0818100",null,93.0251374145564,86.4056443227213,79.5995303263663,76.2110053407192,"no","OS01G0818100","Os01g0818100 protein [Source:UniProtKB/TrEMBL;Acc:Q5QMK9]","Hypothetical conserved gene. (Os01t0818100-00)",1,34842150,34843713]
["OS03T0672400-01",0.35787221747122905,0.5618112675800161,-0.13574771855929302,"OS03G0672400",null,816.422389460349,822.434880464954,824.470781401187,667.213786702027,"no","OS03G0672400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q84R70]","Conserved hypothetical protein. (Os03t0672400-01)",3,26531313,26534354,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0443800-02",0.35861465026501105,0.56237754865778,0.08372085459992501,"OS12G0443800",null,119.972823023608,107.856338337875,122.476228820554,118.965204159301,"no","OS12G0443800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QS10]","Hypothetical conserved gene. (Os12t0443800-01);Similar to ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding. (Os12t0443800-02)",12,14907829,14916625,"GO:0005524;GO:0000166;","ATP binding;nucleotide binding;","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];"]
["OS03T0857750-00",0.35977254786621704,0.563468917622403,0.16089332264334,"OS03G0857750",null,95.8098684260585,82.3464210728365,90.7405712074679,108.434451425952,"no","OS03G0857750","Os03g0857750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W689]","Similar to predicted protein. (Os03t0857750-00)",3,36193368,36193680]
["OS12T0580500-01",0.36034847270366804,0.5636676025833971,-0.09162441445700249,"OS12G0580500",null,166.138388866463,163.663511882262,136.598709344575,172.908990111653,"no","OS12G0580500","Os12g0580500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBN8]","Transcriptional coactivator SAGA-type complex, Ada1/Tada1 domain containing protein. (Os12t0580500-01)",12,24045274,24047098,"GO:0000124;GO:0043966;GO:0004402;GO:0003713;GO:0006357;GO:0070461","SAGA complex;histone H3 acetylation;histone acetyltransferase activity;transcription coactivator activity;regulation of transcription from RNA polymerase II promoter;SAGA-type complex","A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8. [PMID:10637607, PMID:17337012, PMID:19056896, PMID:20838651];The modification of histone H3 by the addition of an acetyl group. [GOC:jl];Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone. [EC:2.3.1.48];Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. [GOC:mah, PMID:10637607, PMID:17337012]"]
["OS11T0258400-01",0.360956156800319,0.564010733547184,0.24579656695710103,"OS11G0258400",null,67.6634046109001,50.8494888346102,68.1975064791441,72.3288353433127,"no","OS11G0258400","Os11g0258400 protein [Source:UniProtKB/TrEMBL;Acc:Q0ITG6]","Hypothetical protein. (Os11t0258400-01)",11,8567230,8572839]
["OS06T0604500-01",0.361119904682906,0.564084837050572,0.14087155912829402,"OS06G0604500",null,130.596394815519,116.548980908627,122.841134561841,149.654189133984,"no","OS06G0604500","Os06g0604500 protein [Source:UniProtKB/TrEMBL;Acc:Q69X19]","EF-Hand type domain containing protein. (Os06t0604500-01);Hypothetical conserved gene. (Os06t0604500-02)",6,23935983,23942143,"GO:0006810;GO:0055085;GO:0016020;GO:0016021;GO:0006839;GO:0015867;GO:0015866;GO:0005743;GO:0005509;GO:0015217;GO:0005347","transport;transmembrane transport;membrane;integral component of membrane;mitochondrial transport;ATP transport;ADP transport;mitochondrial inner membrane;calcium ion binding;ADP transmembrane transporter activity;ATP transmembrane transporter activity","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Transport of substances into, out of or within a mitochondrion. [GOC:ai];The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other. [GOC:ai];Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. [GOC:ai]"]
["OS09T0112400-01",0.361640513872921,0.564303024139658,-0.0699222454252641,"OS09G0112400",null,184.484959416134,223.364667160069,203.922358950116,184.631633509053,"no","OS09G0112400","Os09g0112400 protein [Source:UniProtKB/TrEMBL;Acc:Q6YXA0]","Similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein). (Os09t0112400-01)",9,1006810,1012534]
["OS05T0430200-01",0.36280249225396805,0.565412249711449,0.33205734173981905,"OS05G0430200",null,60.420445224317,75.0316060094516,99.7673141441021,70.7407039345918,"no","OS05G0430200","Os05g0430200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WMS7]","Similar to ATP binding protein. (Os05t0430200-01);Similar to ATP binding protein. (Os05t0430200-02)",5,21112635,21117398,"GO:0016310;GO:0016301","phosphorylation;kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS05T0365600-01",0.363738737659047,0.566091687278244,-0.74987983522787,"OS05G0365600","BGLU19",10.1925391942615,22.64526579503,8.7813456007227,10.7457564476168,"no","OS05G0365600","Beta-glucosidase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q0DIT2]","Similar to Hydroxyisourate hydrolase. (Os05t0365600-01)",5,17530348,17534432,"GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787","glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0385301-01",0.36422644611036903,0.566288032286827,0.06702547334492939,"OS03G0385301",null,557.531893926106,648.478065948587,602.985731249625,660.375578053544,"no","OS03G0385301","Os03g0385301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VY39]","Conserved hypothetical protein. (Os03t0385301-01)",3,15295400,15297903]
["OS01T0207200-01",0.364802119635079,0.566601269114261,-0.18656757163947302,"OS01G0207200",null,244.620940662277,309.828409286547,227.339280552043,259.851928642371,"no","OS01G0207200","Os01g0207200 protein [Source:UniProtKB/TrEMBL;Acc:Q8LRJ4]","Similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (EC 3.5.1.52) (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) (PNGase A subunit B); Peptide-N4- (N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain (PNGase A large chain) (PNGase A subunit A)]. (Os01t0207200-01)",1,5828556,5830828]
["OS01T0701600-00",0.365177293163435,0.566886675510862,0.8221055017942771,"OS01G0701600",null,25.7216762988704,1.7927821479309502E-3,19.500891860943,25.9777988258387,"no","OS01G0701600","Os01g0701600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDK8]","Hypothetical protein. (Os01t0701600-00)",1,29045089,29048048]
["OS07T0268800-01",0.36567435294669204,0.56703964219999,-0.10671755657199401,"OS07G0268800",null,190.576314523975,160.508502290907,178.542066122,147.509929417286,"no","OS07G0268800","Os07g0268800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z5S4]","Protein of unknown function DUF594 family protein. (Os07t0268800-01)",7,9738390,9740798,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0233400-01",0.366724016642871,0.568017853306616,-0.0883783768157906,"OS12G0233400",null,901.02046477272,1004.62633708861,951.312440078293,841.099663763463,"no","OS12G0233400","Os12g0233400 protein [Source:UniProtKB/TrEMBL;Acc:Q2QVE1]","Zinc finger, C2H2-like domain containing protein. (Os12t0233400-01)",12,7306653,7311336,"GO:0006355;GO:0003676;GO:0016020;GO:0016021","regulation of transcription, DNA-templated;nucleic acid binding;membrane;integral component of membrane","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0204800-02",0.367320338661344,0.568321081917561,0.28688535572011603,"OS07G0204800",null,51.9819498907339,50.4371829071123,74.1535850727695,50.7981213887341,"no","OS07G0204800","Os07g0204800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3W9]","Similar to Charged multivesicular body protein 2a. (Os07t0204800-01);Non-protein coding transcript. (Os07t0204800-02)",7,5640466,5642747]
["OS08T0204632-01",0.36822961011361305,0.569022864204699,-0.25155278101182305,"OS08G0204632",null,206.334867211895,283.870219824119,189.844351187429,221.923922078799,"no","OS08G0204632","Os08g0204632 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCU0]","Conserved hypothetical protein. (Os08t0204632-01)",8,6102975,6105362,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0181200-02",0.368876235299319,0.56940531986655,0.8198283462637691,"OS10G0181200",null,33.2104574130372,15.3932318071077,43.426927510882,42.3681080874643,"no","OS10G0181200","Pentatricopeptide repeat-containing protein MRL1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G34830) UniProtKB/Swiss-Prot;Acc:Q0WLC6]","Similar to binding protein. (Os10t0181200-01);Similar to (RAP Annotation release2) Protein prenyltransferase domain containing protein. (Os10t0181200-02)",10,5577475,5586604,"GO:0009451;GO:0004519;GO:0003723;GO:0009507;GO:0090305;GO:0016740;GO:0048255","RNA modification;endonuclease activity;RNA binding;chloroplast;nucleic acid phosphodiester bond hydrolysis;transferase activity;mRNA stabilization","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules. [GOC:jid]"]
["OS04T0474550-01",0.36896993089211605,0.569418059737129,-0.0796364287084016,"OS04G0474550",null,116.753971782038,119.271436865622,107.143854960829,116.206066680039,"no","OS04G0474550","Os04g0474550 protein [Source:UniProtKB/TrEMBL;Acc:C7J1Q1]","Hypothetical protein. (Os04t0474550-01)",4,23731897,23733945]
["OS02T0193600-01",0.369993369887655,0.570231541530804,-0.189607073269307,"OS02G0193600",null,425.028884400706,487.902544856556,452.727150970593,347.771754122872,"no","OS02G0193600","Mitotic spindle checkpoint protein BUBR1 [Source:Projected from Arabidopsis thaliana (AT2G33560) UniProtKB/Swiss-Prot;Acc:O22806]","Mitotic checkpoint serine/threonine protein kinase, Bub1 domain containing protein. (Os02t0193600-01)",2,5209234,5212362,"GO:0007094;GO:0004672;GO:0006468;GO:0051754;GO:0000778","mitotic spindle assembly checkpoint;protein kinase activity;protein phosphorylation;meiotic sister chromatid cohesion, centromeric;condensed nuclear chromosome kinetochore","A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The cell cycle process in which centromeres of sister chromatids are joined during meiosis. [PMID:14730319, PMID:16325576];A multisubunit complex that is located at the centromeric region of a condensed nuclear chromosome and provides an attachment point for the spindle microtubules. [GOC:elh]"]
["OS01T0265900-00",0.371010623829576,0.571124934712611,0.0613606649206017,"OS01G0265900",null,136.580025203105,123.519631609255,143.428644811804,127.972190421619,"no","OS01G0265900","Os01g0265900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0P5]","Similar to translin family protein. (Os01t0265900-00)",1,9067828,9071250,"GO:0005634;GO:0043565","nucleus;sequence-specific DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl]"]
["OS11T0456100-01",0.37197631311955404,0.572006257219077,0.101722434548042,"OS11G0456100",null,241.563178903999,277.919171120823,305.395685891801,252.036833044104,"no","OS11G0456100","Os11g0456100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2F2]","Protein of unknown function DUF760 domain containing protein. (Os11t0456100-01)",11,15447285,15450034]
["OS10T0567200-01",0.372758554725979,0.5724927844272071,0.065656526623087,"OS10G0567200",null,202.484808677783,176.024842087718,215.615544231177,180.517928281728,"no","OS10G0567200","Os10g0567200 protein [Source:UniProtKB/TrEMBL;Acc:Q0IVJ7]","Hypothetical protein. (Os10t0567200-01)",10,22474235,22477716]
["OS11T0101200-03",0.37345786314261104,0.5729579509256321,0.222631222508809,"OS11G0101200",null,674.764715800109,486.101249772888,750.694579930209,603.873241987108,"no","OS11G0101200","Os11g0101200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XXP9]","Similar to RNase P subunit p30 family protein, expressed. (Os11t0101200-01);Similar to RNase P subunit p30 family protein, expressed. (Os11t0101200-02);Similar to CCT motif family protein. (Os11t0101200-03)",11,38621,44608,"GO:0005634;","nucleus;","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];"]
["OS01T0754200-03",0.373750481083271,0.573234171589162,0.0716094040908539,"OS01G0754200",null,169.598578212726,201.419670142666,180.535729204029,209.363026587348,"no","OS01G0754200","Os01g0754200 protein [Source:UniProtKB/TrEMBL;Acc:Q8S1X0]","Glycosyl transferase, family 48 protein. (Os01t0754200-01);Similar to ATGSL05 (GLUCAN SYNTHASE-LIKE 5); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups. (Os01t0754200-02);Glycosyl transferase, family 48 protein. (Os01t0754200-03);Similar to predicted protein. (Os01t0754200-04)",1,31641231,31648357,"GO:0000148;GO:0006075;GO:0003843;GO:0016020;GO:0016021","1,3-beta-D-glucan synthase complex;(1->3)-beta-D-glucan biosynthetic process;1,3-beta-D-glucan synthase activity;membrane;integral component of membrane","A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain. [EC:2.4.1.34];The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. [GOC:ai];Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). [EC:2.4.1.34];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0461350-00",0.37453422246413204,0.5737631973396641,-0.315016646281343,"OS05G0461350",null,38.7316489381939,32.9385684291346,20.4898064016863,37.1217040917673,"no","OS05G0461350","Os05g0461350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WN96]","Hypothetical gene. (Os05t0461350-00)",5,22654851,22655486]
["OS02T0686300-01",0.375442217289263,0.5744803395450491,0.125109227497733,"OS02G0686300",null,137.599279122531,104.991686867867,139.525824544816,125.041529572269,"no","OS02G0686300","Os02g0686300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DYK5]","Similar to H0307D04.3 protein. (Os02t0686300-01)",2,28108634,28113427,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS04T0295901-00",0.37630084276666503,0.575149657774016,0.041100881894441096,"OS04G0295901",null,163.160790020607,144.223038537154,163.704886570921,152.561920323646,"no","OS04G0295901","Os04g0295901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W888]","Hypothetical gene. (Os04t0295901-00)",4,13026516,13029118]
["OS06T0516800-01",0.37713568998740604,0.575759607871239,-0.15099600938023403,"OS06G0516800",null,92.1297893726569,113.219674209719,96.9350798605132,88.008493558888,"no","OS06G0516800","Os06g0516800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXH8]","Hypothetical gene. (Os06t0516800-01)",6,18913388,18915920]
["OS01T0328300-02",0.378161736332001,0.57649367376357,-0.5755570461061671,"OS01G0328300",null,63.3726042532596,46.4808619410055,42.4012163386149,31.3134373606356,"no","OS01G0328300","Os01g0328300 protein [Source:UniProtKB/TrEMBL;Acc:B7ESQ3]","Similar to cDNA clone:J033084P10, full insert sequence. (Os01t0328300-01);Hypothetical conserved gene. (Os01t0328300-02);Protein of unknown function DUF295 domain containing protein. (Os01t0328300-03)",1,12636445,12640675,"GO:0016668;GO:0016491;GO:0055114","oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor;oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP. [GOC:jl];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS05T0281400-01",0.378132540135087,0.57649367376357,0.111756266615432,"OS05G0281400",null,161.365266064208,143.551233247512,177.226646475032,152.248692541999,"no","OS05G0281400","Os05g0281400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WKB6]","Protein of unknown function DUF810 domain containing protein. (Os05t0281400-01)",5,11891585,11892690]
["OS05T0560600-01",0.378822113903418,0.5769290276644851,-0.018674246492145198,"OS05G0560600",null,460.555202831345,416.514852042655,463.908336811244,401.882081432252,"no","OS05G0560600","Os05g0560600 protein [Source:UniProtKB/TrEMBL;Acc:Q688Y5]","Homeodomain-like containing protein. (Os05t0560600-01);Homeodomain-like containing protein. (Os05t0560600-02)",5,27899055,27902494]
["OS12T0262100-01",0.379855772898579,0.577783210873115,-0.056890281971801696,"OS12G0262100",null,122.310470331139,119.402310555613,109.27896747566,123.087755672702,"no","OS12G0262100","HAT family dimerisation domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QUI7]","HAT dimerisation domain containing protein. (Os12t0262100-01)",12,9209610,9211645,"GO:0005634;GO:0006357;GO:0003700;GO:0000977;GO:0046983;GO:0003676;GO:0003677","nucleus;regulation of transcription from RNA polymerase II promoter;transcription factor activity, sequence-specific DNA binding;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;nucleic acid binding;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS02T0784400-00",0.380843475313681,0.57844562022304,0.38184069878774,"OS02G0784400",null,24.4620940662277,17.4986144779778,25.3683317354211,29.3066084935005,"no","OS02G0784400","Os02g0784400 protein [Source:UniProtKB/TrEMBL;Acc:Q6K7C9]","Hypothetical conserved gene. (Os02t0784400-00)",2,33301587,33303132]
["OS04T0522800-01",0.38162638377165903,0.579150073365375,0.0147304433014912,"OS04G0522800",null,132.5030095254,124.548961872665,133.671594144334,126.018416522052,"no","OS04G0522800","Os04g0522800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBN1]","Photosystem II oxygen evolving complex protein PsbQ family protein. (Os04t0522800-01)",4,26158845,26166779,"GO:0015074;GO:0019898;GO:0009654;GO:0009523;GO:0015979;GO:0005509;GO:0003676","DNA integration;extrinsic component of membrane;photosystem II oxygen evolving complex;photosystem II;photosynthesis;calcium ion binding;nucleic acid binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. [GOC:dos, GOC:jl, GOC:mah];A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). [GOC:cjm, InterPro:IPR002683];A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. [GOC:ds, GOC:mah, ISBN:0943088399, PMID:9821949];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS08T0501500-00",0.38192202311410606,0.5794548170125721,-0.16846581476407,"OS08G0501500",null,89.6943449095016,96.7570447605829,69.1904744706286,96.7118080285515,"no","OS08G0501500","Os08g0501500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XHX6]","EGF-type aspartate/asparagine hydroxylation site domain containing protein. (Os08t0501500-00)",8,24767565,24771071,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0435900-01",0.38294881762034,0.58037860389586,-0.0390079150236841,"OS03G0435900",null,95.3002414663454,100.359700682519,98.0583592080702,92.3821650193112,"no","OS03G0435900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10J33]","Peptidase S8 and S53, subtilisin, kexin, sedolisin domain containing protein. (Os03t0435900-01)",3,18390335,18392238,"GO:0008274;GO:0000923;GO:0090307;GO:0051415;GO:0043015;GO:0033566;GO:0031021","gamma-tubulin ring complex;equatorial microtubule organizing center;mitotic spindle assembly;interphase microtubule nucleation by interphase microtubule organizing center;gamma-tubulin binding;gamma-tubulin complex localization;interphase microtubule organizing center","A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins that forms a flexible open ring structure thought to be the unit of nucleation at the minus end of a microtubule. [GOC:clt, PMID:12134075];A microtubule organizing center formed by a band of gamma-tubulin that is recruited to a circumferential band of F-actin at the midpoint of a cell and which nucleates microtubules from the cell division site at the end of mitosis. [PMID:11792817];The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis. [GOC:tb, GOC:vw];The 'de novo' formation of a microtubule by the interphase microtubule organizing center during interphase, the stage of cell cycle between successive rounds of chromosome segregation. [GOC:ai];Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin. [GOC:jl];Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location. [GOC:mah];A microtubule organizing center found in interphase cells, which organize a longitudinal array of three to five MT bundles from the nuclear envelope during interphase. Each MT bundle is composed of two to seven MTs arranged in an antiparallel configuration, with the dynamic MT plus ends extending toward the cell tips and stable minus ends near the nucleus. [PMID:15068790]"]
["OS07T0158500-00",0.38402417208371603,0.581114735289831,-0.14814051455568902,"OS07G0158500",null,226.274370112606,194.543419784576,212.703704550839,167.047668412953,"no","OS07G0158500","Os07g0158500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KMY8]","Similar to HAP2 subunit of HAP complex. (Os07t0158500-00)",7,3127749,3130514,"GO:0016602;GO:0003700;GO:0006355;GO:0003677","CCAAT-binding factor complex;transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated;DNA binding","A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. [GOC:bm, PMID:7828851];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS05T0158600-01",0.38464591744799104,0.5815390877183271,-0.482227283588507,"OS05G0158600",null,122.511325985854,66.4850981459307,74.9911741302759,60.3059951199689,"no","OS05G0158600","Os05g0158600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KK69]","Similar to OsGA2ox1. (Os05t0158600-01);GA 2-oxidase1, GA metabolism (Os05t0158600-02)",5,3459576,3465989]
["OS08T0197000-01",0.38525919989539903,0.581899655505096,0.199863358744287,"OS08G0197000",null,56.701598214527,51.0029436269347,61.3447702296403,62.3635425307644,"no","OS08G0197000","Os08g0197000 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z064]","Cyclin-like F-box domain containing protein. (Os08t0197000-01)",8,5609250,5612337]
["OS04T0369000-01",0.38635181228235405,0.582809570525474,-0.389157393068142,"OS04G0369000",null,51.9819498907339,29.8505776389032,29.271152002409,33.2141562926339,"no","OS04G0369000","Os04g0369000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDW4]","PapD-like domain containing protein. (Os04t0369000-01)",4,17913242,17914650,"GO:0005789","endoplasmic reticulum membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah]"]
["OS01T0814400-02",0.38688162128071,0.582955920157717,0.0331255528430856,"OS01G0814400",null,1498.15811810116,1750.22988589115,1595.52674367097,1728.30998907015,"no","OS01G0814400","Os01g0814400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9N0]","Conserved hypothetical protein. (Os01t0814400-01);Conserved hypothetical protein. (Os01t0814400-02);Similar to 91A protein (Fragment). (Os01t0814400-03)",1,34639786,34642794,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0295500-02",0.386980330432658,0.583018050958064,-0.195275140422104,"OS06G0295500",null,78.7903509734549,94.3751202130024,79.8318733234283,71.4119419303811,"no","OS06G0295500","Os06g0295500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVP0]","Hypothetical gene. (Os06t0295500-01);Hypothetical protein. (Os06t0295500-02);Non-protein coding transcript. (Os06t0295500-03)",6,10907283,10918688,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS01T0177100-02",0.38781216214060404,0.583523131136161,0.170864774389618,"OS01G0177100",null,64.2129969238477,65.8771368582692,71.2264698725286,75.2202951333179,"no","OS01G0177100","Transcriptional corepressor LEUNIG [Source:Projected from Arabidopsis thaliana (AT4G32551) UniProtKB/Swiss-Prot;Acc:Q9FUY2]","Similar to STYLOSA protein. (Os01t0177100-01);Similar to STYLOSA protein. (Os01t0177100-02)",1,3975902,3984909]
["OS04T0452700-01",0.38895965791108705,0.584684124316325,-0.571097415121815,"OS04G0452700",null,203.109583857061,106.215724965247,76.6895594675527,131.518723554616,"no","OS04G0452700","Os04g0452700 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCR9]","Similar to Monosaccharide transporter 1. (Os04t0452700-01)",4,22598600,22601272,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0008643;GO:0022891;GO:0022857;GO:0006810;GO:0055085;GO:0005215;GO:0016021;GO:0015293;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;carbohydrate transport;substrate-specific transmembrane transporter activity;transmembrane transporter activity;transport;transmembrane transport;transporter activity;integral component of membrane;symporter activity;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0508266-01",0.39025162499727806,0.58589521606471,0.0716065575064573,"OS12G0508266",null,138.618533041957,179.103465833419,169.772681613972,164.117007563603,"no","OS12G0508266","Os12g0508266 protein [Source:UniProtKB/TrEMBL;Acc:B9GDC7]","Histone deacetylase superfamily protein. (Os12t0508266-01)",12,19531967,19534815,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0175700-01",0.39041482031797503,0.5859962461486,1.46548613402721,"OS08G0175700",null,2.03850783885231,2.05866052682091,5.45327544302563,5.86132169870009,"no","OS08G0175700","Os08g0175700 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7N7]","Hypothetical protein. (Os08t0175700-01)",8,4413202,4414401]
["OS02T0120800-01",0.391492421300826,0.5869792636591671,-0.0459591305192937,"OS02G0120800","RAC6",792.305707224629,888.156811023301,755.44794372391,872.324729575981,"no","OS02G0120800","Rac-like GTP-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZHA3]","Similar to Small GTP-binding protein (Fragment). (Os02t0120800-01);Similar to Small GTP-binding protein (Fragment). (Os02t0120800-02)",2,1080513,1084282,"GO:0005515;GO:0005525;GO:0005737;GO:0007264;GO:0005622;GO:0000166;GO:0003924;GO:0016020;GO:0005886","protein binding;GTP binding;cytoplasm;small GTPase mediated signal transduction;intracellular;nucleotide binding;GTPase activity;membrane;plasma membrane","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS10T0544200-01",0.392372357505394,0.587606502941267,-0.61774745957757,"OS10G0544200",null,30.5776175827846,47.349192116881,11.7084608009636,39.075477991334,"no","OS10G0544200","Helix-loop-helix DNA-binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q336V8]","Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os10t0544200-01)",10,21244725,21247074,"GO:0005634;GO:0046983;GO:0003677","nucleus;protein dimerization activity;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS09T0479100-01",0.39310401128856604,0.5881223403387591,0.10297996686641,"OS09G0479100",null,104.983153700894,104.991686867867,123.914543476865,101.596242777468,"no","OS09G0479100","Os09g0479100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPN5]","F-box domain, cyclin-like domain containing protein. (Os09t0479100-01)",9,18364592,18368193]
["OS05T0129700-01",0.394212424697147,0.589189523008763,0.16896109103940102,"OS05G0129700","OSH71",960.983650219511,889.93571178494,918.427062009367,1162.46644460808,"no","OS05G0129700","Homeobox protein knotted-1-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q7GDL5]","KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71). (Os05t0129700-01)",5,1724513,1730837,"GO:0003677;GO:0043565;GO:0005634;GO:0006355","DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0258700-01",0.395306459923957,0.58997620847036,0.535536637096739,"OS12G0258700",null,142.695548719662,80.2877605460156,115.133197876142,208.076920303853,"no","OS12G0258700","Laccase [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8S2]","Cupredoxin domain containing protein. (Os12t0258700-01)",12,8960777,8964016,"GO:0016722;GO:0048046;GO:0046274;GO:0052716;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0005576","oxidoreductase activity, oxidizing metal ions;apoplast;lignin catabolic process;hydroquinone:oxygen oxidoreductase activity;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;extracellular region","Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. [GOC:mah];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. [GOC:ai];Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. [EC:1.10.3.2];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0356596-01",0.39602416534448304,0.590441650380863,0.75134870453437,"OS03G0356596",null,4.07701567770462,9.2639723706941,8.7813456007227,13.6764172969669,"no","OS03G0356596","Os03g0356596 protein [Source:UniProtKB/TrEMBL;Acc:C7J0B6]","Similar to Phosphatidylinositol-4-phosphate 5-kinase-like protein. (Os03t0356596-01)",3,13719816,13723311,"GO:0046854;GO:0046488;GO:0016307;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0016740","phosphatidylinositol phosphorylation;phosphatidylinositol metabolic process;phosphatidylinositol phosphate kinase activity;phosphorylation;kinase activity;ATP binding;nucleotide binding;transferase activity","The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:0198506732];The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:0198506732];Catalysis of the reaction: ATP + a phosphatidylinositol phosphate = ADP + a phosphatidylinositol bisphosphate. [EC:2.7.1.-, PMID:9759495];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0637100-00",0.39620384130930203,0.5905351562340331,-0.44535281673478505,"OS01G0637100",null,22.8622979392249,22.2846263773115,16.0270565662481,17.1290565320211,"no","OS01G0637100","Os01g0637100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5Q4]","Similar to predicted protein. (Os01t0637100-00)",1,25541512,25542937]
["OS05T0372800-01",0.39741056712414,0.591632428799551,0.14968129461082602,"OS05G0372800",null,518.800244987912,451.87598563719,587.374450181674,489.420361841458,"no","OS05G0372800","Os05g0372800 protein [Source:UniProtKB/TrEMBL;Acc:Q6I5Q2]","Cyclin-like F-box domain containing protein. (Os05t0372800-01)",5,17951299,17954214]
["OS08T0525900-01",0.39809893433749,0.5920614633636271,0.41445628845369403,"OS08G0525900",null,25.2050776587193,18.1264704783526,24.2257311152941,33.5263954236472,"no","OS08G0525900","Os08g0525900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJ73]","Similar to predicted protein. (Os08t0525900-01);Similar to predicted protein. (Os08t0525900-02)",8,26155728,26158598]
["OS03T0219400-01",0.39914877660063103,0.5927685845173121,0.0269104685237015,"OS03G0219400",null,154.342806903966,128.477716997898,138.681756282185,149.463703316852,"no","OS03G0219400","Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:Q10PW1]","Glycoside hydrolase, family 20 protein. (Os03t0219400-01)",3,6280458,6282712,"GO:0004563;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0102148","beta-N-acetylhexosaminidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;","Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. [EC:3.2.1.52];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];"]
["OS05T0512000-01",0.399689087120629,0.5930983044202951,0.0349583014443959,"OS05G0512000",null,215.062576998919,234.687300057584,255.634727487705,205.146259454503,"no","OS05G0512000","Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:Projected from Arabidopsis thaliana (AT4G21070) UniProtKB/Swiss-Prot;Acc:Q8RXD4]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0512000-01)",5,25357253,25362761,"GO:0070531;GO:0031436;GO:0071158;GO:0045717;GO:0042127;GO:0035067;GO:0035066;GO:0000724;GO:0004842;GO:0045944;GO:0005886;GO:0006974;GO:0016567;GO:0006281;GO:0006310;GO:0010332;GO:0071480;GO:0005634","BRCA1-A complex;BRCA1-BARD1 complex;positive regulation of cell cycle arrest;negative regulation of fatty acid biosynthetic process;regulation of cell proliferation;negative regulation of histone acetylation;positive regulation of histone acetylation;double-strand break repair via homologous recombination;ubiquitin-protein transferase activity;positive regulation of transcription from RNA polymerase II promoter;plasma membrane;cellular response to DNA damage stimulus;protein ubiquitination;DNA repair;DNA recombination;response to gamma radiation;cellular response to gamma radiation;nucleus","A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites. [GOC:mah, PMID:19261749];A heterodimeric complex comprising BRCA1 and BARD1, which possesses ubiquitin ligase activity and is involved in genome maintenance, possibly by functioning in surveillance for DNA damage. [PMID:12787778];Any process that increases the rate, frequency, or extent of cell cycle arrest, the process in which the cell cycle is halted during one of the normal phases. [GOC:mah];Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl];Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of an acetyl group to a histone protein. [GOC:bf];Any process that activates or increases the frequency, rate or extent of the addition of an acetyl group to a histone protein. [GOC:bf];The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum. [GOC:tair_curators, Wikipedia:Gamma_ray];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS10T0561500-01",0.39988160207177603,0.5932399099979081,-0.09914718239515989,"OS10G0561500",null,99.8868841037631,98.8157052874038,84.8863408069861,100.619355827685,"no","OS10G0561500","Os10g0561500 protein [Source:UniProtKB/TrEMBL;Acc:Q336S5]","Serine/threonine protein kinase-related domain containing protein. (Os10t0561500-01)",10,22136957,22141731,"GO:0006950;GO:0016567;GO:0004842;GO:0006468;GO:0005524;GO:0004672","response to stress;protein ubiquitination;ubiquitin-protein transferase activity;protein phosphorylation;ATP binding;protein kinase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS02T0669366-00",0.40072811283011806,0.5937592904155521,-0.7320708143474001,"OS02G0669366",null,19.3327307032082,10.2143013939122,7.76352827133822,10.0249414906637,"no","OS02G0669366","Os02g0669366 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VN47]","Hypothetical gene. (Os02t0669366-00)",2,27183081,27184055]
["OS01T0167800-01",0.401439137378149,0.5941369241475181,0.0311036039620335,"OS01G0167800",null,129.445247767122,126.607622399486,142.452939745057,119.180207873569,"no","OS01G0167800","Os01g0167800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KCE4]","Conserved hypothetical protein. (Os01t0167800-01)",1,3467858,3472105]
["OS03T0162400-01",0.40241785458300505,0.5949466497881,-1.07106951134073,"OS03G0162400",null,12.8610874110451,8.24490485380191,6.05176712898335,3.99396802639217,"no","OS03G0162400","Os03g0162400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DUX3]","Hypothetical protein. (Os03t0162400-01)",3,3379748,3381609]
["OS07T0674300-01",0.40313642950758,0.595408691594101,0.19598047835180002,"OS07G0674300",null,56.0589655684385,55.5838342241646,70.2507648057816,57.6363300372176,"no","OS07G0674300","Os07g0674300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YSW9]","Protein kinase, ATP binding site domain containing protein. (Os07t0674300-01)",7,28503062,28505494,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS02T0732900-01",0.404083273382608,0.596029168560104,-0.0221740591487052,"OS02G0732900",null,232.389893629163,203.80739215527,236.120626152766,193.423616057103,"no","OS02G0732900","APO protein 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G57930) UniProtKB/Swiss-Prot;Acc:Q8W4A5]","Protein of unknown function DUF794, plant family protein. (Os02t0732900-01)",2,30557558,30560948,"GO:0003723","RNA binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS05T0366300-02",0.404784291636253,0.596544772469771,0.00722540069717951,"OS05G0366300",null,225.609172817823,254.318012660123,263.84776768113,218.489049863357,"no","OS05G0366300","Os05g0366300 protein [Source:UniProtKB/TrEMBL;Acc:Q75IS4]","Conserved hypothetical protein. (Os05t0366300-01);Hypothetical conserved gene. (Os05t0366300-02)",5,17581260,17588053]
["OS02T0772100-01",0.40515056113791403,0.5968597374687821,-0.32080910781161703,"OS02G0772100",null,48.1732005008157,34.810125805099,32.3171158524864,34.1210561699214,"no","OS02G0772100","Os02g0772100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KG62]","Conserved hypothetical protein. (Os02t0772100-01)",2,32591800,32593204]
["OS08T0155400-02",0.40583408736771204,0.5972276401550191,0.264057188499748,"OS08G0155400",null,58.7263337246633,53.3481493821749,54.4938807395148,80.0908775492649,"no","OS08G0155400","Os08g0155400 protein [Source:UniProtKB/TrEMBL;Acc:Q0J7Y1]","Similar to Nitrate/chlorate transporter. (Os08t0155400-01);Similar to cDNA clone:J023045B01, full insert sequence. (Os08t0155400-02);Similar to cDNA clone:J023045B01, full insert sequence. (Os08t0155400-03)",8,3182341,3190117,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0006857","transport;transporter activity;membrane;integral component of membrane;oligopeptide transport","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:0198506732]"]
["OS04T0686600-01",0.40686358345181706,0.598022524854224,-0.0413858111831854,"OS04G0686600",null,314.949461102682,272.772519803771,311.249916292282,259.851928642371,"no","OS04G0686600","Os04g0686600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WGL8]","Similar to H0723C07.12 protein. (Os04t0686600-01)",4,35089396,35091243,"GO:0006468;GO:0005524;GO:0004672;GO:0008270","protein phosphorylation;ATP binding;protein kinase activity;zinc ion binding","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS04T0633600-00",0.407647040246144,0.59855938388861,0.33754962259381904,"OS04G0633600",null,22.4235862273754,27.7919171120823,37.0767925363847,26.3759476441504,"no","OS04G0633600","Os04g0633600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KJS0]","Similar to H0613A10.6 protein. (Os04t0633600-00)",4,32239057,32242134,"GO:0016310;GO:0016301;GO:0004674;GO:0048544;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","phosphorylation;kinase activity;protein serine/threonine kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0626466-01",0.40850429050908604,0.599108250942473,-0.10123371501900301,"OS06G0626466",null,106.430236038332,109.883802410567,99.4642175006879,102.191398140192,"no","OS06G0626466","Os06g0626466 protein [Source:UniProtKB/TrEMBL;Acc:B9EWT6]","Hypothetical conserved gene. (Os06t0626466-01)",6,25289149,25292027]
["OS06T0537300-00",0.40864597186514,0.599287271752688,1.11553321640953,"OS06G0537300",null,3.05776175827846,4.92338490231685,11.9529345786404,5.34022108282791,"no","OS06G0537300","Os06g0537300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXD1]","Zinc finger, RING-type domain containing protein. (Os06t0537300-00)",6,20131512,20132168,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0161200-00",0.409814816579723,0.6002810564840211,-0.9873268952538471,"OS11G0161200",null,7.15067768735355,10.3315438694794,4.8947034191989705,3.92353037405298,"no","OS11G0161200","Os11g0161033 protein [Source:UniProtKB/TrEMBL;Acc:Q53PM1]","Similar to ATOZI1. (Os11t0161200-00)",11,2987096,2987410]
["OS06T0107700-01",0.41089308961853704,0.601114618939085,0.404600370142884,"OS06G0107700",null,94.7906145066323,176.015475043188,210.57793999371,147.894088713085,"no","OS06G0107700","Ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P41344]","Leaf-type ferredoxin-NADP+-oxidoreductase, Regulation of electron partitioning in the chloroplast (Os06t0107700-01)",6,479261,481572,"GO:0004324;GO:0009570;GO:0009579;GO:0009536;GO:0009535;GO:0009507;GO:0015979;GO:0055114;GO:0016491;GO:0016020","ferredoxin-NADP+ reductase activity;chloroplast stroma;thylakoid;plastid;chloroplast thylakoid membrane;chloroplast;photosynthesis;oxidation-reduction process;oxidoreductase activity;membrane","Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+. [EC:1.18.1.2, GOC:kd];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0156900-02",0.41167879003238206,0.601684385431942,0.22183466310576702,"OS08G0156900","SPO11-2",90.4203398064963,139.573572033323,146.975418317593,121.2470949989,"no","OS08G0156900","Meiotic recombination protein SPO11-2 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZD95]","Spo11/DNA topoisomerase VI, subunit A family protein. (Os08t0156900-01);Similar to Topoisomerase 6 subunit A. (Os08t0156900-02)",8,3301039,3304257,"GO:0000737;GO:0006259;GO:0005694;GO:0003677;GO:0005524;GO:0003824;GO:0000228;GO:0042138;GO:0007131;GO:0000706;GO:0016889;GO:0003918;GO:0046983;GO:0046872;GO:0016787;GO:0005634;GO:0009553;GO:0009555;GO:0048316;GO:0051026","DNA catabolic process, endonucleolytic;DNA metabolic process;chromosome;DNA binding;ATP binding;catalytic activity;nuclear chromosome;meiotic DNA double-strand break formation;reciprocal meiotic recombination;meiotic DNA double-strand break processing;endodeoxyribonuclease activity, producing 3'-phosphomonoesters;DNA topoisomerase type II (ATP-hydrolyzing) activity;protein dimerization activity;metal ion binding;hydrolase activity;nucleus;embryo sac development;pollen development;seed development;chiasma assembly","The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. [GOC:elh, GOC:mah];Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. [ISBN:0198506732];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact. [GOC:dph, GOC:mah];The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. [GOC:elh, GOC:jl, PMID:11529427];The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779];The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang occurs. This takes place during meiosis. [GOC:elh, PMID:9334324];Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. [GOC:ai];Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. [PMID:8811192];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids. [http://www.onelook.com]"]
["OS09T0499600-01",0.412569511849308,0.602216980551148,0.024196533920199298,"OS09G0499600",null,437.25993143382,406.58545404713,467.362726971797,390.75477991334,"no","OS09G0499600","Os09g0499600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0T2]","Protein of unknown function DUF659 domain containing protein. (Os09t0499600-01)",9,19335703,19339472,"GO:0042626;GO:0016021;GO:0005886;GO:0055085;GO:0046983;GO:0006810;GO:0016887;GO:0003676;GO:0003677;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;integral component of membrane;plasma membrane;transmembrane transport;protein dimerization activity;transport;ATPase activity;nucleic acid binding;DNA binding;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0824700-01",0.41276559897830506,0.602252642167738,-0.13761980640308,"OS02G0824700",null,2226.41392364109,2410.19163725067,1880.87179252546,2333.88444469188,"no","OS02G0824700","V-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:Q6KAA4]","Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit). (Os02t0824700-01)",2,35427553,35430580,"GO:0046961;GO:0016020;GO:0015992;GO:0015991;GO:0006810;GO:0006811;GO:0033180;GO:0042625;GO:0034220","proton-transporting ATPase activity, rotational mechanism;membrane;proton transport;ATP hydrolysis coupled proton transport;transport;ion transport;proton-transporting V-type ATPase, V1 domain;ATPase coupled ion transmembrane transporter activity;ion transmembrane transport","Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism. [EC:3.6.3.14];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:mah, GOC:vw];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. [GOC:mah, ISBN:0716743663, PMID:16449553];Catalysis of the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate. [EC:3.6.1.3, GOC:jl, GOC:mtg_transport, ISBN:0815340729];A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]"]
["OS02T0710700-00",0.413757328392216,0.60313535459893,-0.5166162345086981,"OS02G0710700",null,15.2888087913923,15.4399539511568,9.75705066746967,11.7226433974002,"no","OS02G0710700","Os02g0710700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KFZ1]","Hypothetical conserved gene. (Os02t0710700-00)",2,29438189,29440763,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0207400-01",0.41469451511120203,0.6038810636792661,-0.09989850187115101,"OS11G0207400",null,157.984357511054,127.636952662897,146.355760012045,120.157094823352,"no","OS11G0207400","Os11g0207400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSL3]","NB-ARC domain containing protein. (Os11t0207400-01)",11,5467512,5469283,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS11T0129000-00",0.415456252049466,0.604429495838823,0.272799333671573,"OS11G0129000",null,793.459534818264,1151.30392667774,1327.13770609325,1022.42785874796,"no","OS11G0129000","Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A0P0XYA6]","Similar to Transparent testa 12 protein. (Os11t0129000-00)",11,1341435,1344785,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0825900-01",0.41681938736744506,0.6057129048216541,0.12187124217957301,"OS01G0825900",null,106.00240762032,103.962356604456,98.5462117414437,129.925964321185,"no","OS01G0825900","Os01g0825900 protein [Source:UniProtKB/TrEMBL;Acc:Q94D92]","Protein of unknown function Cys-rich family protein. (Os01t0825900-01)",1,35328778,35331207,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0467600-01",0.418006453601847,0.606668099467778,0.47877624276406705,"OS05G0467600",null,44.8471724547508,17.4986144779778,49.7609584040953,37.1217040917673,"no","OS05G0467600","Os05g0467600 protein [Source:UniProtKB/TrEMBL;Acc:B9FKN7]","Conserved hypothetical protein. (Os05t0467600-01)",5,22955315,22960812]
["OS02T0773500-01",0.41905223754340204,0.6076024843631961,0.743200724271307,"OS02G0773500",null,7.1347774359830805,1.02933026341046,8.7813456007227,4.88443474891674,"no","OS02G0773500","Os02g0773500 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z7L7]","Protein of unknown function DUF3464 domain containing protein. (Os02t0773500-01)",2,32663482,32664208,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0684800-01",0.41928206766570103,0.6077958688234251,0.261414236918293,"OS07G0684800",null,244.15416568976,188.660652061659,224.716558330761,294.078281051648,"no","OS07G0684800","NAC transcription factor 15 [Source:UniProtKB/TrEMBL;Acc:Q6Z4N0]","Similar to NAM / CUC2-like protein. (Os07t0684800-01);Similar to NAM / CUC2-like protein. (Os07t0684800-02)",7,29040452,29042297,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0273900-00",0.42051659742102204,0.6089786739539781,-0.206405409996257,"OS12G0273900",null,56.0589655684385,68.9651276485006,63.4208293385528,44.9367996900341,"no","OS12G0273900","Os12g0273900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8Y6]","Leucine-rich repeat domain containing protein. (Os12t0273900-00)",12,10058775,10061686,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0400200-01",0.42159057641032205,0.609811347906835,-0.880561603046158,"OS09G0400200",null,32.4664058199005,16.7344328579021,9.28260293876322,17.441125523413,"no","OS09G0400200","Os09g0400200 protein [Source:UniProtKB/TrEMBL;Acc:Q0J1Z6]","Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195). (Os09t0400200-01)",9,13994443,13996457]
["OS12T0506600-01",0.42235985722172703,0.610201842239476,0.651018870913183,"OS12G0506600",null,18.2479163595975,17.5119964177576,38.1022191806078,18.0507413989285,"no","OS12G0506600","Os12g0506600 protein [Source:UniProtKB/TrEMBL;Acc:C7JA19]","Hypothetical protein. (Os12t0506600-01)",12,19429189,19431223,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0301200-02",0.42364629287346606,0.611453209555467,0.26433192197030403,"OS07G0301200",null,421.509408719119,420.278796681218,601.192536927369,409.862212729905,"no","OS07G0301200","DEAD-box ATP-dependent RNA helicase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6YS30]","Similar to RNA helicase (Fragment). (Os07t0301200-01);Similar to STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP-dependent helicase. (Os07t0301200-02)",7,11887215,11894422,"GO:0003676;GO:0005524;GO:0005730;GO:0010501;GO:0004004;GO:0005737;GO:0042254;GO:0006364;GO:0003723;GO:0004386;GO:0016787;GO:0005634;GO:0000166;GO:0005829","nucleic acid binding;ATP binding;nucleolus;RNA secondary structure unwinding;ATP-dependent RNA helicase activity;cytoplasm;ribosome biogenesis;rRNA processing;RNA binding;helicase activity;hydrolase activity;nucleus;nucleotide binding;cytosol","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];The process in which a secondary structure of RNA are broken or 'melted'. [PMID:17169986];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0222700-02",0.42413379342122903,0.6119833596205441,1.65004424056773,"OS01G0222700",null,9.94192521228761,10.4514652957717,28.6095669808171,35.3937152434146,"no","OS01G0222700","Os01g0222700 protein [Source:UniProtKB/TrEMBL;Acc:Q0JPH5]","Protein of unknown function DUF659 domain containing protein. (Os01t0222700-01);Protein of unknown function DUF659 domain containing protein. (Os01t0222700-02)",1,6705859,6710552,"GO:0046983;GO:0003723;GO:0003676;GO:0003677","protein dimerization activity;RNA binding;nucleic acid binding;DNA binding","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS10T0421800-01",0.425551539160327,0.613333834532801,0.270423947714831,"OS10G0421800",null,53.00120381016,36.026559219366,62.4451242718059,44.9367996900341,"no","OS10G0421800","Pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G31850) UniProtKB/Swiss-Prot;Acc:Q9SZ52]","Pentatricopeptide repeat domain containing protein. (Os10t0421800-01)",10,14897744,14900931,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0003676","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;nucleic acid binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS01T0172400-02",0.42656787163254806,0.6141029056332951,2.70127797698156,"OS01G0172400","PLD1",147.459239773892,105.867015208538,1355.34995357148,292.227728939072,"no","OS01G0172400","Phospholipase D alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q43007]","Similar to Phospholipase D alpha 1. (Os01t0172400-01);Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1). (Os01t0172400-02);Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1). (Os01t0172400-03);Similar to Phospholipase D alpha 1. (Os01t0172400-04);Similar to Phospholipase D alpha 1. (Os01t0172400-05)",1,3724667,3728791,"GO:0003824;GO:0070290;GO:0004630;GO:0016042;GO:0046470;GO:0006629;GO:0005509;GO:0016787;GO:0016020","catalytic activity;N-acylphosphatidylethanolamine-specific phospholipase D activity;phospholipase D activity;lipid catabolic process;phosphatidylcholine metabolic process;lipid metabolic process;calcium ion binding;hydrolase activity;membrane","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the release of N-acylethanolamine from N-acyl-phosphatidylethanolamine (NAPE) to generate N-acylethanolamine (NAE). [GOC:elh, PMID:14634025, PMID:15878693];Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. [EC:3.1.4.4];The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators];The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. [ISBN:0198506732];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0553901-01",0.42702567748401105,0.614443955093086,1.00656806792431,"OS01G0553901",null,4.98857670153192,3.51536140580786,8.3575596391093,8.72792379984765,"no","OS01G0553901","Os01g0553901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V491]","HGWP repeat domain containing protein. (Os01t0553901-01)",1,20838837,20842954,"GO:0055114;GO:0016020;GO:0016021","oxidation-reduction process;membrane;integral component of membrane","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0610550-00",0.42885705222277504,0.6161768689188061,1.2279267178363,"OS06G0610550",null,4.37793311847795,1.69552497439279,5.73154480486994,8.49432447627341,"no","OS06G0610550","Os06g0610550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WYZ9]","Hypothetical protein. (Os06t0610550-00)",6,24332650,24338625]
["OS08T0106600-00",0.42989851520617206,0.616950511371083,-0.243799052514164,"OS08G0106600",null,40.7701567770462,49.4078526437019,33.1739722693969,42.9830257904674,"no","OS08G0106600","Os08g0106600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XAY3]","Hypothetical conserved gene. (Os08t0106600-00)",8,328874,330017]
["OS05T0437200-01",0.430124055909591,0.617129245616128,-0.059937808727043795,"OS05G0437200",null,655.761265556467,797.933940137392,688.28886850184,706.248896783042,"no","OS05G0437200","Os05g0437200 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKN3]","Protein of unknown function DUF502 family protein. (Os05t0437200-01);Protein of unknown function DUF502 family protein. (Os05t0437200-02)",5,21410157,21414350,"GO:0005794;GO:0016020;GO:0016021","Golgi apparatus;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0458900-00",0.43086207670355103,0.617579083624063,-0.7307897185574781,"OS10G0458900",null,11.2117931136877,8.23464210728365,3.90282026698787,7.81509559826679,"no","OS10G0458900","Exostosin family protein [Source:UniProtKB/TrEMBL;Acc:Q94LT2]","Exostosin-like family protein. (Os10t0458900-00)",10,16852034,16853554,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0102200-01",0.43246871750627,0.6191294131402291,0.40827440644282803,"OS02G0102200",null,22.2374495726837,13.494500013996,20.6818783556167,26.7379038945571,"no","OS02G0102200","Os02g0102200 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU84]","Similar to Transmembrane amino acid transporter protein. (Os02t0102200-01)",2,119391,121684,"GO:0003333;GO:0015171;GO:0005886;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;plasma membrane;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0756600-01",0.433509565806841,0.62000675285697,-0.034468425535179,"OS01G0756600",null,2201.21023539973,2508.94903962205,2355.62472420403,2243.3345438914,"no","OS01G0756600","Os01g0756600 protein [Source:UniProtKB/TrEMBL;Acc:Q8S0T6]","Protein of unknown function DUF642 family protein. (Os01t0756600-01)",1,31749292,31753362]
["OS08T0530300-01",0.43447179326343305,0.620685599353988,0.0193193545183218,"OS08G0530300",null,115.175692895155,96.7570447605829,103.424737075178,111.365112275302,"no","OS08G0530300","Os08g0530300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZI99]","Exo70 exocyst complex subunit family protein. (Os08t0530300-01)",8,26413741,26416008,"GO:0000145;GO:0006887","exocyst;exocytosis","A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. [GOC:cilia, PMID:15292201, PMID:27243008, PMID:9700152];A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. [GOC:mah, ISBN:0716731363, PMID:22323285]"]
["OS07T0664000-00",0.434759083443423,0.62092181737862,0.6991394703611421,"OS07G0664000",null,8.84077902687828,2.12450938425381,11.5535838559607,6.24895780609699,"no","OS07G0664000","Os07g0664000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XA14]","Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os07t0664000-00)",7,28020795,28021694]
["OS02T0576600-01",0.43594044837557,0.622027488266879,1.02946028915888,"OS02G0576600","SUT5",3.05776175827846,4.11732105364182,5.8542304004818,8.79198254805014,"no","OS02G0576600","Sucrose transport protein SUT5 [Source:UniProtKB/Swiss-Prot;Acc:Q69JW3]","Sucrose transporter. (Os02t0576600-01)",2,22146429,22150147,"GO:0005887;GO:0008643;GO:0055085;GO:0005886;GO:0006810;GO:0042948;GO:0015770;GO:0015768;GO:0005985;GO:0042950;GO:0015293;GO:0008515;GO:0008506;GO:0005364;GO:0016020;GO:0016021;GO:0042951;GO:0042949","integral component of plasma membrane;carbohydrate transport;transmembrane transport;plasma membrane;transport;salicin transport;sucrose transport;maltose transport;sucrose metabolic process;salicin transmembrane transporter activity;symporter activity;sucrose transmembrane transporter activity;sucrose:proton symporter activity;maltose:proton symporter activity;membrane;integral component of membrane;arbutin transmembrane transporter activity;arbutin transport","The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:17814, GOC:jl];The directed movement of sucrose into, out of or within a cell, or between cells by means of some agent such as a transporter or pore. Sucrose is the disaccharide fructofuranosyl-glucopyranoside. [GOC:ai];The directed movement of maltose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the catabolism of glycogen and starch. [GOC:ai];The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];Enables the transfer of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, from one side of the membrane to the other. [CHEBI:17814, GOC:jl, GOC:mtg_transport, ISBN:0815340729];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the transfer of sucrose from one side of the membrane to the other. Sucrose is the disaccharide O-beta-D-fructofuranosyl-(2->1)-alpha-D-glucopyranoside, a sweet-tasting, non-reducing sugar isolated industrially from sugar beet or sugar cane. [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sucrose(out) + H+(out) = sucrose(in) + H+(in). [TC:2.A.1.5.3];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: maltose(out) + H+(out) = maltose(in) + H+(in). [TC:2.A.1.1.10];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, from one side of the membrane to the other. [GOC:jl, GOC:mtg_transport, http://biotech.icmb.utexas.edu/, ISBN:0815340729];The directed movement of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl, http://biotech.icmb.utexas.edu/]"]
["OS08T0526200-01",0.43729799032605904,0.623207771267925,-0.48673669954407905,"OS08G0526200",null,35.309239700502,33.1349614228253,0,48.8443474891674,"no","OS08G0526200","Os08g0526200 protein [Source:UniProtKB/TrEMBL;Acc:Q0J4A5]","Conserved hypothetical protein. (Os08t0526200-01);Conserved hypothetical protein. (Os08t0526200-02)",8,26174083,26176027]
["OS02T0723600-00",0.43811397106548705,0.6236724463699921,0.6890320240714021,"OS02G0723600",null,4.42526954439232,8.68525660718923,11.6191556408663,9.51765362128545,"no","OS02G0723600","Os02g0723600 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z5L9]","Similar to RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed. (Os02t0723600-00)",2,30067771,30071645,"GO:0005736;GO:0005666;GO:0006383;GO:0006360;GO:0001056;GO:0001054;GO:0003899;GO:0046983;GO:0006351;GO:0003677","DNA-directed RNA polymerase I complex;DNA-directed RNA polymerase III complex;transcription from RNA polymerase III promoter;transcription from RNA polymerase I promoter;RNA polymerase III activity;RNA polymerase I activity;DNA-directed 5'-3' RNA polymerase activity;protein dimerization activity;transcription, DNA-templated;DNA binding","RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. [GOC:jl, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0125650-01",0.43885602168640203,0.6241526798185151,0.0188618754513704,"OS03G0125650",null,96.9516344072918,89.777833162116,95.5421138570893,93.6446938872219,"no","OS03G0125650","Os03g0125650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VSF0]","Hypothetical gene. (Os03t0125650-01)",3,1462415,1466140]
["OS03T0128200-01",0.43958723128908805,0.624564801494363,-0.0426190816049979,"OS03G0128200",null,142.695548719662,133.812934243359,152.209990412527,116.249547024219,"no","OS03G0128200","Os03g0128200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VSN8]","Similar to predicted protein. (Os03t0128200-01)",3,1594653,1602046,"GO:0000148;GO:0006075;GO:0003843;GO:0016020;GO:0016021;GO:0016740","1,3-beta-D-glucan synthase complex;(1->3)-beta-D-glucan biosynthetic process;1,3-beta-D-glucan synthase activity;membrane;integral component of membrane;transferase activity","A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain. [EC:2.4.1.34];The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. [GOC:ai];Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). [EC:2.4.1.34];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0228600-01",0.44082710996843705,0.625610826075608,0.9524585518254971,"OS11G0228600",null,27.0545316956026,5.78446599741855,47.724482167642,15.8244835875341,"no","OS11G0228600","Os11g0228600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y0R7]","Similar to NB-ARC domain containing protein, expressed. (Os11t0228600-01)",11,6827133,6839374,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS12T0117600-01",0.44116471974001203,0.625944574257968,-0.043607317467752496,"OS12G0117600",null,108.260593798415,130.584449527519,123.573033412689,108.160627345373,"no","OS12G0117600","Os12g0117600 protein [Source:UniProtKB/TrEMBL;Acc:Q2QYI7]","BTB domain containing protein. (Os12t0117600-01)",12,865229,869553]
["OS04T0198733-00",0.442239657969805,0.62674209250828,0.00797883782522186,"OS04G0198733",null,98.867630184337,88.5224026532992,90.7405712074679,97.6886949783349,"no","OS04G0198733","Os04g0198733 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7B5]","Hypothetical conserved gene. (Os04t0198733-00)",4,6692156,6693010]
["OS06T0639100-04",0.44350760694352,0.6278730356690221,-0.00678719427900317,"OS06G0639100",null,1750.0601407906,1707.69934888841,1882.96587591383,1558.56470384484,"no","OS06G0639100","Probable E3 ubiquitin ligase SUD1 [Source:Projected from Arabidopsis thaliana (AT4G34100) UniProtKB/Swiss-Prot;Acc:F4JKK0]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0639100-01);Similar to protein binding / zinc ion binding. (Os06t0639100-02);Similar to protein binding / zinc ion binding. (Os06t0639100-03);Similar to predicted protein. (Os06t0639100-04);Similar to predicted protein. (Os06t0639100-05)",6,25968017,25974644,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0016020;GO:0016021;GO:0030176;GO:1904264;GO:0030433;GO:0046872;GO:0008270;GO:0008299;GO:0009414;GO:0010025;GO:0010143;GO:0010345;GO:0042335;GO:1900490","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;membrane;integral component of membrane;integral component of endoplasmic reticulum membrane;ubiquitin protein ligase activity involved in ERAD pathway;ubiquitin-dependent ERAD pathway;metal ion binding;zinc ion binding;isoprenoid biosynthetic process;response to water deprivation;wax biosynthetic process;cutin biosynthetic process;suberin biosynthetic process;cuticle development;positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];Any ubiquitin protein ligase activity that is involved in the ERAD pathway (the targeting of endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome). [GO_REF:0000061, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:23990462];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:0943088399];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262];The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:0192800825];Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]"]
["OS09T0423800-01",0.444231860547712,0.628224949243366,-0.10981494337417301,"OS09G0423800",null,153.904590920646,113.634987121676,130.337423245232,117.593356260021,"no","OS09G0423800","Os09g0423800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J1N6]","Similar to AP2-1 protein (Fragment). (Os09t0423800-01)",9,15364933,15369587,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0307466-01",0.44562003539716105,0.629478248068012,0.218768924880886,"OS04G0307466",null,41.5520158385278,35.8802103263455,47.3069103552772,42.8040781469422,"no","OS04G0307466","Os04g0307466 protein [Source:UniProtKB/TrEMBL;Acc:C7J185]","Conserved hypothetical protein. (Os04t0307466-01)",4,13862793,13869259]
["OS01T0654100-03",0.44575568584399505,0.6295930707736921,-0.175051284390067,"OS01G0654100",null,748.941557634657,894.305321874356,641.383783507952,814.099188337123,"no","OS01G0654100","CTP synthase [Source:UniProtKB/TrEMBL;Acc:Q5VPD3]","Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase). (Os01t0654100-01);CTP synthase domain containing protein. (Os01t0654100-02);Similar to CTP synthase. (Os01t0654100-03)",1,26514543,26521761,"GO:0006241;GO:0003883;GO:0006221;GO:0044210;GO:0006541;GO:0016874;GO:0005524;GO:0000166","CTP biosynthetic process;CTP synthase activity;pyrimidine nucleotide biosynthetic process;'de novo' CTP biosynthetic process;glutamine metabolic process;ligase activity;ATP binding;nucleotide binding","The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. [ISBN:0198506732];Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. [EC:6.3.4.2];The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cytidine 5'-triphosphate (CTP) from simpler components. [GOC:ecd, GOC:jl, PMID:11912132, PMID:18439916];The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid. [GOC:ai];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS01T0772200-01",0.44681588881306705,0.630389356321563,-0.278086563302955,"OS01G0772200",null,103.036342102437,142.853702009965,110.375197621056,92.4064035415953,"no","OS01G0772200","Os01g0772200 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8X8]","Transcription initiation factor IIF, beta subunit family protein. (Os01t0772200-01);Transcription initiation factor IIF, beta subunit domain containing protein. (Os01t0772200-02)",1,32598084,32601804,"GO:0000991;GO:0032968;GO:0005674;GO:0006366;GO:0003743;GO:0006413;GO:0006367;GO:0060261","transcription factor activity, core RNA polymerase II binding;positive regulation of transcription elongation from RNA polymerase II promoter;transcription factor TFIIF complex;transcription from RNA polymerase II promoter;translation initiation factor activity;translational initiation;transcription initiation from RNA polymerase II promoter;positive regulation of transcription initiation from RNA polymerase II promoter","Interacting selectively and non-covalently with an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. [GOC:txnOH];Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation. [GOC:jl, PMID:7597077];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. [GOC:mah, GOC:txnOH];Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter. [GOC:dph, GOC:tb, GOC:txnOH]"]
["OS01T0698300-01",0.44813556151445305,0.6314374007961121,0.097330601763999,"OS01G0698300",null,150.036303153703,130.857803552317,143.625821194263,156.872505646565,"no","OS01G0698300","Os01g0698300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JK40]","Zinc finger, BED-type predicted domain containing protein. (Os01t0698300-01);Similar to transposon protein. (Os01t0698300-02)",1,28892894,28897236,"GO:0046983;GO:0003676;GO:0003677;GO:0005634;GO:0006357;GO:0003700;GO:0000977","protein dimerization activity;nucleic acid binding;DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;transcription factor activity, sequence-specific DNA binding;RNA polymerase II regulatory region sequence-specific DNA binding","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH]"]
["OS10T0496900-01",0.44901730770531706,0.632154130455409,-0.47311854699854405,"OS10G0496900",null,114.317878648551,214.721360063592,135.631234091498,101.410501063763,"no","OS10G0496900","Os10g0496900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XW83]","Similar to Protochlorophyllide reductase B, chloroplastic. (Os10t0496900-01);NADPH: protochlorophyllide oxidoreductase, Chlorophyll synthesis (Os10t0496900-02)",10,18900302,18904014,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0178601-00",0.450462356784028,0.63345880164161,0.5901224573372941,"OS06G0178601",null,10.744590299812,4.90771841784786,15.406999374761,8.15558734202667,"no","OS06G0178601","Os06g0176801 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT22]","Hypothetical protein. (Os06t0178601-00)",6,3896429,3898528]
["OS12T0145900-01",0.451758749293922,0.634668382233315,-0.278207405131685,"OS12G0145900",null,29.5583636633585,39.1145500095973,25.3683317354211,31.2603823930672,"no","OS12G0145900","Leucine-rich repeat receptor-like protein kinase PXC1 [Source:Projected from Arabidopsis thaliana (AT2G36570) UniProtKB/Swiss-Prot;Acc:Q9SJQ1]","Similar to Leucine Rich Repeat family protein, expressed. (Os12t0145900-01)",12,2251302,2254010,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0009834;GO:0005886","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;plant-type secondary cell wall biogenesis;plasma membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS06T0111300-00",0.45208363840806703,0.634920443166464,0.09098000470535769,"OS06G0111300",null,74.4055361181093,82.3464210728365,76.1049952062634,90.8504863298514,"no","OS06G0111300","Os06g0111300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WS22]","Hypothetical conserved gene. (Os06t0111300-00)",6,629986,633799,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS11T0679900-01",0.45315389782689103,0.635897385927208,-0.0977484162802415,"OS11G0679900",null,98.867630184337,115.284989501971,114.157492809395,85.9660515809347,"no","OS11G0679900","Os11g0679900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y596]","Conserved hypothetical protein. (Os11t0679900-01)",11,27492119,27495458,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0707500-01",0.45421775058929503,0.636582934714881,0.37221159406965904,"OS01G0707500",null,22.9757293386412,23.5357235323132,35.0920839135881,25.109339547489,"no","OS01G0707500","BHLH transcription factor-like [Source:UniProtKB/TrEMBL;Acc:Q8S0N2]","Similar to Transcription factor LAX PANICLE. (Os01t0707500-01);Similar to Transcription factor LAX PANICLE. (Os01t0707500-02);Non-protein coding transcript. (Os01t0707500-03)",1,29382708,29385646,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS04T0649700-04",0.45521457053261,0.63732543116636,-0.0290376575110232,"OS04G0649700",null,128.717606764097,165.421103929135,151.715482641698,136.562170959668,"no","OS04G0649700","OSJNBb0059K02.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XMQ6]","Serine/threonine protein kinase-related domain containing protein. (Os04t0649700-01);Serine/threonine protein kinase-related domain containing protein. (Os04t0649700-02);Similar to H0212B02.5 protein. (Os04t0649700-03);Similar to H0212B02.5 protein. (Os04t0649700-04);Similar to H0212B02.5 protein. (Os04t0649700-05)",4,33109718,33113326,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0016310;GO:0016301","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;phosphorylation;kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS10T0370800-02",0.45612237173742404,0.6379824521046461,-0.128969254437713,"OS10G0370800",null,3087.37029030537,3539.74940350874,2770.97677630287,3289.42198062007,"no","OS10G0370800","Cellulase containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8RU51]","Similar to Exo-1,3-beta-glucanase precursor (EC 3.2.1.58) (Fragment). (Os10t0370800-01);Similar to cellulase containing protein. (Os10t0370800-02)",10,11698993,11713558,"GO:0005737;GO:0007015;GO:0051015;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0051017;GO:0007163;GO:0016477;GO:0031941;GO:0030674","cytoplasm;actin filament organization;actin filament binding;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;actin filament bundle assembly;establishment or maintenance of cell polarity;cell migration;filamentous actin;protein binding, bridging","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah];Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. [GOC:ai];Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns. [GOC:mah];The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms. [GOC:cjm, GOC:dph, GOC:ems, GOC:pf, http://en.wikipedia.org/wiki/Cell_migration];A two-stranded helical polymer of the protein actin. [GOC:mah];The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way. [GOC:bf, GOC:mah, GOC:vw]"]
["OS02T0154600-02",0.457540563369139,0.639222326084399,0.783693950814735,"OS02G0154600",null,14.485070285074,83.4306000645695,115.84058930718,52.7244818156402,"no","OS02G0154600","Os02g0154600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VF13]","Domain of unknown function DUF250 domain containing protein. (Os02t0154600-01);Domain of unknown function DUF250 domain containing protein. (Os02t0154600-02)",2,2995581,3001388,"GO:0005794;GO:0015780;GO:0016020;GO:0016021","Golgi apparatus;nucleotide-sugar transport;membrane;integral component of membrane","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0526300-03",0.45764995157557703,0.6392282312156471,-0.0348040640790944,"OS08G0526300",null,383.572621506065,461.591450700369,435.737286823344,389.28173094725,"no","OS08G0526300","Os08g0526300 protein [Source:UniProtKB/TrEMBL;Acc:Q7F1E4]","Similar to cDNA clone:001-038-D09, full insert sequence. (Os08t0526300-01);tRNA-binding arm domain containing protein. (Os08t0526300-02);tRNA-binding arm domain containing protein. (Os08t0526300-03)",8,26176387,26185117,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS01T0640800-01",0.45897217278950003,0.640460767193312,0.0400830942506349,"OS01G0640800",null,103.963899781468,116.314319765382,126.841658677106,99.6424688779016,"no","OS01G0640800","Os01g0640800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JKY3]","Similar to radical SAM domain-containing protein. (Os01t0640800-01)",1,25752298,25755783,"GO:0070475;GO:0030488;GO:0006364;GO:0008173;GO:0005737;GO:0051536;GO:0008649;GO:0008175;GO:0003824","rRNA base methylation;tRNA methylation;rRNA processing;RNA methyltransferase activity;cytoplasm;iron-sulfur cluster binding;rRNA methyltransferase activity;tRNA methyltransferase activity;catalytic activity","The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule. [GOC:mah];The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah];Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. [GOC:mah];Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule. [GOC:mah];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0172600-00",0.45993366090097704,0.641017039169938,0.0994643648500302,"OS07G0172600",null,59.1167273267169,56.6131644875751,61.4694192050589,62.5207647861343,"no","OS07G0172600","Pentatricopeptide repeat-containing protein At5g03800 [Source:Projected from Arabidopsis thaliana (AT5G03800) UniProtKB/Swiss-Prot;Acc:Q9FFN1]","Pentatricopeptide repeat domain containing protein. (Os07t0172600-00)",7,3817978,3820720,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270;GO:0009793","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding;embryo development ending in seed dormancy","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]"]
["OS07T0665200-01",0.460663322503204,0.641512520055123,0.0898466081378129,"OS07G0665200",null,5635.45492050721,5568.67672505057,5485.41388525145,6438.66188602205,"no","OS07G0665200",null,"Similar to Superoxide dismutase [Cu-Zn]. (Os07t0665200-01)",7,28075600,28077583,"GO:0004784;GO:0016209;GO:0005615;GO:0005737;GO:0008270;GO:0005507;GO:0019430;GO:0006801;GO:0046872;GO:0055114;GO:0016491;GO:0098869","superoxide dismutase activity;antioxidant activity;extracellular space;cytoplasm;zinc ion binding;copper ion binding;removal of superoxide radicals;superoxide metabolic process;metal ion binding;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification","Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. [EC:1.15.1.1, GOC:vw, PMID:15064408];Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage. [ISBN:0198506732];That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). [CHEBI:18421, GOC:jl];The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. [CHEBI:18421, GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS06T0548100-00",0.461646465281532,0.642122595369059,-0.11505364592012302,"OS06G0548100",null,117.214200734008,110.138338184919,86.83775094048,123.087755672702,"no","OS06G0548100","Os06g0548100 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z7I6]","Similar to Nectarin 5 (Fragment). (Os06t0548100-00)",6,20735880,20737650,"GO:0016614;GO:0050660;GO:0016491;GO:0055114;GO:0003824","oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0908001-01",0.46196255001968806,0.6423879775787711,0.14922168374247802,"OS01G0908001",null,47.8416736875973,66.469497331107,63.96712921775,62.8006483506977,"no","OS01G0908001","Os01g0908001 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VBT2]","Hypothetical gene. (Os01t0908001-01)",1,39534694,39538174]
["OS06T0698812-00",0.46254491998592,0.642564274285598,0.907182676552111,"OS06G0698812",null,6.74282544279684,1.6842891834318698,7.62765296739092,8.1763862409838,"no","OS06G0698812","Os06g0698812 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0V5]","Disease resistance protein domain containing protein. (Os06t0698812-00)",6,29355252,29356136,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS08T0551300-00",0.46382101549490806,0.6434215679620251,0.428877104689299,"OS08G0551300",null,12.2310470331138,17.4986144779778,25.3683317354211,14.6533042467502,"no","OS08G0551300","Os08g0551300 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3H6]","Protein of unknown function DUF241, plant family protein. (Os08t0551300-00)",8,27643356,27644156]
["OS01T0708300-02",0.46435598905275505,0.643768482578284,-0.33419514653085103,"OS01G0708300",null,52.4086323113753,38.0214879823986,34.3426990098688,37.3888724165651,"no","OS01G0708300","Probable magnesium transporter [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7A0]","Protein of unknown function DUF803 domain containing protein. (Os01t0708300-01);Similar to predicted protein. (Os01t0708300-02)",1,29423549,29427813,"GO:0016020;GO:0005886;GO:0005769;GO:0005768;GO:1903830;GO:0015693;GO:0015095;GO:0006810;GO:0006811;GO:0016021","membrane;plasma membrane;early endosome;endosome;magnesium ion transmembrane transport;magnesium ion transport;magnesium ion transmembrane transporter activity;transport;ion transport;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways. [GOC:mah, NIF_Subcellular:nlx_subcell_20090701, PMID:19696797];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];The directed movement of magnesium ion across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:11254124];The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. [GOC:dgf];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0563800-01",0.465569763972406,0.64476168029033,-0.7517257855756351,"OS02G0563800",null,11.4726122984567,34.7580916220319,27.4560777620801,0,"no","OS02G0563800","Os02g0563800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z7F7]","Cyclin-like F-box domain containing protein. (Os02t0563800-01);Cyclin-like F-box domain containing protein. (Os02t0563800-02)",2,21396354,21399727,"GO:0031146;GO:0004842;GO:0016567","SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;ubiquitin-protein transferase activity;protein ubiquitination","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS12T0161700-01",0.466064382852907,0.644960004771648,-0.191558080706547,"OS12G0161700",null,44.8471724547508,56.6131644875751,42.9310229368665,45.9136866398174,"no","OS12G0161700","Os12g0161700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y781]","Conserved hypothetical protein. (Os12t0161700-01)",12,3100851,3110416]
["OS04T0650366-00",0.46706189075558,0.6454238041686411,-0.375845185325195,"OS04G0650366",null,150.519011236338,95.0044013390934,108.065928744029,81.1476227070034,"no","OS04G0650366","Glycosyltransferases [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFS1]","Similar to H0212B02.9 protein. (Os04t0650366-00)",4,33138559,33140012,"GO:0000139;GO:0016757;GO:0016020;GO:0016021;GO:0005794;GO:0071555;GO:0016740;GO:0015018;GO:0042285;GO:0009834;GO:0010417","Golgi membrane;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;Golgi apparatus;cell wall organization;transferase activity;galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity;xylosyltransferase activity;plant-type secondary cell wall biogenesis;glucuronoxylan biosynthetic process","The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein. [EC:2.4.1.135];Catalysis of the transfer of a xylosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [GOC:ai];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues. [GOC:tair_curators]"]
["OS10T0169800-01",0.46725268443132506,0.645570660459722,-0.0896053995261687,"OS10G0169800",null,1594.11312998251,1843.53050176813,1561.12810679515,1669.49979717974,"no","OS10G0169800","Esterase/lipase/thioesterase family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q33AQ0]","Alpha/beta hydrolase fold-1 domain containing protein. (Os10t0169800-01)",10,4783249,4788696,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0265400-01",0.46833936328117703,0.646341323830812,0.567662133617405,"OS06G0265400","TGAL3",9.30981460152331,9.44422504840672,16.5869861346984,11.2087486700053,"no","OS06G0265400","Transcription factor TGAL3 [Source:UniProtKB/Swiss-Prot;Acc:Q5Z6N9]","Similar to Transcription factor HBP-1b(C38) (Fragment). (Os06t0265400-01)",6,8785882,8788413,"GO:0006952;GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","defense response;transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS06T0534800-01",0.469143414339091,0.6468376323811621,0.662774821182884,"OS06G0534800",null,151.868715897789,27.660911442194,130.744477899122,153.473294283102,"no","OS06G0534800","EL5-like [Source:UniProtKB/TrEMBL;Acc:Q5Z5G0]","Zinc finger, RING-type domain containing protein. (Os06t0534800-01);Zinc finger, RING-type domain containing protein. (Os06t0534800-02)",6,20010528,20012036,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0178100-01",0.470294270570192,0.6477254776823941,0.0552316860254019,"OS02G0178100",null,88.9379874244436,120.431640819023,104.852686598874,112.687790223219,"no","OS02G0178100","Os02g0178100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFH3]","Similar to CONSTANS-like protein CO6. (Os02t0178100-01)",2,4315391,4316956,"GO:0009909;GO:0009416;GO:0005634;GO:0005622;GO:0008270","regulation of flower development;response to light stimulus;nucleus;intracellular;zinc ion binding","Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0592200-02",0.47134942604905206,0.648561865639103,0.150813408305135,"OS07G0592200",null,504.790097825941,388.395635672782,517.307780984803,474.302765814857,"no","OS07G0592200","Os07g0592200 protein [Source:UniProtKB/TrEMBL;Acc:Q84RX6]","Aspartic protease, Pollen germination and pollen tube growth (Os07t0592200-02);Similar to predicted protein. (Os07t0592200-03)",7,24129716,24137325,"GO:0004190;GO:0006508;GO:0016020;GO:0016021;GO:0030163;GO:0016787;GO:0008233","aspartic-type endopeptidase activity;proteolysis;membrane;integral component of membrane;protein catabolic process;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS05T0461600-01",0.471543282311752,0.6487408647385581,-0.206316966505826,"OS05G0461600",null,161.468389160542,221.468320974996,158.191684341248,173.71760416845,"no","OS05G0461600","Os05g0461600 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4Z9]","Similar to SIK1 protein (Nucleolar protein NOP56). (Os05t0461600-01)",5,22665339,22666001]
["OS02T0661000-00",0.47267621977109703,0.649509933725221,-0.16916478006505,"OS02G0661000",null,539.557431950196,582.470220485443,587.746147349961,410.137457488407,"no","OS02G0661000","Os02g0661000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KFT8]","Similar to peroxisomal biogenesis factor 19. (Os02t0661000-00)",2,26762824,26766482,"GO:0005778;GO:0005777;GO:0007031;GO:0033328","peroxisomal membrane;peroxisome;peroxisome organization;peroxisome membrane targeting sequence binding","The lipid bilayer surrounding a peroxisome. [GOC:mah];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah];Interacting selectively and non-covalently with a peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane. [GOC:rb, PMID:15133130, PMID:17020786]"]
["OS08T0363900-00",0.473643278443984,0.650224643586637,1.26523604441144,"OS08G0363900",null,4.50071051706374,3.82156437362106,10.3273221183102,9.6766415782753,"no","OS08G0363900","Os08g0363900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XF74]","Hypothetical conserved gene. (Os08t0363900-00)",8,16845951,16849354]
["OS12T0154900-00",0.474711548302081,0.650988310805627,-0.28819700937734405,"OS12G0154900",null,34.2963850123513,57.2795256207016,34.9721155447295,40.0216743153623,"no","OS12G0154900","Putative germin-like protein 12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q2QXJ1]","Germin-like protein 12-3, Disease resistance (Os12t0154900-00)",12,2696407,2697214,"GO:0005618;GO:0045735;GO:0030145;GO:0048046;GO:0046872;GO:0005576","cell wall;nutrient reservoir activity;manganese ion binding;apoplast;metal ion binding;extracellular region","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Functions in the storage of nutritious substrates. [GOC:ai];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0174100-01",0.475293443090789,0.6513193663740651,0.17944337021343,"OS02G0174100","SPL4",149.385690810724,103.48442235399,153.443683343819,132.918285618281,"no","OS02G0174100","SBP transcription factor [Source:UniProtKB/TrEMBL;Acc:B7EBQ0]","Similar to Isoform 2 of Squamosa promoter-binding-like protein 4. (Os02t0174100-01);SBP domain containing protein. (Os02t0174100-02);Similar to Isoform 2 of Squamosa promoter-binding-like protein 4. (Os02t0174100-03)",2,4073883,4077949,"GO:0046872;GO:0005634;GO:0003677;GO:0006355;GO:0006351","metal ion binding;nucleus;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0462300-00",0.47661432091445904,0.652222553640533,0.10280806575739,"OS02G0462300",null,55.0397116490123,65.8771368582692,64.3965344052998,65.4514256354844,"no","OS02G0462300","Os02g0462300 protein [Source:UniProtKB/TrEMBL;Acc:Q6K4Y9]","Hypothetical conserved gene. (Os02t0462300-00)",2,15502622,15503795,"GO:0004518;GO:0090305;GO:0016020;GO:0016021","nuclease activity;nucleic acid phosphodiester bond hydrolysis;membrane;integral component of membrane","Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0375700-01",0.476808041004028,0.652370768864982,0.22835499258090902,"OS09G0375700",null,31.1276776709023,36.8009462220433,44.1427890498972,35.4354856387138,"no","OS09G0375700","Os09g0375700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQP6]","Similar to H0616A11.2 protein. (Os09t0375700-01)",9,12572894,12576290,"GO:0015074;GO:0004190;GO:0006508;GO:0003676;GO:0008270","DNA integration;aspartic-type endopeptidase activity;proteolysis;nucleic acid binding;zinc ion binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS02T0268050-00",0.47791812858479,0.653103534005621,0.0556264228062206,"OS02G0268050",null,54.711068631989,63.8184763314483,63.1701078572975,60.0188663738805,"no","OS02G0268050","Os02g0268050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VHE0]","Similar to Expansin-A23. (Os02t0268050-00)",2,9578475,9579432,"GO:0005618;GO:0005576;GO:0009664;GO:0016020","cell wall;extracellular region;plant-type cell wall organization;membrane","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0168800-01",0.478537450761283,0.6535583350140121,-0.17518681626373803,"OS12G0168800",null,40.7701567770462,46.3198618534705,35.1253824028908,42.006138840684,"no","OS12G0168800","Os12g0168800 protein [Source:UniProtKB/TrEMBL;Acc:Q0IPT9]","Similar to AG-motif binding protein-2. (Os12t0168800-01)",12,3495956,3497682,"GO:0005667;GO:0001085;GO:0045944;GO:0001228;GO:0003682;GO:0006366;GO:0030154;GO:0005634;GO:0000977;GO:0003700;GO:0043565;GO:0006355;GO:0008270;GO:0016020;GO:0016021","transcription factor complex;RNA polymerase II transcription factor binding;positive regulation of transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;chromatin binding;transcription from RNA polymerase II promoter;cell differentiation;nucleus;RNA polymerase II regulatory region sequence-specific DNA binding;transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;zinc ion binding;membrane;integral component of membrane","A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. [GOC:jl];Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II. [GOC:txnOH];Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0107300-01",0.47975498670768,0.6543803242665971,-0.37292169576719303,"OS04G0107300",null,22.4235862273754,16.4692842145673,15.0015303509801,15.0322071365046,"no","OS04G0107300","OSJNBb0085F13.12 protein [Source:UniProtKB/TrEMBL;Acc:Q7XRA3]","NAD(P)-binding domain containing protein. (Os04t0107300-01)",4,446012,447110,"GO:0005829;GO:0051287;GO:0016616;GO:0055114;GO:0016491;GO:0008152;GO:0016618;GO:0030267","cytosol;NAD binding;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;metabolic process;hydroxypyruvate reductase activity;glyoxylate reductase (NADP) activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: D-glycerate + NADP+ = hydroxypyruvate + NADPH + H+. [EC:1.1.1.81];Catalysis of the reaction: glycolate + NADP+ = glyoxylate + NADPH + H+. [EC:1.1.1.79]"]
["OS11T0607900-01",0.48090506999076904,0.655295343494496,1.30621516360132,"OS11G0607900",null,21.3735636955276,10.7180751095904,13.7430944162837,65.6169387343292,"no","OS11G0607900","Os11g0607900 protein [Source:UniProtKB/TrEMBL;Acc:B9G0A1]","Hypothetical conserved gene. (Os11t0607900-01)",11,23459658,23475516,"GO:0030246;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672","carbohydrate binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS11T0150800-01",0.48130125249065603,0.6556883094235071,-0.157515713734104,"OS11G0150800",null,53.00120381016,68.9651276485006,49.7609584040953,59.5901039367843,"no","OS11G0150800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53PZ6]","Hypothetical protein. (Os11t0150800-01)",11,2363882,2364482]
["OS02T0118000-01",0.48217270656516403,0.6561097575490541,0.09478558005228101,"OS02G0118000",null,68.2900126015523,59.7011552778064,67.3236496055407,69.3589734346178,"no","OS02G0118000","Pentatricopeptide repeat-containing protein At2g01860 [Source:Projected from Arabidopsis thaliana (AT2G01860) UniProtKB/Swiss-Prot;Acc:Q5XET4]","Pentatricopeptide repeat domain containing protein. (Os02t0118000-01)",2,938375,941300,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS10T0512800-01",0.48335654480093,0.657122287044811,-0.0461066218790474,"OS10G0512800","KIN7K",2310.64863533909,2661.84806117944,2384.62318312959,2431.47161801076,"no","OS10G0512800","Kinesin-like protein KIN-7K, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FW70]","Similar to predicted protein. (Os10t0512800-01)",10,19756786,19768053,"GO:0042803;GO:0007018;GO:0016887;GO:0003777;GO:0043531;GO:0005871;GO:0003774;GO:0005874;GO:0000287;GO:0008017;GO:0009536;GO:0009507;GO:0046872;GO:0005524;GO:0000166","protein homodimerization activity;microtubule-based movement;ATPase activity;microtubule motor activity;ADP binding;kinesin complex;motor activity;microtubule;magnesium ion binding;microtubule binding;plastid;chloroplast;metal ion binding;ATP binding;nucleotide binding","Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work. [GOC:mah, http://www.proweb.org/kinesin//KinesinMotility.html, http://www.proweb.org/kinesin//KinesinStructure.html];Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. [GOC:mah, GOC:vw, ISBN:0815316194, PMID:11242086];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS01T0275900-00",0.48462218203966706,0.65811080565721,-0.0192324106672193,"OS01G0275900",null,407.624613249966,331.444344818167,373.695040564088,355.586849721139,"no","OS01G0275900","Os01g0275900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V1E9]","Hypothetical conserved gene. (Os01t0275900-00)",1,9644443,9647828]
["OS06T0232100-01",0.485700689638403,0.6589603210547761,-0.037108388012855896,"OS06G0232100",null,89.6823734292234,92.0501772296278,80.8182142572133,96.299493991125,"no","OS06G0232100","Os06g0232100 protein [Source:UniProtKB/TrEMBL;Acc:Q0DDD4]","Hypothetical conserved gene. (Os06t0232100-01);Protein kinase, core domain containing protein. (Os06t0232100-02);Hypothetical conserved gene. (Os06t0232100-03);Similar to predicted protein. (Os06t0232100-04)",6,6823036,6832862,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0006355;GO:0005524;GO:0004674;GO:0005886;GO:0048544;GO:0016020;GO:0016021;","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;regulation of transcription, DNA-templated;ATP binding;protein serine/threonine kinase activity;plasma membrane;recognition of pollen;membrane;integral component of membrane;","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS12T0114400-01",0.48689879799760105,0.659882378371286,-0.13271207342604102,"OS12G0114400",null,61.0801007568216,55.5838342241646,57.566598938071,48.8443474891674,"no","OS12G0114400","Os12g0114400 protein [Source:UniProtKB/TrEMBL;Acc:Q0IQL3]","Pentatricopeptide repeat domain containing protein. (Os12t0114400-01)",12,718564,722185,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS08T0377500-01",0.488204291064017,0.661040350120881,-0.16879154736687302,"OS08G0377500",null,712.29518216731,880.216098899696,637.107285458122,779.570874507087,"no","OS08G0377500","Os08g0377500 protein [Source:UniProtKB/TrEMBL;Acc:Q8GVU8]","Protein of unknown function DUF599 family protein. (Os08t0377500-01)",8,17730432,17731885,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0211200-01",0.488422479681607,0.661184970500795,0.0246869877167483,"OS11G0211200",null,116.3470143075,95.3558837416373,97.2844434251364,118.07222647559,"no","OS11G0211200","Os11g0211200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZZ8]","Similar to Tubulin-specific chaperon-like protein. (Os11t0211200-01)",11,5773790,5777594]
["OS05T0439200-01",0.48983480338660706,0.6623239651973051,-0.17791277373257902,"OS05G0439200",null,54.0204577295862,44.2612013266496,52.6880736043362,34.1910432424172,"no","OS05G0439200","Os05g0439200 protein [Source:UniProtKB/TrEMBL;Acc:Q0DHU5]","Hypothetical protein. (Os05t0439200-01)",5,21514406,21515207,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0162500-02",0.49122669973284105,0.663599139115571,0.12363066754162401,"OS07G0162500",null,58.0974734072908,56.6131644875751,55.6151888045771,69.3589734346178,"no","OS07G0162500","Os07g0162500 protein [Source:UniProtKB/TrEMBL;Acc:Q8GSE8]","Alpha/beta hydrolase fold-3 domain containing protein. (Os07t0162500-02)",7,3342219,3343596,"GO:0009056;GO:0016787;GO:0008152","catabolic process;hydrolase activity;metabolic process","The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. [ISBN:0198547684];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS03T0603500-00",0.49246092547519904,0.6644421120303521,0.0563316645770554,"OS03G0603500",null,88.6750909900754,69.994457911911,87.813456007227,77.1740690328846,"no","OS03G0603500","Os03g0603500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W0M6]","Conserved hypothetical protein. (Os03t0603500-00)",3,22612502,22614216,"GO:0005742","mitochondrial outer membrane translocase complex","A large complex of the mitochondrial outer membrane that mediates transport of proteins into all mitochondrial compartments. [PMID:12581629]"]
["OS10T0567000-02",0.49345615494100903,0.6652278189072981,-0.16348143298057902,"OS10G0567000",null,51.3085626381309,69.1915937455681,49.7841631126083,57.806552338492,"no","OS10G0567000","CrcB-like protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q108X7]","Camphor resistance CrcB protein family protein. (Os10t0567000-01);Hypothetical gene. (Os10t0567000-02)",10,22466999,22471342,"GO:0005887;GO:0016021;GO:1903424;GO:1903425;GO:0016020;GO:0005886","integral component of plasma membrane;integral component of membrane;fluoride transmembrane transport;fluoride transmembrane transporter activity;membrane;plasma membrane","The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of fluoride across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:24173035];Enables the transfer of fluoride from one side of the membrane to the other. [GO_REF:0000070, GOC:TermGenie, PMID:24173035];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS12T0224400-01",0.493489392711888,0.6652278189072981,0.0251429192896598,"OS12G0224400",null,83.5788213929446,68.9651276485006,81.9592256067452,73.2665212337512,"no","OS12G0224400","Os12g0224400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y876]","Similar to Exostosin family protein, expressed. (Os12t0224400-01)",12,6754961,6756761,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0235350-00",0.49454435266641106,0.6658707849631691,-0.0461391673987176,"OS01G0235350",null,63.1937430044216,63.8184763314483,60.4937141383119,62.5207647861343,"no","OS01G0235350","Os01g0235350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0A8]","Conserved hypothetical protein. (Os01t0235350-00)",1,7473271,7476621,"GO:0008536;GO:0006886;GO:0005634;GO:0016020;GO:0016021","Ran GTPase binding;intracellular protein transport;nucleus;membrane;integral component of membrane","Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0578000-01",0.49563302418368,0.666604162478421,-0.0366476344923714,"OS01G0578000",null,239.524671065146,250.127254008741,270.27030348891,207.10003335407,"no","OS01G0578000","DNA repair protein RAD51 homolog 3 [Source:Projected from Arabidopsis thaliana (AT2G45280) UniProtKB/Swiss-Prot;Acc:Q8GXF0]","DNA repair protein, DNA double-strand break repair, synaptonemal complex assembly (Os01t0578000-01);Splicing variant of DNA repair protein RAD51C (Os01t0578000-02);Splicing variant of DNA repair protein RAD51C (Os01t0578000-03)",1,22353427,22358405,"GO:0006281;GO:0008094;GO:0003677;GO:0005524;GO:0003690;GO:0006312;GO:0007131;GO:0042148;GO:0010212;GO:0000400;GO:0000150;GO:0004520;GO:0003697;GO:0000707;GO:0005657;GO:0033063;GO:0000724;GO:0007140;GO:0007143;GO:0016444;GO:0045003;GO:0007141","DNA repair;DNA-dependent ATPase activity;DNA binding;ATP binding;double-stranded DNA binding;mitotic recombination;reciprocal meiotic recombination;strand invasion;response to ionizing radiation;four-way junction DNA binding;recombinase activity;endodeoxyribonuclease activity;single-stranded DNA binding;meiotic DNA recombinase assembly;replication fork;Rad51B-Rad51C-Rad51D-XRCC2 complex;double-strand break repair via homologous recombination;male meiotic nuclear division;female meiotic nuclear division;somatic cell DNA recombination;double-strand break repair via synthesis-dependent strand annealing;male meiosis I","The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. [EC:3.6.1.3, GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with double-stranded DNA. [GOC:elh, GOC:vw];The exchange, reciprocal or nonreciprocal, of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. [GOC:elh];The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779];The process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. [GOC:elh, PMID:10357855];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays. [PMID:12509526];Interacting selectively and non-covalently with DNA containing four-way junctions, also known as Holliday junctions, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. [GOC:krc, ISBN:0815332181, PMID:15563464];Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA. [GOC:elh];Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with single-stranded DNA. [GOC:elh, GOC:vw, PMID:22976174];During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA. [GOC:elh, PMID:11459983];The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. [GOC:mah, ISBN:0198547684];A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B, RAD51C, RAD51D, and XRCC2, or orthologs thereof. [GOC:mah, PMID:16093548, PMID:17114795];The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855];A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the male germline. [GOC:dph, GOC:mah, GOC:vw];A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the female germline. [GOC:dph, GOC:ems, GOC:mah, GOC:vw];Recombination occurring within or between DNA molecules in somatic cells. [GOC:ma];SDSA is a major mechanism of double-strand break repair in mitosis which allows for the error-free repair of a double-strand break without the exchange of adjacent sequences. The broken DNA searches for and base pairs with a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template. Newly synthesized DNA is then displaced from the template and anneal with its complement on the other side of the double-strand break. [PMID:10357855];A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline. [GOC:dph, GOC:mah]"]
["OS09T0521700-02",0.49636472945798604,0.6669716855522011,0.0348155284423632,"OS09G0521700",null,64.4983848392148,67.7041854828694,67.0496407488316,68.3820864848344,"no","OS09G0521700","Os09g0521700 protein [Source:UniProtKB/TrEMBL;Acc:Q64MA5]","Similar to cDNA clone:001-118-F04, full insert sequence. (Os09t0521700-01);Similar to H/ACA ribonucleoprotein complex subunit 1 (Nucleolar protein family A member 1) (snoRNP protein GAR1). (Os09t0521700-02)",9,20377622,20383803,"GO:0003676;GO:0008270","nucleic acid binding;zinc ion binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0728200-01",0.49736092895482203,0.667576271919327,0.0330340252549998,"OS01G0728200",null,203.850783885231,187.338107940703,226.363575485296,173.885877061436,"no","OS01G0728200","Os01g0728200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7R5]","Conserved hypothetical protein. (Os01t0728200-01)",1,30366118,30367630,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0699050-00",0.49863412468217705,0.66866829554009,0.625497686572766,"OS06G0699050",null,9.17328527483539,4.11732105364182,8.7813456007227,11.7226433974002,"no","OS06G0699050","Os06g0699050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X122]","Hypothetical protein. (Os06t0699050-00)",6,29381132,29382672]
["OS01T0503400-04",0.49896997528778403,0.668862337099088,-0.34458320647065804,"OS01G0503400","NRAMP4",23.6554402380917,15.1874122987158,10.352937084156,20.237186738456,"no","OS01G0503400","Metal transporter Nramp4 [Source:UniProtKB/Swiss-Prot;Acc:Q5QN13]","Similar to (Rice Genome Annotation Project) metal transporter Nramp6. (Os01t0503400-01);Similar to cDNA clone:J013164K10, full insert sequence. (Os01t0503400-02);Similar to OsNramp1 (Integral membrane protein). (Os01t0503400-03);Similar to (Rice Genome Annotation Project) metal transporter Nramp6. (Os01t0503400-04);Similar to cDNA clone:J013164K10, full insert sequence. (Os01t0503400-05)",1,17454023,17464973,"GO:0055072;GO:0006810;GO:0005215;GO:0006811;GO:0016020;GO:0016021","iron ion homeostasis;transport;transporter activity;ion transport;membrane;integral component of membrane","Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0370250-01",0.5004413412635811,0.6700917674665791,0.13116269182454401,"OS03G0370250",null,44.5240247489841,55.2345314818761,50.9060802012003,58.347093000095,"no","OS03G0370250","Os03g0370250 protein [Source:UniProtKB/TrEMBL;Acc:C7J0C0]","Protein of unknown function DUF573 family protein. (Os03t0370250-01)",3,14538137,14539609,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS05T0146100-01",0.501291713909315,0.6707306842146531,0.36281068182896997,"OS05G0146100",null,19.3658244690969,7.20531184387319,18.5383962681924,15.6301911965336,"no","OS05G0146100","Os05g0146100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ASR8]","PDZ/DHR/GLGF domain containing protein. (Os05t0146100-01)",5,2639014,2649055]
["OS12T0489100-01",0.502451381435165,0.6716033505855941,0.114747032438735,"OS12G0489100",null,164.099881027611,137.930255297001,184.408257615177,142.625494668369,"no","OS12G0489100","Os12g0489100 protein [Source:UniProtKB/TrEMBL;Acc:Q0INA3]","Similar to Ubiquitin-specific protease 12. (Os12t0489100-01)",12,18334665,18342391,"GO:0016579;GO:0036459;GO:0006511;GO:0006508;GO:0008233","protein deubiquitination;thiol-dependent ubiquitinyl hydrolase activity;ubiquitin-dependent protein catabolic process;proteolysis;peptidase activity","The removal of one or more ubiquitin groups from a protein. [GOC:ai];Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. [EC:3.4.19.12, GOC:bf, GOC:ka];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0130900-00",0.5037304053611871,0.6726680075438171,-0.14759558102086,"OS06G0130900",null,3866.57496539963,3042.37899053528,3050.18882011262,3186.8952972051,"no","OS06G0130900","Os06g0130900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WRT9]","Similar to Histone H3 (Fragment). (Os06t0130900-00)",6,1645434,1646322,"GO:0005694;GO:0000786;GO:0046982;GO:0003677;GO:0005634","chromosome;nucleosome;protein heterodimerization activity;DNA binding;nucleus","A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0700700-01",0.504976338667394,0.6735464608638471,-0.18747051306325802,"OS02G0700700","BRXL2",41.7894106964723,36.026559219366,40.0039077366256,28.3297215437171,"no","OS02G0700700","Protein Brevis radix-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZIK7]","Disease resistance/zinc finger/chromosome condensation-like region domain containing protein. (Os02t0700700-01)",2,28826739,28833632,"GO:0005634;GO:0016020;GO:0016021","nucleus;membrane;integral component of membrane","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0276600-01",0.5051155984901551,0.673578015524105,-0.0458204199106404,"OS04G0276600",null,527.973530262748,630.97945147061,575.66598938071,547.056691878675,"no","OS04G0276600","OSJNBa0009K15.9 protein [Source:UniProtKB/TrEMBL;Acc:Q0JEG9]","Protein of unknown function DUF303, acetylesterase putative domain containing protein. (Os04t0276600-01)",4,11682337,11684694]
["OS12T0138166-00",0.5063214627642321,0.6746455301518001,0.0361868029082518,"OS12G0138166",null,94.0541543678783,80.4119314651186,99.8071188190286,79.0904056016169,"no","OS12G0138166","Os12g0138166 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6V0]","Similar to GRAS family transcription factor containing protein. (Os12t0138166-00)",12,1856119,1857180,"GO:0006355;GO:0043565;GO:0005634;GO:0003700;GO:0006351","regulation of transcription, DNA-templated;sequence-specific DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0226000-00",0.507343380397213,0.6751613798194821,0.175621302081505,"OS05G0226000",null,34.1026716915172,36.4825163799193,38.8153344143607,40.9071558253818,"no","OS05G0226000","Os05g0226000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DJU7]","Similar to Proline-rich protein. (Os05t0226000-00)",5,7692541,7693302]
["OS08T0567200-01",0.508261830684761,0.675736094476972,0.35256356129043803,"OS08G0567200",null,94.832501654006,207.501700771894,211.821560243917,174.207045373694,"no","OS08G0567200","Os08g0567200 protein [Source:UniProtKB/TrEMBL;Acc:Q6YPC4]","RNA recognition motif-related domain containing protein. (Os08t0567200-01);Similar to RNA recognition motif (RRM)-containing protein. (Os08t0567200-02)",8,28401037,28408913,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0779300-01",0.50902169489426,0.6761284649541071,-0.345165463001654,"OS03G0779300",null,24.4620940662277,16.4692842145673,12.6841658677106,19.537738995667,"no","OS03G0779300","Os03g0779300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W4C5]","Hypothetical gene. (Os03t0779300-01)",3,32328398,32328960]
["OS01T0902700-01",0.5095159754324821,0.6766060934169521,-0.289567827798592,"OS01G0902700",null,39.7182938144463,23.5567964245166,30.2768190109279,21.4915128952337,"no","OS01G0902700","Os01g0902700 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZ75]","Similar to Peptide transporter PTR2. (Os01t0902700-01)",1,39307443,39310557,"GO:0006810;GO:0005215;GO:0016020;GO:0016021","transport;transporter activity;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0198200-01",0.510352289367174,0.6771304618380991,-0.0230530693611737,"OS01G0198200",null,146.739002932769,176.693436480908,173.623626273198,144.681703767046,"no","OS01G0198200","Os01g0198200 protein [Source:UniProtKB/TrEMBL;Acc:Q5QMY9]","Similar to Casein kinase-like protein. (Os01t0198200-01);Similar to predicted protein. (Os01t0198200-02);Similar to predicted protein. (Os01t0198200-03)",1,5329063,5335518,"GO:0006468;GO:0016310;GO:0016301;GO:0004674;GO:0005524;GO:0004672;GO:0008360;GO:0018105;GO:0005634;GO:0005737","protein phosphorylation;phosphorylation;kinase activity;protein serine/threonine kinase activity;ATP binding;protein kinase activity;regulation of cell shape;peptidyl-serine phosphorylation;nucleus;cytoplasm","The process of introducing a phosphate group on to a protein. [GOC:hb];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Any process that modulates the surface configuration of a cell. [GOC:dph, GOC:go_curators, GOC:tb];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS03T0281500-01",0.511984265068917,0.678503183519771,0.10282105886369301,"OS03G0281500",null,76.4440439569616,55.5883467193736,65.3722394720468,76.413551370008,"no","OS03G0281500","Os03g0281500 protein [Source:UniProtKB/TrEMBL;Acc:Q10N60]","Similar to Resistance protein candidate (Fragment). (Os03t0281500-01)",3,9632806,9635793,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0123066-01",0.512660155559457,0.6790130087420351,-0.5836765985029321,"OS11G0123066",null,8.2901568163566,9.2639723706941,7.80564053397574,3.9075477991334,"no","OS11G0123066","Os11g0123066 protein [Source:UniProtKB/TrEMBL;Acc:C7J8I3]","Conserved hypothetical protein. (Os11t0123066-01)",11,1033365,1037017]
["OS08T0384500-01",0.5140349588531641,0.6799966158350631,0.5317640826932121,"OS08G0384500",null,154.926595752775,69.994457911911,112.206082675901,212.96135505277,"no","OS08G0384500","Os08g0384500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFJ4]","ABC transporter-like domain containing protein. (Os08t0384500-01)",8,18128558,18132719,"GO:0006810;GO:0016887;GO:0005524;GO:0000166;GO:0016020;GO:0016021","transport;ATPase activity;ATP binding;nucleotide binding;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0859300-01",0.515258233069824,0.6808343120871091,0.688934135913005,"OS01G0859300",null,5.09626959713077,18.5279447413882,11.7084608009636,26.3759476441504,"no","OS01G0859300","Os01g0859300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JHJ8]","Similar to ABA response element binding factor (Fragment). (Os01t0859300-01)",1,37174784,37176384,"GO:0009737;GO:0005634;GO:0003700;GO:0006355;GO:0010152;GO:0009409;GO:0009414;GO:0009651;GO:0043565","response to abscisic acid;nucleus;transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated;pollen maturation;response to cold;response to water deprivation;response to salt stress;sequence-specific DNA binding","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains. [PMID:11595796];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl]"]
["OS12T0228400-02",0.515894597771507,0.6810764981641511,-0.0376375276493032,"OS12G0228400",null,95.8448388230312,128.773194015864,103.572859827882,115.261037334498,"no","OS12G0228400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:B7ER93]","Similar to cDNA clone:J033003J10, full insert sequence. (Os12t0228400-01);Similar to cDNA clone:J033003J10, full insert sequence. (Os12t0228400-02)",12,6976909,6982100]
["OS02T0593400-02",0.5161732497832671,0.681217284843003,-0.7572735795742891,"OS02G0593400",null,46.8081101348785,37.2084945818355,22.1857983586291,27.5195434264805,"no","OS02G0593400","Os02g0593400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DZX4]","Conserved hypothetical protein. (Os02t0593400-01);Conserved hypothetical protein. (Os02t0593400-02);Conserved hypothetical protein. (Os02t0593400-03)",2,22969552,22976636,"GO:0090266;GO:0005680","regulation of mitotic cell cycle spindle assembly checkpoint;anaphase-promoting complex","Any process that modulates the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle];A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B. [GOC:jh, GOC:vw, PMID:10465783, PMID:10611969]"]
["OS05T0571100-02",0.517095929241557,0.681824786828453,-0.48822313325874706,"OS05G0571100",null,94.1111118936815,136.900925033591,65.372239472047,99.3168398946404,"no","OS05G0571100","Os05g0571100 protein [Source:UniProtKB/TrEMBL;Acc:Q65XL5]","Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 domain containing protein. (Os05t0571100-01);Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 domain containing protein. (Os05t0571100-02)",5,28464100,28466020]
["OS06T0275800-01",0.517954891803279,0.6822694599626541,-0.378697121800987,"OS06G0275800",null,340.274540744036,549.823555853804,260.632084423167,423.970728734192,"no","OS06G0275800","Os06g0275800 protein [Source:UniProtKB/TrEMBL;Acc:Q9FNZ8]","Amino acid transporter, transmembrane domain containing protein. (Os06t0275800-01);Amino acid transporter, transmembrane domain containing protein. (Os06t0275800-02);Amino acid transporter, transmembrane domain containing protein. (Os06t0275800-03)",6,9396137,9399067,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0130300-02",0.5189592212714941,0.682856373155032,-0.10191638946522301,"OS11G0130300",null,59.6393367095804,57.1094199806302,54.8806217262406,53.9052193892595,"no","OS11G0130300","Nse1 non-SMC component of SMC5-6 complex family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RB11]","Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-01);Nse1 non-SMC component of SMC5-6 complex family protein. (Os11t0130300-02)",11,1392723,1394979,"GO:0006301;GO:0000724;GO:0004842;GO:0016567;GO:0005634;GO:0030915;GO:0006281","postreplication repair;double-strand break repair via homologous recombination;ubiquitin-protein transferase activity;protein ubiquitination;nucleus;Smc5-Smc6 complex;DNA repair","The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. [GOC:elh];The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans. [GOC:rb, PMID:14701739];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS06T0693400-01",0.519116371484553,0.6829565823575541,-0.034127717992769396,"OS06G0693400",null,92.75210666778,112.19699871174,85.8620458737331,114.295773124652,"no","OS06G0693400","Os06g0693400 protein [Source:UniProtKB/TrEMBL;Acc:Q0D9X5]","Conserved hypothetical protein. (Os06t0693400-01)",6,28950824,28953454]
["OS02T0256000-01",0.5208903145489581,0.684500333834652,0.320922258065068,"OS02G0256000",null,39.3404291513498,18.3870644660314,36.6965384342511,35.4125371184381,"no","OS02G0256000","Os02g0256000 protein [Source:UniProtKB/TrEMBL;Acc:Q6EN37]","Hypothetical protein. (Os02t0256000-01)",2,8834020,8835881]
["OS08T0465800-02",0.5215843671604581,0.6848088219885791,0.656607519856047,"OS08G0465800",null,333.351063813479,129.375918803757,524.977365314938,204.452236188374,"no","OS08G0465800","Glutamate decarboxylase 5 [Source:Projected from Arabidopsis thaliana (AT3G17760) UniProtKB/Swiss-Prot;Acc:Q9LSH2]","Similar to Glutamate decarboxylase. (Os08t0465800-01);Similar to Glutamate decarboxylase. (Os08t0465800-02)",8,22878735,22882730,"GO:0016831;GO:0006536;GO:0004351;GO:0030170;GO:0019752;GO:0016829;GO:0003824","carboxy-lyase activity;glutamate metabolic process;glutamate decarboxylase activity;pyridoxal phosphate binding;carboxylic acid metabolic process;lyase activity;catalytic activity","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators];Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2. [EC:4.1.1.15];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0760600-01",0.522563791554562,0.685389927705483,0.522548421614736,"OS01G0760600",null,14.284939836788,0,13.6745985581116,6.8455813801806,"no","OS01G0760600","Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:Q0JJ47]","Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A). (Os01t0760600-01);Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A). (Os01t0760600-02);Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A). (Os01t0760600-03);Similar to Aspartate aminotransferase. (Os01t0760600-04)",1,31998877,32003690,"GO:0006807;GO:0006536;GO:0006531;GO:0006522;GO:0006103;GO:0006099;GO:0004069;GO:0005737;GO:0080130;GO:0008483;GO:0006520;GO:0030170;GO:0009058;GO:0003824;GO:0016740","nitrogen compound metabolic process;glutamate metabolic process;aspartate metabolic process;alanine metabolic process;2-oxoglutarate metabolic process;tricarboxylic acid cycle;L-aspartate:2-oxoglutarate aminotransferase activity;cytoplasm;L-phenylalanine:2-oxoglutarate aminotransferase activity;transaminase activity;cellular amino acid metabolic process;pyridoxal phosphate binding;biosynthetic process;catalytic activity;transferase activity","The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732];The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators];The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways involving alanine, 2-aminopropanoic acid. [GOC:go_curators];The chemical reactions and pathways involving oxoglutarate, the dianion of 2-oxoglutaric acid. It is a key constituent of the TCA cycle and a key intermediate in amino-acid metabolism. [ISBN:0198506732];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate. [EC:2.6.1.1];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: L-phenylalanine + 2-oxoglutarate = phenylpyruvate + L-glutamate. [GOC:pmn_curators, PMID:18394996];Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0333100-01",0.5235004986449651,0.685970378651475,-0.30933445659519504,"OS08G0333100",null,50.9626959713077,63.8184763314483,60.4937141383119,32.1362947911235,"no","OS08G0333100","Os08g0333100 protein [Source:UniProtKB/TrEMBL;Acc:Q6YTQ8]","Conserved hypothetical protein. (Os08t0333100-01)",8,14760294,14766266]
["OS03T0725400-02",0.5244037877131971,0.686502036259044,0.19898579373011102,"OS03G0725400",null,80.5976275660406,53.6061818018495,67.0704793519325,86.9808804132632,"no","OS03G0725400","COMPASS-like H3K4 histone methylase component WDR5A [Source:Projected from Arabidopsis thaliana (AT3G49660) UniProtKB/Swiss-Prot;Acc:Q9M2Z2]","Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3). (Os03t0725400-01);Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3). (Os03t0725400-02);Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3). (Os03t0725400-03)",3,29486017,29490529,"GO:0042393;GO:0010228;GO:0005634;GO:0048188","histone binding;vegetative to reproductive phase transition of meristem;nucleus;Set1C/COMPASS complex","Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. [PMID:11687631, PMID:11742990, PMID:11805083, PMID:12488447, PMID:18508253, PMID:18838538]"]
["OS08T0223700-00",0.525835327970782,0.6876983408314431,0.41541836740862403,"OS08G0223700",null,9.17328527483539,11.322632897515,14.6355760012045,12.6995303471835,"no","OS08G0223700","Os08g0223700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDZ9]","EMB1135 (EMBRYO DEFECTIVE 1135). (Os08t0223700-00)",8,7488653,7492184,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS02T0105100-02",0.526130288442151,0.687877977254562,-0.0744305315999431,"OS02G0105100",null,1240.62538713947,1334.83548559068,1314.60646463086,1131.35231428309,"no","OS02G0105100","Os02g0105100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VDY2]","Sec16, central conserved domain domain containing protein. (Os02t0105100-01);Hypothetical conserved gene. (Os02t0105100-02)",2,279365,286448,"GO:0000139;GO:0048208;GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","Golgi membrane;COPII vesicle coating;RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat. [GOC:ascb_2009, GOC:dph, GOC:jid, GOC:mah, GOC:tb, ISBN:0716731363, PMID:10219233];The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS10T0135300-01",0.527261093334217,0.6886491502884321,0.0564736197082883,"OS10G0135300",null,237.506786218612,268.705193730736,278.379853747154,248.040499655749,"no","OS10G0135300","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q33B73]","F-box domain, cyclin-like domain containing protein. (Os10t0135300-01);F-box domain, cyclin-like domain containing protein. (Os10t0135300-02)",10,2185292,2188535]
["OS01T0176800-01",0.528089918277453,0.689138552255649,-0.508008942240675,"OS01G0176800",null,109.671906085917,54.8364096106917,44.0755807169677,71.6053905191646,"no","OS01G0176800","Os01g0176800 protein [Source:UniProtKB/TrEMBL;Acc:Q5VRW0]","Protein of unknown function DUF2921 domain containing protein. (Os01t0176800-01)",1,3958210,3962124,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0158500-01",0.529275929812253,0.6898681812878481,-0.0595222713618288,"OS06G0158500",null,136.580025203105,152.340878984747,159.039925879756,118.203320923785,"no","OS06G0158500","Os06g0158500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT44]","Conserved hypothetical protein. (Os06t0158500-01)",6,2985133,2990867,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS05T0478000-01",0.53010077827256,0.690410051060758,-0.585353104832653,"OS05G0478000",null,8.15403135540923,12.3519631609255,7.80564053397574,5.86132169870009,"no","OS05G0478000","Os05g0478000 protein [Source:UniProtKB/TrEMBL;Acc:Q75GN1]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0478000-01)",5,23510183,23511070,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0485400-01",0.5304413613412791,0.6907064088862781,0.42869343658065806,"OS04G0485400",null,11.2117931136877,6.19597817088503,11.7084608009636,11.7226433974002,"no","OS04G0485400","Os04g0485400 protein [Source:UniProtKB/TrEMBL;Acc:B7F661]","Similar to Nucleotide-binding protein. (Os04t0485400-01);Similar to nucleotide-binding protein 1. (Os04t0485400-02)",4,24267885,24270169,"GO:0016226;GO:0051539;GO:0051536;GO:0005737;GO:0009570;GO:0009536;GO:0009507;GO:0046872;GO:0005524;GO:0000166;","iron-sulfur cluster assembly;4 iron, 4 sulfur cluster binding;iron-sulfur cluster binding;cytoplasm;chloroplast stroma;plastid;chloroplast;metal ion binding;ATP binding;nucleotide binding;","The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];"]
["OS05T0515400-01",0.531641255987586,0.6914824411870231,2.40998545024212E-3,"OS05G0515400",null,78.7284616432628,92.7578997271995,81.6450842915779,90.1279800916174,"no","OS05G0515400","Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPL8]","Similar to Auxin response factor 14. (Os05t0515400-01);Similar to Auxin response factor 14. (Os05t0515400-02)",5,25555850,25561791,"GO:0009725;GO:0005634;GO:0006355;GO:0003677;GO:0009734;GO:0006351","response to hormone;nucleus;regulation of transcription, DNA-templated;DNA binding;auxin-activated signaling pathway;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0684000-00",0.53233211337341,0.69181210293013,0.48377753675801705,"OS02G0684000",null,8.15403135540923,7.20531184387319,10.7327557342166,10.7457564476168,"no","OS02G0684000","Os02g0684000 protein [Source:UniProtKB/TrEMBL;Acc:Q6EU02]","Tetratricopeptide-like helical domain containing protein. (Os02t0684000-00)",2,27965554,27966300]
["OS05T0596200-02",0.53361315370384,0.692740251209302,-0.418996180445507,"OS05G0596200",null,12.023134595847,12.729908719354,6.93802806093445,11.5758834404983,"no","OS05G0596200","Os05g0596200 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKF1]","Similar to cDNA clone:001-104-D04, full insert sequence. (Os05t0596200-01);Similar to predicted protein. (Os05t0596200-02);Similar to cDNA clone:001-104-D04, full insert sequence. (Os05t0596200-03)",5,29693028,29694622]
["OS01T0213400-01",0.5343153419911281,0.6930334251119911,-0.199588133080076,"OS01G0213400",null,33.9176588302945,27.1594737588407,21.4655114684333,31.7204022927711,"no","OS01G0213400","Os01g0213400 protein [Source:UniProtKB/TrEMBL;Acc:Q94IZ7]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0213400-01)",1,6199245,6200202,"GO:0043161;GO:0061630;GO:0016567;GO:0046872;GO:0008270;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;metal ion binding;zinc ion binding;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0530700-01",0.535678230514473,0.69400565256035,-0.12759867139407202,"OS09G0530700",null,69.9234617795187,59.3314999531604,68.4748166490665,49.8391992998432,"no","OS09G0530700","Os09g0530700 protein [Source:UniProtKB/TrEMBL;Acc:Q652K9]","Hypothetical conserved gene. (Os09t0530700-01);Conserved hypothetical protein. (Os09t0530700-02)",9,20787543,20790463]
["OS05T0168800-03",0.536138202979166,0.694424893056617,-0.0507898940521398,"OS05G0168800",null,185.219629103077,233.781601367996,219.043197008777,185.463779964973,"no","OS05G0168800","Os05g0168800 protein [Source:UniProtKB/TrEMBL;Acc:Q60DT8]","KIP1-like domain containing protein. (Os05t0168800-01);KIP1-like domain containing protein. (Os05t0168800-02);Similar to CENP-E like kinetochore protein. (Os05t0168800-03)",5,4129195,4134223,"GO:0003779","actin binding","Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. [GOC:clt]"]
["OS02T0604300-01",0.5368515633420791,0.6948391932711161,-0.0644068684754807,"OS02G0604300","CSTLP5",1949.5243604441,2152.43888251952,1846.23574987075,2076.62927116369,"no","OS02G0604300","CMP-sialic acid transporter 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6K8S7]","Nucleotide-sugar transporter family protein. (Os02t0604300-01)",2,23677350,23682615,"GO:0015992;GO:0005351;GO:0008643;GO:0000139;GO:0006810;GO:0016021;GO:0016020;GO:0005794","proton transport;sugar:proton symporter activity;carbohydrate transport;Golgi membrane;transport;integral component of membrane;membrane;Golgi apparatus","The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732]"]
["OS01T0673800-01",0.537946020442276,0.6955280074715361,0.0501197383480192,"OS01G0673800",null,243.382586908953,184.099629166559,243.082188242018,199.511887772577,"no","OS01G0673800","Os01g0673800 protein [Source:UniProtKB/TrEMBL;Acc:Q5QMQ3]","Similar to ATP synthase protein I -related. (Os01t0673800-01);Similar to ATP synthase protein I -related. (Os01t0673800-02);Similar to predicted protein. (Os01t0673800-03)",1,27677194,27681560]
["OS11T0435500-01",0.53988241099441,0.697237541928523,-0.380562036712834,"OS11G0435500",null,77.2930502593548,46.0290586988548,57.4045074784896,37.323925863068,"no","OS11G0435500","Os11g0435500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y1U8]","Similar to alkaline alpha galactosidase 3. (Os11t0435500-01)",11,14134259,14136888,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0631800-01",0.54088963020085,0.6979751639591311,-0.22863837436844303,"OS01G0631800",null,21.4043323079492,27.7919171120823,16.5869861346984,25.3990606943671,"no","OS01G0631800","Os01g0631800 protein [Source:UniProtKB/TrEMBL;Acc:Q8RZJ7]","Conserved hypothetical protein. (Os01t0631800-01)",1,25288392,25289157,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0188566-01",0.542620877629285,0.6994753900506011,-0.22927117887851803,"OS12G0188566",null,29.7446574657218,45.7480112913244,34.1134835649987,30.2867253908604,"no","OS12G0188566","Os12g0188566 protein [Source:UniProtKB/TrEMBL;Acc:B9GC78]","Similar to Thioredoxin (TRX). (Os12t0188566-01)",12,4455513,4462965]
["OS01T0610600-02",0.542655566736126,0.699483706402599,0.9236291534502661,"OS01G0610600",null,4.10101323779206,5.21916989753969,13.745195868483,3.93408217648616,"no","OS01G0610600","Endonuclease/exonuclease/phosphatase family protein-like [Source:UniProtKB/TrEMBL;Acc:Q5ZE24]","Endonuclease/exonuclease/phosphatase domain containing protein. (Os01t0610600-01);Similar to endonuclease/exonuclease/phosphatase family protein. (Os01t0610600-02)",1,24155649,24162572,"GO:0004527;GO:0004519;GO:0090305;GO:0046872;GO:0008270;GO:0016020;GO:0016021","exonuclease activity;endonuclease activity;nucleic acid phosphodiester bond hydrolysis;metal ion binding;zinc ion binding;membrane;integral component of membrane","Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0295900-01",0.5434537908457591,0.6997658265366,-0.0399610344087724,"OS01G0295900",null,63.7057458868098,67.2748909544545,72.2670296575695,55.1353757323442,"no","OS01G0295900","Os01g0295900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V193]","Similar to cDNA clone:J023064I01, full insert sequence. (Os01t0295900-01)",1,10814139,10818530,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0425200-01",0.5448936665863651,0.700859527016216,-0.0771997705159525,"OS03G0425200",null,40.8628162244793,40.565621425214,0,77.1856659524763,"no","OS03G0425200","Probable uridine nucleosidase 2 [Source:Projected from Arabidopsis thaliana (AT1G05620) UniProtKB/Swiss-Prot;Acc:Q8LAC4]","Inosine/uridine-preferring nucleoside hydrolase domain containing protein. (Os03t0425200-01);Inosine/uridine-preferring nucleoside hydrolase domain containing protein. (Os03t0425200-02)",3,17745404,17748496,"GO:0006152;GO:0008477;GO:0005829;GO:0016787","purine nucleoside catabolic process;purine nucleosidase activity;cytosol;hydrolase activity","The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:go_curators];Catalysis of the reaction: a N-D-ribosylpurine + H2O = a purine + D-ribose. [EC:3.2.2.1];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0329300-01",0.5461039945513091,0.7018285130833971,0.677774221596752,"OS01G0329300",null,3.05776175827846,7.20531184387319,5.8542304004818,10.5632994451304,"no","OS01G0329300","Os01g0329300 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZDR5]","Pectin lyase fold domain containing protein. (Os01t0329300-01)",1,12701744,12704532,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS04T0497300-00",0.5476821245680941,0.7031432927826661,-0.13159587077423,"OS04G0497300",null,82.5595674735185,59.7011552778064,55.6151888045771,74.2434081835345,"no","OS04G0497300","Os04g0497300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBZ9]","Similar to Atozi1 (Fragment). (Os04t0497300-00)",4,24875271,24875935,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0310400-01",0.548027368000376,0.703355744294694,0.122289943509629,"OS02G0310400",null,49.9434420518816,37.0558894827764,51.7123685375892,42.9830257904674,"no","OS02G0310400","Os02g0310400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF60]","Conserved hypothetical protein. (Os02t0310400-01)",2,12188660,12189305]
["OS07T0669650-01",0.5487054924068461,0.703745299607009,-0.006239938316882951,"OS07G0669650",null,2156.51074968982,1868.28772626312,1981.87619980165,2025.55182765976,"no","OS07G0669650","Os07g0669650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XAT5]","Similar to Isoform 2 of Potassium transporter 7. (Os07t0669650-01)",7,28312232,28313288,"GO:0071805;GO:0015079;GO:0016020","potassium ion transmembrane transport;potassium ion transmembrane transporter activity;membrane","A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS03T0150700-00",0.551003006901958,0.7055424923247531,0.195020919867177,"OS03G0150700",null,29.5583636633585,21.6159355316196,26.3440368021681,32.2372693428505,"no","OS03G0150700","Os03g0150700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VT20]","Hypothetical conserved gene. (Os03t0150700-00)",3,2811754,2814873]
["OS02T0234500-03",0.551501467763027,0.70586300008016,0.258399817023138,"OS02G0234500",null,111.516624087787,130.812358298657,173.899742852512,115.962370567305,"no","OS02G0234500","Os02g0234500 protein [Source:UniProtKB/TrEMBL;Acc:Q6EUK5]","NAD(P)-binding domain containing protein. (Os02t0234500-01);Similar to predicted protein. (Os02t0234500-02);Similar to UOS1. (Os02t0234500-03)",2,7621905,7627260,"GO:0005773;GO:0009507;GO:0009570","vacuole;chloroplast;chloroplast stroma","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS03T0117900-01",0.552816937509355,0.706813260185568,-0.445411328929652,"OS03G0117900",null,8.15403135540923,5.14665131705228,0.9757050667469671,8.79198254805014,"no","OS03G0117900","AP2 domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10SM1]","Similar to Transcription factor. (Os03t0117900-01)",3,978816,979770,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0188200-01",0.553943279742201,0.707350793391445,0.23184918404144703,"OS01G0188200",null,21.4959048618148,29.1199953940842,36.1736837025466,23.2665522189914,"no","OS01G0188200","Os01g0188200 protein [Source:UniProtKB/TrEMBL;Acc:B7EZ59]","Conserved hypothetical protein. (Os01t0188200-01)",1,4734017,4737606,"GO:0032039;GO:0016180","integrator complex;snRNA processing","A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II. [PMID:16239144];Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule. [GOC:jl]"]
["OS05T0268500-01",0.554870463995,0.708089685420064,-0.336984215610021,"OS05G0268500",null,162.332571128072,161.311611973451,74.7467818933717,181.480546783189,"no","OS05G0268500","Carboxypeptidase [Source:UniProtKB/TrEMBL;Acc:Q5W6C5]","Similar to Serine carboxypeptidase 2. (Os05t0268500-01);Similar to Serine carboxypeptidase II chains A and B (EC 3.4.16.6) (Carboxypeptidase D) (CPDW-II) (CP-WII). (Os05t0268500-02);Similar to Serine carboxypeptidase 2. (Os05t0268500-03);Similar to Serine carboxypeptidase 2. (Os05t0268500-04)",5,10757560,10790674,"GO:0004185;GO:0004180;GO:0006508;GO:0016787;GO:0008233;GO:0016020;GO:0016021;GO:0005773;GO:0051603","serine-type carboxypeptidase activity;carboxypeptidase activity;proteolysis;hydrolase activity;peptidase activity;membrane;integral component of membrane;vacuole;proteolysis involved in cellular protein catabolic process","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb]"]
["OS03T0157400-01",0.5552109922834411,0.70839345596879,-0.17490207041435,"OS03G0157400",null,30.0828181315977,26.7202163808804,28.5748581657138,21.7428402220233,"no","OS03G0157400","ABC transporter family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10RJ4]","ABC transporter-like domain containing protein. (Os03t0157400-01);Similar to white-brown-complex ABC transporter family. (Os03t0157400-02)",3,3076026,3085989,"GO:0006810;GO:0016887;GO:0005524;GO:0000166;GO:0016020;GO:0016021;GO:0042626;GO:0005886;GO:0055085;GO:0009414;GO:0010148","transport;ATPase activity;ATP binding;nucleotide binding;membrane;integral component of membrane;ATPase activity, coupled to transmembrane movement of substances;plasma membrane;transmembrane transport;response to water deprivation;transpiration","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Release of water by the plant into the air as water vapor mainly through leaves. [GOC:sm, ISBN:0879015322]"]
["OS09T0530500-01",0.5561687117885631,0.7090071969692141,0.1838413077901,"OS09G0530500",null,39.75090285762,24.7039263218509,42.9310229368665,30.2834954432838,"no","OS09G0530500",null,"Hypothetical conserved gene. (Os09t0530500-01)",9,20779673,20782356,"GO:0046872;GO:0003677","metal ion binding;DNA binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS08T0301600-01",0.557295349206079,0.7096835211618661,-0.0811586638120464,"OS08G0301600",null,82.5595674735185,63.7006377068179,58.3640082054833,79.8954931153656,"no","OS08G0301600","Os08g0301600 protein [Source:UniProtKB/TrEMBL;Acc:Q69VN9]","Conserved hypothetical protein. (Os08t0301600-01)",8,12430023,12431026]
["OS02T0135900-01",0.5583988595853611,0.7103163820836,-0.0357275301535841,"OS02G0135900",null,66.828877343113,75.020151064369,59.0076748546259,79.3716818085989,"no","OS02G0135900","Os02g0135900 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z0Y8]","Similar to 5'-AMP-activated protein kinase beta-1 subunit-related. (Os02t0135900-01);Similar to predicted protein. (Os02t0135900-02)",2,1909010,1912796,"GO:0030247;GO:2001070;GO:0010581;GO:0019252;GO:0009507;GO:0009569;GO:0009570","polysaccharide binding;starch binding;regulation of starch biosynthetic process;starch biosynthetic process;chloroplast;chloroplast starch grain;chloroplast stroma","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with starch. [GOC:mengo_curators];An process which modulate the frequency, rate or extent of starch biosynthesis, the chemical reactions and pathways resulting in the formation of starch. [GOC:tb];The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Plant storage body for amylose and amylopectin, 1-100um in diameter, and located in chloroplasts. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped. [GOC:jl, ISBN:0198506732];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS12T0584200-02",0.5593868559510761,0.7110033374804371,-0.6053470263368931,"OS12G0584200",null,9.0721524090805,13.2352451688613,8.2990467698777,6.36390124764624,"no","OS12G0584200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QN02]","Similar to cDNA clone:J013075O22, full insert sequence. (Os12t0584200-01);Conserved hypothetical protein. (Os12t0584200-02)",12,24273980,24275502,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS01T0901800-01",0.5600933628993651,0.7116771081450081,-0.0700065115086379,"OS01G0901800",null,88.3577535532278,64.6622640098802,67.3803464079142,78.3916788501748,"no","OS01G0901800","Os01g0901800 protein [Source:UniProtKB/TrEMBL;Acc:Q5N6Y5]","Similar to acid phosphatase/vanadium-dependent haloperoxidase related. (Os01t0901800-01);Acid phosphatase/vanadium-dependent haloperoxidase related family protein. (Os01t0901800-02)",1,39266781,39269329,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0230000-01",0.56126687708059,0.7123549575332221,0.36788230530999705,"OS02G0230000",null,11.2117931136877,9.2639723706941,11.7084608009636,14.7146384189066,"no","OS02G0230000","Os02g0230000 protein [Source:UniProtKB/TrEMBL;Acc:Q6H529]","Conserved hypothetical protein. (Os02t0230000-01);Conserved hypothetical protein. (Os02t0230000-02)",2,7312011,7314657]
["OS07T0165100-01",0.562179381196503,0.7130102725026181,-0.310172808345459,"OS07G0165100",null,13.25030095254,18.5279447413882,11.2846585822971,14.3459311718731,"no","OS07G0165100","Os07g0165100 protein [Source:UniProtKB/TrEMBL;Acc:Q7XID7]","Similar to predicted protein. (Os07t0165100-01)",7,3485972,3488626,"GO:0016757;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring glycosyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0593700-01",0.564011373657437,0.714621801019451,-0.109546637427002,"OS11G0593700",null,229.190553992954,256.303235589204,196.003529691291,253.990606943671,"no","OS11G0593700","NA","Cyclin-like F-box domain containing protein. (Os11t0593700-01)","NA","NA","NA","NA","NA","NA"]
["OS08T0145501-01",0.565170382781649,0.715437561000412,-0.0847436525663119,"OS08G0145501",null,43.8279185353246,57.6424947509855,43.9067280036135,51.7750083385175,"no","OS08G0145501","Os08g0145501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBN3]","Conserved hypothetical protein. (Os08t0145501-01)",8,2572008,2573290]
["OS04T0580800-01",0.566950112041118,0.717007195259551,0.38947641822857804,"OS04G0580800",null,96.8291223454846,38.0852197461869,74.1535850727695,102.573129727252,"no","OS04G0580800","OSJNBa0064M23.12 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUN1]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0580800-01)",4,29317364,29318451,"GO:0043161;GO:0061630;GO:0016567;GO:0046872;GO:0008270;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;metal ion binding;zinc ion binding;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0252400-01",0.567108249466981,0.71706457207622,0.150047468986439,"OS04G0252400",null,83.5788213929446,102.933026341046,120.011723209877,86.9429385307181,"no","OS04G0252400","Os04g0252400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7T0]","Similar to SNARE-interacting protein KEULE. (Os04t0252400-01)",4,9938870,9956327,"GO:0006904;GO:0016192","vesicle docking involved in exocytosis;vesicle-mediated transport","The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. [GOC:jid];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]"]
["OS08T0422000-01",0.568158282108712,0.717749935313932,0.6700962822194381,"OS08G0422000",null,11.8553870519703,5.98629470265268,14.186064181836,14.2032479284219,"no","OS08G0422000","Glycine/D-amino acid oxidases-like [Source:UniProtKB/TrEMBL;Acc:Q7EYS3]","Similar to CM0545.530.nc protein (Fragment). (Os08t0422000-01);Similar to CM0545.530.nc protein (Fragment). (Os08t0422000-02)",8,20208860,20218785,"GO:0016491;GO:0055114;GO:0009507","oxidoreductase activity;oxidation-reduction process;chloroplast","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS10T0574500-00",0.569281232422403,0.7184908804480851,0.0981206941694521,"OS10G0574500",null,51.9819498907339,72.0531184387319,76.1049952062634,56.6594430874342,"no","OS10G0574500","Os10g0574500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XXI5]","DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal domain containing protein. (Os10t0574500-00)",10,22819400,22822941,"GO:0006261;GO:0006281;GO:0005634;GO:0006260;GO:0005663;GO:0003689;GO:0003677","DNA-dependent DNA replication;DNA repair;nucleus;DNA replication;DNA replication factor C complex;DNA clamp loader activity;DNA binding","A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides. [PMID:14614842, PMID:14646196, PMID:16172520];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex. [GOC:mah, GOC:vw, PMID:16082778];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS05T0149300-00",0.57089261755538,0.7198477611040851,-0.303062797132506,"OS05G0149300",null,77.9658410674132,54.0298752789836,40.6670532683552,66.3194134049087,"no","OS05G0149300","Os05g0149300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WI62]","Similar to 1-aminocyclopropane-1-carboxylate oxidase. (Os05t0149300-00)",5,2819814,2821347,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS05T0582100-01",0.572426277580895,0.7210229934530531,-0.12585770191946302,"OS05G0582100",null,1162.7339006934,1267.5551145204,979.395883867935,1247.86443884998,"no","OS05G0582100","Os05g0582100 protein [Source:UniProtKB/TrEMBL;Acc:Q6L5D7]","Cas1p-like family protein. (Os05t0582100-01);Similar to predicted protein. (Os05t0582100-02)",5,28960225,28965678,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0501300-01",0.5726257484832751,0.721110501119534,0.243152975724286,"OS08G0501300",null,17.5150149367682,8.28051463327518,15.7460008957008,14.7849821023646,"no","OS08G0501300","Os08g0501300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZK08]","Conserved hypothetical protein. (Os08t0501300-01)",8,24762330,24762913]
["OS11T0524900-00",0.573623557397494,0.721815761009848,0.43305194900578603,"OS11G0524900",null,30.1335833716681,22.64526579503,46.8338432038544,24.4221737445837,"no","OS11G0524900","Os11g0524900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KT00]","Similar to Jacalin-like lectin domain containing protein, expressed. (Os11t0524900-00)",11,19022642,19026620,"GO:0030246;GO:0043531","carbohydrate binding;ADP binding","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS10T0488900-01",0.5749698868332821,0.7227219609368241,0.165008467985528,"OS10G0488900",null,32.0859576333029,33.0437391299613,39.0896794528918,33.9319558339964,"no","OS10G0488900","Os10g0488900 protein [Source:UniProtKB/TrEMBL;Acc:Q0IWT7]","Pentatricopeptide repeat domain containing protein. (Os10t0488900-01)",10,18541553,18542794,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS02T0680500-01",0.576207797785052,0.7235337897303411,-0.151327702126932,"OS02G0680500",null,54.0204577295862,57.6424947509855,62.4451242718059,38.0985910415506,"no","OS02G0680500","Os02g0680500 protein [Source:UniProtKB/TrEMBL;Acc:Q6EPN7]","Pentatricopeptide repeat domain containing protein. (Os02t0680500-01)",2,27770811,27773155,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS06T0314100-01",0.577385345167695,0.724387198815843,0.19439839528176,"OS06G0314100",null,22.4235862273754,18.5279447413882,26.3440368021681,20.5146259454503,"no","OS06G0314100","Os06g0314100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WW67]","Conserved hypothetical protein. (Os06t0314100-01)",6,12054982,12056084]
["OS03T0164901-00",0.5787129583199,0.7253121030264551,-0.515984324390632,"OS03G0164901",null,8.15403135540923,7.20531184387319,3.90282026698787,6.83820864848344,"no","OS03G0164901","Os03g0164901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KGM8]","Hypothetical gene. (Os03t0164901-00)",3,3487755,3488340]
["OS09T0505000-00",0.5789884760797831,0.725385709882291,-0.44527838376510803,"OS09G0505000",null,18.3465705496708,8.23464210728365,12.6841658677106,6.83820864848344,"no","OS09G0505000","Os09g0505000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPH1]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0505000-00)",9,19519267,19520097]
["OS05T0542500-02",0.58028761425416,0.7264787761147381,0.0850612065333829,"OS05G0542500","LEA3",61.0477447568112,92.109230741104,77.8823960664425,84.5762225320225,"no","OS05G0542500","LEA protein [Source:UniProtKB/TrEMBL;Acc:V5K4U5]","Similar to Isoform 2 of Late embryogenesis abundant protein, group 3. (Os05t0542500-01);LEA-like protein. (Os05t0542500-02)",5,26927607,26928882]
["OS11T0661000-03",0.582102411179934,0.7280995729137061,-0.119899598709819,"OS11G0661000",null,38.5812004809828,43.9428740257291,37.9361697574639,38.0067493847531,"no","OS11G0661000","Os11g0661000 protein [Source:UniProtKB/TrEMBL;Acc:H2KW94]","Pentatricopeptide repeat domain containing protein. (Os11t0661000-01);Pentatricopeptide repeat domain containing protein. (Os11t0661000-02);Non-protein coding transcript. (Os11t0661000-03)",11,26524929,26531006,"GO:0008270;GO:0016020;GO:0016021;GO:0016554;GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;","zinc ion binding;membrane;integral component of membrane;cytidine to uridine editing;RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The conversion of a cytosine residue to uridine in an RNA molecule by deamination. [PMID:11092837];The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];"]
["OS10T0466100-00",0.583589630261519,0.729277202215027,0.21210743570866802,"OS10G0466100",null,16.3080627108185,21.6159355316196,24.3926266686742,19.537738995667,"no","OS10G0466100","Os10g0466100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XV57]","Similar to predicted protein. (Os10t0466100-00)",10,17198438,17200621]
["OS09T0332100-01",0.5848473770112761,0.7301212381991791,0.11364489166703501,"OS09G0332100",null,46.8856802936031,44.2612013266496,40.0039077366256,58.6132169870009,"no","OS09G0332100","Os09g0332100 protein [Source:UniProtKB/TrEMBL;Acc:Q6EQ70]","Conserved hypothetical protein. (Os09t0332100-01)",9,9933451,9934162,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0204100-02",0.585992258409594,0.7307144801816221,-0.129462678608114,"OS11G0204100",null,51.737906025502,70.5644701931832,65.9022350931468,45.9031560935973,"no","OS11G0204100","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R963]","Conserved hypothetical protein. (Os11t0204100-01);Hypothetical conserved gene. (Os11t0204100-02)",11,5258104,5266068,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0219000-01",0.585843147328985,0.7307144801816221,-0.12834643875377402,"OS11G0219000",null,42.8086646158985,61.7598158046274,55.6151888045771,40.0523649411173,"no","OS11G0219000","Os11g0219000 protein [Source:UniProtKB/TrEMBL;Acc:C7J9B2]","Peptidase S16, lon N-terminal domain containing protein. (Os11t0219000-01)",11,6201172,6204657]
["OS12T0600200-02",0.587275555148496,0.7316279057615741,-0.8784150367409461,"OS12G0600200",null,10.7621885617627,20.7143885738053,8.48805797224006,8.63408917212145,"no","OS12G0600200","Os12g0600200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBX7]","Similar to Zinc finger, C3HC4 type family protein, expressed. (Os12t0600200-01);Similar to Zinc finger, C3HC4 type (RING finger) containing protein. (Os12t0600200-02);Similar to Zinc finger, C3HC4 type (RING finger) containing protein. (Os12t0600200-03)",12,25247754,25253940]
["OS10T0573700-01",0.588281649055863,0.7322542653067721,0.38940912263264,"OS10G0573700",null,294.451307832908,127.565965864127,248.992913157138,303.789292007123,"no","OS10G0573700","Mitochondrial carnitine/acylcarnitine carrier, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XBY4]","Similar to Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein). (Os10t0573700-01);Similar to Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein). (Os10t0573700-02)",10,22774959,22777294,"GO:0006839;GO:0016021;GO:0005743;GO:1903352;GO:0000066;GO:0000064;GO:0006810;GO:0016020","mitochondrial transport;integral component of membrane;mitochondrial inner membrane;L-ornithine transmembrane transport;mitochondrial ornithine transport;L-ornithine transmembrane transporter activity;transport;membrane","Transport of substances into, out of or within a mitochondrion. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The directed movement of L-ornithine across a membrane. [GO_REF:0000069, GOC:krc, GOC:TermGenie, PMID:8195186];The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of or within a mitochondrion. [GOC:ai];Enables the transfer of L-ornithine from one side of a membrane to the other. L-ornithine is 2,5-diaminopentanoic acid. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0977400-01",0.589965365135887,0.7332914480725911,0.0491039215256978,"OS01G0977400",null,61.1552351655693,69.994457911911,80.0078154732513,55.6825561376509,"no","OS01G0977400","Pentatricopeptide repeat-containing protein At3g16610 [Source:Projected from Arabidopsis thaliana (AT3G16610) UniProtKB/Swiss-Prot;Acc:Q9LUS3]","Pentatricopeptide repeat domain containing protein. (Os01t0977400-01)",1,43196275,43198525,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0256300-00",0.590702687222738,0.7337944264651931,0.0229778112172538,"OS07G0256300",null,33.6353793410631,43.2318710632392,40.9796128033726,37.1217040917673,"no","OS07G0256300","Os07g0256300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X4J6]","Conserved hypothetical protein. (Os07t0256300-00)",7,8812366,8815314]
["OS11T0104300-01",0.591626645550116,0.7343972360390051,-0.113389648083155,"OS11G0104300",null,35.8251072056863,29.0645580529469,29.2298260611903,30.755061417987,"no","OS11G0104300",null,"Substrate of the SCF<sup>D3</sup> ubiquitination complex, Repressor of strigolactone (SL) signalling (Os11t0104300-01)",11,194178,196047]
["OS02T0765900-00",0.592060767858623,0.7346834238908511,-0.443093774336126,"OS02G0765900",null,332.341795024159,166.045062836437,178.668938452794,187.922286222187,"no","OS02G0765900","Os02g0765900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPW9]","Similar to Ferredoxin-nitrite reductase. (Os02t0765900-00)",2,32254101,32257127,"GO:0051536;GO:0016491;GO:0055114;GO:0020037","iron-sulfur cluster binding;oxidoreductase activity;oxidation-reduction process;heme binding","Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS12T0502600-01",0.593718317271815,0.735718639409995,0.41800869943434404,"OS12G0502600",null,13.25030095254,7.20531184387319,18.5383962681924,8.79198254805014,"no","OS12G0502600","Os12g0502600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YAH7]","Conserved hypothetical protein. (Os12t0502600-01)",12,19151501,19152088]
["OS06T0614300-01",0.5944955508928991,0.7363058494328061,-0.0799188683603821,"OS06G0614300",null,1610.15624644404,1713.01659138538,1447.45676626519,1696.63311494706,"no","OS06G0614300","Os06g0614300 protein [Source:UniProtKB/TrEMBL;Acc:Q69T18]","C-CAP/cofactor C-like domain domain containing protein. (Os06t0614300-01)",6,24574396,24582084,"GO:0007010;GO:0003779","cytoskeleton organization;actin binding","A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. [GOC:clt]"]
["OS04T0111900-01",0.5960021841562481,0.7374775720036331,0.141418001893829,"OS04G0111900",null,121.270427144902,118.245419243865,158.021355292552,106.161915123421,"no","OS04G0111900","OSJNBb0060M15.6 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQC5]","Similar to Resistance gene analog PIC22 (Fragment). (Os04t0111900-01);Similar to Resistance gene analog PIC22 (Fragment). (Os04t0111900-02)",4,681115,687690,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS04T0105050-00",0.5973124524069211,0.7384707852839211,0.21344601173837102,"OS04G0105050",null,155.346288543127,114.233094453831,134.012752254995,178.552234380204,"no","OS04G0105050","Os04g0105050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W617]","Hypothetical gene. (Os04t0105050-00)",4,327298,328772]
["OS01T0672400-02",0.598785945336334,0.739365000279501,-0.14563312949679702,"OS01G0672400","DI19-3",51.7389072709666,40.0645159562645,51.7457993862925,31.2428956287071,"no","OS01G0672400","Protein DEHYDRATION-INDUCED 19 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5QMP3]","Drought induced 19 family protein. (Os01t0672400-01);Similar to Protein DEHYDRATION-INDUCED 19 homolog 3. (Os01t0672400-02);Drought induced 19 family protein. (Os01t0672400-03);Drought induced 19 family protein. (Os01t0672400-04)",1,27601487,27604913]
["OS05T0359700-01",0.598697591154406,0.739365000279501,-0.15707082764513403,"OS05G0359700",null,50.4179084894142,32.0888786521189,36.640159829941,37.3555678149195,"no","OS05G0359700","Os05g0359700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WLJ3]","Conserved hypothetical protein. (Os05t0359700-01)",5,17135217,17135756]
["OS08T0494375-00",0.599853211434595,0.7400846147780861,-0.40921089462692706,"OS08G0494375",null,11.2117931136877,8.23464210728365,7.80564053397574,6.83820864848344,"no","OS08G0494375","Os08g0494375 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQ27]","Conserved hypothetical protein. (Os08t0494375-00)",8,24404103,24406262]
["OS04T0115700-02",0.601380896779752,0.741221121446466,-0.34041245796263503,"OS04G0115700",null,114.287839610648,194.39676810711,106.022369912648,137.781510471469,"no","OS04G0115700","Os04g0115700 protein [Source:UniProtKB/TrEMBL;Acc:C7J0S4]","Hypothetical protein. (Os04t0115700-01);Conserved hypothetical protein. (Os04t0115700-02)",4,937896,943051]
["OS07T0264000-02",0.60277057853922,0.7423160598214821,0.12444928798233601,"OS07G0264000",null,164.688765480237,212.225211555214,187.556270646239,223.314466502555,"no","OS07G0264000","Os07g0264000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X4I9]","Conserved hypothetical protein. (Os07t0264000-01);Conserved hypothetical protein. (Os07t0264000-02);Conserved hypothetical protein. (Os07t0264000-03);Conserved hypothetical protein. (Os07t0264000-04)",7,9344631,9349461]
["OS06T0494000-02",0.603528037979805,0.7426515972608411,-0.0530529384742436,"OS06G0494000",null,47.7230714333863,55.4326857095759,49.0835478227177,50.3477127144944,"no","OS06G0494000","Os06g0494000 protein [Source:UniProtKB/TrEMBL;Acc:Q651J2]","Paired amphipathic helix domain containing protein. (Os06t0494000-01);Hypothetical conserved gene. (Os06t0494000-02)",6,17156157,17159843,"GO:0016020;GO:0016021;GO:0000785;GO:0000118;GO:0016575;GO:0000122;GO:0004407;GO:0001106;GO:0005634;GO:0006355","membrane;integral component of membrane;chromatin;histone deacetylase complex;histone deacetylation;negative regulation of transcription from RNA polymerase II promoter;histone deacetylase activity;RNA polymerase II transcription corepressor activity;nucleus;regulation of transcription, DNA-templated","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. [GOC:elh, PMID:20404130];A protein complex that possesses histone deacetylase activity. [GOC:mah];The modification of histones by removal of acetyl groups. [GOC:ai];Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. [EC:3.5.1.98, PMID:9893272];Interacting selectively and non-covalently with an RNA polymerase II repressing transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery. [GOC:txnOH, PMID:10213677, PMID:16858867];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS09T0476800-01",0.6036956888522911,0.7426515972608411,0.10898314102487,"OS09G0476800",null,45.8664263741769,40.1438802730078,37.0767925363847,55.6825561376509,"no","OS09G0476800","Fasciclin-like arabinogalactan-protein 2-like [Source:UniProtKB/TrEMBL;Acc:Q651Y5]","FAS1 domain domain containing protein. (Os09t0476800-01)",9,18257644,18258698]
["OS11T0687800-02",0.604469080327908,0.74288310890713,0.18577646130483602,"OS11G0687800",null,286.055828022585,326.968995300213,431.261639364787,266.010557101051,"no","OS11G0687800","NB-ARC domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QZG5]","NB-ARC domain containing protein. (Os11t0687800-01);NB-ARC domain containing protein. (Os11t0687800-02)",11,27884593,27890936,"GO:0005886;GO:0007165;GO:0043531;GO:0006952","plasma membrane;signal transduction;ADP binding;defense response","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS10T0345600-01",0.606388364986836,0.7444796997017411,-0.48250524224614,"OS10G0345600",null,10.5815152038827,6.46979263275141,3.19541655482669,9.00877860853737,"no","OS10G0345600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q339L3]","Protein of unknown function DUF566 family protein. (Os10t0345600-01)",10,10337377,10339305,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0406900-01",0.607929039422182,0.745711969021821,0.0537687110973858,"OS09G0406900",null,56.7150550477002,38.0345346688224,44.6639942614659,53.6835076260661,"no","OS09G0406900","Os09g0406900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XM39]","Hypothetical protein. (Os09t0406900-01);Non-protein coding transcript. (Os09t0406900-02)",9,14351463,14360479,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0179050-00",0.6095361271749471,0.746993492075772,0.500650144841986,"OS05G0179050",null,99.4164592178741,67.2719098187485,91.4564731499333,144.382735098749,"no","OS05G0179050","Os05g0179050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KK89]","Hypothetical protein. (Os05t0179050-00)",5,4713637,4715177]
["OS01T0721000-01",0.6113535277310761,0.748457392768708,0.0221239280584072,"OS01G0721000",null,72.3670282792569,54.5545039607542,54.6394837378301,74.2434081835345,"no","OS01G0721000","Fusarium resistance protein I2C-5-like [Source:UniProtKB/TrEMBL;Acc:Q8W0E0]","NB-ARC domain containing protein. (Os01t0721000-01)",1,30059264,30060869,"GO:0005886;GO:0007165;GO:0006952","plasma membrane;signal transduction;defense response","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS05T0578900-01",0.612398170801248,0.7491187105349021,-0.18385232180691402,"OS05G0578900","GATA15",22.4235862273754,17.4986144779778,18.5383962681924,16.6070781463169,"no","OS05G0578900","GATA transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:Q6L5E5]","GAGA-type zinc finger transcription factor, Organogenesis (Os05t0578900-01)",5,28817605,28818839,"GO:0005667;GO:0001085;GO:0045944;GO:0001228;GO:0003682;GO:0006366;GO:0030154;GO:0005634;GO:0000977;GO:0009908;GO:0003700;GO:0046872;GO:0003677;GO:0043565;GO:0006355;GO:0006351;GO:0008270;GO:0048510;GO:0048437","transcription factor complex;RNA polymerase II transcription factor binding;positive regulation of transcription from RNA polymerase II promoter;transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding;chromatin binding;transcription from RNA polymerase II promoter;cell differentiation;nucleus;RNA polymerase II regulatory region sequence-specific DNA binding;flower development;transcription factor activity, sequence-specific DNA binding;metal ion binding;DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated;zinc ion binding;regulation of timing of transition from vegetative to reproductive phase;floral organ development","A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. [GOC:jl];Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II. [GOC:txnOH];Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a sequence of DNA that is in the transcription regulatory region for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter. [GOC:krc];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs. [GOC:jid, PMID:8974397];The process whose specific outcome is the progression of the floral organ over time, from its formation to the mature structure. [GOC:go_curators, GOC:PO_curators, PO:0025395]"]
["OS08T0448900-00",0.612661992803185,0.749291429651452,0.0169218340701709,"OS08G0448900",null,41.4478204321011,55.8326486185936,44.4278986665146,54.0003223057364,"no","OS08G0448900","Os08g0448900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGD5]","Conserved hypothetical protein. (Os08t0448900-00)",8,21921124,21921598]
["OS04T0339400-01",0.6141585705828211,0.7503708169417881,1.81328871597873,"OS04G0339400",null,12.2310470331138,7.20531184387319,61.4694192050589,6.83820864848344,"no","OS04G0339400","Probable aldo-keto reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XQ45]","Aldo/keto reductase family protein. (Os04t0339400-01)",4,16001505,16005150,"GO:0055114;GO:0016491","oxidation-reduction process;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS09T0100800-01",0.615299518004032,0.7511618216351811,0.0193284799187692,"OS09G0100800",null,50.9626959713077,46.3198618534705,58.542304004818,40.0523649411173,"no","OS09G0100800","Os09g0100800 protein [Source:UniProtKB/TrEMBL;Acc:Q651G2]","Protein of unknown function DUF573 domain containing protein. (Os09t0100800-01)",9,147568,152791,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0629000-00",0.616632822745752,0.751995763467033,0.031385002452915596,"OS01G0629000",null,48.9241881324554,50.4371829071123,40.9796128033726,60.5669908865676,"no","OS01G0629000","Os01g0629000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5I6]","Hypothetical conserved gene. (Os01t0629000-00)",1,25122508,25127466]
["OS11T0487700-00",0.6179601672549311,0.752998007018413,0.47348665226961106,"OS11G0487700",null,7.1347774359830805,4.11732105364182,5.8542304004818,9.76886949783349,"no","OS11G0487700","Os11g0487700 protein [Source:UniProtKB/TrEMBL;Acc:Q2R453]","Conserved hypothetical protein. (Os11t0487700-00)",11,17200652,17201107]
["OS02T0162200-00",0.6183332698131261,0.7532789163117181,-0.27289760895148,"OS02G0162200",null,16.3080627108185,30.8799079023137,16.5869861346984,22.468399845017,"no","OS02G0162200","Os02g0162200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFA0]","Similar to Early salt stress and cold acclimation-induced protein 2-3. (Os02t0162200-00)",2,3353590,3358320,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS08T0378800-02",0.6194361845135381,0.753879137645124,0.11066746418079,"OS08G0378800",null,35.6982379561474,43.4806208046353,36.6139153886788,48.8776883406959,"no","OS08G0378800","Os08g0378800 protein [Source:UniProtKB/TrEMBL;Acc:Q7EYN2]","Sterile alpha motif homology 2 domain containing protein. (Os08t0378800-01);Sterile alpha motif homology 2 domain containing protein. (Os08t0378800-02)",8,17814500,17817621]
["OS04T0323500-02",0.6207542633076171,0.754837184182063,0.44231019945737704,"OS04G0323500",null,3.21420145242448,8.11509525597824,7.6923513957953,7.70165236480735,"no","OS04G0323500","Os04g0323500 protein [Source:UniProtKB/TrEMBL;Acc:Q0JE56]","Hypothetical protein. (Os04t0323500-01);Conserved hypothetical protein. (Os04t0323500-02)",4,14927225,14929678]
["OS02T0611000-02",0.6227324087911611,0.7565070363868851,-0.570481498332444,"OS02G0611000",null,8.8428890458679,5.7798725080235105,4.37178010059505,5.47507064820846,"no","OS02G0611000","Os02g0611000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLJ6]","Hypothetical gene. (Os02t0611000-01);Conserved hypothetical protein. (Os02t0611000-02)",2,24025156,24032288]
["OS01T0235200-01",0.6244077161134001,0.7579140069204731,-0.018935417115762798,"OS01G0235200",null,95.4248815363201,68.6983100817463,92.2794750893111,69.7036693672527,"no","OS01G0235200","Protein DEFECTIVE IN MERISTEM SILENCING 3 [Source:Projected from Arabidopsis thaliana (AT3G49250) UniProtKB/Swiss-Prot;Acc:Q94A79]","Conserved hypothetical protein. (Os01t0235200-01);Conserved hypothetical protein. (Os01t0235200-02)",1,7460350,7465533,"GO:0042803;GO:0006306;GO:0031047;GO:0070921;GO:0080188;GO:0000419;","protein homodimerization activity;DNA methylation;gene silencing by RNA;regulation of production of siRNA involved in chromatin silencing by small RNA;RNA-directed DNA methylation;DNA-directed RNA polymerase V complex;","Interacting selectively and non-covalently with an identical protein to form a homodimer. [GOC:jl];The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:0198506732];Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];Any process that modulates the frequency, rate or extent of the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA. [GOC:mah];An epigenetic RNA-based gene silencing process first elucidated in plants whereby 24-nt small interfering RNAs (siRNAs) guide DNA methyltransferases to the siRNA-generating genomic loci and other loci that are homologous to the siRNAs for de novo DNA methylation. In general this process consists of three phases: biogenesis of siRNAs, scaffold RNA production, and the formation of the guiding complex that recruits de novo DNA methyltransferases to the target loci. [PMID:21420348];RNA polymerase V is a multisubunit RNA polymerase complex found in the nucleus of plants and involved in accumulation of siRNAs and in DNA methylation-dependent silencing of endogenous repeated sequences. Pol V is composed of subunits that are paralogous or identical to the 12 subunits of Pol II. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The second largest subunit is also found in RNA polymerase IVa, while the largest subunit is found only in the IVa complex and contains an extended C-terminal domain (CTD) that includes multiple repeats of a 16 amino-acid consensus sequence as well as other sequences. The remainder of the complex is composed of smaller subunits. [GOC:krc, GOC:mtg_sensu, PMID:16140984, PMID:19110459];"]
["OS11T0229333-00",0.625731971264129,0.758819206151446,-0.126849192641935,"OS11G0229333",null,61.1708789361935,68.8246844998564,48.2347815279777,70.8189792363124,"no","OS11G0229333","Os11g0229333 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y0E2]","Hypothetical gene. (Os11t0229333-00)",11,6871951,6878271]
["OS02T0612200-01",0.6260011557898231,0.7590007622668331,-0.143237222966056,"OS02G0612200",null,20.3850783885231,20.5866052682091,18.5383962681924,18.5608520458836,"no","OS02G0612200","Os02g0612200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K632]","NB-ARC domain containing protein. (Os02t0612200-01)",2,24098151,24099882,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS04T0521600-01",0.62706449615159,0.759638163617105,0.5861226174691481,"OS04G0521600",null,5.09626959713077,2.05866052682091,3.90282026698787,6.83820864848344,"no","OS04G0521600","Os04g0521600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCW9]","Similar to OSIGBa0131L05.8 protein. (Os04t0521600-01)",4,26108162,26111320]
["OS01T0374000-01",0.628620063795945,0.760708210444557,0.5819060571714071,"OS01G0374000",null,3.05776175827846,4.11732105364182,4.87852533373483,5.86132169870009,"no","OS01G0374000","Os01g0374000 protein [Source:UniProtKB/TrEMBL;Acc:Q93WM2]","Similar to Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29) (GST class- phi). (Os01t0374000-01)",1,15410788,15412081,"GO:0005737;GO:0004364;GO:0016740;GO:0006749","cytoplasm;glutathione transferase activity;transferase activity;glutathione metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732]"]
["OS04T0551300-01",0.6294086508812311,0.7609391437506771,0.14836034320528602,"OS04G0551300",null,273.270279734602,231.147537751518,314.717910692054,244.332965112526,"no","OS04G0551300","Os04g0551300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JB77]","Similar to Growth regulator like protein. (Os04t0551300-01);Similar to OSIGBa0122F23.8 protein. (Os04t0551300-02)",4,27608423,27612487,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0142100-01",0.631041456530271,0.762174215927642,0.317086615182028,"OS01G0142100","EGY2",14.4529253200872,17.0284414254153,23.059011098471,16.1608599250958,"no","OS01G0142100","Probable zinc metalloprotease EGY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0JQS5]","Peptidase M50 family protein. (Os01t0142100-01);Similar to Metalloendopeptidase. (Os01t0142100-02)",1,2266281,2271051,"GO:0016020;GO:0016021;GO:0031969;GO:0008237;GO:0009536;GO:0009507;GO:0006508;GO:0016787;GO:0008233;GO:0009535","membrane;integral component of membrane;chloroplast membrane;metallopeptidase activity;plastid;chloroplast;proteolysis;hydrolase activity;peptidase activity;chloroplast thylakoid membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]"]
["OS08T0506350-01",0.631101076927517,0.762174215927642,0.11626069908821901,"OS08G0506350",null,25.4813479856539,19.5572750047987,21.4655114684333,27.3528345939338,"no","OS08G0506350","Os08g0506350 protein [Source:UniProtKB/TrEMBL;Acc:C7J639]","Conserved hypothetical protein. (Os08t0506350-01)",8,25053426,25056287]
["OS06T0358800-01",0.632084175445499,0.7627853113801351,0.0807027276139361,"OS06G0358800",null,37.7123950187677,37.0558894827764,47.8095482706014,31.2603823930672,"no","OS06G0358800","Ribonuclease 3-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q69KJ0]","Ribonuclease III domain containing protein. (Os06t0358800-01)",6,14770312,14773944,"GO:0016442;GO:0030422;GO:0004525;GO:0003723;GO:0005634;GO:0005737;GO:0090501;GO:0090502;GO:0004519;GO:0004518;GO:0006396;GO:0090305;GO:0046872;GO:0016787","RISC complex;production of siRNA involved in RNA interference;ribonuclease III activity;RNA binding;nucleus;cytoplasm;RNA phosphodiester bond hydrolysis;RNA phosphodiester bond hydrolysis, endonucleolytic;endonuclease activity;nuclease activity;RNA processing;nucleic acid phosphodiester bond hydrolysis;metal ion binding;hydrolase activity","A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation. [PMID:10749213, PMID:15145345];Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. [GOC:mah, PMID:11524674];Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. [PMID:11157775, PMID:15242644];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS06T0285400-01",0.634202506956919,0.7645866542714781,-0.11024299078958,"OS06G0285400",null,47.534296424147,40.4246067084834,31.1338616752896,50.3540818661054,"no","OS06G0285400","Os06g0285400 protein [Source:UniProtKB/TrEMBL;Acc:Q5VNF2]","Similar to Serine/threonine-specific kinase like protein. (Os06t0285400-01);Similar to predicted protein. (Os06t0285400-02)",6,10146888,10149402,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0030246;GO:0016310;GO:0016301","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;carbohydrate binding;phosphorylation;kinase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS08T0408300-02",0.635759773193568,0.765708699909721,0.0917860130939397,"OS08G0408300",null,28.5391097439323,23.6745960584405,32.1982672026499,23.4452867948004,"no","OS08G0408300","Os08g0408300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGG5]","Conserved hypothetical protein. (Os08t0408300-02)",8,19532162,19533149]
["OS10T0158400-00",0.637015938208165,0.7665870074104241,-0.934063005478806,"OS10G0158400",null,3.77999383001908,12.1745925465282,2.9271152002409,5.42323264663085,"no","OS10G0158400","Chalcone synthase 8, putative [Source:UniProtKB/TrEMBL;Acc:Q7XGM8]","Similar to Chalcone and stilbene synthases, N-terminal domain containing protein. (Os10t0158400-00)",10,3696797,3698817,"GO:0016746;GO:0009058;GO:0016747;GO:0008152;GO:0003824;GO:0016740","transferase activity, transferring acyl groups;biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0233000-01",0.63880549143911,0.76792387859326,0.0323302003974485,"OS05G0233000",null,29.5583636633585,26.7625868486719,32.1982672026499,25.3990606943671,"no","OS05G0233000","Os05g0233000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKD7]","Conserved hypothetical protein. (Os05t0233000-01)",5,8080835,8082069,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0585200-01",0.639243086736984,0.7682144158602331,-0.21936757778655,"OS02G0585200",null,25.4813479856539,15.4399539511568,15.6112810679515,19.537738995667,"no","OS02G0585200","Os02g0585200 protein [Source:UniProtKB/TrEMBL;Acc:Q6YY29]","Heavy metal transport/detoxification protein domain containing protein. (Os02t0585200-01)",2,22562006,22562946,"GO:0046916;GO:0030001;GO:0046914;GO:0005737","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS11T0453900-01",0.6401872832710871,0.7689085175832161,-0.16911869049568,"OS11G0453900","RAB16D",13.25030095254,10.1687957697156,15.3846121419296,5.44400041813535,"no","OS11G0453900","Dehydrin Rab16D [Source:UniProtKB/Swiss-Prot;Acc:Q2R4Z8]","Dehydrin RAB 16D. (Os11t0453900-01)",11,15320288,15321526,"GO:0005829;GO:0009415;GO:0006950;GO:0009631;GO:0009414;GO:0009737","cytosol;response to water;response to stress;cold acclimation;response to water deprivation;response to abscisic acid","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures. [GOC:syr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]"]
["OS03T0343800-00",0.642032192083491,0.7702225382273321,0.417610117193968,"OS03G0343800",null,6.11552351655692,4.11732105364182,6.82993546722877,6.83820864848344,"no","OS03G0343800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10LL8]","Conserved hypothetical protein. (Os03t0343800-00)",3,12809226,12809783,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0518651-00",0.642897018983244,0.770749871447814,0.34186392043394503,"OS01G0518651",null,2.03850783885231,7.20531184387319,5.8542304004818,5.86132169870009,"no","OS01G0518651","Os01g0518651 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3B0]","Leucine-rich repeat domain containing protein. (Os01t0518651-00)",1,18405728,18408073,"GO:0005886;GO:0007165;GO:0016787;GO:0008152;GO:0003824","plasma membrane;signal transduction;hydrolase activity;metabolic process;catalytic activity","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS08T0413200-00",0.6439724317381911,0.7712828811254571,0.13387626396417301,"OS08G0413200",null,18.2303684774092,16.4692842145673,20.4898064016863,17.5839650961003,"no","OS08G0413200","Os08g0413200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFR2]","Protein of unknown function DUF1262 domain containing protein. (Os08t0413200-00)",8,19766166,19767472]
["OS03T0245700-02",0.6451816446724391,0.771853301277797,-0.12378394607702,"OS03G0245700",null,62.4500569466151,47.4609598835809,37.1920049427903,63.6818330551502,"no","OS03G0245700","3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:Q10P61]","Thiolase-like, subgroup domain containing protein. (Os03t0245700-02);Similar to senescence-associated protein 15. (Os03t0245700-03)",3,7686713,7688842,"GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0016746;GO:0016740","fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;integral component of membrane;transferase activity, transferring acyl groups;transferase activity","The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0127300-02",0.6450906461946391,0.771853301277797,-0.578465175164664,"OS05G0127300",null,37.6195607495727,43.2924184281738,21.6901245568673,32.4946730300622,"no","OS05G0127300","Os05g0127300 protein [Source:UniProtKB/TrEMBL;Acc:C7J2D1]","Serine/threonine protein kinase domain containing protein. (Os05t0127300-01);Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein. (Os05t0127300-02)",5,1547307,1550049,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0443850-00",0.646610029106726,0.7728963070918891,-0.7284364541686761,"OS04G0443850",null,16.2975143019022,8.73718396173124,6.86715125835931,8.242733036042,"no","OS04G0443850","Os04g0443850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KJ42]","Hypothetical protein. (Os04t0443850-00)",4,22103484,22105071]
["OS12T0235600-01",0.647901929349191,0.7736610492178051,0.0878155105973367,"OS12G0235600",null,89.6943449095016,62.7891460680378,90.7405712074679,71.3127473341845,"no","OS12G0235600","Os12g0235600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8H0]","Conserved hypothetical protein. (Os12t0235600-01)",12,7409322,7411885]
["OS05T0456300-02",0.6488123591786731,0.774135561884981,-1.01748238139569,"OS05G0456300",null,33.6758075031206,29.2360143301874,17.2128540302658,13.8641786889918,"no","OS05G0456300","Os05g0456300 protein [Source:UniProtKB/TrEMBL;Acc:B7EYZ0]","Aldose reductase. (Os05t0456300-01);Similar to cDNA clone:001-207-F04, full insert sequence. (Os05t0456300-02)",5,22409907,22413310,"GO:0016491;GO:0055114;GO:0008106","oxidoreductase activity;oxidation-reduction process;alcohol dehydrogenase (NADP+) activity","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+. [EC:1.1.1.2]"]
["OS11T0626700-02",0.650640163351178,0.775583523269685,0.32901207369706204,"OS11G0626700",null,7.21265463675989,16.2814128579601,9.52621567630304,19.9859251908806,"no","OS11G0626700","Os11g0626700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y4K9]","Hypothetical conserved gene. (Os11t0626700-01);Hypothetical conserved gene. (Os11t0626700-02)",11,24561650,24570319]
["OS05T0498300-01",0.6517138167657951,0.776259716346346,0.125240326739226,"OS05G0498300","MSH5",184.153835717008,193.887667650114,236.675511568973,175.650351385815,"no","OS05G0498300","DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:Q6L4V0]","DNA mismatch repair protein MutS, core domain containing protein. (Os05t0498300-01)",5,24522895,24534335,"GO:0000795;GO:0051321;GO:0006298;GO:0030983;GO:0005694;GO:0003677;GO:0005634;GO:0008094;GO:0005524;GO:0000166;GO:0007131;GO:0045143;GO:0000712;GO:0051026","synaptonemal complex;meiotic cell cycle;mismatch repair;mismatched DNA binding;chromosome;DNA binding;nucleus;DNA-dependent ATPase activity;ATP binding;nucleotide binding;reciprocal meiotic recombination;homologous chromosome segregation;resolution of meiotic recombination intermediates;chiasma assembly","A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other.  Transverse filaments connect the lateral elements to the central element. [DOI:10.5772/29752, GOC:elh];Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. [GOC:ai];A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:0198506732, PMID:11687886];Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. [GOC:mah];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779];The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the first division of the meiotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner; this pairing off, referred to as synapsis, permits genetic recombination. One homolog (both sister chromatids) of each morphologic type goes into each of the resulting chromosome sets. [GOC:ai, ISBN:0815316194];The cleavage and rejoining of intermediates, such as Holliday junctions, formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged. [GOC:elh, PMID:11733053];The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids. [http://www.onelook.com]"]
["OS01T0300900-01",0.652053863475881,0.776442476098221,-0.20004222644212202,"OS01G0300900",null,37.1013239313745,22.4773864248007,30.3252201419447,21.5395416599262,"no","OS01G0300900","Os01g0300900 protein [Source:UniProtKB/TrEMBL;Acc:Q94D04]","Galactose oxidase/kelch, beta-propeller domain containing protein. (Os01t0300900-01);Hypothetical conserved gene. (Os01t0300900-02)",1,11058878,11063872]
["OS04T0154000-00",0.653682773544868,0.7776386612157461,0.12914260875945302,"OS04G0154000",null,18.3465705496708,16.4692842145673,18.5383962681924,19.537738995667,"no","OS04G0154000","OSJNBa0089E12.1 protein [Source:UniProtKB/TrEMBL;Acc:Q7XMV9]","Similar to OSIGBa0147M20.4 protein. (Os04t0154000-00)",4,3682118,3684160,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0132801-01",0.654730163794182,0.778369429325649,0.0904657747447125,"OS06G0132801",null,14.2695548719662,22.64526579503,20.5326374211446,18.7710841635212,"no","OS06G0132801","Os06g0132801 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WS88]","Hypothetical conserved gene. (Os06t0132801-01)",6,1761433,1762875]
["OS06T0527201-01",0.656213344866438,0.7792836363493381,0.0320021293847933,"OS06G0527201",null,221.575923731058,262.18779647601,298.032509391073,196.582050261836,"no","OS06G0527201","Os06g0527201 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXF4]","Hypothetical gene. (Os06t0527201-01)",6,19552055,19553885]
["OS08T0414900-00",0.6578311371864191,0.780537376337701,0.6767658382345251,"OS08G0414900",null,13.4541517364252,4.86206310653754,22.4412165351802,6.83820864847536,"no","OS08G0414900","Os08g0414900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFZ5]","Hypothetical gene. (Os08t0414900-00)",8,19843567,19844028,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0558250-00",0.659460079476758,0.7817281828245181,0.16262167360871702,"OS09G0558250",null,423.010433316604,421.860815018232,402.1036758154,543.577039148314,"no","OS09G0558250","Os09g0558250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQU0]","Hypothetical protein. (Os09t0558250-00)",9,22189081,22191645,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0674600-01",0.659681434216259,0.7817564502556681,-0.262394266974226,"OS04G0674600","YSL10",7.1347774359830805,9.2639723706941,3.90282026698787,9.76886949783349,"no","OS04G0674600","Probable metal-nicotianamine transporter YSL10 [Source:UniProtKB/Swiss-Prot;Acc:Q0J932]","Similar to H0103C06.1 protein. (Os04t0674600-01)",4,34440331,34444073,"GO:0022857;GO:0005886;GO:0006810;GO:0055085;GO:0016020;GO:0016021","transmembrane transporter activity;plasma membrane;transport;transmembrane transport;membrane;integral component of membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0633100-02",0.6610055324792871,0.7827838686889871,-0.399389032050706,"OS07G0633100",null,6.05517507424577,12.0374633246643,2.56004193956481,11.1574219256206,"no","OS07G0633100","Os07g0633100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9B4]","Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-01);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-02);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-03);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-04);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-05)",7,26259266,26263678,"GO:0030247;GO:0004553;GO:0046658","polysaccharide binding;hydrolase activity, hydrolyzing O-glycosyl compounds;anchored component of plasma membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah]"]
["OS06T0320200-01",0.6623804287401021,0.783652681957388,0.0241396158978913,"OS06G0320200",null,23.4428401468015,22.64526579503,20.4898064016863,26.3759476441504,"no","OS06G0320200","Os06g0320200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVX1]","Similar to OSIGBa0135C13.7 protein. (Os06t0320200-01)",6,12437683,12442790,"GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787","glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0958900-02",0.663791019508992,0.7845013047092461,-0.350217307995736,"OS01G0958900",null,246.10735079996,275.162360915753,203.909759842599,205.008568140026,"no","OS01G0958900","Os01g0958900 protein [Source:UniProtKB/TrEMBL;Acc:Q5JN46]","Similar to MLH1 protein (Fragment). (Os01t0958900-01);Similar to MLH1 protein (Fragment). (Os01t0958900-02)",1,42268902,42274913,"GO:0000795;GO:0016887;GO:0003723;GO:0006298;GO:0030983;GO:0032389;GO:0005712;GO:0003676;GO:0005524;GO:0003697;GO:0006312;GO:0009555;GO:0009845;GO:0010154;GO:0048316;GO:0000790","synaptonemal complex;ATPase activity;RNA binding;mismatch repair;mismatched DNA binding;MutLalpha complex;chiasma;nucleic acid binding;ATP binding;single-stranded DNA binding;mitotic recombination;pollen development;seed germination;fruit development;seed development;nuclear chromatin","A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other.  Transverse filaments connect the lateral elements to the central element. [DOI:10.5772/29752, GOC:elh];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:0198506732, PMID:11687886];Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. [GOC:mah];A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MLH1 and PMS2. [GOC:vk];A connection formed between chromatids, visible during meiosis, thought to be the point of the interchange involved in crossing-over. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with single-stranded DNA. [GOC:elh, GOC:vw, PMID:22976174];The exchange, reciprocal or nonreciprocal, of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. [GOC:elh];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis. [PMID:8281041];The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant. [GOC:sm];The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus. [GOC:elh, PMID:20404130]"]
["OS07T0468900-02",0.6649607080945631,0.7852761607090981,-0.0421227721643092,"OS07G0468900",null,31.9849538529675,25.7585297309686,33.3436438928133,22.7382618037124,"no","OS07G0468900","Os07g0468900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X680]","Hypothetical gene. (Os07t0468900-01);Hypothetical conserved gene. (Os07t0468900-02)",7,16732847,16735712]
["OS05T0444750-01",0.665120665523805,0.7853132854028171,0.392551640729971,"OS05G0444750",null,8.02804632209772,3.22715126377853,9.70977224831871,5.06507304782788,"no","OS05G0444750","Os05g0444750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WN43]","Hypothetical conserved gene. (Os05t0444750-01)",5,21761628,21762740]
["OS02T0820500-01",0.666437116813414,0.7862599163146221,0.0614062853469526,"OS02G0820500",null,28.5391097439323,25.7332565852614,22.4412165351802,34.1910432424172,"no","OS02G0820500","LOB domain protein-like [Source:UniProtKB/TrEMBL;Acc:Q6K713]","Similar to LOB domain protein 17. (Os02t0820500-01)",2,35227503,35228609]
["OS03T0802300-02",0.6678561180957721,0.787174110569114,0.10653585968968601,"OS03G0802300",null,68.2754347841727,78.3702882950184,97.2779289882916,60.6067144631214,"no","OS03G0802300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q84SZ4]","Hypothetical conserved gene. (Os03t0802300-01);Conserved hypothetical protein. (Os03t0802300-02);Hypothetical conserved gene. (Os03t0802300-03)",3,33474343,33480206]
["OS03T0173500-01",0.6693075347702121,0.78813120157256,0.268314952229675,"OS03G0173500",null,31.7091041558346,24.3674921271072,42.8041237776134,24.7345446581352,"no","OS03G0173500","Os03g0173500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DUQ3]","Similar to Kinase associated protein phosphatase. (Os03t0173500-01);Similar to Kinase associated protein phosphatase. (Os03t0173500-02)",3,3929685,3935653,"GO:0000139;GO:0048280;GO:0008565;GO:0006886;GO:0005737;GO:0016020;GO:0006470;GO:0004722","Golgi membrane;vesicle fusion with Golgi apparatus;protein transporter activity;intracellular protein transport;cytoplasm;membrane;protein dephosphorylation;protein serine/threonine phosphatase activity","The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi. [GOC:jid];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf]"]
["OS05T0469800-00",0.6707029710881011,0.7890683958829251,-0.37264930183542605,"OS05G0469800",null,93.3579835752326,52.7258950610414,43.7190914368063,69.1106709312893,"no","OS05G0469800","Os05g0469800 protein [Source:UniProtKB/TrEMBL;Acc:Q6AUJ8]","Pyruvate decarboxylase (EC 4.1.1.1) (Fragment). (Os05t0469800-00)",5,23065514,23068193,"GO:0016831;GO:0005622;GO:0030976;GO:0000287;GO:0046872;GO:0003824","carboxy-lyase activity;intracellular;thiamine pyrophosphate binding;magnesium ion binding;metal ion binding;catalytic activity","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0630100-01",0.6718967997388251,0.789833199319772,-0.202662453450068,"OS12G0630100",null,20.3850783885231,12.3519631609255,13.7710229191097,14.6756809727374,"no","OS12G0630100","Os12g0630100 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLS8]","Thaumatin protein, Tolerance to nitrogen deficiency (Os12t0630100-01)",12,26956203,26956894]
["OS03T0856200-03",0.6729091997189941,0.7903157168979951,0.518230420992912,"OS03G0856200",null,3.45542886250498,9.52322411660977,7.39791049782292,11.1900834278449,"no","OS03G0856200","ATP-dependent DNA helicase 2 subunit KU80 [Source:Projected from Arabidopsis thaliana (AT1G48050) UniProtKB/Swiss-Prot;Acc:Q9FQ09]","Similar to KAP-2. (Os03t0856200-01);Similar to Longin-like. (Os03t0856200-02);Similar to KAP-2. (Os03t0856200-03);Similar to KAP-2. (Os03t0856200-04)",3,36110059,36119639,"GO:0042162;GO:0000784;GO:0005515;GO:0016817;GO:0043564;GO:0006303;GO:0006310;GO:0000723;GO:0032508;GO:0004003;GO:0006974;GO:0006281;GO:0004386;GO:0003684;GO:0003677;GO:0016787;GO:0005634;GO:0005524;GO:0000166;GO:0003690;GO:0006302;GO:0009408;GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0015031;GO:0090305;GO:0006810","telomeric DNA binding;nuclear chromosome, telomeric region;protein binding;hydrolase activity, acting on acid anhydrides;Ku70:Ku80 complex;double-strand break repair via nonhomologous end joining;DNA recombination;telomere maintenance;DNA duplex unwinding;ATP-dependent DNA helicase activity;cellular response to DNA damage stimulus;DNA repair;helicase activity;damaged DNA binding;DNA binding;hydrolase activity;nucleus;ATP binding;nucleotide binding;double-stranded DNA binding;double-strand break repair;response to heat;RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;protein transport;nucleic acid phosphodiester bond hydrolysis;transport","Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end. [GOC:jl, SO:0000624];The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins. [GOC:elh];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Catalysis of the hydrolysis of any acid anhydride. [GOC:jl];Heterodimeric protein complex composed of a 70 kDa and a 80 kDa subunit, binds DNA through a channel formed by the heterodimer. Functions in DNA double stranded break repair, chromosome maintenance, transcription regulation, V(D)J recombination, and activation of DNA-PK. [PMID:12518983];The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear. [GOC:rph, PMID:10827453, PMID:24837021];Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:0198506732];Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix. [EC:3.6.1.3, GOC:jl];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with damaged DNA. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Interacting selectively and non-covalently with double-stranded DNA. [GOC:elh, GOC:vw];The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. [GOC:elh];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS03T0372500-01",0.673068997649612,0.79039105262678,0.0701348060382689,"OS03G0372500",null,4.08997420318473,15.4399539511568,9.75705066746967,10.7457564476168,"no","OS03G0372500","Protein phosphatase 2C 32 [Source:Projected from Arabidopsis thaliana (AT2G46920) UniProtKB/Swiss-Prot;Acc:Q8RWN7]","Hypothetical gene. (Os03t0372500-01);Similar to TA11 protein (Fragment). (Os03t0372500-02);Similar to TA11 protein (Fragment). (Os03t0372500-03)",3,14656235,14664804,"GO:0006470;GO:0004722;GO:0003824;GO:0005543;GO:0006355;GO:0010074;GO:0005886;","protein dephosphorylation;protein serine/threonine phosphatase activity;catalytic activity;phospholipid binding;regulation of transcription, DNA-templated;maintenance of meristem identity;plasma membrane;","The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:tb];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];"]
["OS02T0207900-01",0.674622067916627,0.791478173361681,-0.0342149717167745,"OS02G0207900",null,21.4043323079492,20.5866052682091,18.5383962681924,22.468399845017,"no","OS02G0207900","Caffeoylshikimate esterase [Source:Projected from Arabidopsis thaliana (AT1G52760) UniProtKB/Swiss-Prot;Acc:Q9C942]","Similar to esterase/lipase/thioesterase family protein. (Os02t0207900-01)",2,6038222,6039551,"GO:0016020;GO:0006629;GO:0016298;GO:0003846;GO:0004622;GO:0016787;GO:0090430;GO:0006979;GO:0010043;GO:0042542;GO:0046686;GO:0005783;GO:0005794;GO:0005886;GO:0009506","membrane;lipid metabolic process;lipase activity;2-acylglycerol O-acyltransferase activity;lysophospholipase activity;hydrolase activity;caffeoyl-CoA: alcohol caffeoyl transferase activity;response to oxidative stress;response to zinc ion;response to hydrogen peroxide;response to cadmium ion;endoplasmic reticulum;Golgi apparatus;plasma membrane;plasmodesma","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of a lipid or phospholipid. [GOC:mah];Catalysis of the reaction: acyl-CoA + 2-acylglycerol = CoA + diacylglycerol. [EC:2.3.1.22];Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate. [EC:3.1.1.5];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: caffeoyl-CoA + a saturated primary alcohol = an alkyl caffeate + CoA. [GOC:pz];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:sm];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS09T0376900-02",0.675771592363958,0.7921337358004781,-0.22985928201642,"OS09G0376900","HAK23",79.7908950000115,55.856308966095,40.3024993814156,75.3663212777226,"no","OS09G0376900","Potassium transporter 23 [Source:UniProtKB/Swiss-Prot;Acc:Q6H4R6]","Similar to Potassium transporter 13 (AtPOT13) (AtKT5). (Os09t0376900-01);Similar to Potassium transporter 23. (Os09t0376900-02)",9,12662824,12667523,"GO:0071805;GO:0015079;GO:0016020;GO:0016021;GO:0006810;GO:0006813;GO:0006811;GO:0009507","potassium ion transmembrane transport;potassium ion transmembrane transporter activity;membrane;integral component of membrane;transport;potassium ion transport;ion transport;chloroplast","A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS10T0104300-00",0.6775434396239961,0.7934496211963791,-0.48830308677971906,"OS10G0104300",null,3.05776175827846,9.2639723706941,6.82993546722877,1.9537738995667,"no","OS10G0104300","Os10g0104300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XS11]","Helix-loop-helix DNA-binding domain containing protein. (Os10t0104300-00)",10,345785,347108,"GO:0046983;GO:0003677","protein dimerization activity;DNA binding","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS11T0220300-01",0.677809014739678,0.7936085313990441,-0.416626572860245,"OS11G0220300",null,7.14430862679876,8.80245234077597,3.6233644837414403,8.32353993246615,"no","OS11G0220300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R8Q9]","Similar to NB-ARC domain containing protein, expressed. (Os11t0220300-01)",11,6285765,6287989]
["OS03T0657100-01",0.678852609379157,0.7942216788600751,0.0128660392028347,"OS03G0657100",null,41.4198162595415,26.8740552742167,38.3755440552128,30.5301000979425,"no","OS03G0657100","RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q10FT0]","Armadillo-like helical domain containing protein. (Os03t0657100-01);Similar to predicted protein. (Os03t0657100-02)",3,25639109,25642187,"GO:0016567;GO:0004842;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0226300-01",0.680232383179143,0.79505192177615,0.0421749197369282,"OS03G0226300",null,18.3465705496708,31.9092381657241,23.4169216019272,28.3297215437171,"no","OS03G0226300","Os03g0226300 protein [Source:UniProtKB/TrEMBL;Acc:Q8H7R2]","Similar to Pto kinase interactor 1. (Os03t0226300-01)",3,6626961,6630244,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0018108;GO:0004713;GO:0016310;GO:0016301;GO:0005524;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;peptidyl-tyrosine phosphorylation;protein tyrosine kinase activity;phosphorylation;kinase activity;ATP binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS08T0487000-02",0.6816217109886731,0.79605911751246,0.136805687757648,"OS08G0487000",null,43.8048587434795,39.1287085615109,57.8436596124841,33.3391483519566,"no","OS08G0487000","Os08g0487000 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZCW5]","Hypothetical conserved gene. (Os08t0487000-01);Conserved hypothetical protein. (Os08t0487000-02)",8,24079623,24082991]
["OS01T0696500-01",0.683406975137077,0.7973211862522621,-0.11392286478841301,"OS01G0696500",null,116.194946814582,79.2584302826051,91.7162762742149,88.8967124302848,"no","OS01G0696500","Os01g0696500 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8L4]","Conserved hypothetical protein. (Os01t0696500-01)",1,28823442,28824184]
["OS07T0607200-01",0.6849323772392031,0.7983691575831571,0.19050416536449202,"OS07G0607200",null,7.1347774359830805,18.5279447413882,17.5626912014454,11.7226433974002,"no","OS07G0607200","Os07g0607200 protein [Source:UniProtKB/TrEMBL;Acc:Q69J35]","Protein of unknown function DUF751 family protein. (Os07t0607200-01)",7,24953956,24954811,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0144700-00",0.685372972520434,0.798608507110767,0.34802263868074,"OS10G0144700",null,6.11552351655692,3.08799079023137,6.82993546722877,4.88443474891674,"no","OS10G0144700","Os10g0144700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRF4]","Cytochrome P450 domain containing protein. (Os10t0144700-00)",10,2709163,2711992,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0181166-00",0.686290737976854,0.799159760135261,0.503961074988277,"OS01G0181166",null,10.3103723511623,6.01072377016423,17.7038227173571,5.44115264096971,"no","OS01G0181166","Os01g0181166 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYX3]","Hypothetical gene. (Os01t0181166-00)",1,4277958,4278517]
["OS07T0678300-01",0.687750302804037,0.80016155444668,-0.219588508774747,"OS07G0678300","CIPK29",1166.7249339813,872.777447701816,705.359365458571,1046.18639860585,"no","OS07G0678300","CBL-interacting protein kinase 29 [Source:UniProtKB/Swiss-Prot;Acc:Q7XIW5]","Similar to CBL-interacting protein kinase 29. (Os07t0678300-01)",7,28710749,28712470,"GO:0005622;GO:0035556;GO:0018107;GO:0018105;GO:0004674;GO:0016310;GO:0016301;GO:0007165;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","intracellular;intracellular signal transduction;peptidyl-threonine phosphorylation;peptidyl-serine phosphorylation;protein serine/threonine kinase activity;phosphorylation;kinase activity;signal transduction;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. [RESID:AA0038];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0199350-00",0.689041617600974,0.8010197291178021,-0.0426659812086427,"OS07G0199350",null,22.4235862273754,30.8799079023137,20.4898064016863,31.2603823930672,"no","OS07G0199350","Os07g0199350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KN32]","Similar to HAT family dimerisation domain containing protein. (Os07t0199350-00)",7,5365996,5366643]
["OS05T0194000-02",0.690367942819427,0.801798881966818,-0.0670388355489007,"OS05G0194000",null,27.4482393275413,24.5817137058088,26.6972868216575,22.9702627022762,"no","OS05G0194000","Os05g0194000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJ71]","Similar to CRS2-associated factor 2, chloroplastic precursor. (Os05t0194000-01);Similar to CRS2-associated factor 2, chloroplastic precursor. (Os05t0194000-02)",5,5763848,5767422]
["OS02T0288400-00",0.692139080990952,0.8031935265319411,-0.310869884990133,"OS02G0288400",null,6.11552351655692,7.20531184387319,5.8542304004818,4.88443474891674,"no","OS02G0288400","Os02g0288400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF42]","Similar to MRP-like ABC transporter. (Os02t0288400-00)",2,10880647,10886393,"GO:0000325;GO:0055085;GO:0042626;GO:0005774;GO:0016887;GO:0006810;GO:0016021;GO:0005524;GO:0000166;GO:0016020","plant-type vacuole;transmembrane transport;ATPase activity, coupled to transmembrane movement of substances;vacuolar membrane;ATPase activity;transport;integral component of membrane;ATP binding;nucleotide binding;membrane","A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0105850-01",0.69269125010877,0.803702835839402,0.8383806192423531,"OS12G0105850",null,5.99022063075605,2.52918742074189,3.17579608871263,12.0572632624188,"no","OS12G0105850","Os12g0105850 protein [Source:UniProtKB/TrEMBL;Acc:C7J9W4]","Hypothetical protein. (Os12t0105850-01)",12,306918,308652]
["OS01T0678500-02",0.694840255239904,0.805426443651292,-0.16149474100644,"OS01G0678500","TPC1",220.030054892811,339.450237526001,204.963448052457,295.266895362683,"no","OS01G0678500","Two pore calcium channel protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5QM84]","Voltage-gated Ca2+ channel  protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-01);Voltage-gated Ca2+ channel  protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-02)",1,27906660,27920949,"GO:0034220;GO:0005886;GO:0006952;GO:0006816;GO:0006811;GO:0005216;GO:0005509;GO:0006810;GO:0055085;GO:0034765;GO:0005244;GO:0016020;GO:0016021;GO:0005245;GO:0005261;GO:0005262;GO:0070588;GO:0086010;GO:0009845;GO:0010119;GO:0019722;GO:0080141;GO:0000325;GO:0005773;GO:0005774;GO:0005794","ion transmembrane transport;plasma membrane;defense response;calcium ion transport;ion transport;ion channel activity;calcium ion binding;transport;transmembrane transport;regulation of ion transmembrane transport;voltage-gated ion channel activity;membrane;integral component of membrane;voltage-gated calcium channel activity;cation channel activity;calcium channel activity;calcium ion transmembrane transport;membrane depolarization during action potential;seed germination;regulation of stomatal movement;calcium-mediated signaling;regulation of jasmonic acid biosynthetic process;plant-type vacuole;vacuole;vacuolar membrane;Golgi apparatus","A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). [GOC:cy, GOC:mtg_transport, GOC:pr, ISBN:0815340729];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. [GOC:mah];Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transmembrane transfer of a calcium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, GOC:tb, ISBN:0815340729];Enables the energy-independent passage of cations across a lipid bilayer down a concentration gradient. [GOC:def, GOC:dph, GOC:mtg_transport, GOC:pr, ISBN:0815340729];Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, GOC:pr, ISBN:0815340729];A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The process in which membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential. [GOC:BHF, GOC:mtg_cardiac_conduct_nov11];The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis. [PMID:8281041];Any process that modulates the frequency, rate or extent of stomatal movement. [GOC:sm];Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. [GOC:signaling];Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of jasmonic acid. [GOC:dhl];A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0815316208];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732]"]
["OS11T0655200-01",0.696922752846299,0.8072023635211211,-0.41600737381928804,"OS11G0655200",null,9.00483808747406,4.78390766701063,3.90282026698787,6.43178910856112,"no","OS11G0655200","Os11g0655200 protein [Source:UniProtKB/TrEMBL;Acc:C7J846]","NB-ARC domain containing protein. (Os11t0655200-01)",11,26212918,26216126,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS09T0566400-01",0.698783266011026,0.80859093069609,-1.33339735929515,"OS09G0566400",null,21.037858988605,169.96671405708,55.6334654574717,20.1633856938429,"no","OS09G0566400","Os09g0566400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQZ2]","Conserved hypothetical protein. (Os09t0566400-01);Conserved hypothetical protein. (Os09t0566400-02)",9,22594929,22597428]
["OS01T0273150-00",0.7006854052713071,0.8101108119512941,-0.306116488047877,"OS01G0273150",null,8.39154715125503,12.4379133641829,9.41179743499745,7.4354043177494304,"no","OS01G0273150","Os01g0273150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0Y9]","Hypothetical gene. (Os01t0273150-00)",1,9447054,9450883]
["OS03T0598002-00",0.7020006684789011,0.8108856152294931,-0.365587152071685,"OS03G0598002",null,7.1347774359830805,4.18372812179199,5.8542304004818,2.93066084935005,"no","OS03G0598002","Os03g0598002 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W0M2]","Hypothetical gene. (Os03t0598002-00)",3,22271544,22272752,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0843700-01",0.7024099060898441,0.81118984883224,0.232837191009435,"OS01G0843700",null,9.17328527483539,4.11732105364182,9.75705066746967,5.86132169870009,"no","OS01G0843700","Os01g0843700 protein [Source:UniProtKB/TrEMBL;Acc:A2ZZH8]","Conserved hypothetical protein. (Os01t0843700-01)",1,36232930,36233540,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0149100-00",0.705069882407746,0.813166560042579,0.43787485828196604,"OS03G0149100",null,5.09626959713077,5.14665131705228,4.10626770281327,9.76886949783349,"no","OS03G0149100","Adventitious rootless1 [Source:UniProtKB/TrEMBL;Acc:Q5UG13]","ASYMMETRIC LEAVES2 (AS2)/LATERAL ORGAN BOUNDARIES (LOB) domain transcription factor, Crown root formation (Os03t0149100-01)",3,2726696,2727559]
["OS07T0241800-01",0.705443087182488,0.813418731398406,0.00811663366174071,"OS07G0241800",null,25.4813479856539,17.4986144779778,17.8233894532821,25.3990606943671,"no","OS07G0241800","Os07g0241800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XI34]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os07t0241800-01)",7,7911954,7913687,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0008152;GO:0016020;GO:0016021;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;metabolic process;membrane;integral component of membrane;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0350200-01",0.706763125597449,0.8140939154446261,-0.141954270188521,"OS06G0350200",null,83.2793479043268,99.2823257560548,98.9275405212143,66.5264000950649,"no","OS06G0350200","Os06g0350200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WWN2]","Hypothetical gene. (Os06t0350200-01)",6,14193884,14195442]
["OS11T0582000-00",0.7089264947957421,0.8155758407874321,0.45093799917453503,"OS11G0582000",null,6.11552351655692,1.02933026341046,1.95141013349393,7.81509559826679,"no","OS11G0582000","NA","Hypothetical conserved gene. (Os11t0582000-00)","NA","NA","NA","NA","NA","NA"]
["OS12T0446900-01",0.710307852786171,0.816760463617731,-0.197213293897779,"OS12G0446900",null,72.3670282792569,97.7863750239933,60.4937141383119,87.9198254805014,"no","OS12G0446900","Bifunctional dihydrofolate reductase-thymidylate synthase [Source:UniProtKB/TrEMBL;Acc:B9GCZ3]","Similar to bifunctional dihydrofolate reductase-thymidylate synthase. (Os12t0446900-01)",12,15130136,15140357,"GO:0046654;GO:0006545;GO:0004146;GO:0006231;GO:0004799;GO:0009165;GO:0006730;GO:0003824;GO:0008152;GO:0032259;GO:0008168;GO:0055114;GO:0016491;GO:0016020;GO:0016021;GO:0016740","tetrahydrofolate biosynthetic process;glycine biosynthetic process;dihydrofolate reductase activity;dTMP biosynthetic process;thymidylate synthase activity;nucleotide biosynthetic process;one-carbon metabolic process;catalytic activity;metabolic process;methylation;methyltransferase activity;oxidation-reduction process;oxidoreductase activity;membrane;integral component of membrane;transferase activity","The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid. [GOC:go_curators];Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+. [EC:1.5.1.3];The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate). [ISBN:0198506732];Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = 7,8-dihydrofolate + thymidylate. [EC:2.1.1.45, RHEA:12107];The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). [GOC:go_curators];The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. [GOC:hjd, GOC:mah, GOC:pde];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0206800-01",0.710382474780133,0.816815527058922,0.330213278402856,"OS01G0206800",null,12.3430529583255,24.9301524392945,25.3683317354211,21.4915128952337,"no","OS01G0206800","Leucine-rich receptor-like protein kinase-like [Source:UniProtKB/TrEMBL;Acc:Q5QNM3]","Protein kinase, core domain containing protein. (Os01t0206800-01)",1,5814827,5819207,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0573800-01",0.7124077914386481,0.8183742985423971,0.0306313298787892,"OS06G0573800",null,15.2888087913923,13.3812934243359,17.5626912014454,11.7226433974002,"no","OS06G0573800","Os06g0573700 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z7K9]","Fanconi Anaemia group E protein, C-terminal domain containing protein. (Os06t0573800-01)",6,22254354,22255983]
["OS05T0480200-01",0.7144200098796031,0.819902823447589,0.398540463425241,"OS05G0480200",null,2.33058198663514,5.64954210381332,6.03208336552011,4.48710612889712,"no","OS05G0480200","Thioredoxin H5 [Source:UniProtKB/Swiss-Prot;Acc:Q75GM1]","Thioredoxin domain 2 containing protein. (Os05t0480200-01)",5,23600961,23605047,"GO:0016671;GO:0047134;GO:0015035;GO:0045454;GO:0004791;GO:0034599;GO:0005737;GO:0006662;GO:0005623;GO:0055114;GO:0098869","oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor;protein-disulfide reductase activity;protein disulfide oxidoreductase activity;cell redox homeostasis;thioredoxin-disulfide reductase activity;cellular response to oxidative stress;cytoplasm;glycerol ether metabolic process;cell;oxidation-reduction process;cellular oxidant detoxification","Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. [GOC:jl];Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. [EC:1.8.1.8, MetaCyc:1.6.4.4-RXN];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol. [GOC:ai, ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS12T0129650-01",0.71606403930185,0.821154137405229,0.0133292650131687,"OS12G0129650",null,20.1020219054872,12.8722760882435,14.4878351887819,18.7925287580051,"no","OS12G0129650","Os12g0129650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTI7]","Similar to cDNA, clone: J065154E06, full insert sequence. (Os12t0129650-01)",12,1434242,1446378,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0499450-00",0.717981144986606,0.8225501842921751,-1.11085165818372,"OS05G0499450",null,17.2552054609873,1.89670285173109,2.49857946885311,6.36914895113911,"no","OS05G0499450","Os05g0499450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WP90]","Hypothetical protein. (Os05t0499450-00)",5,24587489,24588452]
["OS04T0454900-01",0.718426184153497,0.8229579171272551,0.152159601267004,"OS04G0454900",null,8.15403135540923,10.2933026341046,12.6841658677106,7.81509559826679,"no","OS04G0454900","Os04g0454900 protein [Source:UniProtKB/TrEMBL;Acc:Q0JCR2]","Similar to Mitotic spindle checkpoint component mad3. (Os04t0454900-01)",4,22773497,22778458,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0017148;GO:0006952;GO:0030598;GO:0022857;GO:0055085;GO:0016787;GO:0016021;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;negative regulation of translation;defense response;rRNA N-glycosylase activity;transmembrane transporter activity;transmembrane transport;hydrolase activity;integral component of membrane;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. [GOC:isa_complete];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species. [EC:3.2.2.22, GOC:mah];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0323500-01",0.7202729289890231,0.824371713736144,-0.117228011161928,"OS01G0323500",null,11.2117931136877,21.6159355316196,14.6355760012045,15.6301911965336,"no","OS01G0323500","Os01g0323400 protein [Source:UniProtKB/TrEMBL;Acc:Q657G6]","Conserved hypothetical protein. (Os01t0323500-01)",1,12351672,12353063]
["OS03T0326300-02",0.721594652717218,0.825140651399327,-0.0334693235798609,"OS03G0326300",null,47.4500318567079,49.3228287240043,42.2530055020341,52.3006467222151,"no","OS03G0326300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10M20]","Zinc finger, RING-type domain containing protein. (Os03t0326300-01);Hypothetical conserved gene. (Os03t0326300-02);Hypothetical conserved gene. (Os03t0326300-03)",3,11902823,11907356]
["OS01T0254300-00",0.7237699279749481,0.826887249999649,-0.102161391086447,"OS01G0254300",null,6.53961867883564,6.17598158046274,9.75705066746967,2.08926288211241,"no","OS01G0254300","Putative pectinesterase/pectinesterase inhibitor 22 [Source:Projected from Arabidopsis thaliana (AT3G05620) UniProtKB/Swiss-Prot;Acc:Q9M9W7]","Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0254300-00)",1,8447731,8451489,"GO:0071944;GO:0046910;GO:0030599;GO:0045490;GO:0042545;GO:0045330;GO:0005618;GO:0043086;GO:0004857;GO:0016787","cell periphery;pectinesterase inhibitor activity;pectinesterase activity;pectin catabolic process;cell wall modification;aspartyl esterase activity;cell wall;negative regulation of catalytic activity;enzyme inhibitor activity;hydrolase activity","The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah];Stops, prevents or reduces the activity of any pectinesterase enzyme. [GOC:ai, PMID:10880981];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl];Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. [GOC:mah, UniProtKB-KW:KW-0063];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS10T0133800-00",0.7253651347916891,0.8280629370157541,-0.296365120109834,"OS10G0133800",null,5.17898517372092,10.4602493070935,7.85061659651522,4.88443474891674,"no","OS10G0133800","Os10g0133800 protein [Source:UniProtKB/TrEMBL;Acc:B9G7E3]","NB-ARC domain containing protein. (Os10t0133800-00)",10,2107756,2109186,"GO:0005886;GO:0007165;GO:0006952","plasma membrane;signal transduction;defense response","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]"]
["OS01T0140400-02",0.727566913278467,0.829787115623381,-0.0508114201281843,"OS01G0140400",null,900.634186597063,1039.18605147994,987.725653371434,884.963626595007,"no","OS01G0140400","Os01g0140400 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZDH7]","Similar to leucine-rich repeat protein-related. (Os01t0140400-01);Leucine-rich repeat, N-terminal domain containing protein. (Os01t0140400-02)",1,2131013,2137293,"GO:0016310;GO:0016301;GO:0016020;GO:0016021;GO:0005768;GO:0005773;GO:0005794;GO:0005802;GO:0005886;","phosphorylation;kinase activity;membrane;integral component of membrane;endosome;vacuole;Golgi apparatus;trans-Golgi network;plasma membrane;","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. [GOC:vw, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];"]
["OS08T0451700-01",0.7288027472266471,0.830556213706909,0.315533755188853,"OS08G0451700",null,6.82952673846266,5.80777883604012,10.319020703125,5.4077520699986,"no","OS08G0451700","Os08g0451700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZKR7]","Conserved hypothetical protein. (Os08t0451700-01);Conserved hypothetical protein. (Os08t0451700-02);Conserved hypothetical protein. (Os08t0451700-03)",8,22082652,22093757]
["OS03T0285133-00",0.7296475365320231,0.8313638970734081,-0.16112697423893302,"OS03G0285133",null,19.8937833338357,26.3635259551834,14.0287826023803,27.3403404363027,"no","OS03G0285133","Os03g0285133 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VW82]","Hypothetical conserved gene. (Os03t0285133-00)",3,9825338,9825583]
["OS04T0578800-02",0.7317773904504951,0.8331381715313411,-0.39963638707464305,"OS04G0578800",null,91.3537951874953,39.3975208753688,43.4098745009896,55.7060711887386,"no","OS04G0578800","OSJNBa0011J08.14 protein [Source:UniProtKB/TrEMBL;Acc:Q7XQ75]","Protein of unknown function DUF604 family protein. (Os04t0578800-01);Protein of unknown function DUF604 family protein. (Os04t0578800-02)",4,29194394,29197064,"GO:0016020;GO:0016021;GO:0042255;GO:0009507;GO:0032502;GO:0009658;GO:0019843;GO:0008380;GO:0003727","membrane;integral component of membrane;ribosome assembly;chloroplast;developmental process;chloroplast organization;rRNA binding;RNA splicing;single-stranded RNA binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The aggregation, arrangement and bonding together of the mature ribosome and of its subunits. [GOC:ma];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. [GOC:isa_complete];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid];Interacting selectively and non-covalently with ribosomal RNA. [GOC:jl];The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah];Interacting selectively and non-covalently with single-stranded RNA. [GOC:jl]"]
["OS01T0729900-03",0.734181156589859,0.8350740998745461,0.022787533690112,"OS01G0729900",null,150.74859230797,124.489858394997,139.891524689567,139.728864427959,"no","OS01G0729900","Os01g0729900 protein [Source:UniProtKB/TrEMBL;Acc:Q5JNF5]","Conserved hypothetical protein. (Os01t0729900-01);Conserved hypothetical protein. (Os01t0729900-02);Conserved hypothetical protein. (Os01t0729900-03);Similar to predicted protein. (Os01t0729900-04)",1,30427122,30431744]
["OS01T0361700-01",0.736328282557956,0.836760338058794,0.124313370501963,"OS01G0361700",null,8.15403135540923,6.17598158046274,8.7813456007227,6.83820864848344,"no","OS01G0361700","Os01g0361700 protein [Source:UniProtKB/TrEMBL;Acc:Q0JMU0]","Conserved hypothetical protein. (Os01t0361700-01)",1,14742684,14743148,"GO:0010287;GO:0033306;GO:0004144","plastoglobule;phytol metabolic process;diacylglycerol O-acyltransferase activity","A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379];The chemical reactions and pathways involving phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol. [CHEBI:17327, GOC:mah];Catalysis of the reaction: acyl-CoA + 1,2-diacylglycerol = CoA + triacylglycerol. [EC:2.3.1.20]"]
["OS02T0180400-00",0.737700279452144,0.8376651653096671,0.138592452431013,"OS02G0180400",null,5.09626959713077,14.4106236877464,14.6355760012045,6.83820864848344,"no","OS02G0180400","GCN5-related N-acetyltransferase-like [Source:UniProtKB/TrEMBL;Acc:Q6H820]","GCN5-related N-acetyltransferase (GNAT) domain domain containing protein. (Os02t0180400-00)",2,4481872,4483470,"GO:0016747;GO:0008080;GO:0016740;GO:0006473","transferase activity, transferring acyl groups other than amino-acyl groups;N-acetyltransferase activity;transferase activity;protein acetylation","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. [GOC:ai]"]
["OS09T0120033-02",0.738047838670085,0.837904112335046,-0.0625977961907869,"OS09G0120033",null,15.3415213920566,23.655122779271,17.6237737978885,19.7170092856054,"no","OS09G0120033","Os09g0120033 protein [Source:UniProtKB/TrEMBL;Acc:C7J789]","Hypothetical protein. (Os09t0120033-01);Conserved hypothetical protein. (Os09t0120033-02)",9,1535519,1538149]
["OS12T0293000-02",0.739747217503516,0.8390716869705981,-0.268719889389198,"OS12G0293000",null,6.69204547209584,11.5583070118985,9.22591619296464,5.92289349387012,"no","OS12G0293000","Os12g0293000 protein [Source:UniProtKB/TrEMBL;Acc:Q0INT7]","Hypothetical conserved gene. (Os12t0293000-01);Conserved hypothetical protein. (Os12t0293000-02)",12,11357939,11360914]
["OS02T0231700-00",0.740993270724133,0.8398125313337431,0.0218833579842489,"OS02G0231700",null,10.1353212671747,10.4120378209006,11.8749588247342,8.98644634113688,"no","OS02G0231700","Os02g0231700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETA1]","Protein kinase, catalytic domain domain containing protein. (Os02t0231700-00)",2,7434759,7438310,"GO:0016310;GO:0016301;GO:0009055;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;electron carrier activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0246400-00",0.7432434382991131,0.841510228705676,0.6080779804481741,"OS06G0246400",null,1.96486075653883,7.80357632096177,2.40814504883905,12.4811725979051,"no","OS06G0246400","Os06g0246400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WUZ5]","Glycosyltransferase AER61, uncharacterised domain containing protein. (Os06t0246400-00)",6,7601000,7601522,"GO:0016757","transferase activity, transferring glycosyl groups","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732]"]
["OS12T0595800-01",0.7435824647677971,0.8416572231836631,0.0662749396069333,"OS12G0595800",null,24.697772714154,20.9146587167085,25.1306853642861,22.6259771359709,"no","OS12G0595800","Os12g0595800 protein [Source:UniProtKB/TrEMBL;Acc:B7EKS1]","Similar to cDNA clone:J023098M23, full insert sequence. (Os12t0595800-01);Similar to Protein kinase domain containing protein, expressed. (Os12t0595800-02);Similar to cDNA clone:J023098M23, full insert sequence. (Os12t0595800-03);Protein kinase, core domain containing protein. (Os12t0595800-04)",12,25015035,25026459,"GO:0030247;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;;GO:0007166;GO:0004674;GO:0005886","polysaccharide binding;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;;cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];;A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS06T0211200-01",0.746260734805616,0.843562685552624,0.622435164026515,"OS06G0211200","BZIP46",25.955328977860802,18.7236937003386,42.4221722229217,26.3599100663316,"no","OS06G0211200","bZIP transcription factor 46 [Source:UniProtKB/Swiss-Prot;Acc:Q69TW5]","bZIP transcription factor, Positive regulator of ABA signaling, Drought tolerance (Os06t0211200-01);Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1). (Os06t0211200-02)",6,5677157,5682033,"GO:0009738;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","abscisic acid-activated signaling pathway;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0305150-00",0.746489929383049,0.843632474754417,0.33782574303455803,"OS05G0305150",null,14.5958412623344,6.19286540002412,17.1076639129791,9.16615202751576,"no","OS05G0305150","Os05g0305150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WKG8]","Hypothetical protein. (Os05t0305150-00)",5,13773469,13781605]
["OS01T0136450-00",0.748739833101112,0.8455333707393631,-0.15311316640286202,"OS01G0136450",null,9.71315360301542,9.27340962768473,6.09623393534168,10.9785298429544,"no","OS01G0136450","Os01g0136450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UY86]","Conserved hypothetical protein. (Os01t0136450-00)",1,1961587,1962403,"GO:0030247;GO:0016310;GO:0016301;GO:0004674;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","polysaccharide binding;phosphorylation;kinase activity;protein serine/threonine kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0828300-01",0.750553612498655,0.8468466640467881,-0.132911215779071,"OS03G0828300",null,5.38936567129901,10.4820481963886,10.364308020257,4.11025141406305,"no","OS03G0828300","Os03g0828300 protein [Source:UniProtKB/TrEMBL;Acc:C7IZY9]","Similar to (1-4)-beta-mannan endohydrolase-like protein. (Os03t0828300-01)",3,34792025,34793842]
["OS10T0531300-01",0.752449993145696,0.8483284324361531,0.216835399697923,"OS10G0531300",null,7.61933657906307,3.9973802273176,4.71069435593666,8.79003905443625,"no","OS10G0531300","Os10g0531300 protein [Source:UniProtKB/TrEMBL;Acc:Q0IW58]","Similar to Glutathione transferase (EC 2.5.1.18). (Os10t0531300-01)",10,20645752,20646716]
["OS02T0462401-00",0.755168195680827,0.850665493671621,0.0304736710296868,"OS02G0462401",null,7.1347774359830805,7.20531184387319,5.8542304004818,8.79198254805014,"no","OS02G0462401","Os02g0462401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VIS5]","Conserved hypothetical protein. (Os02t0462401-00)",2,15505302,15507245,"GO:0004518;GO:0090305","nuclease activity;nucleic acid phosphodiester bond hydrolysis","Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS01T0882100-00",0.7556414955766071,0.850953150492314,0.25659316290182904,"OS01G0882100",null,6.11552351655692,2.05866052682091,2.9271152002409,6.83820864848344,"no","OS01G0882100","Os01g0882100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KE67]","Hypothetical conserved gene. (Os01t0882100-00)",1,38290773,38290970]
["OS01T0201800-00",0.7572193546317251,0.8520391029282721,0.0160223794308939,"OS01G0201800",null,13.4574361337275,10.4065719852544,7.77887915987216,16.3516366225239,"no","OS01G0201800","Os01g0201800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UZD1]","Hypothetical conserved gene. (Os01t0201800-00)",1,5579959,5585078]
["OS01T0134900-01",0.758796484204705,0.8530910831802081,-0.12828778988084802,"OS01G0134900",null,767.215480150713,838.616478806017,623.379866098052,845.822516877699,"no","OS01G0134900","Os01g0134900 protein [Source:UniProtKB/TrEMBL;Acc:B9EZD5]","(1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC 3.2.1.8) (Fragment). (Os01t0134900-01)",1,1912561,1915094,"GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0016020;GO:0016021","hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;membrane;integral component of membrane","Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0599700-01",0.7603756193785121,0.8543702529311921,0.0569394907495796,"OS12G0599700",null,6.11552351655692,5.14665131705228,5.8542304004818,5.86132169870009,"no","OS12G0599700","Os12g0599700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBZ0]","Similar to Pectinesterase inhibitor domain containing protein, expressed. (Os12t0599700-01)",12,25233296,25234195,"GO:0043086;GO:0004857","negative regulation of catalytic activity;enzyme inhibitor activity","Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc]"]
["OS01T0785300-02",0.762723064316106,0.8560261410870721,0.15290625884956502,"OS01G0785300",null,6.11552351655692,6.17598158046274,8.7813456007227,4.88443474891674,"no","OS01G0785300","Os01g0785300 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZAM7]","Hypothetical protein. (Os01t0785300-02)",1,33302721,33303613,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0781100-00",0.7647989333383911,0.857614596641124,-0.0690677869947974,"OS03G0781100",null,12.2310470331138,10.2933026341046,16.5869861346984,4.88443474891674,"no","OS03G0781100","Pentatricopeptide repeat-containing protein At4g21300 [Source:Projected from Arabidopsis thaliana (AT4G21300) UniProtKB/Swiss-Prot;Acc:Q9STE1]","Pentatricopeptide repeat domain containing protein. (Os03t0781100-00)",3,32389024,32391628,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]"]
["OS04T0549600-02",0.7668419794304481,0.859226543591544,-0.0178304139984562,"OS04G0549600","DJA6",8176.04376482822,7224.49154795167,8035.70362916409,7175.66627437376,"no","OS04G0549600","Chaperone protein dnaJ A6 [Source:UniProtKB/Swiss-Prot;Acc:Q0JB88]","Chaperone DnaJ protein, Negative regulation of rice innate immunity, Basal resistance to Magnaporthe oryzae (Os04t0549600-01);Similar to OSIGBa0134H18.3 protein. (Os04t0549600-02)",4,27505498,27509994,"GO:0031072;GO:0006457;GO:0051082;GO:0046872;GO:0009408;GO:0016032;GO:0006952;GO:0005737;GO:0005634;GO:0005524","heat shock protein binding;protein folding;unfolded protein binding;metal ion binding;response to heat;viral process;defense response;cytoplasm;nucleus;ATP binding","Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. [GOC:mah, GOC:vw];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle. [GOC:bf, GOC:jl, GOC:mah];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS04T0465700-01",0.768116834661775,0.8601827407296591,0.09003501201590859,"OS04G0465700",null,194.921094000505,137.441035518154,175.122520770145,178.642404899105,"no","OS04G0465700","RNA-dependent RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WB44]","RNA-dependent RNA polymerase, eukaryotic-type domain containing protein. (Os04t0465700-01)",4,23287964,23290500,"GO:0001172;GO:0016779;GO:0003968;GO:0003723;GO:0031047;GO:0016740","transcription, RNA-templated;nucleotidyltransferase activity;RNA-directed 5'-3' RNA polymerase activity;RNA binding;gene silencing by RNA;transferase activity","The cellular synthesis of RNA on a template of RNA. [GOC:txnOH];Catalysis of the transfer of a nucleotidyl group to a reactant. [ISBN:0198506732];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. [EC:2.7.7.48, GOC:mah, GOC:pf];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0576000-01",0.769421454908635,0.861201798445509,0.931199916348978,"OS07G0576000",null,15.7638847707859,15.9197265315601,15.0903537865527,45.3258987293546,"no","OS07G0576000","Os07g0576000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7U9]","UbiA prenyltransferase family protein. (Os07t0576000-01);Homogentisic acid geranylgeranyl transferase. (Os07t0576000-02);Non-protein coding transcript. (Os07t0576000-03)",7,23302454,23309676,"GO:0016765;GO:0016021;GO:0016020;GO:0010355;GO:0010356;GO:0010357;GO:0010236;GO:0016117;GO:0009536;GO:0009941;GO:0010189;GO:0009579;GO:0009535;GO:0009507;GO:0016740","transferase activity, transferring alkyl or aryl (other than methyl) groups;integral component of membrane;membrane;homogentisate farnesyltransferase activity;homogentisate geranylgeranyltransferase activity;homogentisate solanesyltransferase activity;plastoquinone biosynthetic process;carotenoid biosynthetic process;plastid;chloroplast envelope;vitamin E biosynthetic process;thylakoid;chloroplast thylakoid membrane;chloroplast;transferase activity","Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the reaction: homogentisic acid + farnesyl diphosphate = 2-methyl-6-farnesylplastoquinol. [PMID:16989822];Catalysis of the reaction: homogentisic acid + geranylgeranyl diphosphate = 2-methyl-6-geranylgeranylplastoquinol. [PMID:16989822];Catalysis of the reaction: homogentisic acid + all-trans-nonaprenyl diphosphate + 3 H+ = 2-methyl-6-solanyl-1,4-benzoquinonone + CO2 + diphosphate. 2-methyl-6-solanyl-1,4-benzoquinonone is also known as 2-methyl-6-solanesylplastoquinol and all-trans-nonaprenyl diphosphate as solanesyl diphosphate. [PMID:16989822];The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast. [GOC:sm];The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0783700-01",0.7713459214288311,0.8626921181496381,0.34870487876433304,"OS02G0783700",null,11.431363353232,12.1944922434497,10.1589543232436,19.9266107790664,"no","OS02G0783700","Os02g0783700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQK9]","Similar to Lysine ketoglutarate reductase/saccharopine dehydrogenase. (Os02t0783700-01)",2,33260120,33264235,"GO:0005737;GO:0016491;GO:0055114;GO:0019878;GO:0016020;GO:0016021;GO:0004753;GO:0006091","cytoplasm;oxidoreductase activity;oxidation-reduction process;lysine biosynthetic process via aminoadipic acid;membrane;integral component of membrane;saccharopine dehydrogenase activity;generation of precursor metabolites and energy","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways resulting in the formation of lysine by the aminoadipic pathway. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the cleavage of N6-(L-1,3-dicarboxypropyl)-L-lysine to release an amino acid (lysine or glutamate), with the concomitant reduction of an electron acceptor. [GOC:mah];The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. [GOC:jl]"]
["OS02T0160900-01",0.773900315315675,0.8647576049127531,-0.0412517217562356,"OS02G0160900",null,7.53123834950055,8.23464210728365,8.48325388882534,6.83820864848344,"no","OS02G0160900","Os02g0160900 protein [Source:UniProtKB/TrEMBL;Acc:C7IZA3]","Protein of unknown function wound-induced domain containing protein. (Os02t0160900-01)",2,3279594,3280500]
["OS09T0327200-00",0.776387246158958,0.8667440035315711,0.101187490977567,"OS09G0327200",null,9.17328527483539,7.20531184387319,12.6841658677106,4.88443474891674,"no","OS09G0327200","Pentatricopeptide repeat-containing protein At4g02750 [Source:Projected from Arabidopsis thaliana (AT4G02750) UniProtKB/Swiss-Prot;Acc:Q9SY02]","Pentatricopeptide repeat domain containing protein. (Os09t0327200-00)",9,9647717,9650347,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS12T0542601-01",0.7765142605269131,0.8668541248033561,0.26763466792322804,"OS12G0542601",null,24.0190037907445,17.7349105633813,30.1299030765806,20.1348159187629,"no","OS12G0542601","Os12g0542601 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBE1]","Conserved hypothetical protein. (Os12t0542601-01)",12,21783684,21786014,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0122400-00",0.7795669624483771,0.869413537073481,-0.0685449940065546,"OS05G0122400",null,5.09626959713077,4.11732105364182,4.87852533373483,3.9075477991334,"no","OS05G0122400","Os05g0122400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WHC1]","Hypothetical conserved gene. (Os05t0122400-00)",5,1222843,1230989,"GO:0061630;GO:0005737;GO:0016567;GO:0004842;GO:0016874;GO:0016740","ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;ubiquitin-protein transferase activity;ligase activity;transferase activity","Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0267800-00",0.780971415140537,0.8703669174645681,-0.236576017940713,"OS01G0267800",null,6.11552351655692,3.08799079023137,2.9271152002409,4.88443474891674,"no","OS01G0267800","Os01g0267800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JNS7]","Serine/threonine protein kinase domain containing protein. (Os01t0267800-00)",1,9192164,9193439,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0018108;GO:0004713;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;peptidyl-tyrosine phosphorylation;protein tyrosine kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0117000-00",0.783272917069555,0.872136526925509,0.433335114413372,"OS01G0117000",null,22.3721498402447,8.92316827874796,27.8146466212463,14.4450366877373,"no","OS01G0117000","Os01g0117000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UX91]","Similar to Receptor-like kinase ARK1AS. (Os01t0117000-00)",1,957907,960626,"GO:0030247;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0550300-01",0.78674327933994,0.8751703216044731,-0.0964656092852733,"OS05G0550300",null,8016.4320762867,6923.27487072378,6419.16363412829,7554.26678267464,"no","OS05G0550300","Os05g0550300 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4H1]","Similar to Lipid transfer protein (Fragment). (Os05t0550300-01)",5,27330717,27331341,"GO:0006869","lipid transport","The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [ISBN:0198506732]"]
["OS02T0816300-02",0.788862439941006,0.8768901315291111,-0.38909577609077706,"OS02G0816300",null,51.8312966941474,67.3721597230196,26.032092587691,64.9926267619641,"no","OS02G0816300","Os02g0816300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DWG3]","Armadillo-type fold domain containing protein. (Os02t0816300-01);Hypothetical conserved gene. (Os02t0816300-02);Hypothetical conserved gene. (Os02t0816300-03)",2,34982175,34989869]
["OS07T0608700-01",0.7894324268043741,0.877364114358939,0.168376396947787,"OS07G0608700",null,41.8932318275245,53.8079835122585,39.1076260336208,68.4407356650826,"no","OS07G0608700","Os07g0608700 protein [Source:UniProtKB/TrEMBL;Acc:Q6YTY0]","Similar to Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG). (Os07t0608700-01);Similar to small nuclear ribonucleoprotein G. (Os07t0608700-02)",7,25036622,25039078,"GO:0071013;GO:0005685;GO:0071011;GO:0000387;GO:0000398;GO:0003723;GO:0005681;GO:0030529;GO:0097526;GO:0034719;GO:0005687;GO:0005682;GO:0071004;GO:0019013;GO:0005686;GO:0005689;GO:0016020;GO:0016021;GO:0043186","catalytic step 2 spliceosome;U1 snRNP;precatalytic spliceosome;spliceosomal snRNP assembly;mRNA splicing, via spliceosome;RNA binding;spliceosomal complex;intracellular ribonucleoprotein complex;spliceosomal tri-snRNP complex;SMN-Sm protein complex;U4 snRNP;U5 snRNP;U2-type prespliceosome;viral nucleocapsid;U2 snRNP;U12-type spliceosomal complex;membrane;integral component of membrane;P granule","A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];A ribonucleoprotein complex that contains small nuclear RNA U1. [GOC:krc, GOC:mah];A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, PMID:18322460, PMID:19239890];The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. [GOC:krc, GOC:mah, ISBN:0879695897];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. [GOC:editors, GOC:mah, ISBN:0198547684, PMID:19239890];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];A spliceosomal snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. [GOC:pr, ISBN:0879695897, PMID:9452384];A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm. [GOC:vw, PMID:11522829, PMID:17401408];A ribonucleoprotein complex that contains small nuclear RNA U4. [GOC:krc, GOC:mah];A ribonucleoprotein complex that contains small nuclear RNA U5. [GOC:krc, GOC:mah];A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. [GOC:ab, GOC:krc, GOC:mah, PMID:17332742, PMID:19239890];The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. [ISBN:0781702534];A ribonucleoprotein complex that contains small nuclear RNA U2. [GOC:krc, GOC:mah];Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site. [GOC:krc, GOC:mah, PMID:11574683, PMID:11971955];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A small cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes. [GOC:dph, GOC:kmv, PMID:11262230]"]
["OS06T0474900-01",0.7921695652263221,0.87973409024734,0.0641084734895608,"OS06G0474900",null,10.3653004678039,4.71821576740608,4.5307506271194296,11.2381410042919,"no","OS06G0474900","Os06g0474900 protein [Source:UniProtKB/TrEMBL;Acc:Q69Y37]","Conserved hypothetical protein. (Os06t0474900-01);Conserved hypothetical protein. (Os06t0474900-02)",6,15923035,15933069]
["OS03T0647600-01",0.7948216376881121,0.881974019345774,-0.0956678247905097,"OS03G0647600",null,237.486163226294,201.748731628449,178.554027214695,232.499094048437,"no","OS03G0647600","CCAAT-binding transcription factor subunit B family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q60DJ8]","Similar to Nf-Y-A subunit. (Os03t0647600-01)",3,25069214,25074703,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS11T0656100-00",0.7974733393127961,0.8840495450901511,0.518388469556435,"OS11G0656100",null,18.5092572432031,0,22.2842547573175,4.22756082262543,"no","OS11G0656100","Os11g0656100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y540]","Hypothetical gene. (Os11t0656100-00)",11,26276743,26279626]
["OS06T0715200-01",0.7999441744783471,0.8861134265857821,0.23307485278914,"OS06G0715200",null,6.11552351655692,11.322632897515,15.6112810679515,4.88443474891674,"no","OS06G0715200","Os06g0715200 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9P9]","Conserved hypothetical protein. (Os06t0715200-01)",6,30362750,30363592,"GO:0016020;GO:0016021;GO:0009507;GO:0009535","membrane;integral component of membrane;chloroplast;chloroplast thylakoid membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]"]
["OS04T0249500-00",0.803377016931693,0.8891185778459,0.330139119889365,"OS04G0249500",null,28.9418284484415,45.8443169402859,50.4254694828713,43.5907811021913,"no","OS04G0249500","Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7V7]","Similar to H0211A12.6 protein. (Os04t0249500-00)",4,9661934,9667132,"GO:0016157;GO:0005985;GO:0005737;GO:0016757;GO:0016020;GO:0016740","sucrose synthase activity;sucrose metabolic process;cytoplasm;transferase activity, transferring glycosyl groups;membrane;transferase activity","Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose. [EC:2.4.1.13];The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0234750-00",0.803838041539299,0.8893948446423311,-0.0715724540644876,"OS02G0234750",null,7.17348744361909,3.21224485259999,5.81027948380256,4.07278589749361,"no","OS02G0234750","Os02g0234750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VH35]","Hypothetical gene. (Os02t0234750-00)",2,7627889,7628252]
["OS06T0107800-01",0.8085229793585721,0.8939309544878621,-0.0247514217005607,"OS06G0107800",null,333.296031652352,408.644114573951,342.472478428185,386.847232114206,"no","OS06G0107800","Os06g0107800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WRZ6]","Similar to RAV-like protein. (Os06t0107800-01);B3 DNA-binding domain containing protein, Insect resistance (Os06t0107800-02)",6,484346,485308,"GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0016020;GO:0016021","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;membrane;integral component of membrane","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0671301-00",0.81198384958791,0.8969783625342521,0.204421047529928,"OS07G0671301",null,30.2761059115818,13.8979770559298,20.1854170885916,30.7130156274904,"no","OS07G0671301","Os07g0671301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XA77]","Hypothetical gene. (Os07t0671301-00)",7,28382452,28383736,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0346700-01",0.8152922228169641,0.8999772594401421,-0.651831812667923,"OS03G0346700",null,30.4889868071824,15.3952004614433,14.5931540417807,14.6108309011075,"no","OS03G0346700","JmjC domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10LJ3]","Similar to JmjC domain containing protein, expressed. (Os03t0346700-01);Similar to JmjC domain containing protein, expressed. (Os03t0346700-02)",3,12945591,12952532,"GO:0033169;GO:0031490;GO:0032454;GO:0000976;GO:0006355;GO:0000785;GO:0005634;GO:0016567;GO:0042393;GO:0061630;GO:0010628;GO:0051573;GO:2000616","histone H3-K9 demethylation;chromatin DNA binding;histone demethylase activity (H3-K9 specific);transcription regulatory region sequence-specific DNA binding;regulation of transcription, DNA-templated;chromatin;nucleus;protein ubiquitination;histone binding;ubiquitin protein ligase activity;positive regulation of gene expression;negative regulation of histone H3-K9 methylation;negative regulation of histone H3-K9 acetylation","The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone. [GOC:mah];Interacting selectively and non-covalently with DNA that is assembled into chromatin. [GOC:mah];Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein. [PMID:16362057];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. [GOC:elh, PMID:20404130];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai];Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 acetylation. [GOC:BHF]"]
["OS02T0815700-01",0.820526382278138,0.904910010878304,0.18145189027831501,"OS02G0815700",null,156.643627039806,140.232928546954,198.37317291192699,138.292133500551,"no","OS02G0815700","Os02g0815700 protein [Source:UniProtKB/TrEMBL;Acc:C7IY31]","Similar to D1 protease (Fragment). (Os02t0815700-01)",2,34937314,34941399,"GO:0008236;GO:0006508","serine-type peptidase activity;proteolysis","Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS06T0698748-02",0.8217531466422481,0.9060993985929681,0.163736243277942,"OS06G0698748",null,828.682779948803,889.19193816697,1117.58983120663,806.746630665843,"no","OS06G0698748","Os06g0698748 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z4U8]","Similar to cDNA clone:J023083M02, full insert sequence. (Os06t0698748-01);Similar to MTD1. (Os06t0698748-02)",6,29342111,29343842]
["OS04T0456100-01",0.8240763233427161,0.9079728742748261,0.224773282003133,"OS04G0456100",null,7.1347774359830805,2.05866052682091,1.95141013349393,8.79198254805014,"no","OS04G0456100","Os04g0456100 protein [Source:UniProtKB/TrEMBL;Acc:A3AUF7]","Conserved hypothetical protein. (Os04t0456100-01)",4,22814406,22815161]
["OS08T0223766-00",0.8278560777106451,0.911337054517483,0.104949201905909,"OS08G0223766",null,52.1068627348293,29.8505776389032,45.9527127746428,42.18895103195,"no","OS08G0223766","Os08g0223766 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDE1]","Similar to H0702G05.10 protein. (Os08t0223766-00)",8,7495162,7500893,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS03T0582200-01",0.8309015386089751,0.9139767347464051,0.0173044926641956,"OS03G0582200","SCAMP4",37.1612269761767,106.905149131543,50.4436318127469,95.3611620669162,"no","OS03G0582200","Secretory carrier-associated membrane protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q75IC7]","SCAMP family protein. (Os03t0582200-01);SCAMP family protein. (Os03t0582200-02)",3,21416155,21420237,"GO:0030658;GO:0031410;GO:0015031;GO:0005886;GO:0006810;GO:0016021;GO:0016020","transport vesicle membrane;cytoplasmic vesicle;protein transport;plasma membrane;transport;integral component of membrane;membrane","The lipid bilayer surrounding a transport vesicle. [GOC:mah];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0267000-00",0.8362045637270731,0.918883639570893,0.257577490065992,"OS08G0267000",null,2.63708160567666,6.68561639813583,1.81436141342675,9.33064099801062,"no","OS08G0267000","Os08g0267000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDQ0]","F-box domain, Skp2-like domain containing protein. (Os08t0267000-00)",8,10198285,10201713]
["OS10T0542266-00",0.840724007600792,0.923152669645608,-0.049143564912969596,"OS10G0542266",null,30.7256166194282,24.074114390734,15.6893225439667,37.2751607244766,"no","OS10G0542266","Os10g0542266 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XX65]","Hypothetical gene. (Os10t0542266-00)",10,21169727,21172263]
["OS01T0977600-03",0.84527790176454,0.927453059964454,0.057787828413397004,"OS01G0977600",null,1064.07791904315,1128.14025614784,1235.44076949482,1046.37009592797,"no","OS01G0977600","Os01g0977600 protein [Source:UniProtKB/TrEMBL;Acc:Q5JNB3]","Hypothetical conserved gene. (Os01t0977600-01);Armadillo-type fold domain containing protein. (Os01t0977600-02);Hypothetical conserved gene. (Os01t0977600-03)",1,43202561,43215251,"GO:0046872;GO:0008270;","metal ion binding;zinc ion binding;","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];"]
["OS10T0561400-03",0.8461077809166211,0.9281969451549221,0.016459402719147198,"OS10G0561400","MYBS3",208.767236198079,268.763195848152,218.297472467448,264.712199636716,"no","OS10G0561400","Transcription factor MYBS3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XC57]","Similar to Transcription factor MYBS3. (Os10t0561400-01);Similar to Transcription factor MYBS3. (Os10t0561400-02);Similar to Myb transcription factor. (Os10t0561400-03)",10,22128463,22136769,"GO:0005634;GO:0006355;GO:0006351;GO:0003677;GO:0009739;GO:0009744;GO:0045892;GO:0009723;GO:0046872;GO:0003676;GO:0008270;GO:0003700","nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding;response to gibberellin;response to sucrose;negative regulation of transcription, DNA-templated;response to ethylene;metal ion binding;nucleic acid binding;zinc ion binding;transcription factor activity, sequence-specific DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl];Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH]"]
["OS01T0613300-01",0.851152302743251,0.932893458418361,0.053327335632824296,"OS01G0613300",null,248.476827242552,195.253314028941,211.595616622689,248.843336346131,"no","OS01G0613300","Os01g0613300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JLA3]","Conserved hypothetical protein CHP02058 domain containing protein. (Os01t0613300-01)",1,24341214,24343585,"GO:0005773;GO:0009507","vacuole;chloroplast","A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS05T0581700-01",0.856186581480292,0.937671163113807,-0.068200892869341,"OS05G0581700",null,16.3080627108185,13.3812934243359,8.78076226061517,19.537738995667,"no","OS05G0581700","Os05g0581700 protein [Source:UniProtKB/TrEMBL;Acc:Q6L5E1]","Similar to Tie-dyed 1. (Os05t0581700-01)",5,28933310,28934607,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0267500-01",0.86365447599296,0.9450367662525311,0.060488505207096796,"OS09G0267500",null,354.700363960302,414.820096154414,438.091574969388,364.378832269189,"no","OS09G0267500","Protein NEDD1 [Source:Projected from Arabidopsis thaliana (AT5G05970) UniProtKB/Swiss-Prot;Acc:B3H5K9]","WD-40 repeat containing protein. (Os09t0267500-01);Similar to predicted protein. (Os09t0267500-02)",9,5094691,5102635,"GO:0007034;GO:0005622;GO:0000919;GO:0009553;GO:0009555;GO:0032467;GO:0060236;GO:2000694;GO:0005828","vacuolar transport;intracellular;cell plate assembly;embryo sac development;pollen development;positive regulation of cytokinesis;regulation of mitotic spindle organization;regulation of phragmoplast microtubule organization;kinetochore microtubule","The directed movement of substances into, out of or within a vacuole. [GOC:ai];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process of assembly, maturation, and growth of the cell plate to the cell periphery in cells that divide by cell plate formation; often involves deposition of cell wall material in and around the phragmoplast. [GOC:clt];The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells. [GOC:mah];Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. [GOC:ascb_2009, GOC:dph, GOC:tb];Any process that modulates the frequency, rate or extent of phragmoplast microtubule organization. [GOC:obol];Any of the spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic or meiotic chromosome segregation. [ISBN:0815316194]"]
["OS12T0101800-01",0.8710066800258671,0.952365474488236,-0.152740234151192,"OS12G0101800",null,16.6255398493848,29.9647764083747,30.4230675923151,11.4867978479918,"no","OS12G0101800","Os12g0101800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTF2]","Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-01);Similar to Nonphototrophic hypocotyl 1a. (Os12t0101800-02)",12,75290,89955,"GO:0023014;GO:0000160;GO:0000155;GO:0005622;GO:0006468;GO:0005524;GO:0004672","signal transduction by protein phosphorylation;phosphorelay signal transduction system;phosphorelay sensor kinase activity;intracellular;protein phosphorylation;ATP binding;protein kinase activity","A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0720600-03",0.8728466122796461,0.954172380791747,0.193547693057314,"OS01G0720600",null,139.118036465415,133.315740658202,254.465008590856,57.0827369155421,"no","OS01G0720600","Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:Q5JMA1]","Similar to Starch synthase IV. (Os01t0720600-01);Starch synthase, Starch biosynthesis (Os01t0720600-02);Similar to starch synthase IV. (Os01t0720600-03);Starch synthase, Starch biosynthesis (Os01t0720600-04)",1,30032428,30041425,"GO:0009501;GO:0019252;GO:0004373;GO:0009507;GO:0016757;GO:0009011","amyloplast;starch biosynthetic process;glycogen (starch) synthase activity;chloroplast;transferase activity, transferring glycosyl groups;starch synthase activity","A plastid whose main function is to synthesize and store starch. [ISBN:0140514031];The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.11];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.21]"]
["OS11T0470600-01",0.8805938494313371,0.9618155043552921,-0.19516984651631303,"OS11G0470600",null,214.087154945164,163.95423929979,130.301498414891,199.906339925908,"no","OS11G0470600","Os11g0470600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2B7]","Conserved hypothetical protein. (Os11t0470600-01)",11,16163244,16164242,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0304600-01",0.8862088030002361,0.96722221088355,0.0833101090933567,"OS06G0304600",null,803.851664480003,988.06940523824,925.00060603994,973.44307428746,"no","OS06G0304600","Os06g0304600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z4E5]","Peptidase aspartic, catalytic domain containing protein. (Os06t0304600-01);Similar to Aspartic proteinase nepenthesin-2. (Os06t0304600-02)",6,11486965,11494270,"GO:0030163;GO:0006508;GO:0004190;GO:0003677;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;DNA binding;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0694400-01",0.895471681351199,0.976459804719888,0.224773282003135,"OS06G0694400",null,48.3442677989887,13.9491997765624,13.2224859045365,59.5732610583398,"no","OS06G0694400","Os06g0694400 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z8I6]","Conserved hypothetical protein. (Os06t0694400-01);Conserved hypothetical protein. (Os06t0694400-02)",6,28988077,28990325]
["OS07T0695100-01",0.90508996260746,0.98606812885865,0.0459475622275772,"OS07G0695100","PRR37",1181.31529261491,1253.72426083394,1357.20574784503,1156.63414854349,"no","OS07G0695100","Two-component response regulator-like PRR37 [Source:UniProtKB/Swiss-Prot;Acc:Q0D3B6]","Pseudo response regulator, Heading date, long-day repression (Os07t0695100-01);Similar to Two-component response regulator-like PRR37. (Os07t0695100-02)",7,29616705,29629215,"GO:0000160;GO:0005622;GO:0048511;GO:0010017;GO:0009585;GO:0048579;GO:0009908;GO:0005634;GO:0006355;GO:0006351","phosphorelay signal transduction system;intracellular;rhythmic process;red or far-red light signaling pathway;red, far-red light phototransduction;negative regulation of long-day photoperiodism, flowering;flower development;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. [GOC:jid];The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:lr, GOC:mtg_far_red, GOC:sm];The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. [GOC:mah];Any process that stops, prevents or reduces long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:0582015952, ISBN:0697037754, ISBN:0709408862];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0104000-01",0.9085541009102571,0.989454084658522,-0.0990877883313584,"OS01G0104000",null,275.825140490928,59.3886940801935,105.272543088177,207.690847033977,"no","OS01G0104000","Os01g0104000 protein [Source:UniProtKB/TrEMBL;Acc:Q658C8]","C-type lectin domain containing protein. (Os01t0104000-01);Similar to predicted protein. (Os01t0104000-02)",1,206131,209606,"GO:0004674;GO:0005886;GO:0018108;GO:0004713;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein serine/threonine kinase activity;plasma membrane;peptidyl-tyrosine phosphorylation;protein tyrosine kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039];Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. [EC:2.7.10];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0929100-01",0.9147276036383121,0.9956804099457641,-0.24134715203553403,"OS01G0929100",null,20.3180304289613,77.3518036230866,46.4559194435783,36.1683662043077,"no","OS01G0929100","Photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G43750) UniProtKB/Swiss-Prot;Acc:Q9FG89]","Conserved hypothetical protein. (Os01t0929100-01);Similar to predicted protein. (Os01t0929100-02);Similar to predicted protein. (Os01t0929100-03)",1,40785129,40786742,"GO:0009507;GO:0006979;GO:0016020;GO:0016021;GO:0009535","chloroplast;response to oxidative stress;membrane;integral component of membrane;chloroplast thylakoid membrane","A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]"]
["OS01T0102900-01",1,1,0.0392276160543226,"OS01G0102900","LIR1",150.849580075071,150.282218457927,199.043833616381,110.388225325518,"no","OS01G0102900","Light-regulated protein [Source:UniProtKB/Swiss-Prot;Acc:Q03200]","Light-regulated protein, Regulation of light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE (LFNR) to the thylakoid membrane (Os01t0102900-01)",1,169390,170316]
["OS01T0149600-00",1,1,-0.14157467197593102,"OS01G0149600",null,253.260471378798,175.116649420376,198.884064818672,189.452285461848,"no","OS01G0149600","Os01g0149600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYK9]","Histon H2B (Os01t0149600-01)",1,2686486,2687266,"GO:0000786;GO:0046982;GO:0003677","nucleosome;protein heterodimerization activity;DNA binding","A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0221100-02",1,1,0.0949180563554592,"OS01G0221100","GH3.3",8.14982652663513,0,0,8.7040533990665,"no","OS01G0221100","Jasmonic acid-amido synthetase JAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5NAZ7]","GH3 auxin-responsive promoter family protein. (Os01t0221100-01);GH3 auxin-responsive promoter family protein. (Os01t0221100-02)",1,6626040,6630462,"GO:0009416;GO:0009733;GO:0016874","response to light stimulus;response to auxin;ligase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah]"]
["OS01T0279100-01",1,1,-0.157410212921196,"OS01G0279100",null,194.338384138609,384.541193644888,302.496003823708,216.54663086847,"no","OS01G0279100","Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G56940) UniProtKB/Swiss-Prot;Acc:Q9M591]","Subunit of magnesium-protoporphyrin IX monomethyl ester cyclase (EC:1.14.13.81), Core component of FLU-YGL8-LCAA-POR complex, Chlorophyll biosynthesis, Chloroplast development (Os01t0279100-01);Similar to Magnesium-protoporphyrin ix monomethyl ester cyclase (Fragment). (Os01t0279100-02)",1,9874379,9876678,"GO:0048529;GO:0015995;GO:0015979;GO:0046872;GO:0055114;GO:0016491;GO:0005506;GO:0009536;GO:0009507;GO:0009658;GO:1901401;GO:0009534;GO:0009535;GO:0009706;GO:0009941;GO:0036068","magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity;chlorophyll biosynthetic process;photosynthesis;metal ion binding;oxidation-reduction process;oxidoreductase activity;iron ion binding;plastid;chloroplast;chloroplast organization;regulation of tetrapyrrole metabolic process;chloroplast thylakoid;chloroplast thylakoid membrane;chloroplast inner membrane;chloroplast envelope;light-independent chlorophyll biosynthetic process","Catalysis of the reaction: magnesium protoporphyrin IX 13-monomethyl ester + 3 NADPH + 3 H+ + 3 O2 = divinylprotochlorophyllide + 3 NADP+ + 5 H2O. [EC:1.14.13.81];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid];Any process that modulates the frequency, rate or extent of tetrapyrrole metabolic process. [GOC:mengo_curators, GOC:TermGenie];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];The inner, i.e. lumen-facing, lipid bilayer of the chloroplast envelope; also faces the chloroplast stroma. [GOC:tb];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors, which occur in the absence of light. [GOC:yaf, PMID:12242396, UniPathway:UPA00670]"]
["OS01T0296200-00",1,1,-1.05256823181066,"OS01G0296200",null,20.268022303469,1.73814018952801,2.07985425594629,8.52951842088091,"no","OS01G0296200","Os01g0296200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V1G9]","Similar to polygalacturonase. (Os01t0296200-00)",1,10830393,10831757,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0006468;GO:0005524;GO:0004672;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;protein phosphorylation;ATP binding;protein kinase activity;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS01T0375200-02",1,1,0.0121014748524092,"OS01G0375200",null,518.773030153513,529.337775511853,422.965648742003,633.973794495697,"no","OS01G0375200","Os01g0375200 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZCV1]","Similar to shikimate biosynthesis protein aroDE. (Os01t0375200-01);Similar to shikimate biosynthesis protein aroDE. (Os01t0375200-02);Similar to shikimate biosynthesis protein aroDE. (Os01t0375200-03)",1,15479968,15493392,"GO:0019632;GO:0003855;GO:0004764;GO:0050661;GO:0055114;GO:0003824;GO:0009423;GO:0009570","shikimate metabolic process;3-dehydroquinate dehydratase activity;shikimate 3-dehydrogenase (NADP+) activity;NADP binding;oxidation-reduction process;catalytic activity;chorismate biosynthetic process;chloroplast stroma","The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids. [CHEBI:36208, GOC:sm, ISBN:0198547684];Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O. [EC:4.2.1.10, RHEA:21099];Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+. [EC:1.1.1.25];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds. [GOC:sm, ISBN:0198547684];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS01T0559000-02",1,1,0.29374030677116303,"OS01G0559000",null,51.254290558684,47.9081311561171,84.5059183934008,37.0487849359332,"no","OS01G0559000","Os01g0559000 protein [Source:UniProtKB/TrEMBL;Acc:Q5JKQ4]","Protein of unknown function DUF1000 family protein. (Os01t0559000-01);Similar to Thioredoxin family Trp26. (Os01t0559000-02)",1,21167873,21172622]
["OS01T0609900-02",1,1,-0.0599343410787115,"OS01G0609900",null,2744.60007252865,3053.32227481029,2402.86391945197,3159.12808268955,"no","OS01G0609900","Os01g0609900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDA9]","Similar to Pleiotropic drug resistance protein 4. (Os01t0609900-01);Similar to PDR-like ABC transporter (PDR4 ABC transporter). (Os01t0609900-02)",1,24107086,24115287,"GO:0042626;GO:0016021;GO:0005886;GO:0055085;GO:0006810;GO:0016887;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;integral component of membrane;plasma membrane;transmembrane transport;transport;ATPase activity;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0650000-01",1,1,-0.22198438997635303,"OS01G0650000",null,30.0479411821764,51.286119895033,43.2642556597637,26.4703737976443,"no","OS01G0650000","Os01g0650000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JKU2]","Similar to esterase. (Os01t0650000-01);Lipase, GDSL domain containing protein. (Os01t0650000-02)",1,26230738,26234611]
["OS01T0710800-01",1,1,0.0182944148285621,"OS01G0710800",null,170.159212726016,244.852233703139,202.488212336473,217.819387451693,"no","OS01G0710800","Os01g0710800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7B5]","Conserved hypothetical protein. (Os01t0710800-01);Hypothetical protein. (Os01t0710800-02)",1,29534257,29536164]
["OS01T0719125-00",1,1,-0.9908133764172591,"OS01G0719125",null,0,18.1015600987988,9.10859642352587,0,"no","OS01G0719125","Os01g0719125 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7I7]","Hypothetical protein. (Os01t0719125-00)",1,29965869,29970694]
["OS01T0750100-02",1,1,0.14872896344512102,"OS01G0750100",null,330.783148216616,235.512008546859,274.514467570569,353.276013755942,"no","OS01G0750100","Os01g0750100 protein [Source:UniProtKB/TrEMBL;Acc:Q94J08]","Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13). (Os01t0750100-01);Similar to WRKY13 transcription factor. (Os01t0750100-02);Transcriptional repressor, Regulation of abiotic and biotic stress signaling pathway (Os01t0750100-03)",1,31409132,31410736,"GO:0003700;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0810000-02",1,1,-0.0130486113446275,"OS01G0810000",null,551.192894070747,622.71896304279,657.42409884874,505.918056956177,"no","OS01G0810000","Probable U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8S1Z1]","Utp11 family protein. (Os01t0810000-01);Utp11 family protein. (Os01t0810000-02)",1,34409226,34412529,"GO:0006364;GO:0032040;GO:0005730;GO:0005634;GO:0042274;GO:0009561","rRNA processing;small-subunit processome;nucleolus;nucleus;ribosomal small subunit biogenesis;megagametogenesis","Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12068309, PMID:12957375, PMID:15120992, PMID:15590835];A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. [GOC:jl];The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. [GOC:jl, GOC:mtg_plant]"]
["OS01T0851600-01",1,1,-0.19359688824718202,"OS01G0851600",null,255.832733775965,172.927484252957,170.748386680719,204.16937250472,"no","OS01G0851600","Os01g0851600 protein [Source:UniProtKB/TrEMBL;Acc:Q8LQ34]","3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein. (Os01t0851600-01)",1,36666965,36668075,"GO:0016132;GO:0008202;GO:0003865;GO:0016627;GO:0006629;GO:0005737;GO:0055114;GO:0016021;GO:0016020","brassinosteroid biosynthetic process;steroid metabolic process;3-oxo-5-alpha-steroid 4-dehydrogenase activity;oxidoreductase activity, acting on the CH-CH group of donors;lipid metabolic process;cytoplasm;oxidation-reduction process;integral component of membrane;membrane","The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:0198547684];Catalysis of the reaction: a 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-delta(4)-steroid + reduced acceptor. [EC:1.3.99.5];Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0896400-01",1,1,0.0571062231198725,"OS01G0896400",null,136.385381866013,90.2634401448596,104.79789607515,131.002294787351,"no","OS01G0896400","Os01g0896400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L419]","Similar to JHL23J11.5 protein. (Os01t0896400-01)",1,38959429,38960235,"GO:0008270;GO:0016020;GO:0016021","zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0950300-01",1,1,-0.285633061819007,"OS01G0950300",null,491.15173688353,236.379008253455,274.07846665368,322.774328099256,"no","OS01G0950300","Os01g0950300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VD69]","Conserved hypothetical protein. (Os01t0950300-01)",1,41854018,41854878]
["OS01T0950833-01",0.9419568795102051,1,0.0674160809858335,"OS01G0950833",null,36.6825672987055,45.3371611863988,42.9790684562512,42.9643432336483,"no","OS01G0950833","Os01g0950833 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCU0]","Hypothetical gene. (Os01t0950833-01)",1,41867363,41869684]
["OS02T0105400-01",1,1,1.7884014176273602,"OS02G0105400",null,1.04309512547735,7.0426343281781,0,27.9306907852166,"no","OS02G0105400","L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0E4Q5]","Similar to L-lactate dehydrogenase A (EC 1.1.1.27) (LDH-A). (Os02t0105400-01);Similar to L-lactate dehydrogenase. (Os02t0105400-02)",2,295324,299167,"GO:0004459;GO:0016616;GO:0055114;GO:0016491;GO:0005737;GO:0005975;GO:0019752;GO:0003824","L-lactate dehydrogenase activity;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;cytoplasm;carbohydrate metabolic process;carboxylic acid metabolic process;catalytic activity","Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+. [EC:1.1.1.27, RHEA:23447];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0165000-02",1,1,0.0409392823095647,"OS02G0165000",null,1331.55765758793,755.550303845679,939.354862467169,1207.82718167247,"no","OS02G0165000","Os02g0165000 protein [Source:UniProtKB/TrEMBL;Acc:Q6H6V3]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-02)",2,3495320,3500149,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0205200-01",1,1,0.0968768762213769,"OS02G0205200",null,89.6943449095016,54.5545039607542,66.3479445387937,87.9198254805014,"no","OS02G0205200","Os02g0205200 protein [Source:UniProtKB/TrEMBL;Acc:Q0E2X7]","Similar to Unidentified precursor. (Os02t0205200-01)",2,5912613,5914192]
["OS02T0265400-01",1,1,-0.127335406158978,"OS02G0265400",null,650.924674486098,876.479620866688,500.378727944674,897.991698981801,"no","OS02G0265400","Vacuolar protein sorting-associated protein 29 [Source:Projected from Arabidopsis thaliana (AT3G47810) UniProtKB/Swiss-Prot;Acc:Q9STT2]","Similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) (hVPS29) (PEP11). Splice isoform 2. (Os02t0265400-01);Similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) (hVPS29) (PEP11). Splice isoform 2. (Os02t0265400-02)",2,9458447,9463762,"GO:0030904;GO:0042147;GO:0008565;GO:0005768;GO:0006886;GO:0008270;GO:0005829;GO:0001881;GO:0006623;GO:0007034;GO:0005771;GO:0016020;GO:0043231","retromer complex;retrograde transport, endosome to Golgi;protein transporter activity;endosome;intracellular protein transport;zinc ion binding;cytosol;receptor recycling;protein targeting to vacuole;vacuolar transport;multivesicular body;membrane;intracellular membrane-bounded organelle","A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35. [GOC:bf, PMID:26220253, PMID:27385586, PMID:9700157];The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. [GOC:jl, PMID:10873832, PMID:16936697];Enables the directed movement of proteins into, out of or within a cell, or between cells. [ISBN:0198506732];A vacuole to which materials ingested by endocytosis are delivered. [ISBN:0198506732, PMID:19696797];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process that results in the return of receptor molecules to an active state and an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal. [GOC:dph];The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators];The directed movement of substances into, out of or within a vacuole. [GOC:ai];A type of endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm. [PMID:11566881, PMID:16533950];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators]"]
["OS02T0437300-01",1,1,0.0203987792559603,"OS02G0437300",null,429.966685115665,354.444703145832,427.754535586504,367.82670597903,"no","OS02G0437300","Os02g0437300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF79]","Conserved hypothetical protein. (Os02t0437300-01)",2,13962353,13967573]
["OS02T0473200-03",1,1,-0.15389168340269502,"OS02G0473200",null,46.6526236174,106.133491298753,63.6606593642598,73.666954771759,"no","OS02G0473200","Os02g0473200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6I2]","Peptidase aspartic, catalytic domain containing protein. (Os02t0473200-01);Similar to OSIGBa0137O04.7 protein. (Os02t0473200-02);Hypothetical conserved gene. (Os02t0473200-03)",2,16114933,16120438,"GO:0004190;GO:0006508;GO:0016020;GO:0016021;GO:0008233;GO:0030163;GO:0016787;GO:0008234","aspartic-type endopeptidase activity;proteolysis;membrane;integral component of membrane;peptidase activity;protein catabolic process;hydrolase activity;cysteine-type peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE]"]
["OS02T0550700-01",1,1,-0.0333403886616194,"OS02G0550700",null,799.095072830105,820.376219938133,874.231739805282,708.243038592928,"no","OS02G0550700","Os02g0550700 protein [Source:UniProtKB/TrEMBL;Acc:Q69T30]","Similar to Nucleolar autoantigen-like protein. (Os02t0550700-01)",2,20728337,20731638,"GO:0000176;GO:0000178;GO:0006396;GO:0017091;GO:0000177;GO:0071038;GO:0071035;GO:0043928;GO:0034475;GO:0034427;GO:0000467;GO:0071028;GO:0034473;GO:0034476;GO:0071042","nuclear exosome (RNase complex);exosome (RNase complex);RNA processing;AU-rich element binding;cytoplasmic exosome (RNase complex);nuclear polyadenylation-dependent tRNA catabolic process;nuclear polyadenylation-dependent rRNA catabolic process;exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay;U4 snRNA 3'-end processing;nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5';exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);nuclear mRNA surveillance;U1 snRNA 3'-end processing;U5 snRNA 3'-end processing;nuclear polyadenylation-dependent mRNA catabolic process","A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. [PMID:17174896, PMID:20531386, PMID:26726035];A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. [PMID:17174896, PMID:20531386, PMID:26726035];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];Interacting selectively and non-covalently with a region of RNA containing frequent adenine and uridine bases. [GOC:bf, GOC:mah, PMID:7892223, PMID:8578590];A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. [PMID:17174896, PMID:20531386, PMID:26726035];The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of an aberrant or incorrectly modified transfer RNA (tRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target tRNA. [GOC:dgf, GOC:krc];The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, including RNA fragments released as part of processing the primary transcript into multiple mature rRNA species, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA. [GOC:dgf, GOC:krc, PMID:15173578, PMID:15572680, PMID:15935758, PMID:17652137, PMID:18591258];The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail. [GOC:mtg_mpo];Any process involved in forming the mature 3' end of a U4 snRNA molecule. [GOC:mah];The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction. [GOC:krc, GOC:mah];Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 3'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. [GOC:krc, PMID:10690410];The set of processes involved in identifying and degrading defective or aberrant mRNAs within the nucleus. [GOC:dgf, GOC:krc, PMID:18644474];Any process involved in forming the mature 3' end of a U1 snRNA molecule. [GOC:mah];Any process involved in forming the mature 3' end of a U5 snRNA molecule. [GOC:mah];The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA. [GOC:dgf, GOC:krc, PMID:15145828, PMID:15828860, PMID:16431988, PMID:17643380, PMID:18000032, PMID:18644474]"]
["OS02T0601000-01",1,1,-0.259202779040682,"OS02G0601000",null,6.11552351655692,2.05866052682091,6.82993546722877,0,"no","OS02G0601000","Os02g0601000 protein [Source:UniProtKB/TrEMBL;Acc:Q6K5H1]","Conserved hypothetical protein. (Os02t0601000-01)",2,23513097,23513707,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0639300-01",1,1,-0.19603646507582,"OS02G0639300",null,27.5198558245062,20.5866052682091,9.75705066746967,32.2372693428505,"no","OS02G0639300","Os02g0639300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VM45]","Conserved hypothetical protein. (Os02t0639300-01)",2,25646627,25648251]
["OS02T0669700-01",1,1,0.0285984962432827,"OS02G0669700",null,141.676294800235,149.252888194516,181.481142414936,115.272660074435,"no","OS02G0669700","Os02g0669700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESQ6]","Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0669700-01)",2,27188020,27191898,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS02T0725200-02",1,1,0.122440655409092,"OS02G0725200",null,89.7653730571968,108.861538276298,147.702029024003,68.5182379760934,"no","OS02G0725200","Os02g0725200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z5K4]","SET domain containing protein. (Os02t0725200-01);Similar to Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I. (Os02t0725200-02)",2,30144260,30148692,"GO:0018026;GO:0016279;GO:0009507;GO:0032259;GO:0008168;GO:0016740;GO:0030785","peptidyl-lysine monomethylation;protein-lysine N-methyltransferase activity;chloroplast;methylation;methyltransferase activity;transferase activity;[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity","The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine. [RESID:AA0076];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate. [PMID:12054878];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine. [EC:2.1.1.127]"]
["OS02T0731400-01",1,1,-0.053447652682990496,"OS02G0731400",null,263.986765131374,351.001619822965,287.832994690355,304.788728332405,"no","OS02G0731400","Os02g0731400 protein [Source:UniProtKB/TrEMBL;Acc:B7F9Y7]","Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin). (Os02t0731400-01)",2,30467578,30468413,"GO:0046658;GO:0009055;GO:0016020;GO:0016021","anchored component of plasma membrane;electron carrier activity;membrane;integral component of membrane","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0756800-01",1,1,0.0977201496744906,"OS02G0756800",null,120.65140025613,140.425257364346,114.375642299353,164.997556413851,"no","OS02G0756800","Os02g0756800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DXF4]","Phosphate-induced protein 1 conserved region family protein. (Os02t0756800-01)",2,31840547,31841768]
["OS02T0813166-00",1,1,0.00890902395428233,"OS02G0813166",null,113.137185056303,57.6424947509855,78.0564053397573,93.7811471792015,"no","OS02G0813166","Os02g0813166 protein [Source:UniProtKB/TrEMBL;Acc:C7IZ90]","Cyclin-like F-box domain containing protein. (Os02t0813166-00)",2,34824765,34825820]
["OS03T0102500-01",1,1,-0.0323315865020473,"OS03G0102500","EXPB8",1282.2214306381,1194.02310555613,1083.03262408913,1338.33512120319,"no","OS03G0102500","Expansin-B8 [Source:UniProtKB/Swiss-Prot;Acc:Q10T32]","Similar to Beta-expansin precursor (Fragment). (Os03t0102500-01)",3,179190,180206,"GO:0019953;GO:0005618;GO:0005576;GO:0016020;GO:0071555","sexual reproduction;cell wall;extracellular region;membrane;cell wall organization","A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. [GOC:jl, http://en.wikipedia.org/wiki/Sexual_reproduction, ISBN:0387520546];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS03T0135150-00",1,1,1.1598587785338599,"OS03G0135150",null,7.68794079468986,0,17.1775931864865,0,"no","OS03G0135150","Os03g0135150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VSN9]","Hypothetical protein. (Os03t0135150-00)",3,1948605,1949028]
["OS03T0141200-01",1,1,-0.0238121242525976,"OS03G0141200","BAMY2",132.5030095254,97.7863750239933,97.5705066746967,128.949077371402,"no","OS03G0141200","Beta-amylase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10RZ1]","Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2). (Os03t0141200-01)",3,2272966,2276161,"GO:0016161;GO:0000272;GO:0008152;GO:0016798;GO:0005975;GO:0009536;GO:0009507;GO:0016787;GO:0102229","beta-amylase activity;polysaccharide catabolic process;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;plastid;chloroplast;hydrolase activity;amylopectin maltohydrolase activity","Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. [EC:3.2.1.2];The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: n H2O + an exposed unphosphorylated, unbranched malto-oligosaccharide tail on amylopectin <=> amylopectin + maltose [EC:3.2.1.2]"]
["OS03T0182600-01",1,1,0.00679896020868572,"OS03G0182600",null,1720.83230809786,2273.41401582948,2107.41416078787,1905.70019287588,"no","OS03G0182600","40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:Q10QU9]","Ribosomal protein S2 family protein. (Os03t0182600-01);Similar to 40S ribosomal protein SA. (Os03t0182600-02);Similar to 40S ribosomal protein SA. (Os03t0182600-03)",3,4336742,4338901,"GO:0015935;GO:0005840;GO:0005622;GO:0006412;GO:0003735;GO:0022627;GO:0030686;GO:0000028;GO:0000461;GO:0000447;GO:0005737;GO:0030529;GO:0006407","small ribosomal subunit;ribosome;intracellular;translation;structural constituent of ribosome;cytosolic small ribosomal subunit;90S preribosome;ribosomal small subunit assembly;endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA);endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);cytoplasm;intracellular ribonucleoprotein complex;rRNA export from nucleus","The smaller of the two subunits of a ribosome. [GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The small subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. [GOC:krc, GOC:vw, PMID:12150911, PMID:12957375, PMID:15120992];The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit. [GOC:jl];Endonucleolytic cleavage at the 3'-end of the SSU-rRNA from an originally tricistronic rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. [GOC:krc, PMID:10690410];Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins. [GOC:ma, GOC:mah]"]
["OS03T0231800-02",1,1,-0.0418676699617416,"OS03G0231800",null,447.376295708746,628.650897537402,458.701194837784,586.547953606491,"no","OS03G0231800","Os03g0231800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DTR1]","Similar to Squalene monooxygenase 1 (EC 1.14.99.7). (Os03t0231800-02);Similar to squalene monooxygenase. (Os03t0231800-03)",3,6957671,6962492,"GO:0004506;GO:0050660;GO:0016491;GO:0055114;GO:0016021;GO:0016020;GO:0016126;GO:0005783;GO:0004497","squalene monooxygenase activity;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;integral component of membrane;membrane;sterol biosynthetic process;endoplasmic reticulum;monooxygenase activity","Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). [RHEA:25285];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732]"]
["OS03T0279400-02",1,1,-6.4489999805903905E-3,"OS03G0279400",null,3321.975773327,3552.83854178496,3153.56285153437,3690.58889732109,"no","OS03G0279400","Arginine biosynthesis bifunctional protein ArgJ, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10N79]","Similar to predicted protein. (Os03t0279400-01);Similar to Arginine biosynthesis bifunctional protein argJ 1 [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)] [Contains: Arginine biosynthesis bifunctional protein argJ1 alpha chain; Arginine biosynthesis bifunctional protein argJ1 beta chain]. (Os03t0279400-02)",3,9506763,9510932,"GO:0003824;GO:0006526;GO:0008152;GO:0008652;GO:0016746;GO:0009536;GO:0009507;GO:0006592;GO:0004358;GO:0004042;GO:0016740;GO:0009570;","catalytic activity;arginine biosynthetic process;metabolic process;cellular amino acid biosynthetic process;transferase activity, transferring acyl groups;plastid;chloroplast;ornithine biosynthetic process;glutamate N-acetyltransferase activity;acetyl-CoA:L-glutamate N-acetyltransferase activity;transferase activity;chloroplast stroma;","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [CHEBI:29016, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways resulting in the formation of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. [GOC:jl, ISBN:0192801023];Catalysis of the reaction: N(2)-acetyl-L-ornithine + L-glutamate = N-acetyl-L-glutamate + L-ornithine. [EC:2.3.1.35, RHEA:15352];Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+). [EC:2.3.1.1, RHEA:24295];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];"]
["OS03T0301200-01",1,1,0.15580568839274,"OS03G0301200",null,283.572080689784,458.532331506498,334.699717165911,492.036949345814,"no","OS03G0301200","COBRA-like protein 7, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10MP1]","COBRA-like protein 7 precursor. (Os03t0301200-01);Glycosyl-phosphatidyl inositol-anchored, plant domain containing protein. (Os03t0301200-02)",3,10599142,10601525,"GO:0031225;GO:0016049;GO:0010215;GO:0016020;GO:0016021","anchored component of membrane;cell growth;cellulose microfibril organization;membrane;integral component of membrane","The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. [GOC:ai];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0370900-01",1,1,0.10185633333355901,"OS03G0370900",null,258.353217991343,128.735262482529,240.629923646185,174.775400753877,"no","OS03G0370900","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10KT5]","Similar to Cytochrome P450. (Os03t0370900-01);Similar to Cytochrome P450. (Os03t0370900-02)",3,14553015,14556804,"GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037","monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS03T0575500-02",1,1,0.101759067626895,"OS03G0575500",null,457.375207314259,391.554003900016,384.427796298305,526.542065933225,"no","OS03G0575500","Os03g0575500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KHJ8]","Conserved hypothetical protein. (Os03t0575500-01);Conserved hypothetical protein. (Os03t0575500-02)",3,21030442,21031298]
["OS03T0592500-01",1,1,0.0212085534718322,"OS03G0592500","RCABP89",526.56319192049,630.635330952381,745.465574652061,428.870173118032,"no","OS03G0592500","Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q10HD0]","Similar to Photosystem II type II chlorophyll a/b binding protein (Fragment). (Os03t0592500-01);Similar to Chloroplast chlorophyll a-b binding protein (Fragment). (Os03t0592500-02)",3,22000043,22001240,"GO:0009579;GO:0009536;GO:0009535;GO:0009523;GO:0009522;GO:0009507;GO:0018298;GO:0015979;GO:0009765;GO:0016168;GO:0016020;GO:0016021;GO:0010287;GO:0009941;GO:0009768;GO:0031409;GO:0009416;GO:0046872","thylakoid;plastid;chloroplast thylakoid membrane;photosystem II;photosystem I;chloroplast;protein-chromophore linkage;photosynthesis;photosynthesis, light harvesting;chlorophyll binding;membrane;integral component of membrane;plastoglobule;chloroplast envelope;photosynthesis, light harvesting in photosystem I;pigment binding;response to light stimulus;metal ion binding","A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. [GOC:ds, GOC:mah, ISBN:0943088399, PMID:9821949];A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). [GOC:ds, GOC:mah, ISBN:0140514031, PMID:9821949];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The covalent or noncovalent attachment of a chromophore to a protein. [GOC:ma];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. [GOC:sm];Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. [GOC:jid, ISBN:0716731363, ISBN:0816017360];Interacting selectively and non-covalently with a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS03T0674700-01",1,1,0.426993191106385,"OS03G0674700","GRF9",58.3597949691428,30.0265804416672,86.1071882313091,32.721987053906,"no","OS03G0674700","Growth-regulating factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRG8]","Similar to Growth-regulating factor 3. (Os03t0674700-01)",3,26679255,26682044,"GO:0032502;GO:0005634;GO:0006355;GO:0006351;GO:0005524","developmental process;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;ATP binding","A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. [GOC:isa_complete];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0719900-02",1,1,-0.062950927666664,"OS03G0719900",null,82.8247571274677,6.9717680794721606E-4,79.2884154905937,7.2484961168789409E-4,"no","OS03G0719900","Os03g0719900 protein [Source:UniProtKB/TrEMBL;Acc:Q93VE2]","Similar to Peptide transporter 1. (Os03t0719900-01);Similar to Peptide transporter 1. (Os03t0719900-02);Similar to Peptide transporter. (Os03t0719900-03);Similar to Peptide transporter 1. (Os03t0719900-04)",3,29185055,29190361,"GO:0006857;GO:0006810;GO:0005215;GO:0016020;GO:0016021","oligopeptide transport;transport;transporter activity;membrane;integral component of membrane","The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0773150-00",1,1,-0.0614486702697556,"OS03G0773150",null,2149.74641939886,2047.20352406902,1837.93091355099,2184.01194888379,"no","OS03G0773150","40S ribosomal protein S29, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XZX4]","40S ribosomal protein S29. (Os03t0773150-00)",3,32041607,32043400,"GO:0022627;GO:0003735;GO:0008270;GO:0015935;GO:0005840;GO:0005622;GO:0006412;GO:0005634;GO:0003723;GO:0003677","cytosolic small ribosomal subunit;structural constituent of ribosome;zinc ion binding;small ribosomal subunit;ribosome;intracellular;translation;nucleus;RNA binding;DNA binding","The small subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The smaller of the two subunits of a ribosome. [GOC:mah];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0781000-01",1,1,-0.0848311162305524,"OS03G0781000",null,173.273166302446,236.745960584405,200.019538683128,186.58540740862,"no","OS03G0781000","Os03g0781000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W3T1]","Conserved hypothetical protein. (Os03t0781000-01)",3,32384836,32388229,"GO:0005525","GTP binding","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai]"]
["OS03T0811400-00",1,1,-0.128923346361003,"OS03G0811400",null,43.8279185353246,58.671825014396,36.1010874696378,57.6363300372176,"no","OS03G0811400","Helix-loop-helix DNA-binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XZF8]","Similar to DNA binding protein. (Os03t0811400-00)",3,33973760,33975525,"GO:0005634;GO:0046983;GO:0003677","nucleus;protein dimerization activity;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0855700-02",1,1,0.12082205428201201,"OS03G0855700",null,1215.55308678062,1079.37027234479,1401.87443728941,1093.520266276,"no","OS03G0855700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10AD8]","Nucleic acid-binding, OB-fold domain containing protein. (Os03t0855700-01);Hypothetical conserved gene. (Os03t0855700-02)",3,36082364,36096479,"GO:0000723;GO:0003678;GO:0032508;GO:0004386;GO:0006281","telomere maintenance;DNA helicase activity;DNA duplex unwinding;helicase activity;DNA repair","Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS04T0165700-01",1,1,-0.0646120607243993,"OS04G0165700",null,3447.11675549925,4280.98456552409,3205.62226264294,4184.00680592208,"no","OS04G0165700","Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G61440) UniProtKB/Swiss-Prot;Acc:Q9S757]","Cysteine synthase (EC 2.5.1.47). (Os04t0165700-01)",4,4457411,4461765,"GO:0030170;GO:0006535;GO:0004124;GO:0005737;GO:0019344;GO:0005739;GO:0008652;GO:0016740;GO:0050017;GO:0019499;GO:0005507;GO:0006955;GO:0019500;GO:0080147;GO:0009507","pyridoxal phosphate binding;cysteine biosynthetic process from serine;cysteine synthase activity;cytoplasm;cysteine biosynthetic process;mitochondrion;cellular amino acid biosynthetic process;transferase activity;L-3-cyanoalanine synthase activity;cyanide metabolic process;copper ion binding;immune response;cyanide catabolic process;root hair cell development;chloroplast","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators];Catalysis of the reaction: O3-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate. [EC:4.2.99.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: L-cysteine + HCN = sulfide + L-3-cyanoalanine. [EC:4.4.1.9, MetaCyc:L-3-CYANOALANINE-SYNTHASE-RXN];The chemical reactions and pathways involving cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration, reacting with the ferric form of cytochrome aa3 and thus blocking the electron transport chain. [ISBN:0198506732];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05];The chemical reactions and pathways resulting in the breakdown of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration. [ISBN:0198506732];The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state. [PMID:19675148];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS04T0280700-01",1,1,0.0221981321597921,"OS04G0280700",null,44.7874064368358,23.0178535254696,40.7800114966671,28.0766066866823,"no","OS04G0280700","Os04g0280700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W850]","Conserved hypothetical protein. (Os04t0280700-01)",4,11934116,11936662]
["OS04T0401700-01",1,1,-4.46547354883498,"OS04G0401700",null,493.329140317521,2.52367535912205,15.7854421521475,6.65912842584506,"no","OS04G0401700",null,"Potassium transporter, Potassium mediated growth, Salt tolerance (Os04t0401700-01);Similar to Isoform 2 of Potassium transporter 1. (Os04t0401700-02);Potassium transporter 1 (OsHAK1). Splice isoform 2. (Os04t0401700-03)",4,19886674,19892355,"GO:0016020;GO:0005886;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016021","membrane;plasma membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0457500-01",1,1,-0.0719151724521544,"OS04G0457500",null,1182.33454653434,974.775759449702,988.389232614677,1063.82988831407,"no","OS04G0457500","Os04g0457500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WAX0]","Similar to H0523F07.13 protein. (Os04t0457500-01)",4,22855680,22860859,"GO:0006751;GO:0036374;GO:0006508","glutathione catabolic process;glutathione hydrolase activity;proteolysis","The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, ISBN:0198506732];Catalysis of the reaction: glutathione + H2O = L-cysteinylglycine + L-glutamate. [EC:3.4.19.13, GOC:imk];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS04T0479000-01",1,1,-0.184157320702656,"OS04G0479000",null,80.5210596346662,94.698384233762,104.400442141925,49.8212344389508,"no","OS04G0479000","Os04g0479000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBQ0]","Similar to OSIGBa0116M22.9 protein. (Os04t0479000-01);Synaptonemal complex component, Initiation of meiotic recombination, Recruitment of PAIR2 onto meiotic chromosomes (Os04t0479000-02)",4,23955482,23959974,"GO:0051321;GO:0005515;GO:0005694;GO:0005634;GO:0005524;GO:0000166;GO:0007131;GO:0042138;GO:0007129","meiotic cell cycle;protein binding;chromosome;nucleus;ATP binding;nucleotide binding;reciprocal meiotic recombination;meiotic DNA double-strand break formation;synapsis","Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779];The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. [GOC:elh, GOC:jl, PMID:11529427];The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Synapsis begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete. [GOC:mtg_cell_cycle, PMID:22582262, PMID:23117617]"]
["OS04T0493300-01",1,1,0.15078258790684,"OS04G0493300",null,286.740920197482,188.453988496532,235.276773122066,292.271080840736,"no","OS04G0493300","Os04g0493300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JC40]","Similar to H0522A01.11 protein. (Os04t0493300-01);Similar to H0522A01.11 protein. (Os04t0493300-02)",4,24667261,24670980,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS04T0538100-01",1,1,-0.14747648837238,"OS04G0538100",null,154.075538485968,280.547717892232,239.047741353007,153.342424727934,"no","OS04G0538100","Os04g0538100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBE3]","Elongation factor G, III and V domain containing protein. (Os04t0538100-01)",4,26917910,26919741,"GO:0006414;GO:0003746;GO:0003924;GO:0009507;GO:0005525;GO:0006412;GO:0005739;GO:0009536;GO:0005622;GO:0000166;GO:0070125","translational elongation;translation elongation factor activity;GTPase activity;chloroplast;GTP binding;translation;mitochondrion;plastid;intracellular;nucleotide binding;mitochondrial translational elongation","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in a mitochondrion. [GOC:mah]"]
["OS04T0610100-01",1,1,0.134545803959692,"OS04G0610100",null,439.298439272672,372.617555354585,511.269454975411,380.009023465723,"no","OS04G0610100","Os04g0610100 protein [Source:UniProtKB/TrEMBL;Acc:C7J0W0]","Similar to OSIGBa0152L12.2 protein. (Os04t0610100-01)",4,30920567,30923708,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS04T0633800-00",1,1,0.273210904394855,"OS04G0633800",null,22.4235862273754,29.8505776389032,41.6815265044886,21.4915128952337,"no","OS04G0633800","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFH6]","Protein kinase, catalytic domain domain containing protein. (Os04t0633800-00)",4,32244877,32248172,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0639300-01",1,1,0.08237343685959479,"OS04G0639300",null,18.3465705496708,18.5279447413882,28.295446935662,10.7457564476168,"no","OS04G0639300","Os04g0639300 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9P0]","Conserved hypothetical protein. (Os04t0639300-01)",4,32483088,32484417,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0674800-01",1,1,0.045270600582320096,"OS04G0674800","GLU6",485.164865646849,460.110627744474,414.674653367461,560.733109175642,"no","OS04G0674800","Endoglucanase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q0J930]","Similar to CEL1=CELLULASE 1 (Fragment). (Os04t0674800-01)",4,34450562,34454341,"GO:0030245;GO:0000272;GO:0008810;GO:0008152;GO:0016798;GO:0005975;GO:0030246;GO:0004553;GO:0016787;GO:0005576;GO:0003824","cellulose catabolic process;polysaccharide catabolic process;cellulase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;carbohydrate binding;hydrolase activity, hydrolyzing O-glycosyl compounds;hydrolase activity;extracellular region;catalytic activity","The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators];Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. [EC:3.2.1.4];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS05T0107600-01",1,1,-0.247717566988627,"OS05G0107600",null,204.226211924025,100.663387646228,131.324283813768,125.46221849346,"no","OS05G0107600","Os05g0107600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DLD4]","ABC transporter-like domain containing protein. (Os05t0107600-01);Hypothetical conserved gene. (Os05t0107600-02)",5,421200,431613,"GO:0042626;GO:0016887;GO:0055085;GO:0006810;GO:0016021;GO:0005524;GO:0000166","ATPase activity, coupled to transmembrane movement of substances;ATPase activity;transmembrane transport;transport;integral component of membrane;ATP binding;nucleotide binding","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS05T0153300-00",1,1,-0.0103335146405457,"OS05G0153300",null,100.906138023189,97.7863750239933,46.8338432038544,150.440590266636,"no","OS05G0153300","Os05g0153300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WI13]","Lipase, class 3 domain containing protein. (Os05t0153300-00)",5,3069666,3074392,"GO:0006629;GO:0016787","lipid metabolic process;hydrolase activity","The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS05T0227700-02",1,1,-0.0748901313157395,"OS05G0227700",null,842.537297372127,993.508626190564,790.04262260751,953.125854864852,"no","OS05G0227700","Eukaryotic translation initiation factor 3 subunit L [Source:UniProtKB/TrEMBL;Acc:Q0DJU1]","Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein. (Os05t0227700-01);Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein. (Os05t0227700-02);Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein. (Os05t0227700-03)",5,7762104,7768316,"GO:0003743;GO:0006413;GO:0005852;GO:0005737;GO:0033290;GO:0016282;GO:0006446;GO:0001731;GO:0006412","translation initiation factor activity;translational initiation;eukaryotic translation initiation factor 3 complex;cytoplasm;eukaryotic 48S preinitiation complex;eukaryotic 43S preinitiation complex;regulation of translational initiation;formation of translation preinitiation complex;translation","Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. [PMID:15904532];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A protein complex composed of the small ribosomal subunit, eIF3, eIF1A, methionyl-initiatior methionine and a capped mRNA. The complex is initially positioned at the 5'-end of the capped mRNA. [GOC:hjd, PMID:15145049];A protein complex composed of the 40S ribosomal subunit plus eIF1A, eIF3, and eIF2-GTP-bound methionyl-initiator methionine tRNA. [GOC:hjd, PMID:15145049];Any process that modulates the frequency, rate or extent of translational initiation. [GOC:go_curators];The joining of the small ribosomal subunit, ternary complex, and mRNA. [GOC:hjd];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]"]
["OS05T0347400-01",1,1,0.0987394109958019,"OS05G0347400","G1L9",436.862017824531,440.466084244937,404.365535904254,535.110193893218,"no","OS05G0347400","Protein G1-like9 [Source:UniProtKB/Swiss-Prot;Acc:Q5W659]","Protein of unknown function DUF640 domain containing protein. (Os05t0347400-01)",5,16362771,16364006,"GO:0090698;GO:0009299;GO:0009416;GO:0005634;GO:0007275;GO:0003677;GO:0006355;GO:0006351","post-embryonic plant morphogenesis;mRNA transcription;response to light stimulus;nucleus;multicellular organism development;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","The process, occurring after plant embryonic development, by which anatomical structures are generated and organized. [GOC:tb];The cellular synthesis of messenger RNA (mRNA) from a DNA template. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0361900-02",1,1,0.581550837750046,"OS05G0361900",null,5.2191403216995,0,7.81021914143781,0,"no","OS05G0361900","Os05g0361900 protein [Source:UniProtKB/TrEMBL;Acc:Q6L4L8]","Mitochondrial carrier protein domain containing protein. (Os05t0361900-01);Similar to Mitochondrial carrier C12B10.09. (Os05t0361900-02);Similar to Mitochondrial carrier C12B10.09. (Os05t0361900-04)",5,17276754,17280614,"GO:0006810;GO:0016020;GO:0016021;GO:0009941;GO:0006839;GO:0005743;GO:0055085;GO:1901962;GO:0000095","transport;membrane;integral component of membrane;chloroplast envelope;mitochondrial transport;mitochondrial inner membrane;transmembrane transport;S-adenosyl-L-methionine transmembrane transport;S-adenosyl-L-methionine transmembrane transporter activity","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Transport of substances into, out of or within a mitochondrion. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of S-adenosyl-L-methionine across a membrane. [GOC:TermGenie, PMID:10497160];Enables the transfer of S-adenosylmethionine from one side of a membrane to the other. S-adenosylmethionine is S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. [GOC:ai]"]
["OS05T0417200-01",1,1,0.133902626383193,"OS05G0417200","MRL7L",214.400580957358,147.597592011225,211.727999484092,185.477347078772,"no","OS05G0417200","Thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0DI48]","Thioredoxin-like fold domain containing protein. (Os05t0417200-01)",5,20438344,20440193,"GO:0009570;GO:0009536;GO:0009507;GO:0006355;GO:0009658","chloroplast stroma;plastid;chloroplast;regulation of transcription, DNA-templated;chloroplast organization","The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid]"]
["OS05T0458000-01",1,1,0.03384360150173,"OS05G0458000",null,104.270485498981,184.650062385526,184.141440523467,111.636900664783,"no","OS05G0458000","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:Q65XG2]","Zinc finger, DHHC-type domain containing protein. (Os05t0458000-01);Zinc finger, DHHC-type domain containing protein. (Os05t0458000-02)",5,22488533,22492117,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS05T0504800-01",1,1,-0.12630128564748,"OS05G0504800",null,10.6154844299948,23.9887916897939,21.0883472777712,10.6153047971103,"no","OS05G0504800","Os05g0504800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WP61]","Similar to Protein kinase domain containing protein. (Os05t0504800-01)",5,24835787,24839449,"GO:0007166;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS05T0547700-01",1,1,0.0143777371057903,"OS05G0547700",null,1018.29966367677,662.938306557686,1085.92848423633,612.148282618803,"no","OS05G0547700","Os05g0547700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DG86]","Conserved hypothetical protein. (Os05t0547700-01);Conserved hypothetical protein. (Os05t0547700-02)",5,27168591,27171366]
["OS05T0592300-02",0.9281279985113381,1,-0.12829268195575702,"OS05G0592300",null,778.981125607142,931.351198091766,678.560810920788,886.24538866417,"no","OS05G0592300","Os05g0592300 protein [Source:UniProtKB/TrEMBL;Acc:Q0DFG5]","Protein of unknown function DUF1637 family protein. (Os05t0592300-01);Similar to Cupin, RmlC-type. (Os05t0592300-02)",5,29507007,29509972,"GO:0016702;GO:0055114","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS05T0594100-02",1,1,-0.0717980372000253,"OS05G0594100",null,2454.07222257263,1869.4762848905,1910.80539672575,2202.84114587974,"no","OS05G0594100","Os05g0594100 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKG4]","Similar to GDA2 protein. (Os05t0594100-01);Similar to GDA2 protein. (Os05t0594100-02)",5,29584835,29586141]
["OS06T0147000-01",1,1,-0.117302691002877,"OS06G0147000",null,77.4632978763877,115.284989501971,80.0078154732513,97.6886949783349,"no","OS06G0147000","Os06g0147000 protein [Source:UniProtKB/TrEMBL;Acc:Q5VP44]","Conserved hypothetical protein. (Os06t0147000-01)",6,2453481,2454046,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0204400-02",1,1,-0.208545576260725,"OS06G0204400",null,323.782995071041,504.966019718806,382.302864272474,334.904187828058,"no","OS06G0204400","Os06g0204400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DDS1]","Similar to Aminoalcoholphosphotransferase. (Os06t0204400-01);Similar to ECPT-type aminoalcoholphosphotransferase. (Os06t0204400-02)",6,5276639,5286101,"GO:0016020;GO:0016021;GO:0016780;GO:0008654;GO:0016740","membrane;integral component of membrane;phosphotransferase activity, for other substituted phosphate groups;phospholipid biosynthetic process;transferase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor). [GOC:jl, http://www.chem.qmul.ac.uk/iubmb/enzyme/EC2/intro.html];The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0264800-01",1,1,-0.206266002044097,"OS06G0264800",null,108.795714307612,219.742537422338,196.849815736561,87.9198254805014,"no","OS06G0264800","Os06g0264800 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z6P4]","Similar to Threonine endopeptidase. (Os06t0264800-01);Non-protein coding transcript. (Os06t0264800-04)",6,8751332,8752603,"GO:0009579;GO:0016020;GO:0016021","thylakoid;membrane;integral component of membrane","A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0479400-01",1,1,-0.0750886089177312,"OS06G0479400",null,459.410861358877,358.168719352723,336.487621140441,439.627442366477,"no","OS06G0479400","Os06g0479400 protein [Source:UniProtKB/TrEMBL;Acc:Q69Y84]","Similar to Phenylcoumaran benzylic ether reductase homolog TH6. (Os06t0479400-01)",6,16244360,16247112]
["OS06T0551800-01",1,1,0.07437395209777149,"OS06G0551800",null,36.6931410993416,31.9092381657241,47.8095482706014,24.4221737445837,"no","OS06G0551800","Os06g0551800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KM95]","Bulb-type lectin domain domain containing protein. (Os06t0551800-01)",6,20915614,20918494,"GO:0016310;GO:0016301;GO:0004674;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;protein serine/threonine kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0566300-00",1,1,0.04517988361698,"OS06G0566300",null,352.491980468211,454.037579190352,354.196695337038,477.990040390635,"no","OS06G0566300","Os06g0566300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXY2]","Similar to zinc transporter 4. (Os06t0566300-00)",6,21824893,21826815,"GO:0005886;GO:0071577;GO:0005385;GO:0046873;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0006829","plasma membrane;zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;metal ion transmembrane transporter activity;metal ion transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;zinc II ion transport","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS06T0632200-02",1,1,0.0344488452998966,"OS06G0632200",null,1844.84959416134,1273.28153583873,1344.01281760557,1849.46946340449,"no","OS06G0632200","Os06g0632200 protein [Source:UniProtKB/TrEMBL;Acc:Q67VM1]","Similar to tryptophan synthase-related. (Os06t0632200-01);Similar to tryptophan synthase-related. (Os06t0632200-02)",6,25590293,25594488,"GO:0006568;GO:0004834;GO:0000162;GO:0030170","tryptophan metabolic process;tryptophan synthase activity;tryptophan biosynthetic process;pyridoxal phosphate binding","The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:0198547684];Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. [RHEA:10535];The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:0471331309, MetaCyc:TRPSYN-PWY];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732]"]
["OS06T0674000-01",1,1,-0.0430214066301308,"OS06G0674000",null,799.244931467427,648.393270086658,716.517661296448,688.58902783624,"no","OS06G0674000","Os06g0674000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X090]","Conserved hypothetical protein. (Os06t0674000-01)",6,27967268,27972701,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0710900-01",1,1,-0.059604029622740196,"OS06G0710900",null,72.3670282792569,79.2584302826051,55.6151888045771,89.8735993800681,"no","OS06G0710900","Os06g0710900 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z9G1]","Conserved hypothetical protein. (Os06t0710900-01)",6,30064110,30065313]
["OS07T0104750-00",1,1,0.233082246398429,"OS07G0104750",null,35.6738871799154,17.4986144779778,20.4898064016863,42.006138840684,"no","OS07G0104750","Os07g0104750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X1Q2]","Similar to H0502G05.13 protein. (Os07t0104750-00)",7,264528,270024]
["OS07T0147800-00",1,1,0.11192953580430201,"OS07G0147800",null,159.219383686815,125.067405724317,175.128176367756,132.092772743023,"no","OS07G0147800","Os07g0147800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X2K1]","Hypothetical conserved gene. (Os07t0147800-00)",7,2469673,2472942]
["OS07T0151800-01",1,1,0.0354337393049036,"OS07G0151800",null,325.142000296943,354.089610613197,307.347096025295,388.773539206193,"no","OS07G0151800","Os07g0151800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIY3]","Conserved hypothetical protein. (Os07t0151800-01)",7,2721785,2723535,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0204500-01",1,1,-0.0629964793669682,"OS07G0204500",null,21.6452468707228,0,20.7204275992811,0,"no","OS07G0204500","Os07g0204500 protein [Source:UniProtKB/TrEMBL;Acc:Q7XB62]","Survival protein SurE family protein. (Os07t0204500-01);Survival protein SurE family protein. (Os07t0204500-02)",7,5613825,5623660,"GO:0016311;GO:0016787;GO:0008252;GO:0005829","dephosphorylation;hydrolase activity;nucleotidase activity;cytosol","The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the reaction: a nucleotide + H2O = a nucleoside + phosphate. [EC:3.1.3.31];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS07T0466200-02",1,1,0.125748697277782,"OS07G0466200",null,96.9007430415946,99.4861979685642,131.383088453473,82.8895588414323,"no","OS07G0466200","Os07g0466200 protein [Source:UniProtKB/TrEMBL;Acc:Q7EYM6]","Hypothetical conserved gene. (Os07t0466200-01);Conserved hypothetical protein. (Os07t0466200-02)",7,16512417,16521870]
["OS07T0539300-01",1,1,0.0307261023765131,"OS07G0539300",null,3838.0854248387,3341.09293301462,3421.9803692804,3911.73788772612,"no","OS07G0539300","Os07g0539300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YVU4]","Glycoside hydrolase, family 17 protein. (Os07t0539300-01);Glycoside hydrolase, family 17 protein. (Os07t0539300-02)",7,21238284,21241263,"GO:0004553;GO:0005975;GO:0016787;GO:0030247;GO:0046658","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;polysaccharide binding;anchored component of plasma membrane","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah]"]
["OS07T0589000-01",1,1,0.16362105961727902,"OS07G0589000",null,121.291216411712,73.0824487021424,106.351852275419,111.365112275302,"no","OS07G0589000","Os07g0589000 protein [Source:UniProtKB/TrEMBL;Acc:Q7EZ26]","Lateral organ boundaries, LOB domain containing protein. (Os07t0589000-01)",7,23996515,23997565]
["OS07T0602900-01",1,1,0.07821620542307339,"OS07G0602900",null,133.076958334397,196.789101482696,188.811786446237,159.43174394037,"no","OS07G0602900","Ninja-family protein Os07g0602900 [Source:UniProtKB/Swiss-Prot;Acc:Q6YVY6]","Protein of unknown function DUF1675 domain containing protein. (Os07t0602900-01);Similar to UPF0737 protein 1. (Os07t0602900-02)",7,24633587,24636319,"GO:0007165;GO:0005634","signal transduction;nucleus","The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS07T0645200-01",1,1,0.13337238725549702,"OS07G0645200",null,43.8279185353246,24.7039263218509,41.9553178701196,33.2141562926339,"no","OS07G0645200","Os07g0645200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9F5]","Similar to FAT domain-containing protein. (Os07t0645200-01)",7,26903009,26908544,"GO:0000123;GO:0016301;GO:0016310;GO:0016573;GO:0005634;GO:0016740","histone acetyltransferase complex;kinase activity;phosphorylation;histone acetylation;nucleus;transferase activity","A protein complex that possesses histone acetyltransferase activity. [GOC:mah];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The modification of a histone by the addition of an acetyl group. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0691700-01",1,1,0.0119768071989367,"OS07G0691700",null,91.7328527483539,134.84226450677,105.376147208672,123.087755672702,"no","OS07G0691700","Os07g0691700 protein [Source:UniProtKB/TrEMBL;Acc:Q84NR1]","Conserved hypothetical protein. (Os07t0691700-01)",7,29431144,29435262,"GO:0005856;GO:0030036","cytoskeleton;actin cytoskeleton organization","Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:dph, GOC:jl, GOC:mah]"]
["OS08T0153600-00",1,1,-1.4744796727453999E-3,"OS08G0153600",null,49.9713122762409,27.5265429035468,65.2312195991185,12.1874707984149,"no","OS08G0153600","Pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G16835) UniProtKB/Swiss-Prot;Acc:Q9M4P3]","Pentatricopeptide repeat domain containing protein. (Os08t0153600-00)",8,3082739,3086311,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0202300-01",1,1,-0.09523402819589019,"OS08G0202300",null,19.3658244690969,24.7039263218509,7.88353374926393,33.3710581706092,"no","OS08G0202300","Os08g0202300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCR7]","Hypothetical conserved gene. (Os08t0202300-01);Conserved hypothetical protein. (Os08t0202300-02);Reverse transcriptase domain containing protein. (Os08t0202300-03);Similar to SHR5-receptor-like kinase (Fragment). (Os08t0202300-04)",8,5942660,5960134,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0015074;GO:0004190;GO:0006508;GO:0003676;GO:0008270","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;DNA integration;aspartic-type endopeptidase activity;proteolysis;nucleic acid binding;zinc ion binding","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0285200-01",1,1,0.114671855746447,"OS08G0285200",null,1.07798231524379,7.38564226116414,8.17486373679613,0.988945907840833,"no","OS08G0285200","Os08g0285200 protein [Source:UniProtKB/TrEMBL;Acc:Q0J6Q2]","WD40 repeat-like domain containing protein. (Os08t0285200-01)",8,11263369,11266927,"GO:0003677;GO:0005634;GO:0006974;GO:2000001","DNA binding;nucleus;cellular response to DNA damage stimulus;regulation of DNA damage checkpoint","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];Any process that modulates the frequency, rate or extent of a DNA damage checkpoint. [GOC:obol]"]
["OS08T0335500-01",1,1,-0.11547431481284301,"OS08G0335500",null,354.700363960302,247.039263218509,262.464662954934,292.98841812851,"no","OS08G0335500","Os08g0335500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XEL8]","Hypothetical conserved gene. (Os08t0335500-01)",8,14997552,15006831,"GO:0016310;GO:0016301;GO:0030246;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;carbohydrate binding;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0435900-01",1,1,-0.0654217893060024,"OS08G0435900",null,540.062668197185,622.719987665861,708.648883898022,402.582821857461,"no","OS08G0435900","Chlorophyll a-b binding protein 4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G47470) UniProtKB/Swiss-Prot;Acc:P27521]","Similar to LHC I type IV chlorophyll binding protein (Fragment). (Os08t0435900-01);Similar to LHC I type IV chlorophyll binding protein (Fragment). (Os08t0435900-03);Non-protein coding transcript. (Os08t0435900-04)",8,21171278,21172654,"GO:0010287;GO:0009941;GO:0009768;GO:0031409;GO:0016168;GO:0009416;GO:0009535;GO:0009579;GO:0009536;GO:0009523;GO:0009522;GO:0009507;GO:0018298;GO:0015979;GO:0009765;GO:0016020;GO:0016021","plastoglobule;chloroplast envelope;photosynthesis, light harvesting in photosystem I;pigment binding;chlorophyll binding;response to light stimulus;chloroplast thylakoid membrane;thylakoid;plastid;photosystem II;photosystem I;chloroplast;protein-chromophore linkage;photosynthesis;photosynthesis, light harvesting;membrane;integral component of membrane","A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids. [GOC:tair_curators, PMID:16461379];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. [GOC:jid, ISBN:0716731363, ISBN:0816017360];Interacting selectively and non-covalently with a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:mah];Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. [GOC:ds, GOC:mah, ISBN:0943088399, PMID:9821949];A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). [GOC:ds, GOC:mah, ISBN:0140514031, PMID:9821949];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The covalent or noncovalent attachment of a chromophore to a protein. [GOC:ma];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. [GOC:sm];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0480100-01",1,1,-0.18601596598543702,"OS08G0480100",null,301.739526642001,457.083785286723,288.847341541924,378.180987490386,"no","OS08G0480100","Os08g0480100 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z246]","Signal recognition particle receptor, alpha subunit, N-terminal domain containing protein. (Os08t0480100-01);Similar to predicted protein. (Os08t0480100-02)",8,23717763,23722249,"GO:0006614;GO:0005047;GO:0006886;GO:0006810;GO:0005525;GO:0003924;GO:0005785;GO:0055114;GO:0016491;GO:0005783","SRP-dependent cotranslational protein targeting to membrane;signal recognition particle binding;intracellular protein transport;transport;GTP binding;GTPase activity;signal recognition particle receptor complex;oxidation-reduction process;oxidoreductase activity;endoplasmic reticulum","The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. [ISBN:0716731363];Interacting selectively and non-covalently with the signal recognition particle. [ISBN:0198506732];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684];A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732]"]
["OS08T0524400-00",1,1,0.0560082021835963,"OS08G0524400",null,216.081830918345,170.868823726136,172.699796814213,229.568433199087,"no","OS08G0524400","Os08g0524400 protein [Source:UniProtKB/TrEMBL;Acc:Q84QW4]","Protein of unknown function DUF568, DOMON-like domain containing protein. (Os08t0524400-00)",8,26086563,26087515,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0561800-01",1,1,-0.0143869812133496,"OS08G0561800",null,824.717200107147,735.131960063232,689.750206409366,854.620980784332,"no","OS08G0561800","Os08g0561800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJG8]","Similar to Mov34/MPN/PAD-1 family protein. (Os08t0561800-01)",8,28135572,28137264]
["OS09T0115466-00",1,1,-0.16371030533205203,"OS09G0115466",null,0,7.23326973875109,0,6.4573295074906,"no","OS09G0115466","Os09g0115466 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIH4]","Hypothetical protein. (Os09t0115466-00)",9,1213266,1217909]
["OS09T0325300-01",1,1,-0.11867418365729301,"OS09G0325300",null,139.637786961383,96.7570447605829,97.5705066746967,120.157094823352,"no","OS09G0325300","Os09g0325300 protein [Source:UniProtKB/TrEMBL;Acc:B7EEW3]","Hypothetical protein. (Os09t0325300-01)",9,9544294,9546478]
["OS09T0419200-02",1,1,-0.0458380057586774,"OS09G0419200",null,11.304933948721,8.74653634388195,16.0992332674327,3.32516654154714,"no","OS09G0419200","Os09g0419200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ERR4]","NAD(P)-binding domain containing protein. (Os09t0419200-01);Similar to Cinnamoyl-CoA reductase. (Os09t0419200-02)",9,15076258,15079326,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS09T0477700-01",1,1,0.014015640426600499,"OS09G0477700",null,112.117931136877,95.7277144971724,128.7930688106,81.081616832018,"no","OS09G0477700","Os09g0477700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQZ7]","Conserved hypothetical protein. (Os09t0477700-01)",9,18281423,18286861,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS09T0506900-01",1,1,-0.11943092321157502,"OS09G0506900",null,50.6916549040533,53.8901233485096,65.7214600263147,30.5513685128903,"no","OS09G0506900","Os09g0506900 protein [Source:UniProtKB/TrEMBL;Acc:B7ECI1]","Conserved hypothetical protein. (Os09t0506900-01);Similar to cDNA clone:J013073G03, full insert sequence. (Os09t0506900-02)",9,19630562,19634603]
["OS09T0551800-00",1,1,0.324007288299586,"OS09G0551800",null,44.8471724547508,40.1438802730078,73.1778800060225,33.2141562926339,"no","OS09G0551800","Os09g0551800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQZ3]","Helicase-like, DEXD box c2 type domain containing protein. (Os09t0551800-00)",9,21859819,21868166,"GO:0032508;GO:0016818;GO:0004003;GO:0008026;GO:0004386;GO:0006139;GO:0016787;GO:0003676;GO:0003677;GO:0005524;GO:0000166","DNA duplex unwinding;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent DNA helicase activity;ATP-dependent helicase activity;helicase activity;nucleobase-containing compound metabolic process;hydrolase activity;nucleic acid binding;DNA binding;ATP binding;nucleotide binding","The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. [EC:3.6.1.3, GOC:jl];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS10T0127900-01",1,1,-0.15420031315408803,"OS10G0127900",null,72.3017569073831,133.644482901038,104.41225756377,80.6572832286899,"no","OS10G0127900","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q33B97]","Similar to F-box domain containing protein, expressed. (Os10t0127900-01);Similar to F-box domain containing protein, expressed. (Os10t0127900-02);Similar to F-box domain containing protein, expressed. (Os10t0127900-03)",10,1743579,1752159]
["OS10T0130600-00",1,1,-0.100229530335165,"OS10G0130600",null,86.6365831512231,49.4078526437019,67.3236496055407,59.5901039367843,"no","OS10G0130600","Os10g0130600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRB6]","Hypothetical conserved gene. (Os10t0130600-00)",10,1871104,1875535,"GO:0005886;GO:0007165;GO:0006952;GO:0043531","plasma membrane;signal transduction;defense response;ADP binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS10T0349300-01",1,1,-0.18059859446074902,"OS10G0349300",null,53.00120381016,27.7919171120823,21.4655114684333,49.8212344389508,"no","OS10G0349300","Cortical cell delineating protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8LM52]","Similar to Root-specific protein (RCc2 protein). (Os10t0349300-01)",10,10563123,10563841]
["OS10T0413101-01",0.9702972810843791,1,-0.0604163228106634,"OS10G0413101",null,881.95044827901,733.13001666165,754.946828023291,793.894893446987,"no","OS10G0413101","Os10g0413101 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XU33]","Similar to H0815C01.6 protein. (Os10t0413101-01)",10,14408001,14409842]
["OS10T0473400-01",1,1,0.0140340978219581,"OS10G0473400",null,194.298498055519,264.377358514283,190.322368832029,272.837119072343,"no","OS10G0473400","Non-lysosomal glucosylceramidase [Source:UniProtKB/TrEMBL;Acc:Q7XDG7]","Beta-glucosidase, GBA2 type domain containing protein. (Os10t0473400-01);Similar to predicted protein. (Os10t0473400-02);Similar to catalytic. (Os10t0473400-03)",10,17584547,17592697,"GO:0006680;GO:0004348;GO:0004553;GO:0003824;GO:0016020;;GO:0008152;GO:0016798;GO:0006629;GO:0016787","glucosylceramide catabolic process;glucosylceramidase activity;hydrolase activity, hydrolyzing O-glycosyl compounds;catalytic activity;membrane;;metabolic process;hydrolase activity, acting on glycosyl bonds;lipid metabolic process;hydrolase activity","The chemical reactions and pathways resulting in the breakdown of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group. [GOC:ai];Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine. [EC:3.2.1.45];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];;The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS10T0524500-01",1,1,0.587259304268557,"OS10G0524500",null,0,7.07942127159153,8.7813456007227,1.8547056723083002,"no","OS10G0524500","HOTHEAD protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8H094]","Putative glucose-methanol-choline oxidoreductase, Regulation of tapetum degeneration and pollen exine formation, Anther cuticle formation (Os10t0524500-01)",10,20377272,20379571,"GO:0016614;GO:0050660;GO:0016491;GO:0055114;GO:0016829","oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;lyase activity","Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS10T0524600-01",1,1,0.12317873660338,"OS10G0524600",null,102.944645862042,56.6131644875751,87.813456007227,85.9660515809347,"no","OS10G0524600","Os10g0524600 protein [Source:UniProtKB/TrEMBL;Acc:Q8RVC2]","Peptidase S8, subtilisin-related domain containing protein. (Os10t0524600-01)",10,20389644,20392184,"GO:0004252;GO:0006508;GO:0016787;GO:0008233","serine-type endopeptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS10T0561900-01",1,1,0.12385794717364301,"OS10G0561900",null,228.265233360901,137.215394880342,200.302965530564,197.941106626218,"no","OS10G0561900","Putative dual specificity protein phosphatase DSP8 [Source:Projected from Arabidopsis thaliana (AT2G35680) UniProtKB/Swiss-Prot;Acc:Q9ZQP1]","Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os10t0561900-01);Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os10t0561900-02);Similar to Protein-tyrosine phosphatase mitochondrial 1. (Os10t0561900-03);Similar to Protein-tyrosine phosphatase mitochondrial 1. (Os10t0561900-04)",10,22161170,22165059,"GO:0035335;GO:0016311;GO:0004725;GO:0008138;GO:0016791;GO:0006470;GO:0004439","peptidyl-tyrosine dephosphorylation;dephosphorylation;protein tyrosine phosphatase activity;protein tyrosine/serine/threonine phosphatase activity;phosphatase activity;protein dephosphorylation;phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity","The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [GOC:mah];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate. [EC:3.1.3.36, RHEA:22767]"]
["OS11T0139700-01",1,1,0.0918476978356592,"OS11G0139700",null,3273.84358919681,3635.59449036573,4155.52787927533,3208.09674308852,"no","OS11G0139700","Os11g0139700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSE6]","Hypothetical conserved gene. (Os11t0139700-01)",11,1835867,1837930]
["OS11T0199000-01",1,1,-0.0705680392599653,"OS11G0199000",null,62.1668789864397,102.992766611292,63.4940075413392,93.7814095992335,"no","OS11G0199000","Os11g0199000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZN9]","Similar to cDNA, clone: J065168H08, full insert sequence. (Os11t0199000-01)",11,4965240,4967120,"GO:0016020;GO:0005794;GO:0000139;GO:0071555;GO:0016740;GO:0015018","membrane;Golgi apparatus;Golgi membrane;cell wall organization;transferase activity;galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein. [EC:2.4.1.135]"]
["OS11T0293800-00",1,1,0.14323609594907802,"OS11G0293800",null,501.472928357668,548.633030397773,682.01784165613,477.697718444058,"no","OS11G0293800","Os11g0293800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y182]","Similar to ZCN17. (Os11t0293800-00)",11,10732822,10734815]
["OS11T0495950-00",1,1,-0.290867228193292,"OS11G0495950",null,6.132591476732,1.02933026341046,5.8542304004818,0,"no","OS11G0495950","Os11g0495950 protein [Source:UniProtKB/TrEMBL;Acc:Q2R3Y8]","FAD-linked oxidase, FAD-binding, subdomain 2 domain containing protein. (Os11t0495950-00)",11,17599930,17601552,"GO:0016614;GO:0050660;GO:0016491;GO:0055114;GO:0003824","oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS11T0526000-01",1,1,-0.38591969118114705,"OS11G0526000",null,0,14.6952118982611,0,11.24611317789,"no","OS11G0526000","Os11g0526000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y305]","Hypothetical gene. (Os11t0526000-01)",11,19087538,19088040]
["OS11T0660400-01",1,1,0.0513306361303183,"OS11G0660400",null,461.490328007128,485.41768643143,573.729808071987,407.475419922169,"no","OS11G0660400",null,"Hypothetical protein. (Os11t0660400-01);Similar to Plasma membrane H+-ATPase. (Os11t0660400-02)",11,26503050,26507799,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0105300-02",1,1,0.124288686869469,"OS12G0105300",null,21.3567070872702,47.2334167591097,56.5256105945876,18.2355801477175,"no","OS12G0105300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:A3CE59]","Actin-binding FH2 domain containing protein. (Os12t0105300-01);Actin-binding FH2 domain containing protein. (Os12t0105300-02);Actin-binding FH2 domain containing protein. (Os12t0105300-03)",12,273660,282070,"GO:0009707;GO:0009658","chloroplast outer membrane;chloroplast organization","The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope. [GOC:tb];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid]"]
["OS12T0143400-00",1,1,0.0327235306592739,"OS12G0143400",null,43.8714794976789,63.2124528709667,67.2469422155319,42.2936476905723,"no","OS12G0143400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QXT7]","Similar to RED family protein. (Os12t0143400-00)",12,2128576,2135182,"GO:0005634","nucleus","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0190200-02",1,1,1.08084020642859,"OS12G0190200",null,0,26.3525777465836,55.7427545752883,0,"no","OS12G0190200","PsbP domain-containing protein 4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G77090) UniProtKB/Swiss-Prot;Acc:O49292]","Similar to Thylakoid lumenal 29.8 kDa protein, chloroplast precursor. (Os12t0190200-01);Similar to tat pathway signal sequence family protein. (Os12t0190200-02)",12,4556144,4558043,"GO:0019898;GO:0009654;GO:0009523;GO:0015979;GO:0005509;GO:0009507;GO:0009534;GO:0009570;GO:0009579;GO:0031977","extrinsic component of membrane;photosystem II oxygen evolving complex;photosystem II;photosynthesis;calcium ion binding;chloroplast;chloroplast thylakoid;chloroplast stroma;thylakoid;thylakoid lumen","The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. [GOC:dos, GOC:jl, GOC:mah];A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). [GOC:cjm, InterPro:IPR002683];A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. [GOC:ds, GOC:mah, ISBN:0943088399, PMID:9821949];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The volume enclosed by a thylakoid membrane. [GOC:mah, GOC:pz]"]
["OS12T0284000-04",1,1,-0.0484598491957796,"OS12G0284000",null,1558.41854027758,1763.69054984254,1738.1864529768,1474.1869489975,"no","OS12G0284000","Os12g0284000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QTS8]","Regulator of chromosome condensation, RCC1 domain containing protein. (Os12t0284000-01);Similar to predicted protein. (Os12t0284000-02);Regulator of chromosome condensation, RCC1 domain containing protein. (Os12t0284000-03);Hypothetical conserved gene. (Os12t0284000-04)",12,10771046,10775430]
["OS12T0291400-01",1,1,0.00610164745105847,"OS12G0291400",null,181.120237231004,530.387557943473,556.923270389517,157.600105431961,"no","OS12G0291400","Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:Q2QTJ7]","Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0291400-01)",12,11277247,11278306,"GO:0015977;GO:0009853;GO:0016984;GO:0009536;GO:0009507;GO:0015979;GO:0055114;GO:0016491;GO:0004497;GO:0016829","carbon fixation;photorespiration;ribulose-bisphosphate carboxylase activity;plastid;chloroplast;photosynthesis;oxidation-reduction process;oxidoreductase activity;monooxygenase activity;lyase activity","A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates). [GOC:jl, GOC:mah];A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:0198506732];Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate. [EC:4.1.1.39];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS12T0489800-01",1,1,0.0434945568688817,"OS12G0489800",null,28.5391097439323,33.967898692545,44.8824330703605,19.537738995667,"no","OS12G0489800","NB-ARC domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QQL8]","Similar to NBS-LRR protein (Fragment). (Os12t0489800-01)",12,18369705,18373748,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS12T0575300-01",1,1,0.11128781882748,"OS12G0575300",null,771.118343609393,399.334252130349,429.700132148037,834.613442068515,"no","OS12G0575300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QN78]","Conserved hypothetical protein. (Os12t0575300-01)",12,23739977,23740564,"GO:0006508;GO:0008234;GO:0016020;GO:0016021","proteolysis;cysteine-type peptidase activity;membrane;integral component of membrane","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0635400-01",1,1,-0.207767821052386,"OS12G0635400",null,18.3465705496708,3.08799079023137,0.9757050667469671,17.5839650961003,"no","OS12G0635400","Os12g0635400 protein [Source:UniProtKB/TrEMBL;Acc:C7JA34]","VQ domain containing protein. (Os12t0635400-01)",12,27238568,27239382]
["OS11T0592550-00","NA","NA","NA","OS11G0592550",null,0,0,0,0,"no","OS11G0592550","NA","Hypothetical protein. (Os11t0592550-00)","NA","NA","NA","NA","NA","NA"]
["OS11T0591300-00","NA","NA","-Inf","OS11G0591300",null,1.96385725651314,0,0,0,"no","OS11G0591300","NA","Hypothetical protein. (Os11t0591300-00)","NA","NA","NA","NA","NA","NA"]
["OS11T0578000-00","NA","NA","NA","OS11G0578000",null,0,0,0,0,"no","OS11G0578000","NA","Similar to TCP-1/cpn60 chaperonin. (Os11t0578000-00)","NA","NA","NA","NA","NA","NA"]
["OS11T0568700-01","NA","NA",1.37143121169837,"OS11G0568700",null,2.31119594782889,1.12025032083881,4.49427311409293,4.38380853093558,"no","OS11G0568700","NA","Conserved hypothetical protein. (Os11t0568700-01);START-like domain domain containing protein. (Os11t0568700-02)","NA","NA","NA","NA","NA","NA"]
["OS11T0556400-00","NA","NA","NA","OS11G0556400",null,0,0,0,0,"no","OS11G0556400","NA","Serine/threonine protein kinase-related domain containing protein. (Os11t0556400-00)","NA","NA","NA","NA","NA","NA"]
["OS01T0107750-00","NA","NA","NA","OS01G0107750",null,0,0,0,0,"no","OS01G0107750","Os01g0107750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UWX7]","Hypothetical protein. (Os01t0107750-00)",1,412636,415516]
["OS01T0113150-00","NA","NA","-Inf","OS01G0113150",null,0,0.00213481402867935,0,0,"no","OS01G0113150","Os01g0113150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UX47]","Disease resistance protein domain containing protein. (Os01t0113150-00)",1,710956,714232,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS01T0119000-02","NA","NA","-Inf","OS01G0119000",null,0,3.56223935893806e-07,0,0,"no","OS01G0119000","Os01g0119000 protein [Source:UniProtKB/TrEMBL;Acc:Q9FTE0]","Glycosyltransferase AER61, uncharacterized domain containing protein. (Os01t0119000-01);Glycosyltransferase AER61, uncharacterized domain containing protein. (Os01t0119000-02)",1,1078565,1081597,"GO:0016757;GO:0016020;GO:0016021","transferase activity, transferring glycosyl groups;membrane;integral component of membrane","Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0121950-00","NA","NA","NA","OS01G0121950",null,0,0,0,0,"no","OS01G0121950","E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXN8]","Hypothetical conserved gene. (Os01t0121950-00)",1,1240943,1242391,"GO:0016567;GO:0007275;GO:0006511;GO:0046872;GO:0005634;GO:0008270","protein ubiquitination;multicellular organism development;ubiquitin-dependent protein catabolic process;metal ion binding;nucleus;zinc ion binding","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0132100-00","NA","NA",-0.650958828987363,"OS01G0132100",null,4.07701567770462,2.05866052682091,0,3.9075477991334,"no","OS01G0132100","Os01g0132100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KC99]","Leucine-rich repeat domain containing protein. (Os01t0132100-00)",1,1765373,1768669,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0137550-01","NA","NA",0.622335291297272,"OS01G0137550",null,3.0751754021218,5.01128710941219,4.17591837727328,8.27209847389867,"no","OS01G0137550","Os01g0137550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXQ6]","Similar to H0215A08.3 protein. (Os01t0137550-01)",1,2015899,2018829]
["OS01T0151750-00","NA","NA","NA","OS01G0151750",null,0,0,0,0,"no","OS01G0151750","Os01g0151750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYD0]","Hypothetical conserved gene. (Os01t0151750-00)",1,2801825,2802125]
["OS01T0154300-00","NA","NA","Inf","OS01G0154300",null,0,0,2.9271152002409,0.9768869497833491,"no","OS01G0154300","Os01g0154300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYP9]","Hypothetical conserved gene. (Os01t0154300-00)",1,2922561,2924802,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0157200-01","NA","NA","NA","OS01G0157200",null,0,0,0,0,"no","OS01G0157200","Os01g0157200 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZCD1]","Conserved hypothetical protein. (Os01t0157200-01)",1,3031479,3033009]
["OS01T0168450-00","NA","NA","NA","OS01G0168450",null,0,0,0,0,"no","OS01G0168450","Os01g0168450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYN9]","Hypothetical protein. (Os01t0168450-00)",1,3501187,3504618]
["OS01T0179901-01","NA","NA",-1.8735471400195,"OS01G0179901",null,5.09626959713077,2.05866052682091,0.9757050667469671,0.9768869497833491,"no","OS01G0179901","Os01g0179901 protein [Source:UniProtKB/TrEMBL;Acc:B9ETG6]","Conserved hypothetical protein. (Os01t0179901-01)",1,4175051,4177246]
["OS01T0192101-00","NA","NA","NA","OS01G0192101",null,0,0,0,0,"no","OS01G0192101","Os01g0192101 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UZB4]","Hypothetical protein. (Os01t0192101-00)",1,4949849,4951508]
["OS01T0201850-01","NA","NA","-Inf","OS01G0201850",null,1.01925391942615,0,0,0,"no","OS01G0201850","Os01g0201850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UZC9]","Hypothetical conserved gene. (Os01t0201850-01)",1,5581650,5588943]
["OS01T0209901-00","NA","NA","NA","OS01G0209901",null,0,0,0,0,"no","OS01G0209901","Os01g0209901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KCJ3]","Hypothetical protein. (Os01t0209901-00)",1,5983849,5985803]
["OS01T0218350-00","NA","NA","NA","OS01G0218350",null,0,0,0,0,"no","OS01G0218350","Os01g0218350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UZV4]","Hypothetical protein. (Os01t0218350-00)",1,6471818,6476650]
["OS01T0222900-01","NA","NA",-0.650958828987363,"OS01G0222900",null,2.03850783885231,1.02933026341046,0,1.9537738995667,"no","OS01G0222900","Os01g0222900 protein [Source:UniProtKB/TrEMBL;Acc:C7IX09]","Curculin-like (mannose-binding) lectin domain containing protein. (Os01t0222900-01)",1,6715521,6716305,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0233800-01","NA","NA",1.14097976548058,"OS01G0233800",null,3.4109353385898302,3.08799079023137,1.6325995067461498,12.6995303471835,"no","OS01G0233800","Os01g0233800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JPA1]","Similar to Viroid symptom modulation protein. (Os01t0233800-01)",1,7400509,7404310,"GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0005886;GO:0006468;GO:0005524;GO:0004672","intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;plasma membrane;protein phosphorylation;ATP binding;protein kinase activity","The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0240725-00","NA","NA","NA","OS01G0240725",null,0,0,0,0,"no","OS01G0240725",null,"Hypothetical protein. (Os01t0240725-00)",1,7776076,7776733]
["OS01T0248850-00","NA","NA","NA","OS01G0248850",null,0,0,0,0,"no","OS01G0248850",null,"Hypothetical gene. (Os01t0248850-00)",1,8193566,8194125]
["OS01T0251400-01","NA","NA","NA","OS01G0251400",null,0,0,0,0,"no","OS01G0251400","Os01g0251400 protein [Source:UniProtKB/TrEMBL;Acc:Q0JP13]","Conserved hypothetical protein. (Os01t0251400-01)",1,8305749,8306555]
["OS01T0264100-00","NA","NA",1.52381985933188,"OS01G0264100",null,1.01946769619081,0,0,2.93149362795747,"no","OS01G0264100","Os01g0264100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V0U6]","Similar to UDP-glucose pyrophosphorylase. (Os01t0264100-00)",1,8961073,8966217,"GO:0005737;GO:0070569;GO:0008152;GO:0016020;GO:0016021;GO:0003983;GO:0005977;GO:0006011","cytoplasm;uridylyltransferase activity;metabolic process;membrane;integral component of membrane;UTP:glucose-1-phosphate uridylyltransferase activity;glycogen metabolic process;UDP-glucose metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of an uridylyl group to an acceptor. [GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: alpha-D-glucose 1-phosphate + UTP = diphosphate + UDP-D-glucose. [EC:2.7.7.9, RHEA:19892];The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages. [ISBN:0198506732];The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai]"]
["OS01T0278975-00","NA","NA","-Inf","OS01G0278975",null,0,2.09698711964349,0,0,"no","OS01G0278975","Os01g0278975 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V150]","Hypothetical protein. (Os01t0278975-00)",1,9863798,9866492]
["OS01T0293900-00","NA","NA","Inf","OS01G0293900",null,0,0,0.993567082184976,1.14567407824192,"no","OS01G0293900","Os01g0293900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KCT0]","Similar to peroxidase 1. (Os01t0293900-00)",1,10701626,10703130,"GO:0098869;GO:0055114;GO:0006979;GO:0020037;GO:0004601","cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding;peroxidase activity","Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7]"]
["OS01T0305900-01","NA","NA",1.52313058686076,"OS01G0305900",null,2.03850783885231,0,1.95141013349393,3.9075477991334,"no","OS01G0305900","Os01g0305900 protein [Source:UniProtKB/TrEMBL;Acc:Q9FP39]","Similar to R2R3 Myb transcription factor MYB-IF35. (Os01t0305900-01)",1,11350507,11356863,"GO:0045893;GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","positive regulation of transcription, DNA-templated;cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0319400-01","NA","NA","NA","OS01G0319400",null,0,0,0,0,"no","OS01G0319400","Os01g0319400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V1T4]","Protein of unknown function DUF247, plant domain containing protein. (Os01t0319400-01)",1,12157459,12161767,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0326100-02","NA","NA","NA","OS01G0326100",null,0,0,0,0,"no","OS01G0326100","Os01g0326100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JN60]","Similar to Peroxidase component PR-2 and/or 4 (Fragment). (Os01t0326100-01);Non-protein coding transcript. (Os01t0326100-02)",1,12509590,12511125,"GO:0009506;GO:0009505;GO:0009664;GO:0004601;GO:0098869;GO:0055114;GO:0006979;GO:0020037","plasmodesma;plant-type cell wall;plant-type cell wall organization;peroxidase activity;cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208];A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS01T0340100-00","NA","NA","NA","OS01G0340100",null,0,0,0,0,"no","OS01G0340100","Os01g0340100 protein [Source:UniProtKB/TrEMBL;Acc:Q942L1]","Transcription factor, MADS-box domain containing protein. (Os01t0340100-00)",1,13363638,13364930,"GO:0045944;GO:0046983;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0000982;GO:0000987","positive regulation of transcription from RNA polymerase II promoter;protein dimerization activity;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding;core promoter proximal region sequence-specific DNA binding","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to modulate transcription by RNAP II. [GOC:txnOH];Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to the core promoter. The transcribed region might be described as a gene, cistron, or operon. [GOC:txnOH]"]
["OS01T0355700-00","NA","NA","NA","OS01G0355700",null,0,0,0,0,"no","OS01G0355700","Os01g0355700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V2F5]","NB-ARC domain containing protein. (Os01t0355700-00)",1,14318283,14319789,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS01T0366501-01","NA","NA","NA","OS01G0366501",null,0,0,0,0,"no","OS01G0366501","Os01g0366501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V2H0]","Hypothetical gene. (Os01t0366501-01)",1,14970988,14973090]
["OS01T0374600-00","NA","NA","Inf","OS01G0374600",null,0,0,1.09447702558829,3.0754586432186,"no","OS01G0374600","Os01g0374600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V333]","Similar to Laccase-21. (Os01t0374600-00)",1,15445662,15447633,"GO:0016722;GO:0048046;GO:0046274;GO:0052716;GO:0005507;GO:0055114;GO:0046872;GO:0016491;GO:0005576","oxidoreductase activity, oxidizing metal ions;apoplast;lignin catabolic process;hydroquinone:oxygen oxidoreductase activity;copper ion binding;oxidation-reduction process;metal ion binding;oxidoreductase activity;extracellular region","Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered. [GOC:mah];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. [GOC:ai];Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. [EC:1.10.3.2];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS01T0497400-00","NA","NA","NA","OS01G0497400",null,0,0,0,0,"no","OS01G0497400","Os01g0497400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V345]","Annexin domain containing protein. (Os01t0497400-00)",1,17105524,17106678,"GO:0005544;GO:0005509;GO:0009408;GO:0009409;GO:0009414;GO:0009651","calcium-dependent phospholipid binding;calcium ion binding;response to heat;response to cold;response to water deprivation;response to salt stress","Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. [GOC:jl];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]"]
["OS01T0500100-00","NA","NA","NA","OS01G0500100",null,0,0,0,0,"no","OS01G0500100","Os01g0500100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V398]","Conserved hypothetical protein. (Os01t0500100-00)",1,17230765,17231229]
["OS01T0520180-00","NA","NA","NA","OS01G0520180",null,0,0,0,0,"no","OS01G0520180","Os01g0520180 protein [Source:UniProtKB/TrEMBL;Acc:Q5QLW5]","Hypothetical conserved gene. (Os01t0520180-00)",1,18503273,18503755]
["OS01T0536433-00","NA","NA","NA","OS01G0536433",null,0,0,0,0,"no","OS01G0536433","Os01g0536433 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3M8]","Hypothetical protein. (Os01t0536433-00)",1,19507442,19508342]
["OS01T0549300-01","NA","NA","-Inf","OS01G0549300",null,2.11760790382918,1.5751991499402,0,0,"no","OS01G0549300","Os01g0549300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KD49]","Homeodomain-like domain containing protein. (Os01t0549300-01)",1,20518681,20521502,"GO:0005737;GO:0005840;GO:0003677;GO:0004364;GO:0006749","cytoplasm;ribosome;DNA binding;glutathione transferase activity;glutathione metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732]"]
["OS01T0570500-01","NA","NA","Inf","OS01G0570500",null,0,0,229.739160470867,9.1739987110284991E-6,"no","OS01G0570500","Os01g0570500 protein [Source:UniProtKB/TrEMBL;Acc:Q656Y0]","Similar to Dual specificity kinase 1. (Os01t0570500-01);Similar to Casein kinase. (Os01t0570500-02);Hypothetical conserved gene. (Os01t0570500-03);Similar to predicted protein. (Os01t0570500-04)",1,21878990,21883943,"GO:0008360;GO:0018105;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0006897;GO:0005524;GO:0000166;GO:0006468;GO:0004672","regulation of cell shape;peptidyl-serine phosphorylation;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;endocytosis;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity","Any process that modulates the surface configuration of a cell. [GOC:dph, GOC:go_curators, GOC:tb];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. [GOC:mah, ISBN:0198506732, ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0581800-01","NA","NA",1.50835597704291,"OS01G0581800",null,0,1.02933026341046,1.95141013349393,0.9768869497833491,"no","OS01G0581800","Os01g0581800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V4J7]","Hypothetical conserved gene. (Os01t0581800-01)",1,22552874,22554531]
["OS01T0583900-00","NA","NA","NA","OS01G0583900",null,0,0,0,0,"no","OS01G0583900","Os01g0583900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V4I0]","Similar to Translation initiation factor. (Os01t0583900-00)",1,22656369,22661862,"GO:0005525;GO:0003924","GTP binding;GTPase activity","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS01T0595001-00","NA","NA","NA","OS01G0595001",null,0,0,0,0,"no","OS01G0595001","Os01g0595001 protein [Source:UniProtKB/TrEMBL;Acc:Q8L4R5]","Conserved hypothetical protein. (Os01t0595001-00)",1,23313213,23313928]
["OS01T0602200-00","NA","NA","NA","OS01G0602200",null,0,0,0,0,"no","OS01G0602200","Os01g0602200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JLG7]","Cytochrome P450 monooxygenase, Tolerance to acetolactate synthase-inhibiting herbicides (pseudogene) (Os01t0602200-01)",1,23663277,23664241,"GO:0004497;GO:0005992;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0003824","monooxygenase activity;trehalose biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;catalytic activity","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0617650-00","NA","NA",-0.47442079053901903,"OS01G0617650",null,3.36852213534416,1.14598928344154,2.18383248609049,1.06551282971445,"no","OS01G0617650","Os01g0617650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5A3]","Similar to AAP4; acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter/ primary active transmembrane transporter. (Os01t0617650-00)",1,24554321,24555469,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0627550-00","NA","NA","NA","OS01G0627550",null,0,0,0,0,"no","OS01G0627550",null,"Hypothetical protein. (Os01t0627550-00)",1,25045913,25049352]
["OS01T0640400-00","NA","NA","NA","OS01G0640400",null,0,0,0,0,"no","OS01G0640400","Os01g0640400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5T0]","Hypothetical protein. (Os01t0640400-00)",1,25744765,25747784]
["OS01T0643900-01","NA","NA","NA","OS01G0643900",null,0,0,0,0,"no","OS01G0643900","Os01g0643900 protein [Source:UniProtKB/TrEMBL;Acc:Q5VP68]","Oleosin family protein. (Os01t0643900-01)",1,25923454,25924149,"GO:0012511;GO:0019915;GO:0016021;GO:0016020","monolayer-surrounded lipid storage body;lipid storage;integral component of membrane;membrane","A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. [GOC:mtg_sensu, ISBN:0943088372];The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. [GOC:dph, GOC:mah, GOC:tb, PMID:11102830];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0653500-00","NA","NA","NA","OS01G0653500",null,0,0,0,0,"no","OS01G0653500","Os01g0653500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5Z6]","Conserved hypothetical protein. (Os01t0653500-00)",1,26431968,26434327,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0664200-01","NA","NA","Inf","OS01G0664200",null,0,0,0,21.0460842316377,"no","OS01G0664200","Os01g0664200 protein [Source:UniProtKB/TrEMBL;Acc:Q94E23]","Similar to Ser Thr specific protein kinase-like protein. (Os01t0664200-01);Similar to Ser Thr specific protein kinase-like protein. (Os01t0664200-02)",1,27130541,27134194,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672;GO:0016020;GO:0016021","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0677000-01","NA","NA",-1.0719073845342,"OS01G0677000",null,1.01925391942615,3.08799079023137,0,1.9537738995667,"no","OS01G0677000","Glyoxal oxidase-like [Source:UniProtKB/TrEMBL;Acc:Q8S198]","Galactose oxidase/kelch, beta-propeller domain containing protein. (Os01t0677000-01)",1,27840205,27842391]
["OS01T0685600-01","NA","NA",1.73091475527961,"OS01G0685600",null,0,2.05866052682091,3.90282026698787,2.93066084935005,"no","OS01G0685600","Os01g0685600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V6M3]","Hypothetical protein. (Os01t0685600-01)",1,28262510,28262980]
["OS01T0686600-01","NA","NA","-Inf","OS01G0686600",null,2.03850783885231,0,0,0,"no","OS01G0686600","Os01g0686600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JKA6]","RNA-processing protein, HAT helix domain containing protein. (Os01t0686600-01)",1,28322583,28325080,"GO:0071013;GO:0006396;GO:0071010;GO:0000974;GO:0071014;GO:0071012;GO:0000349","catalytic step 2 spliceosome;RNA processing;prespliceosome;Prp19 complex;post-mRNA release spliceosomal complex;catalytic step 1 spliceosome;generation of catalytic spliceosome for first transesterification step","A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A spliceosomal complex that is formed by association of the 5' splice site and the branch point sequence with specific snRNPs. The prespliceosome includes many proteins in addition to those found in the bound snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. Prespliceosome complexes are not active for splicing, but are instead an early step in the assembly of a spliceosomal complex. [GOC:ab, GOC:krc, GOC:mah, PMID:17332742, PMID:19239890];A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p. [GOC:krc, PMID:16540691, PMID:19239890];A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:19239890];A spliceosomal complex that is formed by the displacement of the two snRNPs from the precatalytic spliceosome; three snRNPs including U5 remain associated with the mRNA. This complex, sometimes called the activated spliceosome, is the catalytically active form of the spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, PMID:18322460, PMID:19239890];Formation of a catalytic spliceosome complex ready to perform the first splicing reaction. This occurs by an ATP-dependent conformational change of the pre-catalytic spliceosome. [GOC:krc, ISBN:0879695897]"]
["OS01T0693700-00","NA","NA",-0.0754424280096154,"OS01G0693700",null,0,1.02933026341046,0,0.9768869497833491,"no","OS01G0693700","Os01g0693700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V6V9]","Similar to Nitrate reductase [NAD(P)H]. (Os01t0693700-00)",1,28651357,28651761]
["OS01T0705700-01","NA","NA",-0.63475928284904,"OS01G0705700",null,6.11552351655692,2.05866052682091,3.90282026698787,1.36174879864336,"no","OS01G0705700","BHLH protein-like [Source:UniProtKB/TrEMBL;Acc:Q5N8F6]","Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116). (Os01t0705700-01)",1,29271158,29273175,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS01T0715000-01","NA","NA",-1.02846699630073,"OS01G0715000",null,1.0587078857122,3.34984493066345,1.05107366549116,1.11013466439059,"no","OS01G0715000","Os01g0715000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7H2]","Conserved hypothetical protein. (Os01t0715000-01);Conserved hypothetical protein. (Os01t0715000-02)",1,29736321,29739447]
["OS01T0723000-01","NA","NA","-Inf","OS01G0723000",null,2.03850783885231,0,0,0,"no","OS01G0723000","Os01g0723000 protein [Source:UniProtKB/TrEMBL;Acc:Q8W0C4]","Similar to Elongation factor EF-2 (Fragment). (Os01t0723000-01)",1,30143647,30146827,"GO:0006414;GO:0003746;GO:0005525;GO:0003924","translational elongation;translation elongation factor activity;GTP binding;GTPase activity","The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems];Functions in chain elongation during polypeptide synthesis at the ribosome. [ISBN:0198506732];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS01T0729950-00","NA","NA","Inf","OS01G0729950",null,0,0,0,9.71942210922159,"no","OS01G0729950","Os01g0729950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V7S3]","Hypothetical protein. (Os01t0729950-00)",1,30427306,30431384]
["OS01T0740150-00","NA","NA","NA","OS01G0740150",null,0,0,0,0,"no","OS01G0740150","Os01g0740150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KDQ4]","Similar to H0315A08.1 protein. (Os01t0740150-00)",1,30908205,30908948]
["OS01T0742400-01","NA","NA","NA","OS01G0742400",null,0,0,0,0,"no","OS01G0742400","Os01g0742400 protein [Source:UniProtKB/TrEMBL;Acc:Q5JKV7]","Hypothetical conserved gene. (Os01t0742400-01);Protein kinase, core domain containing protein. (Os01t0742400-02)",1,31006026,31009770,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0755500-01","NA","NA","NA","OS01G0755500",null,0,0,0,0,"no","OS01G0755500","Os01g0755500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8B1]","Similar to Transcription factor PCF7 (Fragment). (Os01t0755500-01)",1,31699518,31701126,"GO:0007275;GO:0003677;GO:0005634;GO:0006355;GO:0006351","multicellular organism development;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS01T0762601-00","NA","NA","NA","OS01G0762601",null,0,0,0,0,"no","OS01G0762601","Os01g0762601 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8H4]","Hypothetical protein. (Os01t0762601-00)",1,32081996,32082337]
["OS01T0775200-02","NA","NA",7.34764544514187,"OS01G0775200",null,0.427619532377689,0.000502285443378366,0.027545871820860098,69.7039589179078,"no","OS01G0775200","Os01g0775200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V8R6]","Conserved hypothetical protein. (Os01t0775200-01);Conserved hypothetical protein. (Os01t0775200-02);Conserved hypothetical protein. (Os01t0775200-03)",1,32768618,32773224]
["OS01T0780400-01","NA","NA",-1.06860041717019,"OS01G0780400",null,3.06729375575936,3.08799079023137,2.9347246190417797,0,"no","OS01G0780400","Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:Q5ZCG1]","Hypothetical gene. (Os01t0780400-01);WD40 repeat-like domain containing protein. (Os01t0780400-02)",1,33050684,33058490,"GO:0008352;GO:0051013;GO:0008017;GO:0005856;GO:0005874;GO:0005737;","katanin complex;microtubule severing;microtubule binding;cytoskeleton;microtubule;cytoplasm;","A complex possessing an activity that couples ATP hydrolysis to the severing of microtubules; usually a heterodimer comprising a catalytic subunit (often 60kDa) and a regulatory subunit (often 80 kDa). [PMID:10910766];The process in which a microtubule is broken down into smaller segments. [GOC:ai, PMID:14657234];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. [GOC:mah, ISBN:0198547684, PMID:16959967];Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. [ISBN:0879693568];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];"]
["OS01T0793550-00","NA","NA","Inf","OS01G0793550",null,0,0,0,1.9718623952733298,"no","OS01G0793550","Os01g0793550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V953]","Hypothetical gene. (Os01t0793550-00)",1,33613903,33614397]
["OS01T0808950-00","NA","NA","NA","OS01G0808950",null,0,0,0,0,"no","OS01G0808950","Os01g0808950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V9J3]","Hypothetical protein. (Os01t0808950-00)",1,34357031,34357324]
["OS01T0820700-00","NA","NA","Inf","OS01G0820700",null,0,0,0,1.9537738995667,"no","OS01G0820700","Os01g0820700 protein [Source:UniProtKB/TrEMBL;Acc:Q5QMC1]","DNA-binding WRKY domain containing protein. (Os01t0820700-00)",1,34996792,35003226,"GO:0003700;GO:0003677;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0832450-00","NA","NA","NA","OS01G0832450",null,0,0,0,0,"no","OS01G0832450",null,"Hypothetical protein. (Os01t0832450-00)",1,35619952,35620559]
["OS01T0844700-00","NA","NA","NA","OS01G0844700",null,0,0,0,0,"no","OS01G0844700","Os01g0844700 protein [Source:UniProtKB/TrEMBL;Acc:Q8S250]","Similar to protein binding protein. (Os01t0844700-00)",1,36274026,36274733,"GO:0000209;GO:0042787;GO:0043161;GO:0061630","protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity","Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777]"]
["OS01T0856850-00","NA","NA","-Inf","OS01G0856850",null,0,1.02933026341046,0,0,"no","OS01G0856850","Os01g0856850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAJ9]","Similar to ribosomal protein S7. (Os01t0856850-00)",1,37019957,37020241,"GO:0006412","translation","The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]"]
["OS01T0858200-01","NA","NA",-0.0671604239348346,"OS01G0858200",null,4.07701567770462,2.05866052682091,3.90282026698787,1.9537738995667,"no","OS01G0858200","Os01g0858200 protein [Source:UniProtKB/TrEMBL;Acc:Q0JHK5]","Similar to ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding. (Os01t0858200-01)",1,37095403,37096978,"GO:0005730;GO:0003723;GO:0004004;GO:0005737;GO:0004386;GO:0006396","nucleolus;RNA binding;ATP-dependent RNA helicase activity;cytoplasm;helicase activity;RNA processing","A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix. [EC:3.6.1.3, GOC:jl];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah]"]
["OS01T0870350-00","NA","NA","NA","OS01G0870350",null,0,0,0,0,"no","OS01G0870350","Os01g0870350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAV1]","Hypothetical protein. (Os01t0870350-00)",1,37735184,37737641,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0874800-01","NA","NA","NA","OS01G0874800",null,0,0,0,0,"no","OS01G0874800","Os01g0874800 protein [Source:UniProtKB/TrEMBL;Acc:Q5N8X0]","Similar to DNA polymerase I. (Os01t0874800-01);Similar to DNA polymerase I. (Os01t0874800-02);5'-3' exonuclease domain containing protein. (Os01t0874800-03);Similar to DNA polymerase I. (Os01t0874800-04)",1,37955091,37959001,"GO:0003677;GO:0003824;GO:0006261;GO:0005737","DNA binding;catalytic activity;DNA-dependent DNA replication;cytoplasm","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. [GOC:mah, ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS01T0883800-02","NA","NA",3.85962275466271,"OS01G0883800","20OX2",1.03839585019701,0,3.39147966731918,11.682404197220901,"no","OS01G0883800","Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0JH50]","Similar to GA C20oxidase2. (Os01t0883800-01);GA 20-oxidase2, GA metabolism (Os01t0883800-02)",1,38382385,38385469,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS01T0891300-02","NA","NA","NA","OS01G0891300",null,0,0,0,0,"no","OS01G0891300","Os01g0891300 protein [Source:UniProtKB/TrEMBL;Acc:Q8S0M7]","Similar to Allyl alcohol dehydrogenase. (Os01t0891300-01);Similar to Allyl alcohol dehydrogenase. (Os01t0891300-02)",1,38752615,38754941,"GO:0016491;GO:0055114;GO:0016020;GO:0016021","oxidoreductase activity;oxidation-reduction process;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0894000-02","NA","NA","NA","OS01G0894000",null,0,0,0,0,"no","OS01G0894000","Calcineurin-related phosphoesterase-like [Source:UniProtKB/TrEMBL;Acc:Q5JLV7]","Metallophosphoesterase domain containing protein. (Os01t0894000-01);Similar to predicted protein. (Os01t0894000-02)",1,38864030,38867821,"GO:0016787;GO:0016020;GO:0016021","hydrolase activity;membrane;integral component of membrane","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0905800-02","NA","NA","NA","OS01G0905800","FBA3",0,0,0,0,"no","OS01G0905800","Fructose-bisphosphate aldolase 3, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q5N725]","Aldolase C-1. (Os01t0905800-01);Aldolase C-1. (Os01t0905800-02);Aldolase C-1. (Os01t0905800-03)",1,39433408,39435696,"GO:0005829;GO:0004332;GO:0006094;GO:0006096;GO:0005737;GO:0016829;GO:0003824","cytosol;fructose-bisphosphate aldolase activity;gluconeogenesis;glycolytic process;cytoplasm;lyase activity;catalytic activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate. [EC:4.1.2.13];The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY];The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules. [GOC:bf, GOC:dph, ISBN:0201090910, ISBN:0716720094, ISBN:0879010479, Wikipedia:Glycolysis];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0919150-00","NA","NA","NA","OS01G0919150",null,0,0,0,0,"no","OS01G0919150","Os01g0919150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCA0]","Hypothetical protein. (Os01t0919150-00)",1,40093788,40096767]
["OS01T0932550-00","NA","NA",-0.916514305734741,"OS01G0932550",null,5.27439318943591,4.34010277149377,2.08275341193742,3.01088631230172,"no","OS01G0932550","Os01g0932550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VCD9]","Similar to Mitochondrial import inner membrane translocase subunit Tim13. (Os01t0932550-00)",1,40909710,40914137,"GO:0015031;GO:0005739;GO:0046872;GO:0006810","protein transport;mitochondrion;metal ion binding;transport","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS01T0941800-02","NA","NA","-Inf","OS01G0941800",null,6.58952528761865,0,0,0,"no","OS01G0941800","Probable inactive purple acid phosphatase 16 [Source:Projected from Arabidopsis thaliana (AT3G10150) UniProtKB/Swiss-Prot;Acc:Q9SR79]","Metallophosphoesterase domain containing protein. (Os01t0941800-01);Similar to predicted protein. (Os01t0941800-02)",1,41384339,41386372,"GO:0016787;GO:0016020","hydrolase activity;membrane","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0952000-02","NA","NA","NA","OS01G0952000","GER8",0,0,0,0,"no","OS01G0952000","Germin-like protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q942A8]","Similar to Germin-like protein 1-3. (Os01t0952000-01);RmlC-like jelly roll fold domain containing protein. (Os01t0952000-02)",1,41914683,41915921,"GO:0005618;GO:0009506;GO:0045735;GO:0030145;GO:0048046;GO:0046872;GO:0005576;GO:0010497;GO:2000280","cell wall;plasmodesma;nutrient reservoir activity;manganese ion binding;apoplast;metal ion binding;extracellular region;plasmodesmata-mediated intercellular transport;regulation of root development","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];Functions in the storage of nutritious substrates. [GOC:ai];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];The movement of substances between cells via plasmodesmata. Plasmodesmata is a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [PMID:17601829];Any process that modulates the frequency, rate or extent of root development. [GOC:obol]"]
["OS01T0953100-01","NA","NA","NA","OS01G0953100",null,0,0,0,0,"no","OS01G0953100","Os01g0953100 protein [Source:UniProtKB/TrEMBL;Acc:Q5JL05]","Protein of unknown function DUF594 family protein. (Os01t0953100-01);Protein of unknown function DUF594 family protein. (Os01t0953100-02)",1,41982181,41985044,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0966000-01","NA","NA","NA","OS01G0966000",null,0,0,0,0,"no","OS01G0966000","5-oxoprolinase [Source:Projected from Arabidopsis thaliana (AT5G37830) UniProtKB/Swiss-Prot;Acc:Q9FIZ7]","Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-01);Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-02);Similar to predicted protein. (Os01t0966000-03);Similar to OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase. (Os01t0966000-04)",1,42590881,42598002,"GO:0003824;GO:0005829;GO:0006749;GO:0017168;GO:0016787;GO:0006751;GO:0009506","catalytic activity;cytosol;glutathione metabolic process;5-oxoprolinase (ATP-hydrolyzing) activity;hydrolase activity;glutathione catabolic process;plasmodesma","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];Catalysis of the reaction: 5-oxo-L-proline + ATP + 2 H(2)O = L-glutamate + ADP + 2 H(+) + phosphate. [EC:3.5.2.9, RHEA:10351];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, ISBN:0198506732];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS02T0101500-02","NA","NA","NA","OS02G0101500",null,0,0,0,0,"no","OS02G0101500","Os02g0101500 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU90]","Peroxisomal hydroxypyruvate reductase, NADH-dependent HPR, Photorespiratory metabolism (Os02t0101500-01);Similar to NADH-dependent hydroxypyruvate reductase (EC 1.1.1.29) (Fragment). (Os02t0101500-02)",2,78483,82952,"GO:0005829;GO:0051287;GO:0016616;GO:0055114;GO:0016491;GO:0008152;GO:0016618;GO:0030267","cytosol;NAD binding;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;oxidation-reduction process;oxidoreductase activity;metabolic process;hydroxypyruvate reductase activity;glyoxylate reductase (NADP) activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: D-glycerate + NADP+ = hydroxypyruvate + NADPH + H+. [EC:1.1.1.81];Catalysis of the reaction: glycolate + NADP+ = glyoxylate + NADPH + H+. [EC:1.1.1.79]"]
["OS02T0110101-00","NA","NA","NA","OS02G0110101",null,0,0,0,0,"no","OS02G0110101","Os02g0110101 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VDS7]","Hypothetical gene. (Os02t0110101-00)",2,554511,556079]
["OS02T0119000-00","NA","NA","-Inf","OS02G0119000",null,1.2705611588930399,0,0,0,"no","OS02G0119000","Os02g0119000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VDZ4]","Similar to Sialyltransferase-like protein. (Os02t0119000-00)",2,1003715,1005369,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS02T0129000-00","NA","NA","Inf","OS02G0129000",null,0,0,0,0.420388630478406,"no","OS02G0129000","Os02g0129000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VE85]","Hypothetical conserved gene. (Os02t0129000-00)",2,1506329,1511906,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0130200-01","NA","NA",0.12304984182796601,"OS02G0130200",null,3.05776175827846,4.11732105364182,0.9757050667469671,6.83820864848344,"no","OS02G0130200","Os02g0130200 protein [Source:UniProtKB/TrEMBL;Acc:Q0E491]","Pectin lyase fold/virulence factor domain containing protein. (Os02t0130200-01)",2,1570152,1574900,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS02T0147700-02","NA","NA","NA","OS02G0147700",null,0,0,0,0,"no","OS02G0147700","Os02g0147700 protein [Source:UniProtKB/TrEMBL;Acc:Q0E3Y8]","Conserved hypothetical protein. (Os02t0147700-01);Hypothetical conserved gene. (Os02t0147700-02);Hypothetical conserved gene. (Os02t0147700-03)",2,2614247,2618999,"GO:0009330;GO:0042023;GO:0003690;","DNA topoisomerase complex (ATP-hydrolyzing);DNA endoreduplication;double-stranded DNA binding;","Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity. [GOC:mah];Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl, GOC:vw];Interacting selectively and non-covalently with double-stranded DNA. [GOC:elh, GOC:vw];"]
["OS02T0158350-00","NA","NA","NA","OS02G0158350",null,0,0,0,0,"no","OS02G0158350",null,"Hypothetical protein. (Os02t0158350-00)",2,3179578,3182639]
["OS02T0168200-01","NA","NA",-0.0754424280096154,"OS02G0168200",null,0,1.02933026341046,0,0.9768869497833491,"no","OS02G0168200","Os02g0168200 protein [Source:UniProtKB/TrEMBL;Acc:Q6H4V0]","Similar to Transfactor-like protein. (Os02t0168200-01)",2,3682192,3684126,"GO:0016701;GO:0003868;GO:0009072;GO:0055114;GO:0005634;GO:0006355;GO:0006351;GO:0003677","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;4-hydroxyphenylpyruvate dioxygenase activity;aromatic amino acid family metabolic process;oxidation-reduction process;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor. [GOC:mah];Catalysis of the reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2. [EC:1.13.11.27];The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS02T0175200-00","NA","NA","Inf","OS02G0175200",null,0,0,0,0.9768869497833491,"no","OS02G0175200","Os02g0175200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFJ4]","Domain of unknown function DUF632 domain containing protein. (Os02t0175200-00)",2,4112948,4113895,"GO:0003723","RNA binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS02T0184650-00","NA","NA","NA","OS02G0184650",null,0,0,0,0,"no","OS02G0184650",null,"Hypothetical protein. (Os02t0184650-00)",2,4721069,4722673]
["OS02T0185766-00","NA","NA","NA","OS02G0185766",null,0,0,0,0,"no","OS02G0185766","Os02g0185766 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VFT2]","Hypothetical protein. (Os02t0185766-00)",2,4785252,4787028]
["OS02T0193350-01","NA","NA",-1.13121470602099,"OS02G0193350",null,1.12437163094165,1.04558968250454,0,0.9906549939227691,"no","OS02G0193350","Os02g0193350 protein [Source:UniProtKB/TrEMBL;Acc:B9F3T5]","Hypothetical conserved gene. (Os02t0193350-01)",2,5197694,5200762]
["OS02T0202400-01","NA","NA",0.6757156107280341,"OS02G0202400",null,3.05776175827846,0,0,4.88443474891674,"no","OS02G0202400","Os02g0202400 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z782]","ADP-glucose transporter, Plastidic translocator, Starch synthesis during seed development (Os02t0202400-01)",2,5736608,5738792,"GO:0022857;GO:0006839;GO:0016021;GO:0005743;GO:0006810;GO:0055085;GO:0016020","transmembrane transporter activity;mitochondrial transport;integral component of membrane;mitochondrial inner membrane;transport;transmembrane transport;membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];Transport of substances into, out of or within a mitochondrion. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0213700-00","NA","NA",0.0274097108196487,"OS02G0213700",null,1.6298115446788501,0,0,1.6610722957952802,"no","OS02G0213700","Os02g0213700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VGF1]","Similar to H0311C03.5 protein. (Os02t0213700-00)",2,6376511,6377562]
["OS02T0216250-00","NA","NA","NA","OS02G0216250",null,0,0,0,0,"no","OS02G0216250","Os02g0216250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VGE2]","Similar to calmodulin. (Os02t0216250-00)",2,6505111,6505588,"GO:0005509","calcium ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai]"]
["OS02T0233200-00","NA","NA","-Inf","OS02G0233200","BZR4",2.05432140267024,1.03285134203469,0,0,"no","OS02G0233200","Protein BZR1 homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6EUF1]","Similar to Brassinazole-resistant 1 protein. (Os02t0233200-00)",2,7548547,7551644,"GO:0009742;GO:0040008;GO:0006355;GO:0003700;GO:0003677;GO:0006351","brassinosteroid mediated signaling pathway;regulation of growth;regulation of transcription, DNA-templated;transcription factor activity, sequence-specific DNA binding;DNA binding;transcription, DNA-templated","A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0237000-00","NA","NA","Inf","OS02G0237000",null,0,0,0,0.9768869497833491,"no","OS02G0237000","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q6EQJ7]","Similar to peroxidase 52. (Os02t0237000-00)",2,7770038,7771054,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS02T0249500-01","NA","NA","NA","OS02G0249500",null,0,0,0,0,"no","OS02G0249500","Os02g0249500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VH21]","Conserved hypothetical protein. (Os02t0249500-01)",2,8433458,8436694,"GO:0045735","nutrient reservoir activity","Functions in the storage of nutritious substrates. [GOC:ai]"]
["OS02T0257500-00","NA","NA","NA","OS02G0257500",null,0,0,0,0,"no","OS02G0257500","Basic helix-loop-helix-like [Source:UniProtKB/TrEMBL;Acc:Q6ETQ5]","Similar to DNA binding protein. (Os02t0257500-00)",2,8879339,8882660,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS02T0272100-00","NA","NA","NA","OS02G0272100",null,0,0,0,0,"no","OS02G0272100","Os02g0272100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VHM0]","F-box domain, cyclin-like domain containing protein. (Os02t0272100-00)",2,9867024,9868223]
["OS02T0288862-00","NA","NA","Inf","OS02G0288862",null,0,0,0.8317243600045061,0,"no","OS02G0288862","Os02g0288862 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF43]","Hypothetical protein. (Os02t0288862-00)",2,10922179,10923451]
["OS02T0293800-01","NA","NA",0.9155623602314251,"OS02G0293800",null,3.18119134613046,0,6.00069461925022,0,"no","OS02G0293800","Os02g0293800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KF47]","Conserved hypothetical protein. (Os02t0293800-01);Hypothetical conserved gene. (Os02t0293800-02)",2,11180090,11182663]
["OS02T0308800-01","NA","NA","NA","OS02G0308800",null,0,0,0,0,"no","OS02G0308800","Os02g0308800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z0V9]","FAS1 domain domain containing protein. (Os02t0308800-01);Conserved hypothetical protein. (Os02t0308800-02)",2,12127913,12129233,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0321900-01","NA","NA","NA","OS02G0321900",null,0,0,0,0,"no","OS02G0321900","Ribosomal protein [Source:UniProtKB/TrEMBL;Acc:Q6ER67]","Similar to Ribosomal protein L1. (Os02t0321900-01);Similar to 60S ribosomal protein L10a-1. (Os02t0321900-02)",2,12869461,12872315,"GO:0006412;GO:0000470;GO:0022625;GO:0003723;GO:0015934;GO:0030529;GO:0005840;GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055;GO:0003735;","translation;maturation of LSU-rRNA;cytosolic large ribosomal subunit;RNA binding;large ribosomal subunit;intracellular ribonucleoprotein complex;ribosome;cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity;structural constituent of ribosome;","The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule. [GOC:curators];The large subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). [ISBN:0198506732];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];"]
["OS02T0453400-00","NA","NA","NA","OS02G0453400",null,0,0,0,0,"no","OS02G0453400","Os02g0453400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VIM9]","Similar to H0818E04.10 protein. (Os02t0453400-00)",2,14984016,14984852,"GO:0009832;GO:0008417;GO:0005794;GO:0009969;GO:0042546;GO:0036065;GO:0008107;GO:0016757;GO:0016020;GO:0016740","plant-type cell wall biogenesis;fucosyltransferase activity;Golgi apparatus;xyloglucan biosynthetic process;cell wall biogenesis;fucosylation;galactoside 2-alpha-L-fucosyltransferase activity;transferase activity, transferring glycosyl groups;membrane;transferase activity","A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu];Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid. [GOC:ai];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:sm];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:0198506732];The covalent attachment of a fucosyl group to an acceptor molecule. [CHEBI:62688, GOC:sart, PMID:19948734];Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R. [EC:2.4.1.69];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0461700-00","NA","NA",1.84331581419992,"OS02G0461700",null,2.89979631082422,0,10.4054494695759,0,"no","OS02G0461700","Os02g0461700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VIP8]","Protein of unknown function DUF688 domain containing protein. (Os02t0461700-00)",2,15467385,15467780]
["OS02T0478300-00","NA","NA","NA","OS02G0478300",null,0,0,0,0,"no","OS02G0478300","Os02g0478300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VIY6]","Conserved hypothetical protein. (Os02t0478300-00)",2,16414631,16415662]
["OS02T0489600-01","NA","NA",2.25540336638121,"OS02G0489600",null,1.03286219469026,1.02933026341046,7.8667636209437,1.97954082189741,"no","OS02G0489600","Os02g0489600 protein [Source:UniProtKB/TrEMBL;Acc:Q0E156]","Conserved hypothetical protein. (Os02t0489600-01)",2,17055099,17057077,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0492000-01","NA","NA","NA","OS02G0492000",null,0,0,0,0,"no","OS02G0492000","Os02g0492000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJ95]","Ankyrin repeat containing protein. (Os02t0492000-01);Similar to Ankyrin-like protein-like protein. (Os02t0492000-02)",2,17196142,17204631]
["OS02T0507400-01","NA","NA",-3.48339950927884,"OS02G0507400",null,2.8701649576528096E-7,6.48655735185521E-6,4.2334191300570597E-7,1.82291923204669e-07,"no","OS02G0507400","Os02g0507400 protein [Source:UniProtKB/TrEMBL;Acc:Q6K2H3]","Protein of unknown function DUF493 family protein. (Os02t0507400-01);Protein of unknown function DUF493 family protein. (Os02t0507400-02);Similar to OSIGBa0148P16.4 protein. (Os02t0507400-03)",2,18110446,18113752]
["OS02T0519100-01","NA","NA","Inf","OS02G0519100","HAK20",0,0,0,1.28609770866164,"no","OS02G0519100","Potassium transporter 20 [Source:UniProtKB/Swiss-Prot;Acc:Q6H4L9]","Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2. (Os02t0519100-01)",2,18872288,18878500,"GO:0005886;GO:0016020;GO:0006810;GO:0071805;GO:0006813;GO:0006811;GO:0015079;GO:0016021","plasma membrane;membrane;transport;potassium ion transmembrane transport;potassium ion transport;ion transport;potassium ion transmembrane transporter activity;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Enables the transfer of potassium ions (K+) from one side of a membrane to the other. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0535300-00","NA","NA","NA","OS02G0535300",null,0,0,0,0,"no","OS02G0535300","Os02g0535300 protein [Source:UniProtKB/TrEMBL;Acc:Q6EPW8]","Hypothetical conserved gene. (Os02t0535300-00)",2,19723841,19724741]
["OS02T0537450-00","NA","NA","NA","OS02G0537450",null,0,0,0,0,"no","OS02G0537450","Os02g0537450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VK07]","Hypothetical protein. (Os02t0537450-00)",2,19862862,19864098]
["OS02T0548100-00","NA","NA","NA","OS02G0548100",null,0,0,0,0,"no","OS02G0548100","Os02g0548100 protein [Source:UniProtKB/TrEMBL;Acc:Q6YYG5]","Helix-loop-helix DNA-binding domain containing protein. (Os02t0548100-00)",2,20562601,20565664,"GO:0005634;GO:0046983;GO:0016020;GO:0016021","nucleus;protein dimerization activity;membrane;integral component of membrane","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0561000-01","NA","NA","Inf","OS02G0561000","EL5.4",0,0,0,0.325628983261116,"no","OS02G0561000","E3 ubiquitin-protein ligase EL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRB7]","RING-H2 type E3 ubiquitin ligase, Root development, Maintenance of cell viability after the initiation of root primordial formation, Defense response (Os02t0561000-01)",2,21277161,21278421,"GO:0004842;GO:0000209;GO:0042787;GO:0043161;GO:0061630;GO:0051301;GO:0005886;GO:0016567;GO:0046872;GO:0048364;GO:0016020;GO:0016021;GO:0016740","ubiquitin-protein transferase activity;protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;cell division;plasma membrane;protein ubiquitination;metal ion binding;root development;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0572000-01","NA","NA","Inf","OS02G0572000",null,0,0,0,2.06077618871961,"no","OS02G0572000","Os02g0572000 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z5I6]","Hypothetical protein. (Os02t0572000-01)",2,21904824,21906343]
["OS02T0582600-01","NA","NA","-Inf","OS02G0582600",null,11.2332949701034,0,0,0,"no","OS02G0582600","Os02g0582600 protein [Source:UniProtKB/TrEMBL;Acc:Q6EPT4]","Heavy metal transport/detoxification protein domain containing protein. (Os02t0582600-01);Heavy metal transport/detoxification protein domain containing protein. (Os02t0582600-02)",2,22468206,22469788,"GO:0046916;GO:0030001;GO:0046914;GO:0005737","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS02T0592000-00","NA","NA","NA","OS02G0592000",null,0,0,0,0,"no","OS02G0592000","Os02g0592000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KFL0]","Similar to OSIGBa0106G07.8 protein. (Os02t0592000-00)",2,22900707,22910523,"GO:0055114;GO:0046872;GO:0016491","oxidation-reduction process;metal ion binding;oxidoreductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS02T0603000-00","NA","NA","NA","OS02G0603000",null,0,0,0,0,"no","OS02G0603000","Os02g0603000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DZR2]","Protein kinase, core domain containing protein. (Os02t0603000-00)",2,23609300,23610643,"GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016740","intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;transferase activity","The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0604800-00","NA","NA","NA","OS02G0604800",null,0,0,0,0,"no","OS02G0604800","Os02g0604800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLE5]","Putative cyclin-F1-3. (Os02t0604800-00)",2,23703991,23707335,"GO:0051301;GO:0007049;GO:0005634","cell division;cell cycle;nucleus","The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS02T0614700-00","NA","NA","NA","OS02G0614700",null,0,0,0,0,"no","OS02G0614700","Os02g0614700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLL7]","B30.2/SPRY domain domain containing protein. (Os02t0614700-00)",2,24283189,24283680]
["OS02T0620000-00","NA","NA",0.937003520633032,"OS02G0620000",null,1.01925391942615,0,1.95141013349393,0,"no","OS02G0620000","Os02g0620000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VLT3]","Conserved hypothetical protein. (Os02t0620000-00)",2,24665979,24666819]
["OS02T0632100-00","NA","NA","NA","OS02G0632100",null,0,0,0,0,"no","OS02G0632100","Os02g0632100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VM78]","Similar to WAK111 - OsWAK receptor-like protein kinase. (Os02t0632100-00)",2,25319350,25321441,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0649300-01","NA","NA",1.7387418942053299,"OS02G0649300","HOX24",1.01925391942615,1.02933026341046,0.9757050667469671,5.86132169870009,"no","OS02G0649300","Homeobox-leucine zipper protein HOX24 [Source:UniProtKB/Swiss-Prot;Acc:Q6H6S3]","HD-ZIP I protein, Transcription activator, Stress response, Panicle development (Os02t0649300-01)",2,26143311,26144729,"GO:0003700;GO:0003677;GO:0043565;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0649400-00","NA","NA","-Inf","OS02G0649400",null,1.01925391942615,0,0,0,"no","OS02G0649400","Os02g0649400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VMB0]","Similar to predicted protein. (Os02t0649400-00)",2,26150920,26151389]
["OS02T0665300-02","NA","NA","NA","OS02G0665300",null,0,0,0,0,"no","OS02G0665300","Os02g0665300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESH8]","Peptidase S8, subtilisin-related domain containing protein. (Os02t0665300-01);Peptidase S8, subtilisin-related domain containing protein. (Os02t0665300-02)",2,27018440,27021717,"GO:0004252;GO:0008236;GO:0006508;GO:0016787;GO:0008233","serine-type endopeptidase activity;serine-type peptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS02T0677300-02","NA","NA",0.7412964355753421,"OS02G0677300","DREB1G",3.05776175827846,1.02933026341046,4.87852533373483,1.9537738995667,"no","OS02G0677300","Dehydration-responsive element-binding protein 1G [Source:UniProtKB/Swiss-Prot;Acc:Q6EP77]","Similar to CRT/DRE binding factor 1. (Os02t0677300-02)",2,27652935,27654206,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS02T0696650-00","NA","NA",2.18395515119671,"OS02G0696650",null,0,1.57146489049654,1.4905844843946001,5.65011394729261,"no","OS02G0696650","Os02g0696650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VNB0]","Hypothetical gene. (Os02t0696650-00)",2,28630069,28630932]
["OS02T0709701-00","NA","NA","NA","OS02G0709701",null,0,0,0,0,"no","OS02G0709701","Os02g0709701 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VNU1]","Hypothetical protein. (Os02t0709701-00)",2,29364402,29365169]
["OS02T0723400-01","NA","NA",-0.25859451331376604,"OS02G0723400","IAA8",1.29391606142096,0,1.08158685034422,0,"no","OS02G0723400","Auxin-responsive protein IAA8 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z5M0]","Similar to Isoform 2 of Auxin-responsive protein IAA8. (Os02t0723400-01);AUX/IAA protein family protein. (Os02t0723400-02)",2,30064358,30066172,"GO:0009733;GO:0005634;GO:0009734;GO:0006355;GO:0006351;","response to auxin;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated;","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];"]
["OS02T0725700-01","NA","NA","NA","OS02G0725700",null,0,0,0,0,"no","OS02G0725700","HAP3 subunit of HAP complex [Source:UniProtKB/TrEMBL;Acc:Q6ZFM9]","Histone-fold domain containing protein. (Os02t0725700-01)",2,30164300,30165377,"GO:0046982;GO:0043565;GO:0005634;GO:0006355","protein heterodimerization activity;sequence-specific DNA binding;nucleus;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS02T0733166-00","NA","NA",-0.0845941907630072,"OS02G0733166",null,0,1.13088654668615,1.06648229194186,0,"no","OS02G0733166","Os02g0733166 protein [Source:UniProtKB/TrEMBL;Acc:B9F2K4]","Hypothetical conserved gene. (Os02t0733166-00)",2,30567233,30567808,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0743800-01","NA","NA","-Inf","OS02G0743800",null,2.20167895654064,0,0,0,"no","OS02G0743800","Os02g0743800 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z2U7]","Hypothetical conserved gene. (Os02t0743800-01);CS domain containing protein. (Os02t0743800-02)",2,31194269,31197703,"GO:0006457;GO:0007275;GO:0051082;GO:0005737;","protein folding;multicellular organism development;unfolded protein binding;cytoplasm;","The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];"]
["OS02T0750950-00","NA","NA","NA","OS02G0750950",null,0,0,0,0,"no","OS02G0750950","Os02g0750950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPI3]","Hypothetical gene. (Os02t0750950-00)",2,31564646,31565269]
["OS02T0776800-01","NA","NA","NA","OS02G0776800","RPA1A",0,0,0,0,"no","OS02G0776800","Replication protein A 70 kDa DNA-binding subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q6YZ49]","Replication protein A 70 kDa, Meiotic and somatic DNA repair (Os02t0776800-01);Similar to Replication protein A 70kDa. (Os02t0776800-02);Similar to Replication protein A 70kDa. (Os02t0776800-03)",2,32832832,32836481,"GO:0006310;GO:0006260;GO:0006281;GO:0005634;GO:0003676;GO:0003677;GO:0005515;GO:0009555;GO:0006974;GO:0046872;GO:0007140;GO:0007131;GO:0007141;GO:0048232;GO:0051026;GO:0000790","DNA recombination;DNA replication;DNA repair;nucleus;nucleic acid binding;DNA binding;protein binding;pollen development;cellular response to DNA damage stimulus;metal ion binding;male meiotic nuclear division;reciprocal meiotic recombination;male meiosis I;male gamete generation;chiasma assembly;nuclear chromatin","Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:0198506732];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the male germline. [GOC:dph, GOC:mah, GOC:vw];The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779];A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline. [GOC:dph, GOC:mah];Generation of the male gamete; specialised haploid cells produced by meiosis and along with a female gamete takes part in sexual reproduction. [GOC:dph, GOC:jid];The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids. [http://www.onelook.com];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus. [GOC:elh, PMID:20404130]"]
["OS02T0785600-00","NA","NA","Inf","OS02G0785600",null,0,0,0,0.9768858349345461,"no","OS02G0785600","Os02g0785600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KG79]","Hypothetical conserved gene. (Os02t0785600-00)",2,33349102,33353623]
["OS02T0788700-00","NA","NA","NA","OS02G0788700",null,0,0,0,0,"no","OS02G0788700","Os02g0788700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KG83]","Hypothetical protein. (Os02t0788700-00)",2,33505386,33505754]
["OS02T0798400-01","NA","NA",-12.6302974629415,"OS02G0798400",null,8.4148513265858106E-4,24.7039263218509,2.2058664328596803E-3,1.6907027003857601E-3,"no","OS02G0798400","Uncharacterized protein Os02g0798501 [Source:UniProtKB/Swiss-Prot;Acc:B7F6L8]","Similar to Uncharacterized protein OsI_009113. (Os02t0798400-01)",2,33982930,33983620]
["OS02T0811200-00","NA","NA","NA","OS02G0811200",null,0,0,0,0,"no","OS02G0811200","Os02g0811200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K5W7]","Protein kinase, core domain containing protein. (Os02t0811200-00)",2,34720866,34723416,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0819700-01","NA","NA","-Inf","OS02G0819700",null,65.7758529336421,0,0,0,"no","OS02G0819700","Os02g0819700 protein [Source:UniProtKB/TrEMBL;Acc:Q6K719]","Zinc finger, Zim17-type family protein. (Os02t0819700-01);Zinc finger, Zim17-type family protein. (Os02t0819700-02)",2,35199419,35200921,"GO:0006457;GO:0051087;GO:0030150;GO:0005739;GO:0046872;GO:0008270;GO:0050821","protein folding;chaperone binding;protein import into mitochondrial matrix;mitochondrion;metal ion binding;zinc ion binding;protein stabilization","The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. [ISBN:0716731363];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation. [GOC:ai]"]
["OS02T0826700-00","NA","NA","Inf","OS02G0826700",null,0,0,0.9757050667469671,0,"no","OS02G0826700","Os02g0826700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRI1]","F-box domain, cyclin-like domain containing protein. (Os02t0826700-00)",2,35535173,35536130]
["OS02T0831300-01","NA","NA","NA","OS02G0831300",null,0,0,0,0,"no","OS02G0831300","Os02g0831300 protein [Source:UniProtKB/TrEMBL;Acc:Q6K975]","Armadillo-type fold domain containing protein. (Os02t0831300-01);Similar to beta-catenin-like protein 1. (Os02t0831300-02)",2,35747235,35751292,"GO:0005681","spliceosomal complex","Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. [GOC:editors, GOC:mah, ISBN:0198547684, PMID:19239890]"]
["OS03T0103033-00","NA","NA","Inf","OS03G0103033",null,0,0,1.18141578937116,0,"no","OS03G0103033","Os03g0103033 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VRV3]","Hypothetical protein. (Os03t0103033-00)",3,202714,205446]
["OS03T0114100-01","NA","NA",-0.0612499834381722,"OS03G0114100",null,1.01925391942615,0,0,0.9768869497833491,"no","OS03G0114100","Os03g0114100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VS64]","Conserved hypothetical protein. (Os03t0114100-01)",3,793552,794489]
["OS03T0124100-01","NA","NA","Inf","OS03G0124100",null,0,0,1.95141013349393,0,"no","OS03G0124100","Fringe protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10SF6]","Protein of unknown function DUF604 domain containing protein. (Os03t0124100-01)",3,1402828,1404996,"GO:0009229;GO:0004788;GO:0003677;GO:0005634;GO:0006355;GO:0005524;GO:0016020;GO:0016021","thiamine diphosphate biosynthetic process;thiamine diphosphokinase activity;DNA binding;nucleus;regulation of transcription, DNA-templated;ATP binding;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle. [CHEBI:45931, GOC:jl, ISBN:0140512713];Catalysis of the reaction: ATP + thiamine = AMP + thiamine diphosphate. [EC:2.7.6.2];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0137600-01","NA","NA","-Inf","OS03G0137600",null,18.0506581214503,0,0,0,"no","OS03G0137600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10S26]","Conserved hypothetical protein. (Os03t0137600-01);Conserved hypothetical protein. (Os03t0137600-02)",3,2073420,2074942,"GO:0016020;GO:0016021;GO:0005886","membrane;integral component of membrane;plasma membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS03T0145775-01","NA","NA",0.0920832159603526,"OS03G0145775",null,0,3.08799079023137,3.29151475686134,0,"no","OS03G0145775","Os03g0145775 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VSZ5]","Conserved hypothetical protein. (Os03t0145775-01)",3,2542773,2543266,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0160200-01","NA","NA","NA","OS03G0160200",null,0,0,0,0,"no","OS03G0160200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10RG3]","Conserved hypothetical protein. (Os03t0160200-01);Conserved hypothetical protein. (Os03t0160200-02)",3,3208862,3211539]
["OS03T0162800-01","NA","NA",-0.044501292790006,"OS03G0162800",null,3.13456638244638,1.03981247708704,3.04590653524664,1.0016753014836,"no","OS03G0162800","Os03g0162800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DUX1]","Similar to Beta-ketoacyl-CoA-synthase. (Os03t0162800-01)",3,3405791,3407198,"GO:0016746;GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016740","transferase activity, transferring acyl groups;fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0170800-00","NA","NA",-1.06124998343817,"OS03G0170800",null,2.03850783885231,0,0,0.9768869497833491,"no","OS03G0170800","Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q8S7X1]","Hypothetical conserved gene. (Os03t0170800-00)",3,3794582,3795566,"GO:0005623;GO:0055114;GO:0045454;GO:0015035;GO:0009055","cell;oxidation-reduction process;cell redox homeostasis;protein disulfide oxidoreductase activity;electron carrier activity","The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS03T0182000-00","NA","NA",-0.652268502681081,"OS03G0182000",null,4.07701567770462,2.05866052682091,2.9271152002409,0.9768869497833491,"no","OS03G0182000","Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A0P0VTY6]","Similar to flavin-dependent monooxygenase 1. (Os03t0182000-00)",3,4311292,4314363,"GO:0004497;GO:0055114;GO:0004499;GO:0050661;GO:0050660;GO:0016491","monooxygenase activity;oxidation-reduction process;N,N-dimethylaniline monooxygenase activity;NADP binding;flavin adenine dinucleotide binding;oxidoreductase activity","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. [EC:1.14.13.8];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS03T0196100-01","NA","NA",-0.483983087542789,"OS03G0196100",null,2.03850783885231,2.05866052682091,0.9757050667469671,1.9537738995667,"no","OS03G0196100","Os03g0196100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VU71]","Hypothetical protein. (Os03t0196100-01)",3,5002407,5003175,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0206800-01","NA","NA","-Inf","OS03G0206800",null,3.05776175827846,0,0,0,"no","OS03G0206800","Os03g0206800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DU52]","Hypothetical protein. (Os03t0206800-01)",3,5593822,5594320]
["OS03T0210100-00","NA","NA","NA","OS03G0210100",null,0,0,0,0,"no","OS03G0210100","Putative cysteine proteinase inhibitor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q10Q47]","Hypothetical conserved gene. (Os03t0210100-00)",3,5753283,5753636,"GO:0006952;GO:0010951;GO:0010466;GO:0030414;GO:0004869;GO:0005576;GO:0002020;GO:2000117","defense response;negative regulation of endopeptidase activity;negative regulation of peptidase activity;peptidase inhibitor activity;cysteine-type endopeptidase inhibitor activity;extracellular region;protease binding;negative regulation of cysteine-type endopeptidase activity","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. [GOC:jl];Stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:dph, GOC:tb];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Interacting selectively and non-covalently with any protease or peptidase. [GOC:hjd];Any process that stops, prevents, or reduces the frequency, rate or extent of cysteine-type endopeptidase activity. [GOC:obol, GOC:yaf]"]
["OS03T0225200-02","NA","NA","NA","OS03G0225200","SDS",0,0,0,0,"no","OS03G0225200","Cyclin-SDS-like [Source:UniProtKB/Swiss-Prot;Acc:Q10PQ9]","Cyclin, A/B/D/E domain containing protein. (Os03t0225200-01);Similar to cyclin, N-terminal domain containing protein. (Os03t0225200-02)",3,6556389,6562025,"GO:0005634;GO:0051321;GO:0051301;GO:0007049;GO:0045143;GO:0007129","nucleus;meiotic cell cycle;cell division;cell cycle;homologous chromosome segregation;synapsis","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. [GOC:ai];The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. [GOC:go_curators, GOC:mtg_cell_cycle];The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the first division of the meiotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner; this pairing off, referred to as synapsis, permits genetic recombination. One homolog (both sister chromatids) of each morphologic type goes into each of the resulting chromosome sets. [GOC:ai, ISBN:0815316194];The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Synapsis begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete. [GOC:mtg_cell_cycle, PMID:22582262, PMID:23117617]"]
["OS03T0236300-00","NA","NA","NA","OS03G0236300",null,0,0,0,0,"no","OS03G0236300","Os03g0236300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VV85]","Similar to Myb-like DNA-binding domain containing protein, expressed. (Os03t0236300-00)",3,7184393,7189221,"GO:0003677","DNA binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0245300-01","NA","NA","NA","OS03G0245300",null,0,0,0,0,"no","OS03G0245300","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10P64]","Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor. (Os03t0245300-01)",3,7677693,7679130]
["OS03T0259400-00","NA","NA",1.38995679894872,"OS03G0259400",null,2.03850783885231,2.05866052682091,6.82993546722877,3.9075477991334,"no","OS03G0259400","Leucanthocyanidin reductase [Source:UniProtKB/TrEMBL;Acc:Q3KN74]","Similar to Leucoanthocyanidin reductase (EC 1.17.1.3) (Leucocyanidin reductase). (Os03t0259400-00)",3,8406809,8408296,"GO:0055114;GO:0016491;GO:0033788","oxidation-reduction process;oxidoreductase activity;leucoanthocyanidin reductase activity","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the reaction: (2R,3S)-catechin + NADP+ + H2O = 2,3-trans-3,4-cis-leucocyanidin + NADPH + H+. [EC:1.17.1.3]"]
["OS03T0270600-00","NA","NA",1.18594486258062,"OS03G0270600",null,1.91753660025693,0,0,4.36263258638705,"no","OS03G0270600","Os03g0270600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VVY7]","Cytochrome c domain domain containing protein. (Os03t0270600-00)",3,9039754,9041273,"GO:0009055;GO:0046872;GO:0020037","electron carrier activity;metal ion binding;heme binding","Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS03T0271350-00","NA","NA","NA","OS03G0271350",null,0,0,0,0,"no","OS03G0271350","Os03g0271350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VVZ9]","Hypothetical protein. (Os03t0271350-00)",3,9074669,9075729]
["OS03T0280900-00","NA","NA","NA","OS03G0280900",null,0,0,0,0,"no","OS03G0280900","Os03g0280900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VW70]","Hypothetical protein. (Os03t0280900-00)",3,9600935,9603459]
["OS03T0293600-01","NA","NA",0.51543474721081,"OS03G0293600",null,1.01925391942615,1.02933026341046,1.95141013349393,0.9768869497833491,"no","OS03G0293600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10MW2]","Hypothetical protein. (Os03t0293600-01)",3,10224027,10225034]
["OS03T0308100-01","NA","NA","NA","OS03G0308100",null,0,0,0,0,"no","OS03G0308100","ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:Q50LH5]","Peptidase S14, ClpP family protein. (Os03t0308100-01);Peptidase S14, ClpP family protein. (Os03t0308100-02);Peptidase S14, ClpP family protein. (Os03t0308100-03)",3,10966803,10969767,"GO:0008236;GO:0004252;GO:0006508;GO:0016787;GO:0008233","serine-type peptidase activity;serine-type endopeptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS03T0323350-00","NA","NA","NA","OS03G0323350",null,0,0,0,0,"no","OS03G0323350","Os03g0323350 protein [Source:UniProtKB/TrEMBL;Acc:C7J0A6]","Similar to Glycosyl hydrolase family 1 protein. (Os03t0323350-00)",3,11720632,11721347,"GO:1901657;GO:0008422;GO:0004553;GO:0005975;GO:0016787;GO:0016020;GO:0016021","glycosyl compound metabolic process;beta-glucosidase activity;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;membrane;integral component of membrane","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0325900-00","NA","NA","NA","OS03G0325900",null,0,0,0,0,"no","OS03G0325900","Os03g0325900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWY6]","Ricin B lectin domain containing protein. (Os03t0325900-00)",3,11879152,11881744,"GO:0030246","carbohydrate binding","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah]"]
["OS03T0335500-01","NA","NA",0.5913300463265321,"OS03G0335500",null,0.156801394816931,0.291895214529167,0.40985000733401705,0.26617205407327205,"no","OS03G0335500","Leucine-rich repeat transmembrane protein kinase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10LT7]","Protein kinase, core domain containing protein. (Os03t0335500-01);Protein kinase, core domain containing protein. (Os03t0335500-02)",3,12411275,12415106,"GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0005886;GO:0004674;GO:0016740","phosphorylation;kinase activity;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;plasma membrane;protein serine/threonine kinase activity;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0347750-00","NA","NA","NA","OS03G0347750",null,0,0,0,0,"no","OS03G0347750","Os03g0347750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VY94]","Hypothetical gene. (Os03t0347750-00)",3,13024539,13025126]
["OS03T0360500-01","NA","NA","-Inf","OS03G0360500",null,39.1393505059644,0,0,0,"no","OS03G0360500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10L35]","Protein of unknown function DUF1077 family protein. (Os03t0360500-01);Protein of unknown function DUF1077 family protein. (Os03t0360500-02)",3,14000674,14003970,"GO:0072546;GO:0034975;GO:0016020;GO:0016021;GO:0005783","ER membrane protein complex;protein folding in endoplasmic reticulum;membrane;integral component of membrane;endoplasmic reticulum","A transmembrane protein complex that is involved in protein folding in the endoplasmic reticulum. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6. [GOC:dgf, PMID:19325107];A protein folding process that takes place in the endoplasmic reticulum (ER). Secreted, plasma membrane and organelle proteins are folded in the ER, assisted by chaperones and foldases (protein disulphide isomerases), and additional factors required for optimal folding (ATP, Ca2+ and an oxidizing environment to allow disulfide bond formation). [GOC:mah, GOC:vw];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732]"]
["OS03T0371350-00","NA","NA","-Inf","OS03G0371350",null,0,1.02933026341046,0,0,"no","OS03G0371350","Os03g0371350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VXV8]","Similar to Cytochrome P450 family protein, expressed. (Os03t0371350-00)",3,14571477,14572023,"GO:0016705;GO:0005506;GO:0055114;GO:0020037","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS03T0378832-00","NA","NA","-Inf","OS03G0378832",null,0,1.02933026341046,0,0,"no","OS03G0378832","CLE family OsCLE304 protein [Source:UniProtKB/TrEMBL;Acc:A8R3N2]","Hypothetical conserved gene. (Os03t0378832-00)",3,14988410,14988685]
["OS03T0380700-00","NA","NA","NA","OS03G0380700",null,0,0,0,0,"no","OS03G0380700","Os03g0380700 protein [Source:UniProtKB/TrEMBL;Acc:Q75M58]","Similar to Zinc finger, C3HC4 type family protein. (Os03t0380700-00)",3,15076021,15076626,"GO:0000209;GO:0042787;GO:0043161;GO:0061630","protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity","Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777]"]
["OS03T0393100-00","NA","NA","NA","OS03G0393100",null,0,0,0,0,"no","OS03G0393100","Os03g0393100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZ46]","Similar to retinoid-inducible serine carboxypeptidase. (Os03t0393100-00)",3,15795756,15796260,"GO:0004185;GO:0006508","serine-type carboxypeptidase activity;proteolysis","Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS03T0404800-01","NA","NA",0.613317553148342,"OS03G0404800",null,4.07701567770462,1.02933026341046,2.9271152002409,4.88443474891674,"no","OS03G0404800","NAD dependent epimerase/dehydratase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10JX4]","NAD(P)-binding domain containing protein. (Os03t0404800-01)",3,16551354,16561430,"GO:0016616;GO:0003854;GO:0006694;GO:0016853;GO:0055114","oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;3-beta-hydroxy-delta5-steroid dehydrogenase activity;steroid biosynthetic process;isomerase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];Catalysis of the reaction: a 3-beta-hydroxy-delta(5)-steroid + NAD+ = a 3-oxo-delta(5)-steroid + NADH + H(+). [EC:1.1.1.145];The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS03T0417750-00","NA","NA","NA","OS03G0417750",null,0,0,0,0,"no","OS03G0417750","Os03g0417750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VYS3]","Hypothetical protein. (Os03t0417750-00)",3,17340684,17341207]
["OS03T0436400-02","NA","NA","Inf","OS03G0436400",null,0,0,12.3994971865082,1.7200886076290402E-3,"no","OS03G0436400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q60DC5]","Similar to A.thaliana gene induced upon wounding stress. (Os03t0436400-01);Similar to A.thaliana gene induced upon wounding stress. (Os03t0436400-02);Similar to A.thaliana gene induced upon wounding stress. (Os03t0436400-03)",3,18405282,18406843]
["OS03T0563400-00","NA","NA","NA","OS03G0563400",null,0,0,0,0,"no","OS03G0563400","Os03g0563400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZA9]","Similar to HAT family dimerisation domain containing protein. (Os03t0563400-00)",3,20257176,20259092,"GO:0005634;GO:0006357;GO:0003700;GO:0000977;GO:0046983;GO:0003676;GO:0003677","nucleus;regulation of transcription from RNA polymerase II promoter;transcription factor activity, sequence-specific DNA binding;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;nucleic acid binding;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS03T0564800-00","NA","NA","-Inf","OS03G0564800",null,2.03850783885231,0,0,0,"no","OS03G0564800","Os03g0564800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W040]","Putative harbinger transposase-derived nuclease domain containing protein. (Os03t0564800-00)",3,20343954,20344421,"GO:0016788;GO:0005840","hydrolase activity, acting on ester bonds;ribosome","Catalysis of the hydrolysis of any ester bond. [GOC:jl];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732]"]
["OS03T0578500-01","NA","NA","Inf","OS03G0578500",null,0,0,1.07699590858408,2.17670106646925,"no","OS03G0578500","Os03g0578500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W0F6]","Hypothetical conserved gene. (Os03t0578500-01)",3,21198249,21199192]
["OS03T0591600-00","NA","NA","NA","OS03G0591600",null,0,0,0,0,"no","OS03G0591600","Os03g0591600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W0I2]","Protein of unknown function DUF247, plant domain containing protein. (Os03t0591600-00)",3,21950474,21952518,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0609200-00","NA","NA","NA","OS03G0609200",null,0,0,0,0,"no","OS03G0609200","Os03g0609200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W0R9]","Similar to DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide. (Os03t0609200-00)",3,22961583,22967221,"GO:0000723;GO:0003678;GO:0032508;GO:0006281","telomere maintenance;DNA helicase activity;DNA duplex unwinding;DNA repair","Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS03T0625300-00","NA","NA",0.9228110760615891,"OS03G0625300",null,0,1.02933026341046,1.95141013349393,0,"no","OS03G0625300","Os03g0625300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W0A9]","Similar to nucleotide binding protein. (Os03t0625300-00)",3,23781012,23782726]
["OS03T0640825-00","NA","NA","NA","OS03G0640825",null,0,0,0,0,"no","OS03G0640825","Os03g0640825 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W181]","Hypothetical protein. (Os03t0640825-00)",3,24652014,24657602]
["OS03T0643433-00","NA","NA",-1.07718892393841,"OS03G0643433",null,0,2.05866052682091,0.9757050667469671,0,"no","OS03G0643433","Os03g0643433 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1C4]","Similar to J013022N21, full insert sequence. (Os03t0643433-00)",3,24811805,24814017,"GO:0008835;GO:0006278;GO:0009231;GO:0000145;GO:0006887;GO:0016787;GO:0055114;GO:0003676;GO:0008270;GO:0003824;GO:0016020;GO:0016021;GO:0003964","diaminohydroxyphosphoribosylaminopyrimidine deaminase activity;RNA-dependent DNA biosynthetic process;riboflavin biosynthetic process;exocyst;exocytosis;hydrolase activity;oxidation-reduction process;nucleic acid binding;zinc ion binding;catalytic activity;membrane;integral component of membrane;RNA-directed DNA polymerase activity","Catalysis of the reaction: 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(2)O + H(+) = 5-amino-6-(5-phosphoribosylamino)uracil + NH(4)(+). [EC:3.5.4.26, RHEA:21871];A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html];A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. [GOC:cilia, PMID:15292201, PMID:27243008, PMID:9700152];A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. [GOC:mah, ISBN:0716731363, PMID:22323285];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. [EC:2.7.7.49]"]
["OS03T0652600-00","NA","NA","-Inf","OS03G0652600",null,0,1.3057586305973499,0,0,"no","OS03G0652600","Os03g0652600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1E9]","Similar to Not1 N-terminal domain, CCR4-Not complex component family protein, expressed. (Os03t0652600-00)",3,25376204,25376854]
["OS03T0660500-00","NA","NA","NA","OS03G0660500",null,0,0,0,0,"no","OS03G0660500","Auxin responsive protein [Source:UniProtKB/TrEMBL;Acc:Q75GQ1]","Auxin responsive SAUR protein domain containing protein. (Os03t0660500-00)",3,25898609,25899041,"GO:0009733","response to auxin","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]"]
["OS03T0673000-00","NA","NA","NA","OS03G0673000",null,0,0,0,0,"no","OS03G0673000","Os03g0673000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W1A5]","Similar to Knotted1-type homeobox protein OSH10 (Fragment). (Os03t0673000-00)",3,26581781,26582090,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS03T0680566-00","NA","NA",1.52371251728298,"OS03G0680566",null,1.01925391942615,0,0,2.93066084935005,"no","OS03G0680566","Os03g0680566 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W217]","Tetratricopeptide TPR-1 domain containing protein. (Os03t0680566-00)",3,27031338,27042644,"GO:0015074;GO:0003676;GO:0008270","DNA integration;nucleic acid binding;zinc ion binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0690600-02","NA","NA","NA","OS03G0690600",null,0,0,0,0,"no","OS03G0690600","GRAS family transcription factor containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q6AVK7]","Similar to SCARECROW-like protein. (Os03t0690600-01);Similar to SCARECROW-like protein. (Os03t0690600-02);Similar to SCARECROW-like protein. (Os03t0690600-03)",3,27587894,27592754,"GO:0006355;GO:0006351;GO:0043565;GO:0005634;GO:0003700","regulation of transcription, DNA-templated;transcription, DNA-templated;sequence-specific DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH]"]
["OS03T0692400-01","NA","NA","Inf","OS03G0692400",null,0,0,9.370834078549,0,"no","OS03G0692400","Auxin-regulated protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q6AV45]","Protein of unknown function DUF966 family protein. (Os03t0692400-01);Protein of unknown function DUF966 family protein. (Os03t0692400-02)",3,27705348,27711024]
["OS03T0702400-01","NA","NA","NA","OS03G0702400",null,0,0,0,0,"no","OS03G0702400","Os03g0702400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DPB5]","Hypothetical protein. (Os03t0702400-01)",3,28219432,28221136]
["OS03T0721400-02","NA","NA","NA","OS03G0721400",null,0,0,0,0,"no","OS03G0721400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6ASU6]","Protein of unknown function DUF841, eukaryotic family protein. (Os03t0721400-01);Protein of unknown function DUF841, eukaryotic family protein. (Os03t0721400-02)",3,29275573,29278607,"GO:0005783;GO:0030176;GO:0006810;GO:0006811;GO:0016020;GO:0016021;GO:0005262;GO:0070588;GO:0032469","endoplasmic reticulum;integral component of endoplasmic reticulum membrane;transport;ion transport;membrane;integral component of membrane;calcium channel activity;calcium ion transmembrane transport;endoplasmic reticulum calcium ion homeostasis","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:mtg_transport, GOC:pr, ISBN:0815340729];A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Any process involved in the maintenance of an internal steady state of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings. [GOC:mah]"]
["OS03T0730700-00","NA","NA","-Inf","OS03G0730700",null,1.01925391942615,0,0,0,"no","OS03G0730700","Os03g0730700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W2K4]","Similar to Serine carboxypeptidase family protein, expressed. (Os03t0730700-00)",3,29880945,29887239,"GO:0019748;GO:0016747;GO:0004185;GO:0004180;GO:0006508","secondary metabolic process;transferase activity, transferring acyl groups other than amino-acyl groups;serine-type carboxypeptidase activity;carboxypeptidase activity;proteolysis","The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. [GOC:go_curators];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS03T0744501-00","NA","NA","NA","OS03G0744501",null,0,0,0,0,"no","OS03G0744501","Os03g0744501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W2W3]","Conserved hypothetical protein. (Os03t0744501-00)",3,30558853,30559512]
["OS03T0746400-02","NA","NA","NA","OS03G0746400",null,0,0,0,0,"no","OS03G0746400","Os03g0746400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DNM5]","Pentatricopeptide repeat domain containing protein. (Os03t0746400-01);Hypothetical conserved gene. (Os03t0746400-02)",3,30676787,30679206,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0006278;GO:0090305;GO:0003676;GO:0003964","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;RNA-dependent DNA biosynthetic process;nucleic acid phosphodiester bond hydrolysis;nucleic acid binding;RNA-directed DNA polymerase activity","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand. [GOC:mah, ISBN:0198506732];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. [EC:2.7.7.49]"]
["OS03T0753750-00","NA","NA","NA","OS03G0753750",null,0,0,0,0,"no","OS03G0753750","Os03g0753750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W337]","Hypothetical conserved gene. (Os03t0753750-00)",3,31085814,31086050]
["OS03T0767650-00","NA","NA",1.4331414081840799,"OS03G0767650",null,1.3660284694862899,0,0,3.68874218568993,"no","OS03G0767650","Os03g0767650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W3H7]","Hypothetical gene. (Os03t0767650-00)",3,31786091,31787567]
["OS03T0782400-00","NA","NA",-2.39454318141115,"OS03G0782400",null,1.01925391942615,4.11732105364182,0,0.9768869497833491,"no","OS03G0782400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10CH8]","Conserved hypothetical protein. (Os03t0782400-00)",3,32428081,32428566,"GO:0007275","multicellular organism development","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]"]
["OS03T0793450-00","NA","NA","NA","OS03G0793450",null,0,0,0,0,"no","OS03G0793450","Os03g0793450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W4M6]","Hypothetical gene. (Os03t0793450-00)",3,32994431,32996265]
["OS03T0804700-00","NA","NA","NA","OS03G0804700",null,0,0,0,0,"no","OS03G0804700","Germin-like protein 3-8 [Source:UniProtKB/Swiss-Prot;Acc:Q75HJ4]","Germin-like protein 3-8. (Os03t0804700-00)",3,33591195,33591872,"GO:0005618;GO:0045735;GO:0030145;GO:0048046;GO:0046872;GO:0005576","cell wall;nutrient reservoir activity;manganese ion binding;apoplast;metal ion binding;extracellular region","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Functions in the storage of nutritious substrates. [GOC:ai];Interacting selectively and non-covalently with manganese (Mn) ions. [GOC:ai];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS03T0805900-00","NA","NA","-Inf","OS03G0805900",null,4.07701567770462,2.05866052682091,0,0,"no","OS03G0805900","Os03g0805900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W4Y6]","Similar to Pheophorbide a oxygenase. (Os03t0805900-00)",3,33659567,33662028,"GO:0010277;GO:0051537;GO:0016491;GO:0055114","chlorophyllide a oxygenase [overall] activity;2 iron, 2 sulfur cluster binding;oxidoreductase activity;oxidation-reduction process","Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+; and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+. [EC:1.13.12.14, MetaCyc:RXN-7677];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS03T0817800-01","NA","NA",-14.2966073085539,"OS03G0817800",null,22.5327374421811,0.0266971384161087,0,1.12103862000561E-3,"no","OS03G0817800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10BH4]","Protein of unknown function DUF231 domain containing protein. (Os03t0817800-01);Conserved hypothetical protein. (Os03t0817800-02);Protein of unknown function DUF231 domain containing protein. (Os03t0817800-03)",3,34311282,34314797,"GO:0005794;GO:0071554;GO:0016413","Golgi apparatus;cell wall organization or biogenesis;O-acetyltransferase activity","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah];Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. [GOC:ai]"]
["OS03T0829600-01","NA","NA","NA","OS03G0829600",null,0,0,0,0,"no","OS03G0829600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10B56]","Pectinesterase inhibitor domain containing protein. (Os03t0829600-01)",3,34851543,34852550,"GO:0043086;GO:0004857","negative regulation of catalytic activity;enzyme inhibitor activity","Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc]"]
["OS03T0836050-00","NA","NA","NA","OS03G0836050",null,0,0,0,0,"no","OS03G0836050","Os03g0836050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W599]","Hypothetical gene. (Os03t0836050-00)",3,35125652,35127712]
["OS03T0850200-00","NA","NA","-Inf","OS03G0850200",null,3.05776175827846,1.02933026341046,0,0,"no","OS03G0850200","Os03g0850200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W5G8]","Similar to Cytochrome P450. (Os03t0850200-00)",3,35777902,35778650,"GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016020;GO:0016021","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0853350-00","NA","NA","-Inf","OS03G0853350",null,1.01925391942615,3.31608688534121,0,0,"no","OS03G0853350","Os03g0853350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W5R1]","Hypothetical gene. (Os03t0853350-00)",3,35952419,35954852]
["OS04T0107900-03","NA","NA","NA","OS04G0107900",null,0,0,0,0,"no","OS04G0107900","Os04g0107900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W604]","Similar to Heat shock protein 82. (Os04t0107900-01);Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83). (Os04t0107900-02);Similar to Heat shock protein 80. (Os04t0107900-03);Similar to Heat shock protein 82. (Os04t0107900-04);Non-protein coding transcript. (Os04t0107900-05)",4,483234,485978,"GO:0006950;GO:0006457;GO:0051082;GO:0005524;GO:0016020;GO:0016021","response to stress;protein folding;unfolded protein binding;ATP binding;membrane;integral component of membrane","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0119000-01","NA","NA","Inf","OS04G0119000",null,0,0,3.05712674803228,3.57361195405439,"no","OS04G0119000","OSJNBa0020P07.9 protein [Source:UniProtKB/TrEMBL;Acc:Q7XTJ5]","Similar to H0716A07.5 protein. (Os04t0119000-01);Similar to H0716A07.5 protein. (Os04t0119000-02)",4,1125771,1126711]
["OS04T0129050-00","NA","NA","NA","OS04G0129050",null,0,0,0,0,"no","OS04G0129050",null,"Hypothetical protein. (Os04t0129050-00)",4,1814916,1815226]
["OS04T0155750-00","NA","NA","Inf","OS04G0155750",null,0,0,3.78705864889926,4.91236373133472e-06,"no","OS04G0155750","Os04g0155750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W6Q0]","Hypothetical protein. (Os04t0155750-00)",4,3847593,3849289]
["OS04T0171600-01","NA","NA","NA","OS04G0171600",null,0,0,0,0,"no","OS04G0171600","Os04g0171600 protein [Source:UniProtKB/TrEMBL;Acc:Q0JF26]","Similar to Cytochrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (Cytochrome P450Tyr). (Os04t0171600-01);Similar to OSIGBa0114I04.1 protein. (Os04t0171600-02)",4,4869932,4872151,"GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016020;GO:0016021;GO:0044550;GO:0016709;GO:0046872;GO:0016491;GO:0004497","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;membrane;integral component of membrane;secondary metabolite biosynthetic process;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;metal ion binding;oxidoreductase activity;monooxygenase activity","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732]"]
["OS04T0184900-00","NA","NA","NA","OS04G0184900",null,0,0,0,0,"no","OS04G0184900","Os04g0184900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7I4]","Hypothetical protein. (Os04t0184900-00)",4,5778855,5782412]
["OS04T0187001-00","NA","NA",1.91208017329633,"OS04G0187001",null,0,1.03901317499887,3.91034018333235,0,"no","OS04G0187001","Os04g0187001 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KIM1]","Hypothetical gene. (Os04t0187001-00)",4,5865174,5867983]
["OS04T0202700-01","NA","NA","NA","OS04G0202700",null,0,0,0,0,"no","OS04G0202700","Os04g0202700 protein [Source:UniProtKB/TrEMBL;Acc:Q0JEU4]","Similar to Avr9/Cf-9 rapidly elicited protein 256 (Fragment). (Os04t0202700-01)",4,6975301,6979039]
["OS04T0206650-00","NA","NA",0.924557571990385,"OS04G0206650",null,0,1.02933026341046,0,1.9537738995667,"no","OS04G0206650","Os04g0206650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KIN4]","Hypothetical protein. (Os04t0206650-00)",4,7157218,7159772]
["OS04T0225250-00","NA","NA","Inf","OS04G0225250",null,0,0,0,4.82221959696888,"no","OS04G0225250","Os04g0225250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W811]","Similar to OSIGBa0148I18.4 protein. (Os04t0225250-00)",4,8346834,8347622,"GO:0030246;GO:0016310;GO:0016301;GO:0004674;GO:0048544;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","carbohydrate binding;phosphorylation;kinase activity;protein serine/threonine kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0253601-01","NA","NA",0.8728640627306551,"OS04G0253601",null,2.33935233889799,2.95970301689025,3.2215955164069,6.48253706411341,"no","OS04G0253601","Os04g0253601 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7V9]","Conserved hypothetical protein. (Os04t0253601-01)",4,10019877,10023628]
["OS04T0266700-00","NA","NA","NA","OS04G0266700",null,0,0,0,0,"no","OS04G0266700","Os04g0266700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W7R6]","Hypothetical conserved gene. (Os04t0266700-00)",4,10996728,11005544]
["OS04T0281900-02","NA","NA",-0.192353638367386,"OS04G0281900",null,1.53560828251845,0,0,1.34392870752047,"no","OS04G0281900","CASP-like protein 2A1 [Source:UniProtKB/Swiss-Prot;Acc:Q0JEF7]","Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os04t0281900-01);Similar to OSIGBa0131F24.1 protein. (Os04t0281900-02)",4,12026975,12029441,"GO:0005886;GO:0016020;GO:0016021;GO:0051536","plasma membrane;membrane;integral component of membrane;iron-sulfur cluster binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai]"]
["OS04T0294812-00","NA","NA","NA","OS04G0294812",null,0,0,0,0,"no","OS04G0294812","Os04g0294812 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W867]","EF-hand-like domain domain containing protein. (Os04t0294812-00)",4,12935280,12935697]
["OS04T0312500-00","NA","NA","NA","OS04G0312500",null,0,0,0,0,"no","OS04G0312500","Os04g0312500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W8K2]","Similar to Eukaryotic aspartyl protease family protein. (Os04t0312500-00)",4,14209330,14210830,"GO:0030163;GO:0006508;GO:0004190","protein catabolic process;proteolysis;aspartic-type endopeptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732]"]
["OS04T0324400-00","NA","NA","NA","OS04G0324400",null,0,0,0,0,"no","OS04G0324400","Os04g0324400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W8M4]","Similar to cytokinin-O-glucosyltransferase 2. (Os04t0324400-00)",4,14988692,14988997,"GO:0016758;GO:0008152","transferase activity, transferring hexosyl groups;metabolic process","Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS04T0338950-00","NA","NA","NA","OS04G0338950",null,0,0,0,0,"no","OS04G0338950","Os04g0338950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W945]","Hypothetical protein. (Os04t0338950-00)",4,15986497,15989460]
["OS04T0343900-01","NA","NA","NA","OS04G0343900",null,0,0,0,0,"no","OS04G0343900","Os04g0343900 protein [Source:UniProtKB/TrEMBL;Acc:Q0JE16]","Conserved hypothetical protein. (Os04t0343900-01)",4,16345977,16347180]
["OS04T0357000-00","NA","NA","NA","OS04G0357000",null,0,0,0,0,"no","OS04G0357000","Os04g0357000 protein [Source:UniProtKB/TrEMBL;Acc:B9FEM3]","Conserved hypothetical protein. (Os04t0357000-00)",4,17056567,17056898]
["OS04T0375400-00","NA","NA","NA","OS04G0375400",null,0,0,0,0,"no","OS04G0375400","Os04g0375400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9H3]","Similar to Calmodulin. (Os04t0375400-00)",4,18331750,18332254,"GO:0005509","calcium ion binding","Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai]"]
["OS04T0385350-00","NA","NA","NA","OS04G0385350",null,0,0,0,0,"no","OS04G0385350","Os04g0385350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9J5]","Hypothetical protein. (Os04t0385350-00)",4,18890406,18890819]
["OS04T0401000-01","NA","NA","NA","OS04G0401000","PI21",0,0,0,0,"no","OS04G0401000","Protein PYRICULARIA ORYZAE RESISTANCE 21 [Source:UniProtKB/Swiss-Prot;Acc:Q7XL73]","Proline-rich protein, Blast resistance (Os04t0401000-01);Similar to Pi21 protein. (Os04t0401000-02)",4,19835206,19836892,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0006952;GO:0046872;GO:0009623;GO:1900150","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;defense response;metal ion binding;response to parasitic fungus;regulation of defense response to fungus","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a parasitic fungus, a fungus which spends all or part of its life in or on another organism from which it obtains nourishment and/or protection. [GOC:hb, ISBN:0198506732];Any process that modulates the frequency, rate or extent of defense response to fungus. [GOC:dhl, GOC:TermGenie, PMID:22242006]"]
["OS04T0412300-01","NA","NA","Inf","OS04G0412300",null,0,0,0,1.92600127353255,"no","OS04G0412300","OSJNBa0073L04.8 protein [Source:UniProtKB/TrEMBL;Acc:Q7XVG8]","Similar to H0717B12.10 protein. (Os04t0412300-01);Glycoside hydrolase, family 17 protein. (Os04t0412300-02)",4,20372912,20377754,"GO:0004553;GO:0005975;GO:0016787;GO:0030247;GO:0046658","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;polysaccharide binding;anchored component of plasma membrane","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah]"]
["OS04T0413100-01","NA","NA","NA","OS04G0413100",null,0,0,0,0,"no","OS04G0413100","Os04g0413100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDC7]","Similar to OSIGBa0134P10.7 protein. (Os04t0413100-01)",4,20411176,20411853]
["OS04T0429050-00","NA","NA","NA","OS04G0429050",null,0,0,0,0,"no","OS04G0429050","OSJNBa0042L16.9 protein [Source:UniProtKB/TrEMBL;Acc:Q7XUT6]","Similar to OSIGBa0093L02.1 protein. (Os04t0429050-00)",4,21248865,21249599,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0443750-00","NA","NA","NA","OS04G0443750",null,0,0,0,0,"no","OS04G0443750","Os04g0443750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WAK3]","Similar to CPRD8 protein. (Os04t0443750-00)",4,22100238,22101910,"GO:0010181;GO:0016491;GO:0055114;GO:0003824","FMN binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS04T0449000-01","NA","NA","Inf","OS04G0449000",null,0,0,0,7.28418806129969,"no","OS04G0449000","Mitochondrial uncoupling protein 3 [Source:Projected from Arabidopsis thaliana (AT1G14140) UniProtKB/Swiss-Prot;Acc:Q9XI74]","Similar to H0818E04.8 protein. (Os04t0449000-01);Similar to H0818E04.8 protein. (Os04t0449000-02)",4,22377034,22379345,"GO:0006810;GO:0016020;GO:0016021;GO:0022857;GO:0006839;GO:0005743;GO:0055085;GO:0031966;GO:0009409;GO:0051881","transport;membrane;integral component of membrane;transmembrane transporter activity;mitochondrial transport;mitochondrial inner membrane;transmembrane transport;mitochondrial membrane;response to cold;regulation of mitochondrial membrane potential","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];Transport of substances into, out of or within a mitochondrion. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. [GOC:mah, NIF_Subcellular:sao1045389829];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. [GOC:ai]"]
["OS04T0458300-02","NA","NA","Inf","OS04G0458300",null,0,0,1.4704762924639902E-4,0,"no","OS04G0458300","Aldose 1-epimerase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WB27]","Similar to OSIGBa0097P08.2 protein. (Os04t0458300-01);Similar to OSIGBa0097P08.2 protein. (Os04t0458300-02)",4,22893849,22898645,"GO:0019318;GO:0004034;GO:0016853;GO:0005975;GO:0030246;GO:0033499;GO:0006006;GO:0003824","hexose metabolic process;aldose 1-epimerase activity;isomerase activity;carbohydrate metabolic process;carbohydrate binding;galactose catabolic process via UDP-galactose;glucose metabolic process;catalytic activity","The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:0198506732];Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose. [EC:5.1.3.3];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose. [GOC:mah, MetaCyc:PWY-3821];The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS04T0468600-03","NA","NA","NA","OS04G0468600",null,0,0,0,0,"no","OS04G0468600","Os04g0468600 protein [Source:UniProtKB/TrEMBL;Acc:B7E663]","Hypothetical conserved gene. (Os04t0468600-01);Heavy metal transport/detoxification protein domain containing protein. (Os04t0468600-02);Heavy metal transport/detoxification protein domain containing protein. (Os04t0468600-03);Similar to cDNA clone:006-303-A07, full insert sequence. (Os04t0468600-05);Similar to cDNA clone:006-303-A07, full insert sequence. (Os04t0468600-06)",4,23408498,23410250,"GO:0046916;GO:0030001;GO:0046914;GO:0005737","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS04T0470901-00","NA","NA",-0.0656841888500517,"OS04G0470901",null,3.05776175827846,1.02933026341046,1.95141013349393,1.9537738995667,"no","OS04G0470901","Os04g0470901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WBP3]","Hypothetical gene. (Os04t0470901-00)",4,23527103,23527678,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0483200-02","NA","NA","NA","OS04G0483200",null,0,0,0,0,"no","OS04G0483200","OSJNBa0081L15.3 protein [Source:UniProtKB/TrEMBL;Acc:Q7FAW5]","Steroid nuclear receptor, ligand-binding domain containing protein. (Os04t0483200-01);Similar to H0805A05.1 protein. (Os04t0483200-02)",4,24156588,24161025,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0496150-00","NA","NA",-0.0672928563807573,"OS04G0496150",null,3.05776175827846,2.05866052682091,0.9757050667469671,3.9075477991334,"no","OS04G0496150","Os04g0496150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WC51]","Similar to H0306B06.2 protein. (Os04t0496150-00)",4,24815492,24816067]
["OS04T0508751-00","NA","NA","NA","OS04G0508751",null,0,0,0,0,"no","OS04G0508751","Os04g0508751 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCA4]","Similar to inorganic phosphate transporter 1-7. (Os04t0508751-00)",4,25421987,25422322,"GO:0022857;GO:0055085;GO:0016021;GO:0016020","transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS04T0516900-01","NA","NA","NA","OS04G0516900",null,0,0,0,0,"no","OS04G0516900","OSJNBa0073E02.4 protein [Source:UniProtKB/TrEMBL;Acc:Q7XKW4]","Conserved hypothetical protein. (Os04t0516900-01)",4,25833124,25835026,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0528300-02","NA","NA","NA","OS04G0528300",null,0,0,0,0,"no","OS04G0528300","Os04g0528300 protein [Source:UniProtKB/TrEMBL;Acc:Q0JBJ8]","Similar to ABC transporter. (Os04t0528300-01);Similar to OSIGBa0115K01-H0319F09.18 protein. (Os04t0528300-02);Similar to OSIGBa0115K01-H0319F09.18 protein. (Os04t0528300-03)",4,26395912,26401438,"GO:0016887;GO:0005524;GO:0016020;GO:0016021;GO:0015908;GO:0015245;GO:0042626;GO:0005886;GO:0055085;GO:0000166","ATPase activity;ATP binding;membrane;integral component of membrane;fatty acid transport;fatty acid transporter activity;ATPase activity, coupled to transmembrane movement of substances;plasma membrane;transmembrane transport;nucleotide binding","Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [GOC:ai];Enables the directed movement of fatty acids into, out of or within a cell, or between cells. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:0198506732];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS04T0530900-01","NA","NA","NA","OS04G0530900",null,0,0,0,0,"no","OS04G0530900","Probable galacturonosyltransferase-like 3 [Source:Projected from Arabidopsis thaliana (AT1G13250) UniProtKB/Swiss-Prot;Acc:Q0V7R1]","Glycosyl transferase, family 8 protein. (Os04t0530900-01);Glycosyl transferase, family 8 protein. (Os04t0530900-02)",4,26553080,26554821,"GO:0000271;GO:0016757;GO:0005794;GO:0016740","polysaccharide biosynthetic process;transferase activity, transferring glycosyl groups;Golgi apparatus;transferase activity","The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0540750-00","NA","NA","NA","OS04G0540750",null,0,0,0,0,"no","OS04G0540750","Os04g0540750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCW3]","Hypothetical protein. (Os04t0540750-00)",4,27044262,27048538]
["OS04T0554300-00","NA","NA","NA","OS04G0554300",null,0,0,0,0,"no","OS04G0554300","OSJNBa0010H02.21 protein [Source:UniProtKB/TrEMBL;Acc:Q7XT31]","Similar to OSIGBa0143N19.14 protein. (Os04t0554300-00)",4,27736481,27737152,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0565750-00","NA","NA","NA","OS04G0565750",null,0,0,0,0,"no","OS04G0565750","Os04g0565750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDI9]","Hypothetical gene. (Os04t0565750-00)",4,28367022,28367958]
["OS04T0572100-01","NA","NA",2.37695747959351,"OS04G0572100",null,0,2.7319566742667503,0,14.1908793402239,"no","OS04G0572100","Os04g0572100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDY7]","Hypothetical gene. (Os04t0572100-01)",4,28809427,28812531]
["OS04T0573200-04","NA","NA","NA","OS04G0573200","CCS",0,0,0,0,"no","OS04G0573200","Copper chaperone for superoxide dismutase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XTY9]","Superoxide dismutase, copper/zinc binding domain containing protein. (Os04t0573200-01);Similar to OSIGBa0147H17.7 protein. (Os04t0573200-02);Superoxide dismutase, copper/zinc binding domain containing protein. (Os04t0573200-03);Hypothetical gene. (Os04t0573200-04);Hypothetical gene. (Os04t0573200-05)",4,28874420,28882313,"GO:0006801;GO:0030001;GO:0046872;GO:0055114;GO:0005737;GO:0008270;GO:0009536;GO:0009507;GO:0043085;GO:0016532","superoxide metabolic process;metal ion transport;metal ion binding;oxidation-reduction process;cytoplasm;zinc ion binding;plastid;chloroplast;positive regulation of catalytic activity;superoxide dismutase copper chaperone activity","The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. [CHEBI:18421, GOC:jl];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any process that activates or increases the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase, to activate superoxide dismutase activity. [GOC:vw, http://link.springer-ny.com/link/service/journals/00335/papers/0011005/00110409.html, PMID:15064408, PMID:9295278]"]
["OS04T0584600-02","NA","NA","NA","OS04G0584600","CPK13",0,0,0,0,"no","OS04G0584600","Calcium-dependent protein kinase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXQ3]","Similar to Calcium dependent protein kinase. (Os04t0584600-01);Similar to Calcium-dependent protein kinase. (Os04t0584600-02);Similar to cDNA clone:001-041-E12, full insert sequence. (Os04t0584600-03)",4,29531283,29535738,"GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0009414;GO:0009409;GO:0046777;GO:0009738;GO:0009931;GO:0005516;GO:0004683;GO:0035556;GO:0018105;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005509;GO:0046872;GO:1901002;GO:0016020;GO:0016740;","ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;response to water deprivation;response to cold;protein autophosphorylation;abscisic acid-activated signaling pathway;calcium-dependent protein serine/threonine kinase activity;calmodulin binding;calmodulin-dependent protein kinase activity;intracellular signal transduction;peptidyl-serine phosphorylation;nucleus;cytoplasm;phosphorylation;kinase activity;calcium ion binding;metal ion binding;positive regulation of response to salt stress;membrane;transferase activity;","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). [ISBN:0198506732];A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. [GOC:signaling, GOC:sm, PMID:24269821];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions are dependent on the presence of calcium ions. [GOC:mah];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin. [GOC:mah, PMID:11264466];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that activates or increases the frequency, rate or extent of response to salt stress. [GOC:TermGenie, PMID:22627139];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];"]
["OS04T0595125-00","NA","NA","Inf","OS04G0595125",null,0,0,1.95141013349393,1.9537738995667,"no","OS04G0595125","Os04g0595125 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WEG4]","Hypothetical protein. (Os04t0595125-00)",4,30062549,30065258]
["OS04T0607200-03","NA","NA","-Inf","OS04G0607200",null,2.33709425674229,1.26456457613796,0,0,"no","OS04G0607200","Os04g0607200 protein [Source:UniProtKB/TrEMBL;Acc:B9FCD7]","Hypothetical conserved gene. (Os04t0607200-01);Conserved hypothetical protein. (Os04t0607200-02);Conserved hypothetical protein. (Os04t0607200-03)",4,30703868,30707501]
["OS04T0617200-01","NA","NA",0.802472039566515,"OS04G0617200",null,2.03850783885231,4.11732105364182,7.80564053397574,2.93066084935005,"no","OS04G0617200","Os04g0617200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WEW8]","Conserved hypothetical protein. (Os04t0617200-01)",4,31353779,31354403]
["OS04T0627900-01","NA","NA",-0.06299647936696749,"OS04G0627900",null,1.01925391942615,0,0.9757050667469671,0,"no","OS04G0627900","Os04g0627900 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9W8]","Translation initiation factor SUI1 domain containing protein. (Os04t0627900-01)",4,31957711,31958630,"GO:0006413;GO:0003743;GO:0003723","translational initiation;translation initiation factor activity;RNA binding","The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS04T0629300-01","NA","NA","NA","OS04G0629300",null,0,0,0,0,"no","OS04G0629300","OSJNBa0089N06.14 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9V7]","Similar to H0303G06.18 protein. (Os04t0629300-01);DEAD-like helicase, N-terminal domain containing protein. (Os04t0629300-02)",4,32009536,32016407,"GO:0005737;GO:0046872;GO:0005524","cytoplasm;metal ion binding;ATP binding","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS04T0641350-00","NA","NA","NA","OS04G0641350",null,0,0,0,0,"no","OS04G0641350","Os04g0641350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFP2]","Hypothetical protein. (Os04t0641350-00)",4,32632433,32633727]
["OS04T0649700-01","NA","NA","NA","OS04G0649700",null,0,0,0,0,"no","OS04G0649700","OSJNBb0059K02.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XMQ6]","Serine/threonine protein kinase-related domain containing protein. (Os04t0649700-01);Serine/threonine protein kinase-related domain containing protein. (Os04t0649700-02);Similar to H0212B02.5 protein. (Os04t0649700-03);Similar to H0212B02.5 protein. (Os04t0649700-04);Similar to H0212B02.5 protein. (Os04t0649700-05)",4,33109718,33113326,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0016310;GO:0016301","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;phosphorylation;kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS04T0657500-01","NA","NA",-0.0713090396327525,"OS04G0657500",null,1.01925391942615,2.05866052682091,0.9757050667469671,1.9537738995667,"no","OS04G0657500","OSJNBa0071I13.19 protein [Source:UniProtKB/TrEMBL;Acc:Q7FAL5]","Lipase, class 3 family protein. (Os04t0657500-01)",4,33530289,33533734,"GO:0006629;GO:0016787;GO:0016020;GO:0016021","lipid metabolic process;hydrolase activity;membrane;integral component of membrane","The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0674350-01","NA","NA","-Inf","OS04G0674350",null,1.01925391942615,1.02933026341046,0,0,"no","OS04G0674350","Os04g0674350 protein [Source:UniProtKB/TrEMBL;Acc:B9FD97]","Conserved hypothetical protein. (Os04t0674350-01)",4,34422248,34423285]
["OS04T0676650-00","NA","NA","NA","OS04G0676650",null,0,0,0,0,"no","OS04G0676650","Putative B3 domain-containing protein Os04g0676650 [Source:UniProtKB/Swiss-Prot;Acc:Q7XKC4]","Putative B3 domain-containing protein Os04g0676650. (Os04t0676650-00)",4,34548346,34553030,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS04T0686500-01","NA","NA",-0.0721823756206581,"OS04G0686500",null,2.03850783885231,4.11732105364182,4.87852533373483,0.9768869497833491,"no","OS04G0686500","Putative pentatricopeptide repeat-containing protein At3g15130 [Source:Projected from Arabidopsis thaliana (AT3G15130) UniProtKB/Swiss-Prot;Acc:P0C898]","Similar to H0723C07.12 protein. (Os04t0686500-01)",4,35086778,35089294,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0006468;GO:0005524;GO:0004672;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;protein phosphorylation;ATP binding;protein kinase activity;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS05T0104750-00","NA","NA","NA","OS05G0104750",null,0,0,0,0,"no","OS05G0104750","Os05g0104750 protein [Source:UniProtKB/TrEMBL;Acc:B9FM06]","Conserved hypothetical protein. (Os05t0104750-00)",5,258770,259018]
["OS05T0118700-00","NA","NA","NA","OS05G0118700","WOX2",0,0,0,0,"no","OS05G0118700","Putative WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7C3]","Similar to WUSCHEL-related homeobox 3B. (Os05t0118700-00)",5,977812,978752,"GO:0007275;GO:0003677;GO:0005634;GO:0006355;GO:0006351","multicellular organism development;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS05T0127233-00","NA","NA","NA","OS05G0127233",null,0,0,0,0,"no","OS05G0127233","Os05g0127233 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WHQ4]","Hypothetical protein. (Os05t0127233-00)",5,1535903,1536374]
["OS05T0141800-00","NA","NA","NA","OS05G0141800",null,0,0,0,0,"no","OS05G0141800","S-adenosylmethionine decarboxylase proenzyme 4 [Source:Projected from Arabidopsis thaliana (AT5G18930) UniProtKB/Swiss-Prot;Acc:Q3E9D5]","Similar to S-adenosylmethionine decarboxylase proenzyme. (Os05t0141800-00)",5,2417277,2418356,"GO:0008295;GO:0006597;GO:0004014;GO:0005829;GO:0006557;GO:0016831;GO:0006596;GO:0016829;GO:0099402","spermidine biosynthetic process;spermine biosynthetic process;adenosylmethionine decarboxylase activity;cytosol;S-adenosylmethioninamine biosynthetic process;carboxy-lyase activity;polyamine biosynthetic process;lyase activity;plant organ development","The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. [CHEBI:15746, GOC:curators];Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2). [EC:4.1.1.50, RHEA:15984];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. [GOC:mah, MetaCyc:S-ADENOSYLMETHIONINAMINE];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Development of a plant organ, a multi-tissue plant structure that forms a functional unit. [GOC:dos]"]
["OS05T0150550-00","NA","NA",0.052310863778563005,"OS05G0150550",null,3.5908731120175,0,1.87455458391339,1.84890974956789,"no","OS05G0150550","Os05g0150550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WI41]","Hypothetical protein. (Os05t0150550-00)",5,2893494,2899089]
["OS05T0152600-00","NA","NA","NA","OS05G0152600",null,0,0,0,0,"no","OS05G0152600","E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WI58]","Seven-in-absentia protein, sina domain containing protein. (Os05t0152600-00)",5,3036073,3039680,"GO:0061630;GO:0016567;GO:0007275;GO:0006511;GO:0046872;GO:0005634;GO:0008270","ubiquitin protein ligase activity;protein ubiquitination;multicellular organism development;ubiquitin-dependent protein catabolic process;metal ion binding;nucleus;zinc ion binding","Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS05T0166525-00","NA","NA",-0.0204294577072689,"OS05G0166525",null,5.82190103110468,2.4491811226118,4.73474457883364,3.42003928652174,"no","OS05G0166525","Os05g0166525 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WIA3]","Hypothetical protein. (Os05t0166525-00)",5,3970962,3973397]
["OS05T0171200-01","NA","NA","-Inf","OS05G0171200",null,1.01925391942615,0,0,0,"no","OS05G0171200","Os05g0171200 protein [Source:UniProtKB/TrEMBL;Acc:Q65XR8]","Embryo-specific 3 family protein. (Os05t0171200-01)",5,4262642,4263449]
["OS05T0188700-01","NA","NA",-1.28874327646748,"OS05G0188700",null,2.38668273143865,0,0,0.9768869497833491,"no","OS05G0188700","Os05g0188700 protein [Source:UniProtKB/TrEMBL;Acc:B7FA32]","Leucine-rich repeat domain containing protein. (Os05t0188700-01)",5,5446772,5448502]
["OS05T0202600-00","NA","NA","NA","OS05G0202600",null,0,0,0,0,"no","OS05G0202600","Os05g0202600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJ22]","Protein of unknown function DUF1677, plant domain containing protein. (Os05t0202600-00)",5,6380423,6380983]
["OS05T0203000-01","NA","NA",-0.0771889239384107,"OS05G0203000",null,0,1.02933026341046,0.9757050667469671,0,"no","OS05G0203000","Os05g0203000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJ24]","Similar to RALF. (Os05t0203000-01)",5,6405755,6406491]
["OS05T0212750-00","NA","NA","NA","OS05G0212750",null,0,0,0,0,"no","OS05G0212750","Os05g0212750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJ69]","Hypothetical protein. (Os05t0212750-00)",5,6982203,6983112]
["OS05T0223100-00","NA","NA","NA","OS05G0223100",null,0,0,0,0,"no","OS05G0223100","Os05g0223100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJI7]","Hypothetical protein. (Os05t0223100-00)",5,7537879,7538540]
["OS05T0244800-00","NA","NA","NA","OS05G0244800",null,0,0,0,0,"no","OS05G0244800","Os05g0244800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WJZ5]","Hypothetical protein. (Os05t0244800-00)",5,8839090,8839504]
["OS05T0267100-01","NA","NA","NA","OS05G0267100",null,0,0,0,0,"no","OS05G0267100","Os05g0267100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ATF1]","Similar to Transporter-like protein. (Os05t0267100-01);Hypothetical conserved gene. (Os05t0267100-02);Similar to Transporter-like protein. (Os05t0267100-03)",5,10537478,10546650]
["OS05T0280700-01","NA","NA","NA","OS05G0280700",null,0,0,0,0,"no","OS05G0280700","Os05g0280700 protein [Source:UniProtKB/TrEMBL;Acc:Q75IG6]","Similar to Resistance protein candidate (Fragment). (Os05t0280700-01);Hypothetical conserved gene. (Os05t0280700-02)",5,11788697,11791865,"GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;GO:0016310;GO:0016301","protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;phosphorylation;kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS05T0290000-00","NA","NA","NA","OS05G0290000",null,0,0,0,0,"no","OS05G0290000","Os05g0290000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKG6]","Hypothetical protein. (Os05t0290000-00)",5,12621497,12622552]
["OS05T0304701-00","NA","NA","NA","OS05G0304701",null,0,0,0,0,"no","OS05G0304701","Os05g0304701 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKH8]","Hypothetical gene. (Os05t0304701-00)",5,13739484,13740261]
["OS05T0319875-00","NA","NA","-Inf","OS05G0319875",null,3.13736550789902,1.54061679166023,0,0,"no","OS05G0319875","Os05g0319875 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KKJ0]","Hypothetical protein. (Os05t0319875-00)",5,14854181,14856374]
["OS05T0330150-00","NA","NA","NA","OS05G0330150",null,0,0,0,0,"no","OS05G0330150","Os05g0330150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WKT6]","Similar to Prolamin. (Os05t0330150-00)",5,15401030,15458677]
["OS05T0349700-02","NA","NA","NA","OS05G0349700","CHLG",0,0,0,0,"no","OS05G0349700","Chlorophyll synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5W6H5]","Chl synthase, Chl biosynthesis (Os05t0349700-01);Similar to Chlorophyll synthase. (Os05t0349700-02);Similar to Chlorophyll synthase. (Os05t0349700-03)",5,16512069,16517848,"GO:0016765;GO:0016021;GO:0016020;GO:0031969;GO:0015995;GO:0009536;GO:0009507;GO:0016740;GO:0046408;GO:0009534","transferase activity, transferring alkyl or aryl (other than methyl) groups;integral component of membrane;membrane;chloroplast membrane;chlorophyll biosynthetic process;plastid;chloroplast;transferase activity;chlorophyll synthetase activity;chloroplast thylakoid","Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: chlorophyllide a + 2 H(+) + phytyl diphosphate = chlorophyll a + diphosphate. [EC:2.5.1.62, RHEA:17320];Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. [GOC:mtg_sensu, ISBN:0943883999]"]
["OS05T0363951-01","NA","NA",0.6659910480931921,"OS05G0363951",null,1.0199938511385,2.05995732471284,2.93149798461454,1.95533069893179,"no","OS05G0363951","Os05g0363951 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WLG9]","Hypothetical gene. (Os05t0363951-01)",5,17380138,17383398]
["OS05T0366900-01","NA","NA",0.24897306652884402,"OS05G0366900",null,1.01925391942615,3.08799079023137,2.9271152002409,1.9537738995667,"no","OS05G0366900","Os05g0366900 protein [Source:UniProtKB/TrEMBL;Acc:Q60DX5]","Conserved hypothetical protein. (Os05t0366900-01)",5,17621500,17623499]
["OS05T0376000-00","NA","NA","NA","OS05G0376000",null,0,0,0,0,"no","OS05G0376000","Os05g0376000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WLK9]","Hypothetical conserved gene. (Os05t0376000-00)",5,18148238,18157670,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS05T0392050-00","NA","NA",-1.3249321141625199,"OS05G0392050",null,4.31936873186787,1.02933026341046,1.1118011542693,1.02322819542927,"no","OS05G0392050","Os05g0392050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WM13]","Hypothetical conserved gene. (Os05t0392050-00)",5,19066737,19067981,"GO:0006468;GO:0004674;GO:0005737;GO:0046872;GO:0005524;GO:0004672","protein phosphorylation;protein serine/threonine kinase activity;cytoplasm;metal ion binding;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS05T0405000-01","NA","NA","Inf","OS05G0405000","PPDK1",0,0,11.5039931950644,0,"no","OS05G0405000","Pyruvate, phosphate dikinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6AVA8]","Orthophosphate dikinase precursor (EC 2.7.9.1). (Os05t0405000-01);Similar to Isoform 2 of Pyruvate, phosphate dikinase 1, chloroplastic. (Os05t0405000-02)",5,19718538,19737605,"GO:0016301;GO:0016310;GO:0016772;GO:0046872;GO:0005524;GO:0003824;GO:0006090;GO:0050242;GO:0005737;GO:0009536;GO:0009507;GO:0015979;GO:0000166;GO:0016740;GO:0005634;GO:0005829;GO:0009570","kinase activity;phosphorylation;transferase activity, transferring phosphorus-containing groups;metal ion binding;ATP binding;catalytic activity;pyruvate metabolic process;pyruvate, phosphate dikinase activity;cytoplasm;plastid;chloroplast;photosynthesis;nucleotide binding;transferase activity;nucleus;cytosol;chloroplast stroma","Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators];Catalysis of the reaction: ATP + phosphate + pyruvate = AMP + diphosphate + 2 H(+) + phosphoenolpyruvate. [EC:2.7.9.1, RHEA:10759];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS05T0418901-01","NA","NA","NA","OS05G0418901",null,0,0,0,0,"no","OS05G0418901","Os05g0418901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WMI5]","Hypothetical gene. (Os05t0418901-01)",5,20519776,20523629]
["OS05T0421750-00","NA","NA","NA","OS05G0421750",null,0,0,0,0,"no","OS05G0421750","Os05g0421750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WML7]","Similar to Glutamate decarboxylase. (Os05t0421750-00)",5,20683551,20684336,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS05T0433100-00","NA","NA","NA","OS05G0433100",null,0,0,0,0,"no","OS05G0433100","Os05g0433100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WMT0]","Similar to Serine/threonine-protein kinase SAPK4. (Os05t0433100-00)",5,21224846,21231030,"GO:0006468;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0005524;GO:0004672","protein phosphorylation;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS05T0442750-00","NA","NA",-1.08844722164353,"OS05G0442750",null,1.25506216741114,1.17022111970289,1.14053130873116,0,"no","OS05G0442750","Os05g0442750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WMV5]","Hypothetical protein. (Os05t0442750-00)",5,21669039,21670019]
["OS05T0457300-00","NA","NA","Inf","OS05G0457300",null,0,0,4.44580271978598,0,"no","OS05G0457300",null,"Hypothetical gene. (Os05t0457300-00)",5,22450870,22452294]
["OS05T0468400-01","NA","NA","NA","OS05G0468400",null,0,0,0,0,"no","OS05G0468400","Os05g0468400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNH9]","Domain of unknown function DUF1618 domain containing protein. (Os05t0468400-01)",5,22988230,22991467]
["OS05T0480000-01","NA","NA","-Inf","OS05G0480000",null,5.30788369410367,0,0,0,"no","OS05G0480000","Os05g0480000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNT5]","Serine/threonine protein kinase, Photosystem II (PSII) repair, Phosphorylation of PSII core protein (Os05t0480000-01);Similar to STN8 (Os05t0480000-02)",5,23598187,23602596,"GO:0004672;GO:0006468;GO:0005524;GO:0042549;GO:0009507;GO:0009579","protein kinase activity;protein phosphorylation;ATP binding;photosystem II stabilization;chloroplast;thylakoid","Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732]"]
["OS05T0481800-01","NA","NA","Inf","OS05G0481800",null,0,0,9.72099712960857E-5,0,"no","OS05G0481800","Os05g0481800 protein [Source:UniProtKB/TrEMBL;Acc:B7ER51]","Hypothetical conserved gene. (Os05t0481800-01);Hypothetical conserved gene. (Os05t0481800-02)",5,23692939,23697385,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];"]
["OS05T0493133-00","NA","NA","NA","OS05G0493133",null,0,0,0,0,"no","OS05G0493133","Os05g0493133 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WNZ6]","Hypothetical protein. (Os05t0493133-00)",5,24230962,24231613]
["OS05T0514250-00","NA","NA","NA","OS05G0514250",null,0,0,0,0,"no","OS05G0514250","Os05g0514250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPI3]","Hypothetical protein. (Os05t0514250-00)",5,25489525,25490887]
["OS05T0520401-00","NA","NA",0.471919319974322,"OS05G0520401",null,2.90480844661662,0,1.2446641615635001,2.78416980197333,"no","OS05G0520401","Os05g0520401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPW5]","Hypothetical protein. (Os05t0520401-00)",5,25833421,25834392]
["OS05T0528500-00","NA","NA",-0.48340115712056203,"OS05G0528500",null,2.03850783885231,2.05866052682091,0,2.93066084935005,"no","OS05G0528500","Os05g0528500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQ03]","Conserved hypothetical protein. (Os05t0528500-00)",5,26257051,26257809,"GO:0003700;GO:0043565;GO:0006355","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS05T0542800-02","NA","NA",21.7912665829897,"OS05G0542800",null,6.48562838895259e-06,2.99890718125641e-05,132.378208246103,3.57796310060521e-05,"no","OS05G0542800","Os05g0542800 protein [Source:UniProtKB/TrEMBL;Acc:Q65XN6]","Pectin lyase fold/virulence factor domain containing protein. (Os05t0542800-01);Similar to polygalacturonase. (Os05t0542800-02);Similar to polygalacturonase. (Os05t0542800-03)",5,26940318,26943170,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS05T0545200-00","NA","NA","NA","OS05G0545200",null,0,0,0,0,"no","OS05G0545200","Os05g0545200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KL66]","Similar to zinc ion binding. (Os05t0545200-00)",5,27057869,27062828,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS05T0558501-00","NA","NA","NA","OS05G0558501",null,0,0,0,0,"no","OS05G0558501","Os05g0558101 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WR04]","Conserved hypothetical protein. (Os05t0558501-00)",5,27790142,27791094]
["OS05T0567900-00","NA","NA",-0.487231219139775,"OS05G0567900",null,2.06838197371734,2.06595503321234,1.95788697913732,0.9915197250358341,"no","OS05G0567900","Os05g0567900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WQZ5]","Hypothetical conserved gene. (Os05t0567900-00)",5,28271813,28272705,"GO:0003700;GO:0043565;GO:0006355;GO:0008270","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;zinc ion binding","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS05T0575800-01","NA","NA","NA","OS05G0575800",null,0,0,0,0,"no","OS05G0575800","Os05g0575800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WR75]","Hypothetical conserved gene. (Os05t0575800-01)",5,28683365,28684648]
["OS05T0586300-00","NA","NA","Inf","OS05G0586300",null,0,0,0,1.00066934810281,"no","OS05G0586300","Transcription factor FAMA [Source:Projected from Arabidopsis thaliana (AT3G24140) UniProtKB/Swiss-Prot;Acc:Q56YJ8]","Similar to FMA (FAMA); DNA binding / transcription activator/ transcription factor. (Os05t0586300-00)",5,29208375,29210085,"GO:0046983;GO:0010052;GO:0010377;GO:0010444;GO:0045597;GO:0045893;GO:0051782;GO:0061086;GO:0005634","protein dimerization activity;guard cell differentiation;guard cell fate commitment;guard mother cell differentiation;positive regulation of cell differentiation;positive regulation of transcription, DNA-templated;negative regulation of cell division;negative regulation of histone H3-K27 methylation;nucleus","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a guard mother cell acquires the specialized features of a guard cell. [GOC:expert_db, GOC:tb];The process in which the developmental fate of a cell becomes restricted such that it will develop into a stomatal guard cell. Guard cells are located in the leaf epidermis and pairwise surround stomatal pores, which allow CO2 influx for photosynthetic carbon fixation and water loss via transpiration to the atmosphere. [PMID:17259259];The process in which a meristemoid acquires the specialized features of a guard mother cell. [GOC:expert_db, GOC:tb];Any process that activates or increases the frequency, rate or extent of cell differentiation. [GOC:go_curators];Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any process that stops, prevents, or reduces the frequency, rate or extent of cell division. [GOC:ai];Any process that decreases the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. [GOC:dph, GOC:tb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS05T0592800-03","NA","NA","NA","OS05G0592800",null,0,0,0,0,"no","OS05G0592800","Probable protein phosphatase 2C 53 [Source:UniProtKB/Swiss-Prot;Acc:Q6L4R7]","Splicing variant of protein phosphatase 2C 53 (Os05t0592800-01);Clade A type 2C protein phosphatase, ABA signaling, Regulation of root development, Drought resistance (Os05t0592800-02);Similar to Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 2). (Os05t0592800-03)",5,29538446,29542019,"GO:0004721;GO:0043169;GO:0006470;GO:0004722;GO:0046872;GO:0016787;GO:0003824","phosphoprotein phosphatase activity;cation binding;protein dephosphorylation;protein serine/threonine phosphatase activity;metal ion binding;hydrolase activity;catalytic activity","Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. [EC:3.1.3.16, ISBN:0198547684];Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. [GOC:jl];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. [GOC:bf];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS05T0596200-01","NA","NA","NA","OS05G0596200",null,0,0,0,0,"no","OS05G0596200","Os05g0596200 protein [Source:UniProtKB/TrEMBL;Acc:Q5TKF1]","Similar to cDNA clone:001-104-D04, full insert sequence. (Os05t0596200-01);Similar to predicted protein. (Os05t0596200-02);Similar to cDNA clone:001-104-D04, full insert sequence. (Os05t0596200-03)",5,29693028,29694622]
["OS06T0114900-01","NA","NA","NA","OS06G0114900",null,0,0,0,0,"no","OS06G0114900","Os06g0114900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WS47]","Conserved hypothetical protein. (Os06t0114900-01)",6,846526,847085]
["OS06T0118150-00","NA","NA","NA","OS06G0118150",null,0,0,0,0,"no","OS06G0118150","Os06g0118150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KLF4]","Similar to OSIGBa0106P14.9 protein. (Os06t0118150-00)",6,988961,989263,"GO:0003677","DNA binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS06T0122200-01","NA","NA","NA","OS06G0122200",null,0,0,0,0,"no","OS06G0122200","Os06g0122200 protein [Source:UniProtKB/TrEMBL;Acc:Q5VQD3]","Protein of unknown function DUF594 domain containing protein. (Os06t0122200-01)",6,1172581,1175250,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0131800-00","NA","NA","NA","OS06G0131800",null,0,0,0,0,"no","OS06G0131800","Os06g0131800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WRY6]","Hypothetical protein. (Os06t0131800-00)",6,1701945,1702546,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0133300-00","NA","NA",1.50835597704291,"OS06G0133300",null,0,1.02933026341046,1.95141013349393,0.9768869497833491,"no","OS06G0133300","Os06g0133300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WRW0]","Hypothetical conserved gene. (Os06t0133300-00)",6,1780570,1780854]
["OS06T0144900-01","NA","NA","NA","OS06G0144900",null,0,0,0,0,"no","OS06G0144900","Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WS98]","Pectate lyase/Amb allergen domain containing protein. (Os06t0144900-01)",6,2372992,2374946,"GO:0030570;GO:0045490;GO:0046872;GO:0016829","pectate lyase activity;pectin catabolic process;metal ion binding;lyase activity","Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. [EC:4.2.2.2];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS06T0153900-01","NA","NA","NA","OS06G0153900",null,0,0,0,0,"no","OS06G0153900","Os06g0153900 protein [Source:UniProtKB/TrEMBL;Acc:B7E650]","Similar to Thiol methyltransferase 2. (Os06t0153900-01);Similar to Thiol methyltransferase 2. (Os06t0153900-02)",6,2774451,2779879,"GO:0008757;GO:0032259;GO:0016740","S-adenosylmethionine-dependent methyltransferase activity;methylation;transferase activity","Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0161900-01","NA","NA",0.9289954816495941,"OS06G0161900",null,2.03850783885231,3.08799079023137,6.82993546722877,2.93066084935005,"no","OS06G0161900","Os06g0161900 protein [Source:UniProtKB/TrEMBL;Acc:Q5WA97]","Protein of unknown function DUF569 family protein. (Os06t0161900-01)",6,3131221,3134226]
["OS06T0173450-00","NA","NA","NA","OS06G0173450",null,0,0,0,0,"no","OS06G0173450","Os06g0173450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WTG4]","Hypothetical protein. (Os06t0173450-00)",6,3692016,3693281]
["OS06T0184200-00","NA","NA","NA","OS06G0184200",null,0,0,0,0,"no","OS06G0184200","Os06g0184200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WT90]","Hypothetical conserved gene. (Os06t0184200-00)",6,4205532,4207141]
["OS06T0187500-00","NA","NA","-Inf","OS06G0187500",null,3.05776175827846,1.02933026341046,0,0,"no","OS06G0187500","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q69KM1]","Hypothetical conserved gene. (Os06t0187500-00)",6,4418788,4420340,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0196900-02","NA","NA","NA","OS06G0196900",null,0,0,0,0,"no","OS06G0196900","Chaperonin [Source:UniProtKB/TrEMBL;Acc:Q69Y99]","Similar to Chaperonin. (Os06t0196900-01);Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20). (Os06t0196900-02);Similar to Chaperonin. (Os06t0196900-03)",6,4933950,4938469,"GO:0051087;GO:0051082;GO:0009507;GO:1901671;GO:0046914;GO:0006457;GO:0005737;GO:0005524;GO:0005759;GO:0046872;GO:0006986;GO:0051085","chaperone binding;unfolded protein binding;chloroplast;positive regulation of superoxide dismutase activity;transition metal ion binding;protein folding;cytoplasm;ATP binding;mitochondrial matrix;metal ion binding;response to unfolded protein;chaperone mediated protein folding requiring cofactor","Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. [http://www.onelook.com];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:jl];The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release. [GOC:rb]"]
["OS06T0207966-00","NA","NA","-Inf","OS06G0207966",null,1.01925391942615,0,0,0,"no","OS06G0207966","Os06g0207966 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WUD5]","Similar to Homeobox-leucine zipper protein ROC8. (Os06t0207966-00)",6,5499342,5500323]
["OS06T0216350-00","NA","NA","Inf","OS06G0216350",null,0,0,0,8.15952097660611,"no","OS06G0216350","Os06g0216350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WUA8]","Hypothetical protein. (Os06t0216350-00)",6,5918360,5919539]
["OS06T0230000-01","NA","NA",-0.8039093204619191,"OS06G0230000",null,3.05776175827846,2.05866052682091,0,2.93066084935005,"no","OS06G0230000","Os06g0230000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WU90]","Hypothetical conserved gene. (Os06t0230000-01)",6,6754294,6755540]
["OS06T0240800-00","NA","NA","NA","OS06G0240800",null,0,0,0,0,"no","OS06G0240800","Os06g0240800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WUH8]","Similar to OSIGBa0132I10.2 protein. (Os06t0240800-00)",6,7306160,7307551,"GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740","O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity","Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0241100-01","NA","NA",-0.808494283329513,"OS06G0241100",null,2.03850783885231,3.08799079023137,2.9271152002409,0,"no","OS06G0241100","Os06g0241100 protein [Source:UniProtKB/TrEMBL;Acc:Q67VH6]","Protein kinase, core domain containing protein. (Os06t0241100-01)",6,7325616,7327449,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0254200-00","NA","NA","NA","OS06G0254200",null,0,0,0,0,"no","OS06G0254200","Os06g0254200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WV47]","Similar to Potassium channel protein NKT5. (Os06t0254200-00)",6,7982027,7983859,"GO:0005249;GO:0042391;GO:0005887;GO:0071805;GO:0006813;GO:0006811;GO:0034220;GO:0005216;GO:0006810;GO:0055085;GO:0034765;GO:0005267;GO:0005244;GO:0016020;GO:0016021","voltage-gated potassium channel activity;regulation of membrane potential;integral component of plasma membrane;potassium ion transmembrane transport;potassium ion transport;ion transport;ion transmembrane transport;ion channel activity;transport;transmembrane transport;regulation of ion transmembrane transport;potassium channel activity;voltage-gated ion channel activity;membrane;integral component of membrane","Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, ISBN:0815340729];Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. [GOC:jl, GOC:mtg_cardio, GOC:tb, ISBN:0198506732];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). [GOC:cy, GOC:mtg_transport, GOC:pr, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. [GOC:mah];Enables the facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. [GOC:BHF, GOC:mtg_transport, GOC:pr, ISBN:0815340729];Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0267400-00","NA","NA","NA","OS06G0267400",null,0,0,0,0,"no","OS06G0267400","Os06g0267400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WUZ0]","Similar to Cytochrome P450. (Os06t0267400-00)",6,8876051,8877757,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS06T0285100-00","NA","NA","NA","OS06G0285100",null,0,0,0,0,"no","OS06G0285100","Os06g0285100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVU8]","Similar to endosperm specific protein1. (Os06t0285100-00)",6,10131033,10131804]
["OS06T0296750-00","NA","NA","Inf","OS06G0296750",null,0,0,3.51363960329759,0,"no","OS06G0296750","Os06g0296750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVG4]","Hypothetical protein. (Os06t0296750-00)",6,10958499,10960634]
["OS06T0306500-00","NA","NA","NA","OS06G0306500",null,0,0,0,0,"no","OS06G0306500","Os06g0306500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WW44]","Similar to aspartic proteinase nepenthesin-2. (Os06t0306500-00)",6,11575998,11584432,"GO:0030163;GO:0006508;GO:0004190;GO:0003677;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;DNA binding;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS06T0309400-00","NA","NA","NA","OS06G0309400",null,0,0,0,0,"no","OS06G0309400","Os06g0309400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVR3]","Similar to OSIGBa0076I14.10 protein. (Os06t0309400-00)",6,11744988,11745940]
["OS06T0319850-00","NA","NA","-Inf","OS06G0319850",null,5.09626959713077,1.02933026341046,0,0,"no","OS06G0319850","Os06g0319850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WVY2]","Hypothetical gene. (Os06t0319850-00)",6,12426288,12426886,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0336350-00","NA","NA",-1.06716042393483,"OS06G0336350",null,4.07701567770462,2.05866052682091,1.95141013349393,0.9768869497833491,"no","OS06G0336350","Os06g0336350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WW65]","Conserved hypothetical protein. (Os06t0336350-00)",6,13412111,13412717]
["OS06T0360500-01","NA","NA",0.924557571990385,"OS06G0360500",null,0,1.02933026341046,0,1.9537738995667,"no","OS06G0360500","Os06g0360500 protein [Source:UniProtKB/TrEMBL;Acc:Q0DCA5]","Hypothetical protein. (Os06t0360500-01)",6,14892181,14893612]
["OS06T0475800-00","NA","NA","NA","OS06G0475800",null,0,0,0,0,"no","OS06G0475800","Os06g0475800 protein [Source:UniProtKB/TrEMBL;Acc:Q69Y32]","Hypothetical conserved gene. (Os06t0475800-00)",6,15995581,15996006,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS06T0476500-00","NA","NA","NA","OS06G0476500",null,0,0,0,0,"no","OS06G0476500","Os06g0476500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WWV3]","Hypothetical conserved gene. (Os06t0476500-00)",6,16048709,16049494]
["OS06T0490700-02","NA","NA",-0.23796175264811603,"OS06G0490700",null,3.73693483552945,2.40110502764515,3.90282026698787,1.30188425703426,"no","OS06G0490700","Os06g0490700 protein [Source:UniProtKB/TrEMBL;Acc:Q0DC33]","Conserved hypothetical protein. (Os06t0490700-01);Hypothetical conserved gene. (Os06t0490700-02)",6,16910985,16916624]
["OS06T0499500-01","NA","NA","-Inf","OS06G0499500","GH3.7",0,33.3286884499293,0,0,"no","OS06G0499500","Probable indole-3-acetic acid-amido synthetase GH3.7 [Source:UniProtKB/Swiss-Prot;Acc:Q654M1]","Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17). (Os06t0499500-01);Similar to GH3.17; indole-3-acetic acid amido synthetase. (Os06t0499500-02);Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17). (Os06t0499500-03)",6,17586900,17590657,"GO:0009416;GO:0009733;GO:0016874;","response to light stimulus;response to auxin;ligase activity;","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, ISBN:0582227089];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl];Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];"]
["OS06T0521500-01","NA","NA","Inf","OS06G0521500",null,0,0,0,1.8615474777095302E-4,"no","OS06G0521500","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5Z9B2]","Haem peroxidase family protein. (Os06t0521500-01);Haem peroxidase family protein. (Os06t0521500-02)",6,19205574,19207119,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS06T0535900-01","NA","NA","NA","OS06G0535900",null,0,0,0,0,"no","OS06G0535900","Os06g0535900 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z5E8]","Arbuscular mycorrhizal specific marker 29. (Os06t0535900-01)",6,20064591,20065169,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0547100-00","NA","NA",-1.03342363200244,"OS06G0547100",null,1.04049073298587,1.04347784155628,1.01812160676035,0,"no","OS06G0547100","Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q5Z7J7]","Similar to peroxidase 52. (Os06t0547100-00)",6,20690576,20691745,"GO:0042744;GO:0006979;GO:0020037;GO:0004601;GO:0055114;GO:0046872;GO:0016491;GO:0098869;GO:0005576","hydrogen peroxide catabolic process;response to oxidative stress;heme binding;peroxidase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;cellular oxidant detoxification;extracellular region","The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS06T0548500-01","NA","NA",-1.07544242800962,"OS06G0548500",null,0,2.05866052682091,0,0.9768869497833491,"no","OS06G0548500","Os06g0548500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WXS9]","Conserved hypothetical protein. (Os06t0548500-01)",6,20760706,20761602]
["OS06T0555101-00","NA","NA",-0.0692366415222794,"OS06G0555101",null,1.01925391942615,1.02933026341046,0.9757050667469671,0.9768869497833491,"no","OS06G0555101","Os06g0555101 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KM98]","Hypothetical gene. (Os06t0555101-00)",6,21122083,21126059]
["OS06T0572000-01","NA","NA","NA","OS06G0572000",null,0,0,0,0,"no","OS06G0572000","Os06g0572000 protein [Source:UniProtKB/TrEMBL;Acc:Q0DBE1]","Hypothetical protein. (Os06t0572000-01)",6,22183203,22185176]
["OS06T0589950-00","NA","NA","NA","OS06G0589950",null,0,0,0,0,"no","OS06G0589950","Os06g0589950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WYI4]","Hypothetical protein. (Os06t0589950-00)",6,23147360,23148493]
["OS06T0601600-00","NA","NA",1.50922913684161,"OS06G0601600",null,0,2.05866052682091,0.9757050667469671,4.88443474891674,"no","OS06G0601600","Os06g0601600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WYX4]","Cellulose synthase domain containing protein. (Os06t0601600-00)",6,23777893,23780396,"GO:0030244;GO:0009833;GO:0016759;GO:0005794;GO:0005886;GO:0016760;GO:0016757;GO:0016020;GO:0016021;GO:0071555;GO:0016740","cellulose biosynthetic process;plant-type primary cell wall biogenesis;cellulose synthase activity;Golgi apparatus;plasma membrane;cellulose synthase (UDP-forming) activity;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;cell wall organization;transferase activity","The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];Catalysis of the reaction: nucleoside-disphosphate-glucose + ((1,4)-beta-D-glucosyl)(n) = nucleoside-disphosphate + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12, EC:2.4.1.29];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0611900-02","NA","NA","NA","OS06G0611900",null,0,0,0,0,"no","OS06G0611900","Os06g0611900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WYZ5]","Similar to Glycine decarboxylase P subunit. (Os06t0611900-01);Similar to Victorin binding protein. (Os06t0611900-02)",6,24399546,24404035,"GO:0005739;GO:0006546;GO:0004375;GO:0055114;GO:0003824;GO:0016491;GO:0006544","mitochondrion;glycine catabolic process;glycine dehydrogenase (decarboxylating) activity;oxidation-reduction process;catalytic activity;oxidoreductase activity;glycine metabolic process","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. [GOC:go_curators];Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2. [EC:1.4.4.2];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving glycine, aminoethanoic acid. [GOC:go_curators]"]
["OS06T0623200-01","NA","NA","NA","OS06G0623200",null,0,0,0,0,"no","OS06G0623200","Os06g0623200 protein [Source:UniProtKB/TrEMBL;Acc:C7J4E7]","Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44). (Os06t0623200-01)",6,25066390,25071028,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS06T0627500-01","NA","NA","-Inf","OS06G0627500",null,0,1.02933026341046,0,0,"no","OS06G0627500","Leucine-rich repeat protein-like [Source:UniProtKB/TrEMBL;Acc:Q67VV7]","Leucine-rich repeat, plant specific containing protein. (Os06t0627500-01)",6,25347186,25348647,"GO:0009860;GO:0016324","pollen tube growth;apical plasma membrane","Growth of pollen via tip extension of the intine wall. [ISBN:00943088399];The region of the plasma membrane located at the apical end of the cell. [GOC:curators]"]
["OS06T0639100-01","NA","NA","-Inf","OS06G0639100",null,1.03865643829632,0,0,0,"no","OS06G0639100","Probable E3 ubiquitin ligase SUD1 [Source:Projected from Arabidopsis thaliana (AT4G34100) UniProtKB/Swiss-Prot;Acc:F4JKK0]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0639100-01);Similar to protein binding / zinc ion binding. (Os06t0639100-02);Similar to protein binding / zinc ion binding. (Os06t0639100-03);Similar to predicted protein. (Os06t0639100-04);Similar to predicted protein. (Os06t0639100-05)",6,25968017,25974644,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0016020;GO:0016021;GO:0030176;GO:1904264;GO:0030433;GO:0046872;GO:0008270;GO:0008299;GO:0009414;GO:0010025;GO:0010143;GO:0010345;GO:0042335;GO:1900490","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;membrane;integral component of membrane;integral component of endoplasmic reticulum membrane;ubiquitin protein ligase activity involved in ERAD pathway;ubiquitin-dependent ERAD pathway;metal ion binding;zinc ion binding;isoprenoid biosynthetic process;response to water deprivation;wax biosynthetic process;cutin biosynthetic process;suberin biosynthetic process;cuticle development;positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];Any ubiquitin protein ligase activity that is involved in the ERAD pathway (the targeting of endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome). [GO_REF:0000061, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:23990462];The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:0943088399];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262];The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:0192800825];Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]"]
["OS06T0646900-01","NA","NA","Inf","OS06G0646900",null,0,0,2.9271152002409,0,"no","OS06G0646900","Os06g0646900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WZB8]","Similar to Homogentisic acid geranylgeranyl transferase. (Os06t0646900-01)",6,26435460,26439235]
["OS06T0659100-00","NA","NA","NA","OS06G0659100","SPL10",0,0,0,0,"no","OS06G0659100","Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q0DAE8]","Similar to Squamosa-promoter binding protein 1. (Os06t0659100-00)",6,27114925,27117096,"GO:0046872;GO:0003677;GO:0005634;GO:0006355;GO:0006351","metal ion binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS06T0660700-01","NA","NA","-Inf","OS06G0660700",null,108.550542418895,0,0,0,"no","OS06G0660700","Ubiquitin-conjugating enzyme E2 22 [Source:Projected from Arabidopsis thaliana (AT5G05080) UniProtKB/Swiss-Prot;Acc:Q9FF66]","Similar to Ubiquitin carrier protein. (Os06t0660700-01);Similar to Ubiquitin carrier protein. (Os06t0660700-02)",6,27219564,27222979,"GO:0006511;GO:0000209;GO:0031625;GO:0061630;GO:0005634;GO:0005737;GO:0005524;GO:0000166","ubiquitin-dependent protein catabolic process;protein polyubiquitination;ubiquitin protein ligase binding;ubiquitin protein ligase activity;nucleus;cytoplasm;ATP binding;nucleotide binding","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators];Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS06T0666500-00","NA","NA",-0.39018149487679304,"OS06G0666500",null,3.05776175827846,2.05866052682091,2.9271152002409,0.9768869497833491,"no","OS06G0666500","Os06g0666500 protein [Source:UniProtKB/TrEMBL;Acc:Q655W3]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0666500-00)",6,27598569,27599476,"GO:0043161;GO:0061630;GO:0016567;GO:0016020;GO:0016021","proteasome-mediated ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;protein ubiquitination;membrane;integral component of membrane","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0678700-02","NA","NA",1.66255736291453,"OS06G0678700",null,2.70309196785154,0,3.6729381584251097,4.88443474891674,"no","OS06G0678700","LvsC-like [Source:UniProtKB/TrEMBL;Acc:Q655H7]","Conserved hypothetical protein. (Os06t0678700-01);Hypothetical gene. (Os06t0678700-02);Hypothetical conserved gene. (Os06t0678700-03)",6,28224707,28234193]
["OS06T0686400-01","NA","NA","NA","OS06G0686400",null,0,0,0,0,"no","OS06G0686400","Os06g0686400 protein [Source:UniProtKB/TrEMBL;Acc:Q653H4]","Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein. (Os06t0686400-01);Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein. (Os06t0686400-02)",6,28617447,28620310,"GO:0005759;GO:0008237;GO:0046872;GO:0004222;GO:0006508;GO:0016787;GO:0008233;GO:0016020;GO:0016021;GO:0006627;","mitochondrial matrix;metallopeptidase activity;metal ion binding;metalloendopeptidase activity;proteolysis;hydrolase activity;peptidase activity;membrane;integral component of membrane;protein processing involved in protein targeting to mitochondrion;","The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. [GOC:as, ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The cleavage of peptide bonds in proteins, usually near the N terminus, contributing to the process of import into the mitochondrion. Several different peptidases mediate cleavage of proteins destined for different mitochondrial compartments. [GOC:mcc, PMID:12191769];"]
["OS06T0697000-01","NA","NA","Inf","OS06G0697000",null,0,0,1.53293272964597e-05,1.08242134243147,"no","OS06G0697000","Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q5Z6G7]","Similar to Xyloglucan endo-transglucosylase/hydrolase 1. (Os06t0697000-01);Similar to Xyloglucan endo-transglucosylase/hydrolase 1. (Os06t0697000-02)",6,29156457,29157883,"GO:0005618;GO:0010411;GO:0008152;GO:0006073;GO:0016798;GO:0016762;GO:0048046;GO:0042546;GO:0004553;GO:0005975;GO:0016787;GO:0005576;GO:0071555;GO:0016740","cell wall;xyloglucan metabolic process;metabolic process;cellular glucan metabolic process;hydrolase activity, acting on glycosyl bonds;xyloglucan:xyloglucosyl transferase activity;apoplast;cell wall biogenesis;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization;transferase activity","The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:tair_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell. [ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. [EC:2.4.1.207, GOC:ask, PMID:1400418, PMID:1554366];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:0198506732];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0705901-00","NA","NA","Inf","OS06G0705901",null,0,0,0,28.9278407508332,"no","OS06G0705901","Os06g0705901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0Z4]","Hypothetical protein. (Os06t0705901-00)",6,29824636,29826498]
["OS06T0718000-00","NA","NA","NA","OS06G0718000",null,0,0,0,0,"no","OS06G0718000","Os06g0718000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X145]","Hypothetical protein. (Os06t0718000-00)",6,30509421,30512230]
["OS06T0720500-03","NA","NA","-Inf","OS06G0720500",null,0,29.4026448354229,0,0,"no","OS06G0720500","Os06g0720500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X196]","Similar to Class III homeodomain-leucine zipper protein. (Os06t0720500-01);Similar to CORONA. (Os06t0720500-02);Similar to CORONA. (Os06t0720500-03)",6,30604118,30610503,"GO:0008289","lipid binding","Interacting selectively and non-covalently with a lipid. [GOC:ai]"]
["OS07T0102150-00","NA","NA","Inf","OS07G0102150",null,0,0,1.62123045188867,0,"no","OS07G0102150","Os07g0102150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X1R7]","Hypothetical protein. (Os07t0102150-00)",7,126296,127477]
["OS07T0111900-00","NA","NA","NA","OS07G0111900",null,0,0,0,0,"no","OS07G0111900","Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:Q8GRN5]","Flavin-containing monooxygenase FMO family protein. (Os07t0111900-00)",7,673173,674603,"GO:0004497;GO:0055114;GO:0004499;GO:0050661;GO:0003993;GO:0016311;GO:0050660;GO:0046872;GO:0016787;GO:0016491","monooxygenase activity;oxidation-reduction process;N,N-dimethylaniline monooxygenase activity;NADP binding;acid phosphatase activity;dephosphorylation;flavin adenine dinucleotide binding;metal ion binding;hydrolase activity;oxidoreductase activity","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. [EC:1.14.13.8];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS07T0124725-00","NA","NA","-Inf","OS07G0124725",null,1.77795531237058,0,0,0,"no","OS07G0124725","Os07g0124725 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X242]","Hypothetical protein. (Os07t0124725-00)",7,1303190,1303790]
["OS07T0134101-00","NA","NA","-Inf","OS07G0134101",null,8.22840993640012,0,0,0,"no","OS07G0134101","Os07g0134101 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X247]","Hypothetical protein. (Os07t0134101-00)",7,1789196,1794234]
["OS07T0136800-01","NA","NA","NA","OS07G0136800",null,0,0,0,0,"no","OS07G0136800","Os07g0136800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X2K8]","Homeodomain-like containing protein. (Os07t0136800-01);Similar to Cytochrome P450 90D2. (Os07t0136800-02)",7,1944420,1960442,"GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS07T0149300-00","NA","NA","Inf","OS07G0149300",null,0,0,0.9757050667469671,0.9768869497833491,"no","OS07G0149300","Os07g0149300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZLQ6]","Conserved hypothetical protein. (Os07t0149300-00)",7,2569534,2570553,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0160800-00","NA","NA","NA","OS07G0160800",null,0,0,0,0,"no","OS07G0160800",null,"Hypothetical protein. (Os07t0160800-00)",7,3258380,3261811]
["OS07T0177000-00","NA","NA","NA","OS07G0177000",null,0,0,0,0,"no","OS07G0177000","Os07g0177000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3G7]","Protein of unknown function DUF295 domain containing protein. (Os07t0177000-00)",7,4071947,4076070]
["OS07T0188700-03","NA","NA","NA","OS07G0188700",null,0,0,0,0,"no","OS07G0188700","Os07g0188700 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z4E7]","Similar to EXO. (Os07t0188700-01);Similar to oxidoreductase. (Os07t0188700-02);Hypothetical conserved gene. (Os07t0188700-03)",7,4729466,4733531,"GO:0016740","transferase activity","Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0203500-01","NA","NA","NA","OS07G0203500",null,0,0,0,0,"no","OS07G0203500","Os07g0203500 protein [Source:UniProtKB/TrEMBL;Acc:Q7XB73]","Conserved hypothetical protein. (Os07t0203500-01)",7,5565331,5566233]
["OS07T0206650-00","NA","NA",-1.03525477490523,"OS07G0206650",null,1.96698124801539,0,0,0.9597485822432921,"no","OS07G0206650","Os07g0206650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3P4]","Hypothetical gene. (Os07t0206650-00)",7,5747552,5749325]
["OS07T0217800-01","NA","NA",-0.0816545722299479,"OS07G0217800",null,1.08872876761737,0,0,1.02881958479135,"no","OS07G0217800","Os07g0217800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X3W6]","Conserved hypothetical protein. (Os07t0217800-01)",7,6502506,6503819]
["OS07T0236700-01","NA","NA",2.74024401154511,"OS07G0236700",null,1.02530437799877,1.02933026341046,10.7980655180208,2.93066084935005,"no","OS07G0236700","Os07g0236700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X462]","Zinc finger, Dof-type domain containing protein. (Os07t0236700-01)",7,7604107,7605638,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS07T0248350-00","NA","NA","NA","OS07G0248350",null,0,0,0,0,"no","OS07G0248350","Os07g0248350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X469]","Similar to Tasselseed2-like short-chain dehydrogenase/reductase (Fragment). (Os07t0248350-00)",7,8240431,8241373]
["OS07T0264000-03","NA","NA","NA","OS07G0264000",null,0,0,0,0,"no","OS07G0264000","Os07g0264000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X4I9]","Conserved hypothetical protein. (Os07t0264000-01);Conserved hypothetical protein. (Os07t0264000-02);Conserved hypothetical protein. (Os07t0264000-03);Conserved hypothetical protein. (Os07t0264000-04)",7,9344631,9349461]
["OS07T0276050-00","NA","NA","NA","OS07G0276050",null,0,0,0,0,"no","OS07G0276050","Os07g0276050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X562]","Hypothetical protein. (Os07t0276050-00)",7,10312102,10312750]
["OS07T0277000-00","NA","NA","NA","OS07G0277000",null,0,0,0,0,"no","OS07G0277000","Os07g0277000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X4P3]","FBD domain containing protein. (Os07t0277000-00)",7,10353058,10354344,"GO:0016829","lyase activity","Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS07T0292100-00","NA","NA","NA","OS07G0292100",null,0,0,0,0,"no","OS07G0292100","Os07g0292100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X5B5]","Similar to CYP71B6 (CYTOCHROME P450 71B6); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding. (Os07t0292100-00)",7,11340607,11341017,"GO:0016705;GO:0005506;GO:0055114;GO:0020037;GO:0016020;GO:0016021","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding;membrane;integral component of membrane","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0414900-01","NA","NA","Inf","OS07G0414900",null,0,0,1.15115587955326,0,"no","OS07G0414900","Os07g0414900 protein [Source:UniProtKB/TrEMBL;Acc:Q0D700]","Similar to Transposable element Ac. (Os07t0414900-01);Similar to Transposase (Fragment). (Os07t0414900-02)",7,13079421,13084590,"GO:0046983;GO:0003676;GO:0003677","protein dimerization activity;nucleic acid binding;DNA binding","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS07T0434300-00","NA","NA","NA","OS07G0434300",null,0,0,0,0,"no","OS07G0434300","Myb-like transcription factor-like [Source:UniProtKB/TrEMBL;Acc:Q6Z3W3]","Similar to Myb-like DNA-binding domain containing protein. (Os07t0434300-00)",7,14502054,14502650,"GO:0006412;GO:0022627;GO:0003735;GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0005840;GO:0005622;GO:0003677","translation;cytosolic small ribosomal subunit;structural constituent of ribosome;cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;ribosome;intracellular;DNA binding","The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The small subunit of a ribosome located in the cytosol. [GOC:mtg_sensu];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS07T0457400-01","NA","NA",-0.06299647936696749,"OS07G0457400",null,1.01925391942615,0,0.9757050667469671,0,"no","OS07G0457400","Os07g0457400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X5Q6]","Hypothetical conserved gene. (Os07t0457400-01)",7,15918969,15922849]
["OS07T0477250-00","NA","NA","NA","OS07G0477250",null,0,0,0,0,"no","OS07G0477250","Os07g0477250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X5U4]","Similar to S-adenosylmethionine synthetase 2. (Os07t0477250-00)",7,17276190,17276684,"GO:0006556;GO:0004478;GO:0003899;GO:0006351;GO:0005524","S-adenosylmethionine biosynthetic process;methionine adenosyltransferase activity;DNA-directed 5'-3' RNA polymerase activity;transcription, DNA-templated;ATP binding","The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. [GOC:go_curators, ISBN:0198506732];Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine. [EC:2.5.1.6];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS07T0482433-00","NA","NA","NA","OS07G0482433",null,0,0,0,0,"no","OS07G0482433","Os07g0482433 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6Q8]","Conserved hypothetical protein. (Os07t0482433-00)",7,17619784,17620080,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0493100-01","NA","NA","-Inf","OS07G0493100",null,1.01925391942615,0,0,0,"no","OS07G0493100","Os07g0493100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6M2]","Hypothetical gene. (Os07t0493100-01)",7,18412069,18414214]
["OS07T0503200-02","NA","NA",1.20972304436211,"OS07G0503200",null,2.35869852531824,0,1.8495247214203,3.60598530548653,"no","OS07G0503200","Os07g0503200 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z480]","Hypothetical protein. (Os07t0503200-01);Hypothetical protein. (Os07t0503200-02);Hypothetical protein. (Os07t0503200-03)",7,19037737,19039570]
["OS07T0513150-00","NA","NA","NA","OS07G0513150",null,0,0,0,0,"no","OS07G0513150","Os07g0513150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6P9]","Hypothetical protein. (Os07t0513150-00)",7,19658521,19668078]
["OS07T0524400-00","NA","NA","-Inf","OS07G0524400",null,1.01925391942615,0,0,0,"no","OS07G0524400","Os07g0524400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X6J5]","Similar to harpin-induced protein. (Os07t0524400-00)",7,20351018,20351590,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0526700-01","NA","NA",0.6746516754233041,"OS07G0526700",null,0,5.42175710803975,3.8127502287393398,4.8415199314255,"no","OS07G0526700","Os07g0526700 protein [Source:UniProtKB/TrEMBL;Acc:C7J4N2]","Conserved hypothetical protein. (Os07t0526700-01)",7,20535857,20536812]
["OS07T0534600-00","NA","NA","NA","OS07G0534600",null,0,0,0,0,"no","OS07G0534600","Os07g0534600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X761]","Hypothetical protein. (Os07t0534600-00)",7,20969976,20970886]
["OS07T0545001-00","NA","NA",1.2818456934393199,"OS07G0545001",null,0,1.44847093362519,0,3.52195488254648,"no","OS07G0545001","Os07g0545001 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7L1]","Hypothetical gene. (Os07t0545001-00)",7,21582777,21583838]
["OS07T0555000-01","NA","NA",1.50952007271154,"OS07G0555000",null,0,1.02933026341046,0,2.93066084935005,"no","OS07G0555000","Os07g0555000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X862]","F-box domain, Skp2-like domain containing protein. (Os07t0555000-01)",7,22107689,22110130]
["OS07T0565800-01","NA","NA",-1.06836365784172,"OS07G0565800",null,1.01925391942615,1.02933026341046,0,0.9768869497833491,"no","OS07G0565800","Os07g0565800 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIJ8]","Similar to LLA-115. (Os07t0565800-01)",7,22696014,22696695]
["OS07T0574150-00","NA","NA","NA","OS07G0574150",null,0,0,0,0,"no","OS07G0574150","Os07g0574150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7S4]","Hypothetical protein. (Os07t0574150-00)",7,23209009,23209629]
["OS07T0574900-01","NA","NA","Inf","OS07G0574900",null,0,0,1.95141013349393,0,"no","OS07G0574900","Os07g0574900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X7P7]","Similar to C3H transcription factor. (Os07t0574900-01)",7,23248080,23248647]
["OS07T0582450-00","NA","NA","NA","OS07G0582450",null,0,0,0,0,"no","OS07G0582450","Os07g0582450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNR4]","Hypothetical gene. (Os07t0582450-00)",7,23582354,23583907]
["OS07T0588700-00","NA","NA","NA","OS07G0588700",null,0,0,0,0,"no","OS07G0588700","C2H2-type zinc finger transcription factor [Source:UniProtKB/TrEMBL;Acc:Q84Z14]","Zinc finger, C2H2-type domain containing protein. (Os07t0588700-00)",7,23980540,23981251,"GO:0005634;GO:0003676","nucleus;nucleic acid binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS07T0602000-01","NA","NA",0.46479378461909804,"OS07G0602000",null,3.95397783563083,1.03126957383085,0,6.88023999490643,"no","OS07G0602000","Os07g0602000 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIG2]","Similar to NADPH HC toxin reductase (Fragment). (Os07t0602000-01)",7,24567545,24570285,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS07T0613300-01","NA","NA","NA","OS07G0613300",null,0,0,0,0,"no","OS07G0613300","Exportin-T [Source:UniProtKB/Swiss-Prot;Acc:Q8H3A7]","Similar to PAUSED. (Os07t0613300-01);Similar to PAUSED. (Os07t0613300-02);Similar to predicted protein. (Os07t0613300-03)",7,25239766,25247925,"GO:0000049;GO:0008536;GO:0005643;GO:0005737;GO:0008033;GO:0003723;GO:0006810;GO:0005634;GO:0071528;GO:0016363;GO:0005487;GO:0006409;GO:0009908;GO:0010014;GO:0005829","tRNA binding;Ran GTPase binding;nuclear pore;cytoplasm;tRNA processing;RNA binding;transport;nucleus;tRNA re-export from nucleus;nuclear matrix;nucleocytoplasmic transporter activity;tRNA export from nucleus;flower development;meristem initiation;cytosol","Interacting selectively and non-covalently with transfer RNA. [GOC:ai];Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. [GOC:rn, PMID:12787777, PMID:14726649];Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. [ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The directed movement from the nucleus to the cytoplasm of a tRNA that was previously exported to the cytoplasm and then imported back into the nucleus. The processes of primary tRNA export and secondary export (re-export) can be distinguished because in organisms in which tRNA splicing occurs in the cytoplasm, the export of a mature tRNA must occur by re-export. [GOC:mcc, PMID:17475781, PMID:20032305];The dense fibrillar network lying on the inner side of the nuclear membrane. [ISBN:0582227089];Enables the directed movement of substances between the nucleus and the cytoplasm of a cell. [GOC:ai];The directed movement of tRNA from the nucleus to the cytoplasm. [GOC:ma];The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. [GOC:tb, ISBN:0879015322];Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS07T0627100-01","NA","NA","-Inf","OS07G0627100",null,3.05776175827846,1.02933026341046,0,0,"no","OS07G0627100","Os07g0627100 protein [Source:UniProtKB/TrEMBL;Acc:C7J518]","MULE transposase, conserved domain domain containing protein. (Os07t0627100-01)",7,25986046,25987423,"GO:0042398;GO:0006750;GO:0004357;GO:0006508;GO:0008234;GO:0006355;GO:0003676;GO:0008270","cellular modified amino acid biosynthetic process;glutathione biosynthetic process;glutamate-cysteine ligase activity;proteolysis;cysteine-type peptidase activity;regulation of transcription, DNA-templated;nucleic acid binding;zinc ion binding","The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents. [CHEBI:83821, GOC:ai];The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, GOC:al, GOC:pde, ISBN:0198506732];Catalysis of the reaction: L-cysteine + L-glutamate + ATP = L-gamma-glutamyl-L-cysteine + ADP + 2 H(+) + phosphate. [EC:6.3.2.2, RHEA:13288];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0629900-00","NA","NA","NA","OS07G0629900",null,0,0,0,0,"no","OS07G0629900","Os07g0629900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X972]","Ribonuclease T2 domain containing protein. (Os07t0629900-00)",7,26127624,26128255,"GO:0090502;GO:0033897;GO:0016787;GO:0003723","RNA phosphodiester bond hydrolysis, endonucleolytic;ribonuclease T2 activity;hydrolase activity;RNA binding","The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates. [EC:3.1.27.1];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS07T0656050-00","NA","NA","NA","OS07G0656050",null,0,0,0,0,"no","OS07G0656050","Os07g0656050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9W1]","Hypothetical protein. (Os07t0656050-00)",7,27585104,27585695]
["OS07T0662200-00","NA","NA","NA","OS07G0662200",null,0,0,0,0,"no","OS07G0662200","Os07g0662200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X9S4]","Conserved hypothetical protein. (Os07t0662200-00)",7,27936364,27937218]
["OS07T0668900-02","NA","NA","NA","OS07G0668900",null,0,0,0,0,"no","OS07G0668900","Os07g0668900 protein [Source:UniProtKB/TrEMBL;Acc:Q8H3R0]","Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1). (Os07t0668900-01);Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1). (Os07t0668900-02)",7,28250047,28253655,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0681300-00","NA","NA","-Inf","OS07G0681300","CYP714B1",2.03850783885231,0,0,0,"no","OS07G0681300","Cytochrome P450 714B1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XHW5]","Cytochrome P450 family protein. (Os07t0681300-00)",7,28882173,28886338,"GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021","monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0684850-01","NA","NA","Inf","OS07G0684850",null,0,0,0.9757050667469671,0,"no","OS07G0684850","Os07g0684850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XAB9]","Conserved hypothetical protein. (Os07t0684850-01)",7,29058219,29063467]
["OS07T0694500-01","NA","NA","NA","OS07G0694500",null,0,0,0,0,"no","OS07G0694500","Os07g0694500 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z3Y5]","Similar to PWWP domain containing protein. (Os07t0694500-01);PWWP domain containing protein. (Os07t0694500-02);Similar to PWWP domain containing protein. (Os07t0694500-03)",7,29576587,29579587,"GO:0006355;GO:0003677","regulation of transcription, DNA-templated;DNA binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS08T0111800-00","NA","NA",-1.1644396784383,"OS08G0111800",null,9.17328527483539,3.08799079023137,1.95141013349393,3.51880490861396,"no","OS08G0111800","Os08g0111800 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZCD2]","Transferase family protein. (Os08t0111800-00)",8,632775,634197,"GO:0016747","transferase activity, transferring acyl groups other than amino-acyl groups","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl]"]
["OS08T0121400-00","NA","NA","NA","OS08G0121400",null,0,0,0,0,"no","OS08G0121400","Os08g0121400 protein [Source:UniProtKB/TrEMBL;Acc:Q6YRN2]","Similar to ribosome-like protein. (Os08t0121400-00)",8,1179268,1179715,"GO:0005840;GO:0006412;GO:0003735;GO:0044391","ribosome;translation;structural constituent of ribosome;ribosomal subunit","An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ISBN:0198506732];The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators];The action of a molecule that contributes to the structural integrity of the ribosome. [GOC:mah];Either of the two subunits of a ribosome: the ribosomal large subunit or the ribosomal small subunit. [GOC:jl]"]
["OS08T0125112-00","NA","NA","-Inf","OS08G0125112",null,0,1.21275077115532,0,0,"no","OS08G0125112","Os08g0125112 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBN2]","Hypothetical protein. (Os08t0125112-00)",8,1454214,1456416,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0132100-00","NA","NA","NA","OS08G0132100",null,0,0,0,0,"no","OS08G0132100","Os08g0132100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBZ5]","Hypothetical conserved gene. (Os08t0132100-00)",8,1795779,1801269]
["OS08T0139500-00","NA","NA",-1.5615636503024701,"OS08G0139500",null,7.18501738378577,4.5660523795751,2.54422490065868,1.43684594045733,"no","OS08G0139500","Os08g0139500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XBR6]","Similar to Protein LRP16. (Os08t0139500-00)",8,2203447,2204315]
["OS08T0141700-02","NA","NA","NA","OS08G0141700",null,0,0,0,0,"no","OS08G0141700","Os08g0141700 protein [Source:UniProtKB/TrEMBL;Acc:Q6YZ05]","Pectinesterase inhibitor domain containing protein. (Os08t0141700-02)",8,2322547,2323638,"GO:0043086;GO:0004857","negative regulation of catalytic activity;enzyme inhibitor activity","Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc]"]
["OS08T0161100-00","NA","NA","NA","OS08G0161100",null,0,0,0,0,"no","OS08G0161100","Os08g0161100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XC31]","Similar to stomatin1. (Os08t0161100-00)",8,3575826,3577853,"GO:0016020","membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0169300-00","NA","NA",1.25997976676968,"OS08G0169300",null,2.03850783885231,0,1.95141013349393,2.93066084935005,"no","OS08G0169300","Os08g0169300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XC80]","Similar to Flavonoid 7-O-methyltransferase. (Os08t0169300-00)",8,4053090,4054653,"GO:0019438;GO:0008757;GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740","aromatic compound biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity","The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0180300-03","NA","NA","NA","OS08G0180300",null,0,0,0,0,"no","OS08G0180300","Os08g0180300 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z9U5]","DEAD-like helicase, N-terminal domain containing protein. (Os08t0180300-01);Hypothetical conserved gene. (Os08t0180300-02);DEAD-like helicase, N-terminal domain containing protein. (Os08t0180300-03)",8,4700668,4708354,"GO:0005737;GO:0005524","cytoplasm;ATP binding","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS08T0194000-00","NA","NA","NA","OS08G0194000",null,0,0,0,0,"no","OS08G0194000","Os08g0194000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCK5]","F-box domain, Skp2-like domain containing protein. (Os08t0194000-00)",8,5479726,5481493]
["OS08T0194350-00","NA","NA","-Inf","OS08G0194350",null,0,4.11732105364182,0,0,"no","OS08G0194350","Os08g0194350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPE6]","F-box domain, Skp2-like domain containing protein. (Os08t0194350-00)",8,5517737,5519259]
["OS08T0207401-00","NA","NA",1.5242730902218,"OS08G0207401",null,1.46397548090093,0,1.38655151359086,2.82445317363889,"no","OS08G0207401","Os08g0207401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDA7]","Hypothetical gene. (Os08t0207401-00)",8,6267772,6270409]
["OS08T0220500-00","NA","NA",-1.6226139722075699,"OS08G0220500",null,1.54159266271484,0,0,0.500626872224574,"no","OS08G0220500","Os08g0220500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XD61]","Hypothetical protein. (Os08t0220500-00)",8,7325507,7326193]
["OS08T0235550-01","NA","NA",0.15956800466221602,"OS08G0235550",null,3.16790754082069,2.10694651806478,1.98421432415943,3.9075477991334,"no","OS08G0235550","Os08g0235550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPH8]","Conserved hypothetical protein. (Os08t0235550-01)",8,8224155,8224982]
["OS08T0256300-01","NA","NA",0.38347604827768,"OS08G0256300",null,2.41491181054734,2.18043629690003,3.20660862156968,2.78793615946737,"no","OS08G0256300","Os08g0256300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDJ6]","Similar to OSIGBa0135A16.2 protein. (Os08t0256300-01)",8,9517361,9522020]
["OS08T0274775-00","NA","NA","NA","OS08G0274775",null,0,0,0,0,"no","OS08G0274775","Os08g0274775 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XE35]","Similar to phosphatidylinositol 3-and 4-kinase family protein. (Os08t0274775-00)",8,10569519,10569899,"GO:0016301;GO:0016310","kinase activity;phosphorylation","Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732]"]
["OS08T0278750-01","NA","NA","Inf","OS08G0278750",null,0,0,0.9757050667469671,1.9537738995667,"no","OS08G0278750","Os08g0278750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XDU5]","Similar to nucleotidyltransferase family protein. (Os08t0278750-01)",8,10804531,10805024]
["OS08T0290200-00","NA","NA","NA","OS08G0290200",null,0,0,0,0,"no","OS08G0290200","Os08g0290200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XE09]","Protein of unknown function DUF313 domain containing protein. (Os08t0290200-00)",8,11564027,11565163]
["OS08T0323600-01","NA","NA","NA","OS08G0323600",null,0,0,0,0,"no","OS08G0323600","Ribonuclease E/G-like protein, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G04270) UniProtKB/Swiss-Prot;Acc:F4IV66]","Hypothetical conserved gene. (Os08t0323600-01);Ribonuclease E and G domain containing protein. (Os08t0323600-02);Similar to Ribonuclease E. (Os08t0323600-03)",8,14167790,14178889,"GO:0006364;GO:0004540;GO:0005737;GO:2001070;GO:0090501;GO:0090502;GO:0030246;GO:0006396;GO:0003723;GO:0004521;GO:0009658;GO:0010239;GO:1901259;GO:0009507","rRNA processing;ribonuclease activity;cytoplasm;starch binding;RNA phosphodiester bond hydrolysis;RNA phosphodiester bond hydrolysis, endonucleolytic;carbohydrate binding;RNA processing;RNA binding;endoribonuclease activity;chloroplast organization;chloroplast mRNA processing;chloroplast rRNA processing;chloroplast","Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators];Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA. [GOC:mah, ISBN:0198547684];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with starch. [GOC:mengo_curators];The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. [GOC:mah, ISBN:0198547684];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid];Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs. [GOC:tb, PMID:9648738];Any rRNA processing that takes place in chloroplast. [GOC:TermGenie];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS08T0337001-00","NA","NA",1.7740236170644899,"OS08G0337001",null,1.01925391942615,4.11732105364182,13.6598709344575,3.9075477991334,"no","OS08G0337001","Os08g0337001 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XEQ5]","Hypothetical conserved gene. (Os08t0337001-00)",8,15094723,15098372,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS08T0352250-00","NA","NA","NA","OS08G0352250",null,0,0,0,0,"no","OS08G0352250","Os08g0352250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XEZ3]","Conserved hypothetical protein. (Os08t0352250-00)",8,16073233,16073838]
["OS08T0358800-01","NA","NA","NA","OS08G0358800",null,0,0,0,0,"no","OS08G0358800","Os08g0358800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XEU2]","A-type response regulator, Cytokinin signaling (Os08t0358800-01);A-type response regulator, Cytokinin signaling (Os08t0358800-02)",8,16488474,16490328,"GO:0009736;GO:0000160;GO:0005622;GO:0006355;GO:0006351","cytokinin-activated signaling pathway;phosphorelay signal transduction system;intracellular;regulation of transcription, DNA-templated;transcription, DNA-templated","A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0372166-00","NA","NA",-2.88050308846975,"OS08G0372166",null,2.03850783885231,5.14665131705228,0.9757050667469671,0,"no","OS08G0372166","Os08g0372166 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XF51]","Conserved hypothetical protein. (Os08t0372166-00)",8,17383733,17387736]
["OS08T0379400-01","NA","NA","NA","OS08G0379400",null,0,0,0,0,"no","OS08G0379400","Os08g0379400 protein [Source:UniProtKB/TrEMBL;Acc:Q7EYM8]","Similar to Quinone oxidoreductase-like protein. (Os08t0379400-01);Similar to Quinone oxidoreductase-like protein. (Os08t0379400-02);Similar to Quinone oxidoreductase-like protein. (Os08t0379400-03);Similar to predicted protein. (Os08t0379400-04)",8,17855680,17857615,"GO:0055114;GO:0016491;GO:0008270;GO:0035671;GO:0035798;GO:0009409;GO:0009507;GO:0009570;GO:0009579;GO:0009941;GO:0010319;GO:0048046","oxidation-reduction process;oxidoreductase activity;zinc ion binding;enone reductase activity;2-alkenal reductase (NADP+) activity;response to cold;chloroplast;chloroplast stroma;thylakoid;chloroplast envelope;stromule;apoplast","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: an enone + NADPH + H+ = a ketone + NADP+. [EC:1.3.1.-, GOC:kad, PMID:17945329, PMID:19166903];Catalysis of the reaction: n-alkanal + NADP+ = alk-2-enal + NADPH + H+. [GOC:bf, GOC:kad, PMID:16299173];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];Thin filamentous structure extending from the surface of all plastid types examined so far, including chloroplast, proplastid, etioplast, leucoplast, amyloplast, and chromoplast. In general, stromules are more abundant in tissues containing non-green plastids, and in cells containing smaller plastids. The primary function of stromules is still unresolved, although the presence of stromules markedly increases the plastid surface area, potentially increasing transport to and from the cytosol. Other functions of stromules, such as transfer of macromolecules between plastids and starch granule formation in cereal endosperm, may be restricted to particular tissues and cell types. [PMID:15272881, PMID:15699062, PMID:16582010];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS08T0399050-00","NA","NA",-0.651395254796668,"OS08G0399050",null,4.07701567770462,2.05866052682091,0.9757050667469671,2.93066084935005,"no","OS08G0399050","Os08g0399050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XFI7]","Similar to OSIGBa0096F13.8 protein. (Os08t0399050-00)",8,19033700,19034584,"GO:0009535","chloroplast thylakoid membrane","The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]"]
["OS08T0413100-00","NA","NA",-0.717595494516846,"OS08G0413100",null,2.23736344638751,1.10135674341772,1.02350583244655,1.00680370523436,"no","OS08G0413100","Os08g0413100 protein [Source:UniProtKB/TrEMBL;Acc:Q6Z561]","Protein of unknown function DUF1262 domain containing protein. (Os08t0413100-00)",8,19762998,19764245]
["OS08T0426100-00","NA","NA","NA","OS08G0426100",null,0,0,0,0,"no","OS08G0426100","Os08g0426100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XG45]","Conserved hypothetical protein. (Os08t0426100-00)",8,20480087,20481526]
["OS08T0427550-00","NA","NA","NA","OS08G0427550",null,0,0,0,0,"no","OS08G0427550","Os08g0427550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGU0]","Hypothetical protein. (Os08t0427550-00)",8,20566526,20567096]
["OS08T0437300-00","NA","NA",-0.0364708240206449,"OS08G0437300",null,1.05327279141924,0,0,1.02698015956747,"no","OS08G0437300","Os08g0437300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPX1]","Similar to Typical P-type R2R3 Myb protein (Fragment). (Os08t0437300-00)",8,21240597,21241862,"GO:0030154;GO:0044212;GO:0043565;GO:0001135;GO:0000981;GO:0005634;GO:0006357;GO:0003677","cell differentiation;transcription regulatory region DNA binding;sequence-specific DNA binding;transcription factor activity, RNA polymerase II transcription factor recruiting;RNA polymerase II transcription factor activity, sequence-specific DNA binding;nucleus;regulation of transcription from RNA polymerase II promoter;DNA binding","The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:0198506732];Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors. [GOC:jl, GOC:txnOH, SO:0005836];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II. [GOC:txnOH, PMID:16858867];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS08T0450200-01","NA","NA",-0.6574361058604771,"OS08G0450200",null,1.01925391942615,2.05866052682091,1.95141013349393,0,"no","OS08G0450200","Pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q6ZLF5]","Similar to Pectin methylesterase (Fragment). (Os08t0450200-01)",8,21981611,21984054,"GO:0071944;GO:0046910;GO:0030599;GO:0045490;GO:0042545;GO:0045330;GO:0005618;GO:0043086;GO:0004857;GO:0016787;GO:0016020;GO:0016021","cell periphery;pectinesterase inhibitor activity;pectinesterase activity;pectin catabolic process;cell wall modification;aspartyl esterase activity;cell wall;negative regulation of catalytic activity;enzyme inhibitor activity;hydrolase activity;membrane;integral component of membrane","The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah];Stops, prevents or reduces the activity of any pectinesterase enzyme. [GOC:ai, PMID:10880981];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl];Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. [GOC:mah, UniProtKB-KW:KW-0063];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0466950-00","NA","NA","NA","OS08G0466950",null,0,0,0,0,"no","OS08G0466950","Os08g0466950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XGV3]","Hypothetical conserved gene. (Os08t0466950-00)",8,22927605,22928009]
["OS08T0474100-00","NA","NA",-2.65507265449167,"OS08G0474100",null,3.05776175827846,3.08799079023137,0.9757050667469671,0,"no","OS08G0474100","Os08g0474100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQ04]","Hypothetical conserved gene. (Os08t0474100-00)",8,23376142,23376787]
["OS08T0485800-01","NA","NA","-Inf","OS08G0485800",null,0,1.02933026341046,0,0,"no","OS08G0485800","Os08g0485800 protein [Source:UniProtKB/TrEMBL;Acc:B7F9K7]","Barwin-related endoglucanase domain containing protein. (Os08t0485800-01)",8,24020865,24022693,"GO:0005576","extracellular region","The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS08T0493900-02","NA","NA","NA","OS08G0493900",null,0,0,0,0,"no","OS08G0493900","Elongator complex protein 2 [Source:Projected from Arabidopsis thaliana (AT1G49540) UniProtKB/Swiss-Prot;Acc:F4I1S7]","WD40 repeat-like domain containing protein. (Os08t0493900-01);WD40 repeat-like domain containing protein. (Os08t0493900-02)",8,24384370,24389114,"GO:0016573;GO:0044030;GO:1901535","histone acetylation;regulation of DNA methylation;regulation of DNA demethylation","The modification of a histone by the addition of an acetyl group. [GOC:ai];Any process that modulates the frequency, rate or extent of the covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. [GOC:jl];Any process that modulates the frequency, rate or extent of DNA demethylation. [GOC:TermGenie]"]
["OS08T0501132-00","NA","NA","NA","OS08G0501132",null,0,0,0,0,"no","OS08G0501132","Os08g0501132 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XHL9]","Similar to glycinamide ribonucleotide transformylase. (Os08t0501132-00)",8,24748442,24749814,"GO:0016742;GO:0009058","hydroxymethyl-, formyl- and related transferase activity;biosynthetic process","Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor). [EC:2.1.2, GOC:mah];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684]"]
["OS08T0510500-01","NA","NA","NA","OS08G0510500",null,0,0,0,0,"no","OS08G0510500","Os08g0510500 protein [Source:UniProtKB/TrEMBL;Acc:Q7EXY9]","ENT domain containing protein. (Os08t0510500-01);ENT domain containing protein. (Os08t0510500-02)",8,25321532,25325539,"GO:0050832","defense response to fungus","Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]"]
["OS08T0519000-00","NA","NA",-0.651831812667924,"OS08G0519000",null,2.03850783885231,1.02933026341046,0.9757050667469671,0.9768869497833491,"no","OS08G0519000","Os08g0519000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIZ7]","Hypothetical conserved gene. (Os08t0519000-00)",8,25764973,25765963]
["OS08T0528750-00","NA","NA","NA","OS08G0528750",null,0,0,0,0,"no","OS08G0528750","Os08g0528750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XIK6]","Hypothetical protein. (Os08t0528750-00)",8,26316547,26317815]
["OS08T0536200-00","NA","NA",-1.06124998343817,"OS08G0536200",null,2.03850783885231,0,0,0.9768869497833491,"no","OS08G0536200","CASP-like protein UU-1 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z1G3]","Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os08t0536200-00)",8,26791868,26792452,"GO:0005886;GO:0016020;GO:0016021;GO:0051536","plasma membrane;membrane;integral component of membrane;iron-sulfur cluster binding","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai]"]
["OS08T0540100-01","NA","NA",20.9412982611968,"OS08G0540100",null,7.97726373737696e-05,1.0615199759203102E-5,181.998954959102,1.04337659430576e-05,"no","OS08G0540100","Biotin synthase [Source:Projected from Arabidopsis thaliana (AT2G43360) UniProtKB/Swiss-Prot;Acc:P54967]","Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase). (Os08t0540100-01);Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase). (Os08t0540100-02)",8,27034938,27038838,"GO:0051537;GO:0051539;GO:0051536;GO:0046872;GO:0003824;GO:0004076;GO:0009102;GO:0008270","2 iron, 2 sulfur cluster binding;4 iron, 4 sulfur cluster binding;iron-sulfur cluster binding;metal ion binding;catalytic activity;biotin synthase activity;biotin biosynthetic process;zinc ion binding","Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: 2 S-adenosyl-L-methionine + dethiobiotin + S(2-) = 2 5'-deoxyadenosine + 2 L-methionine + biotin + H(+). [EC:2.8.1.6, RHEA:22063];The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS08T0548600-01","NA","NA","NA","OS08G0548600",null,0,0,0,0,"no","OS08G0548600","Os08g0548600 protein [Source:UniProtKB/TrEMBL;Acc:B9FYG2]","Hypothetical conserved gene. (Os08t0548600-01)",8,27514808,27516115]
["OS08T0555650-00","NA","NA","NA","OS08G0555650",null,0,0,0,0,"no","OS08G0555650","Os08g0555650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJ23]","Hypothetical protein. (Os08t0555650-00)",8,27818497,27818907]
["OS09T0101200-00","NA","NA","Inf","OS09G0101200",null,0,0,1.95141013349393,0,"no","OS09G0101200","Os09g0101200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XJJ7]","Similar to Transposon protein. (Os09t0101200-00)",9,251259,252929,"GO:0005634;GO:0006357;GO:0003700;GO:0000977;GO:0046983;GO:0003676;GO:0003677","nucleus;regulation of transcription from RNA polymerase II promoter;transcription factor activity, sequence-specific DNA binding;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;nucleic acid binding;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS09T0123400-00","NA","NA","NA","OS09G0123400",null,0,0,0,0,"no","OS09G0123400","Os09g0123400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQD2]","Hypothetical conserved gene. (Os09t0123400-00)",9,1811284,1811712]
["OS09T0132200-01","NA","NA","-Inf","OS09G0132200",null,2.03850783885231,3.08799079023137,0,0,"no","OS09G0132200","Os09g0132200 protein [Source:UniProtKB/TrEMBL;Acc:Q0J3C5]","Esterase, SGNH hydrolase-type domain containing protein. (Os09t0132200-01);Similar to anther-specific proline-rich protein APG. (Os09t0132200-02)",9,2458920,2474678,"GO:0016788;GO:0016787","hydrolase activity, acting on ester bonds;hydrolase activity","Catalysis of the hydrolysis of any ester bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS09T0135800-02","NA","NA","-Inf","OS09G0135800",null,1.3452688418663001E-8,0,0,0,"no","OS09G0135800","Os09g0135800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J3B0]","Armadillo-like helical domain containing protein. (Os09t0135800-01);Armadillo-like helical domain containing protein. (Os09t0135800-02)",9,2703216,2707346,"GO:0005634;GO:0005737","nucleus;cytoplasm","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0248100-02","NA","NA","-Inf","OS09G0248100",null,45.2104901152611,0.192681223389906,0,0,"no","OS09G0248100","Os09g0248100 protein [Source:UniProtKB/TrEMBL;Acc:Q6K489]","FAS1 domain domain containing protein. (Os09t0248100-01);FAS1 domain domain containing protein. (Os09t0248100-02);FAS1 domain domain containing protein. (Os09t0248100-03)",9,3654992,3658609]
["OS09T0257000-00","NA","NA","NA","OS09G0257000",null,0,0,0,0,"no","OS09G0257000","Os09g0257000 protein [Source:UniProtKB/TrEMBL;Acc:A3BWK1]","Hypothetical conserved gene. (Os09t0257000-00)",9,4290126,4291301]
["OS09T0268300-01","NA","NA","NA","OS09G0268300",null,0,0,0,0,"no","OS09G0268300","Os09g0268300 protein [Source:UniProtKB/TrEMBL;Acc:Q6H4T6]","Similar to Hexose carrier. (Os09t0268300-01);Similar to Monosaccharide transporter. (Os09t0268300-02)",9,5137891,5142308,"GO:0046323;GO:1904659;GO:0035428;GO:0005355;GO:0005351;GO:0015992;GO:0022891;GO:0022857;GO:0006810;GO:0055085;GO:0005215;GO:0016021;GO:0016020","glucose import;glucose transmembrane transport;hexose transmembrane transport;glucose transmembrane transporter activity;sugar:proton symporter activity;proton transport;substrate-specific transmembrane transporter activity;transmembrane transporter activity;transport;transmembrane transport;transporter activity;integral component of membrane;membrane","The directed movement of the hexose monosaccharide glucose into a cell or organelle. [GOC:ai];The directed movement of glucose across a membrane. [GO_REF:0000069, GOC:TermGenie, PMID:9090050];The directed movement of hexose across a membrane by means of some agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. [GOC:vw];Enables the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). [TC:2.A.1.1.-];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. [GOC:jid, GOC:mtg_transport, ISBN:0815340729];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0278401-00","NA","NA",-1.19886762102775,"OS09G0278401",null,8.04049090599813,0,3.50257505474837,0,"no","OS09G0278401","Os09g0278401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKP0]","Hypothetical protein. (Os09t0278401-00)",9,5801081,5801674]
["OS09T0281850-00","NA","NA",-1.77580345987684,"OS09G0281850",null,0,7.23276065089748,0,2.1121948806344,"no","OS09G0281850","Os09g0281850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKY0]","Hypothetical protein. (Os09t0281850-00)",9,6033956,6035032]
["OS09T0297100-01","NA","NA","Inf","OS09G0297100",null,0,0,0,21.1091778786313,"no","OS09G0297100","Os09g0297100 protein [Source:UniProtKB/TrEMBL;Acc:Q69TB0]","Similar to CROC-1-like protein (Fragment). (Os09t0297100-01);Similar to CROC-1-like protein (Fragment). (Os09t0297100-02)",9,7205157,7208171,"GO:0070534;GO:0006301;GO:0031625;GO:0061630;GO:0005634;GO:0005737","protein K63-linked ubiquitination;postreplication repair;ubiquitin protein ligase binding;ubiquitin protein ligase activity;nucleus;cytoplasm","A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair. [GOC:mah, PMID:15556404];The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. [GOC:elh];Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. [GOC:vp];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0323900-00","NA","NA","Inf","OS09G0323900",null,0,0,0,0.9768869497833491,"no","OS09G0323900","Os09g0323900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KQK4]","Similar to Class III peroxidase 120. (Os09t0323900-00)",9,9492263,9492544,"GO:0098869;GO:0055114;GO:0006979;GO:0020037;GO:0004601","cellular oxidant detoxification;oxidation-reduction process;response to oxidative stress;heme binding;peroxidase activity","Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. [EC:1.11.1.7]"]
["OS09T0339300-00","NA","NA","NA","OS09G0339300",null,0,0,0,0,"no","OS09G0339300","Os09g0339300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLK2]","Protein kinase, catalytic domain domain containing protein. (Os09t0339300-00)",9,10378522,10381850,"GO:0030247;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0353200-00","NA","NA","NA","OS09G0353200",null,0,0,0,0,"no","OS09G0353200","Os09g0353200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLS4]","Protein kinase, catalytic domain domain containing protein. (Os09t0353200-00)",9,11259049,11268028,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS09T0369750-00","NA","NA","NA","OS09G0369750",null,0,0,0,0,"no","OS09G0369750","Os09g0369750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XLK4]","Hypothetical gene. (Os09t0369750-00)",9,12284023,12285045,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0372900-01","NA","NA","NA","OS09G0372900",null,0,0,0,0,"no","OS09G0372900","Os09g0372900 protein [Source:UniProtKB/TrEMBL;Acc:Q6H4I4]","Hypothetical conserved gene. (Os09t0372900-01);Cyclin-like F-box domain containing protein. (Os09t0372900-02);Hypothetical conserved gene. (Os09t0372900-03)",9,12436991,12439216]
["OS09T0385900-01","NA","NA","Inf","OS09G0385900",null,0,0,1.95141013349393,0,"no","OS09G0385900","Os09g0385900 protein [Source:UniProtKB/TrEMBL;Acc:Q6H594]","Conserved hypothetical protein. (Os09t0385900-01)",9,13158329,13159646]
["OS09T0405001-00","NA","NA","NA","OS09G0405001",null,0,0,0,0,"no","OS09G0405001","Os09g0404300 protein [Source:UniProtKB/TrEMBL;Acc:Q69N09]","Similar to Uncharacterized protein OsI_031781. (Os09t0405001-00)",9,14280697,14281359]
["OS09T0412050-00","NA","NA","NA","OS09G0412050",null,0,0,0,0,"no","OS09G0412050","Os09g0412050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XN22]","Similar to Skp1-like protein. (Os09t0412050-00)",9,14628150,14628656,"GO:0006511","ubiquitin-dependent protein catabolic process","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]"]
["OS09T0423400-02","NA","NA","NA","OS09G0423400",null,0,0,0,0,"no","OS09G0423400","Integral membrane transporter-like protein [Source:UniProtKB/TrEMBL;Acc:Q69P43]","Biopterin transport-related protein BT1 family protein. (Os09t0423400-01);Biopterin transport-related protein BT1 family protein. (Os09t0423400-02)",9,15332960,15338795,"GO:0006810;GO:0016021;GO:0016020","transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS09T0435100-01","NA","NA",-0.033605333228824696,"OS09G0435100",null,1.02807425401265,1.02933026341046,2.01003433382113,0,"no","OS09G0435100","Os09g0435100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XNC4]","Hypothetical gene. (Os09t0435100-01)",9,15989784,15991063]
["OS09T0435250-00","NA","NA","NA","OS09G0435250",null,0,0,0,0,"no","OS09G0435250","Os09g0435250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XM35]","Zinc finger, RING-type domain containing protein. (Os09t0435250-00)",9,15991281,15996929,"GO:0016567;GO:0004842;GO:0046872;GO:0016740","protein ubiquitination;ubiquitin-protein transferase activity;metal ion binding;transferase activity","The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0444900-01","NA","NA",0.543811991003046,"OS09G0444900",null,3.90761854743379,0,1.95141013349393,3.7451919398736297,"no","OS09G0444900","Os09g0444900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XNJ7]","Similar to plant viral-response family protein. (Os09t0444900-01);Similar to plant viral-response family protein. (Os09t0444900-02)",9,16573502,16574893,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0455250-00","NA","NA","NA","OS09G0455250",null,0,0,0,0,"no","OS09G0455250","Os09g0455250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XNQ9]","Hypothetical protein. (Os09t0455250-00)",9,17109830,17110935]
["OS09T0464300-00","NA","NA","NA","OS09G0464300",null,0,0,0,0,"no","OS09G0464300","Os09g0464300 protein [Source:UniProtKB/TrEMBL;Acc:A3BZP1]","Similar to DNA-binding protein. (Os09t0464300-00)",9,17588153,17589518,"GO:0003680;GO:0005634;GO:0003700;GO:0006355;GO:0003677","AT DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated;DNA binding","Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). [GOC:jl, PMID:2670564];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS09T0478100-01","NA","NA","NA","OS09G0478100","CSLE1",0,0,0,0,"no","OS09G0478100","Cellulose synthase-like protein E1 [Source:UniProtKB/Swiss-Prot;Acc:Q651X7]","Cellulose synthase family protein. (Os09t0478100-01);Similar to Cellulose synthase-like protein E1. (Os09t0478100-02);Similar to Isoform 2 of Cellulose synthase-like protein E1. (Os09t0478100-03)",9,18307890,18314231,"GO:0030244;GO:0016760;GO:0016757;GO:0016020;GO:0016021;GO:0016740;GO:0009833;GO:0016759;GO:0005794;GO:0005886;GO:0000139;GO:0071555","cellulose biosynthetic process;cellulose synthase (UDP-forming) activity;transferase activity, transferring glycosyl groups;membrane;integral component of membrane;transferase activity;plant-type primary cell wall biogenesis;cellulose synthase activity;Golgi apparatus;plasma membrane;Golgi membrane;cell wall organization","The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];Catalysis of the reaction: nucleoside-disphosphate-glucose + ((1,4)-beta-D-glucosyl)(n) = nucleoside-disphosphate + ((1,4)-beta-D-glucosyl)(n+1). [EC:2.4.1.12, EC:2.4.1.29];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS09T0485500-01","NA","NA","NA","OS09G0485500",null,0,0,0,0,"no","OS09G0485500","Os09g0485500 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0S4]","Similar to WIP4. (Os09t0485500-01)",9,18735050,18737064]
["OS09T0486375-00","NA","NA",1.93744034286811,"OS09G0486375",null,1.01925391942615,0,2.9271152002409,0.9768869497833491,"no","OS09G0486375","Os09g0486375 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XNF4]","Conserved hypothetical protein. (Os09t0486375-00)",9,18756680,18757431]
["OS09T0500151-00","NA","NA","Inf","OS09G0500151",null,0,0,1.95141013349393,0,"no","OS09G0500151","Os09g0500151 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XPX4]","Hypothetical genes. (Os09t0500151-00)",9,19356356,19356847]
["OS09T0513700-01","NA","NA","NA","OS09G0513700",null,0,0,0,0,"no","OS09G0513700","Os09g0513700 protein [Source:UniProtKB/TrEMBL;Acc:Q69IN4]","Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os09t0513700-02)",9,19997001,19999811,"GO:0071011;GO:0000398;GO:0003729;GO:0003723;GO:0030529;GO:0003676;GO:0000243;GO:0019013;GO:0005689;GO:0017069","precatalytic spliceosome;mRNA splicing, via spliceosome;mRNA binding;RNA binding;intracellular ribonucleoprotein complex;nucleic acid binding;commitment complex;viral nucleocapsid;U12-type spliceosomal complex;snRNA binding","A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, PMID:18322460, PMID:19239890];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript. [GOC:krc, ISBN:0879695897, PMID:9150140];The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. [ISBN:0781702534];Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site. [GOC:krc, GOC:mah, PMID:11574683, PMID:11971955];Interacting selectively and non-covalently with a small nuclear RNA (snRNA). [GOC:mah]"]
["OS09T0524300-00","NA","NA","-Inf","OS09G0524300",null,0,3.07319708940017,0,0,"no","OS09G0524300","Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:Q651N3]","Multi antimicrobial extrusion protein MatE family protein. (Os09t0524300-00)",9,20469641,20471601,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0535200-01","NA","NA",-1.64621248415933,"OS09G0535200",null,3.05776175827846,0,0,0.9768869497833491,"no","OS09G0535200","Os09g0535200 protein [Source:UniProtKB/TrEMBL;Acc:Q69JZ8]","Conserved hypothetical protein. (Os09t0535200-01)",9,21046293,21050027]
["OS09T0540325-00","NA","NA","NA","OS09G0540325",null,0,0,0,0,"no","OS09G0540325",null,"Hypothetical protein. (Os09t0540325-00)",9,21266361,21267678]
["OS09T0545550-00","NA","NA","NA","OS09G0545550",null,0,0,0,0,"no","OS09G0545550","Os09g0545550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQ23]","Hypothetical gene. (Os09t0545550-00)",9,21574701,21575639]
["OS09T0551400-00","NA","NA",-2.1618452571262,"OS09G0551400",null,4.59601086013471,0,1.0270717355868,0,"no","OS09G0551400","Serine/threonine-protein kinase [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRC1]","Similar to S-locus receptor-like kinase RLK14. (Os09t0551400-00)",9,21841355,21845258,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0048544;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;recognition of pollen;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species. [GOC:dph, GOC:pj, GOC:tb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0563901-00","NA","NA",0.521966021354189,"OS09G0563901",null,2.03850783885231,0,2.9271152002409,0,"no","OS09G0563901","Os09g0563901 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XR98]","Hypothetical genes. (Os09t0563901-00)",9,22407489,22408082]
["OS09T0572301-00","NA","NA","Inf","OS09G0572301",null,0,0,0.7120885832584251,0,"no","OS09G0572301","Os09g0572301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRN7]","Hypothetical conserved gene. (Os09t0572301-00)",9,22859472,22861571,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0105966-00","NA","NA","NA","OS10G0105966",null,0,0,0,0,"no","OS10G0105966","Os10g0105966 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XQV3]","Hypothetical conserved gene. (Os10t0105966-00)",10,444530,444696]
["OS10T0107200-00","NA","NA",-0.06299647936696749,"OS10G0107200",null,1.01925391942615,0,0.9757050667469671,0,"no","OS10G0107200","Os10g0107200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRC2]","Hypothetical protein. (Os10t0107200-00)",10,525915,527290]
["OS10T0116600-00","NA","NA","NA","OS10G0116600",null,0,0,0,0,"no","OS10G0116600","Os10g0116600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRC9]","Serine/threonine protein kinase domain containing protein. (Os10t0116600-00)",10,1067078,1068007,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0130066-00","NA","NA","NA","OS10G0130066",null,0,0,0,0,"no","OS10G0130066","Os10g0130066 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRW4]","Hypothetical protein. (Os10t0130066-00)",10,1829368,1830416]
["OS10T0138000-00","NA","NA","NA","OS10G0138000",null,0,0,0,0,"no","OS10G0138000","Os10g0138000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XS80]","Hypothetical conserved gene. (Os10t0138000-00)",10,2350665,2354534,"GO:0031146;GO:0004842;GO:0016567","SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;ubiquitin-protein transferase activity;protein ubiquitination","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]"]
["OS10T0148100-01","NA","NA","Inf","OS10G0148100",null,0,0,0,2.93066084935005,"no","OS10G0148100","Os10g0148100 protein [Source:UniProtKB/TrEMBL;Acc:Q7XGT9]","Protein of unknown function DUF1210 family protein. (Os10t0148100-01)",10,2897688,2899059]
["OS10T0155600-00","NA","NA","NA","OS10G0155600",null,0,0,0,0,"no","OS10G0155600","Os10g0155600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRX6]","Hypothetical protein. (Os10t0155600-00)",10,3500868,3501538]
["OS10T0163300-00","NA","NA","NA","OS10G0163300",null,0,0,0,0,"no","OS10G0163300","Os10g0163300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XRW9]","Hypothetical protein. (Os10t0163300-00)",10,4326654,4332934,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0174548-00","NA","NA","NA","OS10G0174548",null,0,0,0,0,"no","OS10G0174548","Os10g0174548 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XS43]","Similar to Calcium binding EGF domain containing protein. (Os10t0174548-00)",10,5157636,5164933,"GO:0007166;GO:0004674;GO:0005886;GO:0006468;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021;GO:0016740","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;protein phosphorylation;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane;transferase activity","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS10T0178000-00","NA","NA",-0.0766065236782431,"OS10G0178000",null,0,3.08799079023137,1.95141013349393,0.9768869497833491,"no","OS10G0178000","Os10g0178000 protein [Source:UniProtKB/TrEMBL;Acc:Q8LNB8]","Similar to Proline-rich protein. (Os10t0178000-00)",10,5369238,5369624,"GO:0006508;GO:0008233","proteolysis;peptidase activity","The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS10T0188100-02","NA","NA","NA","OS10G0188100",null,0,0,0,0,"no","OS10G0188100","Mutant TFIIF-alpha, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q53QT1]","Conserved hypothetical protein. (Os10t0188100-01);Similar to transcription initiation factor IIF, alpha subunit. (Os10t0188100-02);Transcription initiation factor IIF, alpha subunit family protein. (Os10t0188100-03);Conserved hypothetical protein. (Os10t0188100-04)",10,6079970,6087844,"GO:0016020;GO:0016021;GO:0003743;GO:0006413;GO:0032968;GO:0006367;GO:0005634;GO:0003677","membrane;integral component of membrane;translation initiation factor activity;translational initiation;positive regulation of transcription elongation from RNA polymerase II promoter;transcription initiation from RNA polymerase II promoter;nucleus;DNA binding","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH];Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. [GOC:mah, GOC:txnOH];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS10T0202501-01","NA","NA","NA","OS10G0202501",null,0,0,0,0,"no","OS10G0202501","Os10g0202501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSK7]","Hypothetical gene. (Os10t0202501-01)",10,7301658,7304913,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0207700-01","NA","NA","NA","OS10G0207700",null,0,0,0,0,"no","OS10G0207700","Os10g0207700 protein [Source:UniProtKB/TrEMBL;Acc:Q0IYI4]","EGF-like region, conserved site domain containing protein. (Os10t0207700-01)",10,7642884,7644043,"GO:0046916;GO:0030001;GO:0046914;GO:0005737","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS10T0328100-00","NA","NA","NA","OS10G0328100",null,0,0,0,0,"no","OS10G0328100","Os10g0328100 protein [Source:UniProtKB/TrEMBL;Acc:Q8S5Z3]","Conserved hypothetical protein. (Os10t0328100-00)",10,9170819,9171265,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0344800-00","NA","NA",-1.6878932724385,"OS10G0344800",null,4.09267849982079,10.1149391397401,4.40975799431688,0,"no","OS10G0344800","Os10g0344800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XU01]","Similar to Phosphoglycerate mutase family protein, expressed. (Os10t0344800-00)",10,10278806,10283435]
["OS10T0359801-00","NA","NA","NA","OS10G0359801",null,0,0,0,0,"no","OS10G0359801","Os10g0359801 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XT62]","Conserved hypothetical protein. (Os10t0359801-00)",10,11051332,11052064]
["OS10T0377800-01","NA","NA","-Inf","OS10G0377800",null,23.4104716387272,0,0,0,"no","OS10G0377800","Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G49970) UniProtKB/Swiss-Prot;Acc:Q9LTX3]","Similar to Pyridoxamine 5-phosphate oxidase. (Os10t0377800-01);Similar to predicted protein. (Os10t0377800-02);Similar to ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase. (Os10t0377800-03)",10,12067809,12073660,"GO:0008615;GO:0016638;GO:0042823;GO:0004733;GO:0010181;GO:0055114;GO:0048037;GO:0052856;GO:0052857;GO:0005739;GO:0016853;GO:0046872;GO:0000166;GO:0006734;GO:0006739;GO:0005829;GO:0009507","pyridoxine biosynthetic process;oxidoreductase activity, acting on the CH-NH2 group of donors;pyridoxal phosphate biosynthetic process;pyridoxamine-phosphate oxidase activity;FMN binding;oxidation-reduction process;cofactor binding;NADHX epimerase activity;NADPHX epimerase activity;mitochondrion;isomerase activity;metal ion binding;nucleotide binding;NADH metabolic process;NADP metabolic process;cytosol;chloroplast","The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6. [GOC:jl, http://www.mercksource.com/];Catalysis of the reaction: pyridoxamine 5'-phosphate + H2O + O2 = pyridoxal 5'-phosphate + NH3 + hydrogen peroxide. [EC:1.4.3.5];Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. [GOC:tb];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. [ISBN:0198506732];Catalysis of the reaction: (R)-NADHX = (S)-NADHX. [PMID:21994945];Catalysis of the reaction: (R)-NADPHX = (S)-NADPHX. [PMID:21994945];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The chemical reactions and pathways involving reduced nicotinamide adenine dinucleotide (NADH), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. [GOC:jl, ISBN:0618254153];The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS10T0394400-02","NA","NA","NA","OS10G0394400",null,0,0,0,0,"no","OS10G0394400","Os10g0394400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XTQ5]","Disease resistance protein domain containing protein. (Os10t0394400-01);Non-protein coding transcript. (Os10t0394400-02)",10,13171237,13183557,"GO:0043531","ADP binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl]"]
["OS10T0409400-01","NA","NA",-2.65568960993168,"OS10G0409400","BURP16",2.03850783885231,4.11732105364182,0,0.9768869497833491,"no","OS10G0409400","BURP domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q7XES5]","beta subunit of polygalacturonase 1, Abiotic stress response (Os10t0409400-01)",10,14171332,14172873]
["OS10T0411600-01","NA","NA",-1.26729125656074,"OS10G0411600",null,2.24818809695271,3.51172025327082,2.39289086446413,0,"no","OS10G0411600","Os10g0411600 protein [Source:UniProtKB/TrEMBL;Acc:Q0IXR8]","Hypothetical protein. (Os10t0411600-01)",10,14319926,14321570]
["OS10T0425700-00","NA","NA",-0.0692366415222794,"OS10G0425700",null,1.01925391942615,1.02933026341046,0.9757050667469671,0.9768869497833491,"no","OS10G0425700","Os10g0425700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUA9]","MATH domain containing protein. (Os10t0425700-00)",10,15124409,15125348]
["OS10T0432650-00","NA","NA","NA","OS10G0432650",null,0,0,0,0,"no","OS10G0432650","Os10g0432650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUF6]","Hypothetical genes. (Os10t0432650-00)",10,15436590,15437348]
["OS10T0439700-00","NA","NA","NA","OS10G0439700",null,0,0,0,0,"no","OS10G0439700","Os10g0439700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVA7]","Similar to Cytochrome P450 family protein, expressed. (Os10t0439700-00)",10,15791484,15792467,"GO:0016705;GO:0005506;GO:0055114;GO:0020037","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidation-reduction process;heme binding","Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS10T0456950-00","NA","NA",1.34773149731892,"OS10G0456950",null,2.03850783885231,1.02933026341046,5.8542304004818,1.9537738995667,"no","OS10G0456950","Os10g0456950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVF3]","Hypothetical conserved gene. (Os10t0456950-00)",10,16738879,16742559,"GO:0000027;GO:0016887;GO:0005634;GO:0005524;GO:0000166","ribosomal large subunit assembly;ATPase activity;nucleus;ATP binding;nucleotide binding","The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. [GOC:jl];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS10T0459550-00","NA","NA",-1.06124998343817,"OS10G0459550",null,4.07701567770462,0,0,1.9537738995667,"no","OS10G0459550","Os10g0459550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUZ0]","Hypothetical conserved gene. (Os10t0459550-00)",10,16885929,16886634]
["OS10T0471700-01","NA","NA",-0.592375501030969,"OS10G0471700","KRP4",3.27457211288495,3.23549091705164,1.06943059318159,3.24836818289023,"no","OS10G0471700","Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q7XDH8]","Similar to cDNA clone:J033067M05, full insert sequence. (Os10t0471700-01);Similar to Cyclin-dependent kinase inhibitor 7. (Os10t0471700-02)",10,17499846,17503202,"GO:0071901;GO:0007050;GO:0004861;GO:0005634;GO:0006469;GO:0004860;GO:0016020;GO:0016021","negative regulation of protein serine/threonine kinase activity;cell cycle arrest;cyclin-dependent protein serine/threonine kinase inhibitor activity;nucleus;negative regulation of protein kinase activity;protein kinase inhibitor activity;membrane;integral component of membrane","Any process that decreases the rate, frequency, or extent of protein serine/threonine kinase activity. [GOC:BHF, GOC:mah];A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M). [GOC:dph, GOC:mah, GOC:tb];Stops, prevents or reduces the activity of a cyclin-dependent protein serine/threonine kinase. [GOC:mah, GOC:pr];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity. [GOC:go_curators];Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0478750-00","NA","NA","NA","OS10G0478750",null,0,0,0,0,"no","OS10G0478750","Os10g0478750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVS1]","Hypothetical protein. (Os10t0478750-00)",10,17965942,17966981]
["OS10T0493100-03","NA","NA","NA","OS10G0493100",null,0,0,0,0,"no","OS10G0493100","Os10g0493100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XVN4]","K Homology, type 1 domain containing protein. (Os10t0493100-01);Similar to KH domain containing protein, expressed. (Os10t0493100-02);Pentatricopeptide repeat domain containing protein. (Os10t0493100-03)",10,18718071,18722354,"GO:0003723","RNA binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS10T0504100-00","NA","NA",-0.656562593612243,"OS10G0504100",null,1.01925391942615,2.05866052682091,0.9757050667469671,0.9768869497833491,"no","OS10G0504100","Os10g0504100 protein [Source:UniProtKB/TrEMBL;Acc:Q53RP6]","Conserved hypothetical protein. (Os10t0504100-00)",10,19255110,19255555]
["OS10T0514600-01","NA","NA","NA","OS10G0514600",null,0,0,0,0,"no","OS10G0514600","T-complex protein 1 subunit delta [Source:UniProtKB/TrEMBL;Acc:Q9FW88]","Similar to Clone ZZD584 mRNA sequence. (Os10t0514600-01)",10,19840596,19842443,"GO:0005832;GO:0006458;GO:0051082;GO:0044183;GO:0061077;GO:0005737;GO:0006457;GO:0005524;GO:0000166","chaperonin-containing T-complex;'de novo' protein folding;unfolded protein binding;protein binding involved in protein folding;chaperone-mediated protein folding;cytoplasm;protein folding;ATP binding;nucleotide binding","A multisubunit ring-shaped complex that mediates protein folding in the cytosol without a cofactor. [GOC:sgd_curators, PMID:11580267];The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure. [GOC:mb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding. [GOC:mtg_cambridge_2009];The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS10T0516250-00","NA","NA","NA","OS10G0516250",null,0,0,0,0,"no","OS10G0516250","Os10g0516250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XW93]","Hypothetical protein. (Os10t0516250-00)",10,19899960,19900603]
["OS10T0525301-00","NA","NA","Inf","OS10G0525301",null,0,0,0,0.9781060052760651,"no","OS10G0525301","Os10g0525301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XWI4]","Hypothetical gene. (Os10t0525301-00)",10,20427557,20428587]
["OS10T0537400-00","NA","NA",-0.656562593612243,"OS10G0537400",null,1.01925391942615,2.05866052682091,0.9757050667469671,0.9768869497833491,"no","OS10G0537400","Copper chaperone, putative [Source:UniProtKB/TrEMBL;Acc:Q8LNN6]","Similar to metal ion binding protein. (Os10t0537400-00)",10,20935118,20935819,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS10T0550750-00","NA","NA","NA","OS10G0550750",null,0,0,0,0,"no","OS10G0550750","Os10g0550750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KS65]","Protein of unknown function DUF3527 domain containing protein. (Os10t0550750-00)",10,21607401,21609865,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0561900-03","NA","NA","NA","OS10G0561900",null,0,0,0,0,"no","OS10G0561900","Putative dual specificity protein phosphatase DSP8 [Source:Projected from Arabidopsis thaliana (AT2G35680) UniProtKB/Swiss-Prot;Acc:Q9ZQP1]","Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os10t0561900-01);Protein-tyrosine phosphatase, dual specificity domain containing protein. (Os10t0561900-02);Similar to Protein-tyrosine phosphatase mitochondrial 1. (Os10t0561900-03);Similar to Protein-tyrosine phosphatase mitochondrial 1. (Os10t0561900-04)",10,22161170,22165059,"GO:0035335;GO:0016311;GO:0004725;GO:0008138;GO:0016791;GO:0006470;GO:0004439","peptidyl-tyrosine dephosphorylation;dephosphorylation;protein tyrosine phosphatase activity;protein tyrosine/serine/threonine phosphatase activity;phosphatase activity;protein dephosphorylation;phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity","The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [GOC:mah];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric residues from a protein. [GOC:hb];Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate. [EC:3.1.3.36, RHEA:22767]"]
["OS10T0565700-02","NA","NA",0.34365570183612404,"OS10G0565700",null,2.03850783885231,4.11732105364182,2.9271152002409,4.88443474891674,"no","OS10G0565700","Os10g0565700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XXB0]","Similar to SNF2 family N-terminal domain containing protein. (Os10t0565700-01);Similar to SNF2 family N-terminal domain containing protein. (Os10t0565700-02)",10,22400276,22410845,"GO:0005524;","ATP binding;","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];"]
["OS10T0575401-00","NA","NA","Inf","OS10G0575401",null,0,0,4.87852533373483,0.9768869497833491,"no","OS10G0575401","Os10g0575401 protein [Source:UniProtKB/TrEMBL;Acc:C7J7H5]","VQ domain containing protein. (Os10t0575401-00)",10,22879072,22879752]
["OS11T0109050-01","NA","NA","-Inf","OS11G0109050",null,0.841485722978578,0,0,0,"no","OS11G0109050","Os11g0109050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KSB4]","Hypothetical gene. (Os11t0109050-01)",11,424568,425162]
["OS11T0118000-01","NA","NA",-2.08760187619551,"OS11G0118000",null,2.18411554162747,12.7636952662897,0,3.51679301922006,"no","OS11G0118000","Hydrolase, alpha/beta fold family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RBB3]","Alpha/beta hydrolase fold-1 domain containing protein. (Os11t0118000-01)",11,813846,815795,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS11T0131600-00","NA","NA",0.693452145483445,"OS11G0131600",null,3.49337060546724,2.4745321394561,5.13263218993587,4.51835265073728,"no","OS11G0131600","Os11g0131600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XYC1]","Similar to YDG/SRA domain containing protein. (Os11t0131600-00)",11,1439580,1441577,"GO:0016571;GO:0034968;GO:0018024;GO:0042393;GO:0005694;GO:0032259;GO:0008168;GO:0005634;GO:0008270;GO:0016740","histone methylation;histone lysine methylation;histone-lysine N-methyltransferase activity;histone binding;chromosome;methylation;methyltransferase activity;nucleus;zinc ion binding;transferase activity","The modification of histones by addition of methyl groups. [GOC:ai];The modification of a histone by addition of one or more methyl groups to a lysine residue. [GOC:mah, GOC:pr];Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. [EC:2.1.1.43, RESID:AA0074, RESID:AA0075, RESID:AA0076];Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. [GOC:jl];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0146100-01","NA","NA",0.431246018866608,"OS11G0146100",null,1.16239886151392,1.04888458127416,0.99495447160741,1.98673492772754,"no","OS11G0146100","Os11g0146100 protein [Source:UniProtKB/TrEMBL;Acc:Q0IUN7]","Similar to AtPIP5K1. (Os11t0146100-01)",11,2087799,2089433,"GO:0016310;GO:0016301","phosphorylation;kinase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS11T0156750-00","NA","NA","Inf","OS11G0156750",null,0,0,3.46190691844324,0,"no","OS11G0156750",null,"Hypothetical protein. (Os11t0156750-00)",11,2696749,2699523]
["OS11T0158666-00","NA","NA","NA","OS11G0158666",null,0,0,0,0,"no","OS11G0158666","Os11g0158666 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZA8]","Hypothetical protein. (Os11t0158666-00)",11,2838490,2843299,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0174000-01","NA","NA",0.9982969125523341,"OS11G0174000",null,0.008231976836278031,0.012615897668121899,0.0227078582258207,0.0189386983985607,"no","OS11G0174000","Coatomer subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q53PC7]","Coatomer, beta subunit domain containing protein. (Os11t0174000-01);Similar to Adaptin N terminal region family protein, expressed. (Os11t0174000-02);Coatomer, beta subunit domain containing protein. (Os11t0174000-03);Similar to Adaptin N terminal region family protein, expressed. (Os11t0174000-04)",11,3668116,3673502,"GO:0030126;GO:0016192;GO:0006886;GO:0005198;GO:0005737;GO:0006891;GO:0006890;GO:0006888;GO:0031410;GO:0030663;GO:0015031;GO:0030117;GO:0006810;GO:0016020;GO:0005794;GO:0000139;","COPI vesicle coat;vesicle-mediated transport;intracellular protein transport;structural molecule activity;cytoplasm;intra-Golgi vesicle-mediated transport;retrograde vesicle-mediated transport, Golgi to ER;ER to Golgi vesicle-mediated transport;cytoplasmic vesicle;COPI-coated vesicle membrane;protein transport;membrane coat;transport;membrane;Golgi apparatus;Golgi membrane;","One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. [GOC:mah, PMID:11252894];A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000];The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. [GOC:mah, GOC:vw];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). [ISBN:0716731363];The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:0716731363, PMID:16510524];The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:0716731363];A vesicle found in the cytoplasm of a cell. [GOC:ai, GOC:mah, GOC:vesicles];The lipid bilayer surrounding a COPI-coated vesicle. [GOC:mah];The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. [GOC:mah];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732];The lipid bilayer surrounding any of the compartments of the Golgi apparatus. [GOC:mah];"]
["OS11T0186050-00","NA","NA","NA","OS11G0186050",null,0,0,0,0,"no","OS11G0186050","Os11g0186050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZR7]","Hypothetical protein. (Os11t0186050-00)",11,4355110,4355880]
["OS11T0194400-01","NA","NA","NA","OS11G0194400",null,0,0,0,0,"no","OS11G0194400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53LI4]","Similar to Pectinesterase family protein. (Os11t0194400-01)",11,4714315,4715470]
["OS11T0202000-02","NA","NA","-Inf","OS11G0202000",null,1.18457648935872,0,0,0,"no","OS11G0202000","Os11g0202000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZX4]","F-box domain, cyclin-like domain containing protein. (Os11t0202000-01);Hypothetical conserved gene. (Os11t0202000-02)",11,5153098,5156354]
["OS11T0208600-01","NA","NA",-0.329379864185045,"OS11G0208600",null,4.07701567770462,2.05866052682091,0.9757050667469671,3.9075477991334,"no","OS11G0208600","Os11g0208600 protein [Source:UniProtKB/TrEMBL;Acc:Q0ITY1]","Similar to F-box family-8. (Os11t0208600-01)",11,5565444,5568307,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0212000-00","NA","NA",-1.65095882898736,"OS11G0212000",null,2.03850783885231,1.02933026341046,0,0.9768869497833491,"no","OS11G0212000","Os11g0212000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y076]","Similar to Leucine Rich Repeat family protein, expressed. (Os11t0212000-00)",11,5820879,5826729,"GO:0005886;GO:0007165;GO:0006952;GO:0043531;GO:0016020;GO:0016021","plasma membrane;signal transduction;defense response;ADP binding;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0216900-01","NA","NA","NA","OS11G0216900","IDI2",0,0,0,0,"no","OS11G0216900","Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q0ITU1]","Similar to IDI2. (Os11t0216900-01);Similar to IDI2. (Os11t0216900-02);Similar to IDI2. (Os11t0216900-03)",11,6102863,6106487,"GO:0046523;GO:0019509;GO:0044249;GO:0009086;GO:0044237;GO:0008652;GO:0005737;GO:0016853;GO:0005634;GO:0003743;GO:0006413;GO:0071281;GO:0071369;GO:0071732;GO:0009506;GO:0019284","S-methyl-5-thioribose-1-phosphate isomerase activity;L-methionine salvage from methylthioadenosine;cellular biosynthetic process;methionine biosynthetic process;cellular metabolic process;cellular amino acid biosynthetic process;cytoplasm;isomerase activity;nucleus;translation initiation factor activity;translational initiation;cellular response to iron ion;cellular response to ethylene stimulus;cellular response to nitric oxide;plasmodesma;L-methionine salvage from S-adenosylmethionine","Catalysis of the reaction: S-methyl-5-thio-alpha-D-ribose 1-phosphate = S-methyl-5-thio-D-ribulose 1-phosphate. [EC:5.3.1.23, RHEA:19992];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:jl];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways by which individual cells transform chemical substances. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of L-methionine from S-adenosylmethionine. [GOC:go_curators, GOC:vw]"]
["OS11T0225300-02","NA","NA","NA","OS11G0225300",null,0,0,0,0,"no","OS11G0225300","NB-ARC domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R8L1]","NB-ARC domain containing protein. (Os11t0225300-01);Hypothetical conserved gene. (Os11t0225300-02)",11,6554522,6561687,"GO:0043531;GO:0005515;GO:0005886;GO:0007165;GO:0006952;GO:0042802","ADP binding;protein binding;plasma membrane;signal transduction;defense response;identical protein binding","Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl]"]
["OS11T0240800-01","NA","NA",0.271168850231056,"OS11G0240800",null,0.000548167824253763,8.9372638648628608E-4,1.0748360236191902E-3,0.000665220499576291,"no","OS11G0240800","Os11g0240800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y101]","Hypothetical conserved gene. (Os11t0240800-01);Hypothetical conserved gene. (Os11t0240800-02)",11,7501175,7503573]
["OS11T0250900-00","NA","NA",-0.0754424280096154,"OS11G0250900",null,0,1.02933026341046,0,0.9768869497833491,"no","OS11G0250900","Os11g0250900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y157]","Conserved hypothetical protein. (Os11t0250900-00)",11,8139798,8140173,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0257800-02","NA","NA",-1.25509284643969,"OS11G0257800",null,4.39344456085262,5.564288473861,0,4.17195758659763,"no","OS11G0257800","Os11g0257800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y0W9]","Hypothetical protein. (Os11t0257800-01);Conserved hypothetical protein. (Os11t0257800-02)",11,8532272,8554283,"GO:0016020;GO:0016021;","membrane;integral component of membrane;","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS11T0275900-00","NA","NA","NA","OS11G0275900",null,0,0,0,0,"no","OS11G0275900","Os11g0275900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y1Q5]","Conserved hypothetical protein. (Os11t0275900-00)",11,9794124,9794527]
["OS11T0294600-01","NA","NA",0.8917598727686351,"OS11G0294600",null,3.1206847228259897E-7,1.0267588495387201E-6,1.50648370065689E-6,9.7762752371831e-07,"no","OS11G0294600","Os11g0294600 protein [Source:UniProtKB/TrEMBL;Acc:Q53MH1]","Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0294600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os11t0294600-02)",11,10786668,10791727]
["OS11T0329399-01","NA","NA",-1.2408234026198701,"OS11G0329399",null,4.07701567770462,5.14665131705228,3.90282026698787,0,"no","OS11G0329399","Os11g0329399 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y1Z5]","Hypothetical gene. (Os11t0329399-01)",11,12293860,12295589]
["OS11T0431100-00","NA","NA",1.50893814228931,"OS11G0431100",null,0,1.02933026341046,0.9757050667469671,1.9537738995667,"no","OS11G0431100","Os11g0431100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2J3]","Similar to Serine carboxypeptidase family protein. (Os11t0431100-00)",11,13837263,13841215,"GO:0019748;GO:0016747;GO:0004185;GO:0004180;GO:0006508","secondary metabolic process;transferase activity, transferring acyl groups other than amino-acyl groups;serine-type carboxypeptidase activity;carboxypeptidase activity;proteolysis","The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. [GOC:go_curators];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]"]
["OS11T0454200-01","NA","NA","Inf","OS11G0454200","RAB16B",0,0,0,1.9537738995667,"no","OS11G0454200","Dehydrin Rab16B [Source:UniProtKB/Swiss-Prot;Acc:Q2R4Z5]","Dehydrin RAB 16B. (Os11t0454200-01)",11,15336192,15337158,"GO:0005829;GO:0009415;GO:0006950;GO:0009631;GO:0009414;GO:0009737","cytosol;response to water;response to stress;cold acclimation;response to water deprivation;response to abscisic acid","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah];Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures. [GOC:syr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]"]
["OS11T0457000-00","NA","NA","NA","OS11G0457000",null,0,0,0,0,"no","OS11G0457000","Os11g0457000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2H6]","UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein. (Os11t0457000-00)",11,15475373,15476302,"GO:0016758;GO:0008152","transferase activity, transferring hexosyl groups;metabolic process","Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS11T0476667-00","NA","NA","NA","OS11G0476667",null,0,0,0,0,"no","OS11G0476667",null,"Hypothetical protein. (Os11t0476667-00)",11,16638643,16639079]
["OS11T0495400-00","NA","NA","NA","OS11G0495400",null,0,0,0,0,"no","OS11G0495400","Os11g0495400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2V6]","Similar to PHF5-like protein. (Os11t0495400-00)",11,17596500,17596895]
["OS11T0517200-00","NA","NA","NA","OS11G0517200",null,0,0,0,0,"no","OS11G0517200","Os11g0517200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y2N5]","Hypothetical conserved gene. (Os11t0517200-00)",11,18544614,18548898,"GO:0003676;GO:0008270","nucleic acid binding;zinc ion binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS11T0533400-01","NA","NA","NA","OS11G0533400",null,0,0,0,0,"no","OS11G0533400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2R376]","Conserved hypothetical protein. (Os11t0533400-01)",11,19430389,19431158]
["OS11T0537900-01","NA","NA","NA","OS11G0537900",null,0,0,0,0,"no","OS11G0537900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:B7F007]","Conserved hypothetical protein. (Os11t0537900-01)",11,19615010,19615672]
["OS11T0605200-00","NA","NA","NA","OS11G0605200",null,0,0,0,0,"no","OS11G0605200","Os11g0605200 protein [Source:UniProtKB/TrEMBL;Acc:B9FI82]","Hypothetical conserved gene. (Os11t0605200-00)",11,23344407,23344691]
["OS11T0622600-00","NA","NA","NA","OS11G0622600",null,0,0,0,0,"no","OS11G0622600","BTB/POZ domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2R115]","TRAF-type domain containing protein. (Os11t0622600-00)",11,24279005,24280117]
["OS11T0637166-01","NA","NA","-Inf","OS11G0637166",null,1.01925391942615,0,0,0,"no","OS11G0637166","Os11g0637166 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y4Y2]","Hypothetical gene. (Os11t0637166-01)",11,25162871,25164608]
["OS11T0645886-00","NA","NA",-0.8139149509366511,"OS11G0645886",null,0,1.71734330781611,0,0.9768869497833491,"no","OS11G0645886","Os11g0645886 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y548]","NB-ARC domain containing protein. (Os11t0645886-00)",11,25635165,25637763,"GO:0015074;GO:0043531;GO:0003676","DNA integration;ADP binding;nucleic acid binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS11T0659600-01","NA","NA","NA","OS11G0659600",null,0,0,0,0,"no","OS11G0659600","Pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q2R044]","Pectinesterase, catalytic domain containing protein. (Os11t0659600-01)",11,26475503,26478045,"GO:0045490;GO:0042545;GO:0045330;GO:0030599;GO:0005618;GO:0016787","pectin catabolic process;cell wall modification;aspartyl esterase activity;pectinesterase activity;cell wall;hydrolase activity","The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668];The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl];Catalysis of the hydrolysis of an ester bond by a mechanism involving a catalytically active aspartic acid residue. [GOC:mah, UniProtKB-KW:KW-0063];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins. [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS11T0677425-00","NA","NA","Inf","OS11G0677425",null,0,0,0,1.1854614854419099,"no","OS11G0677425","Os11g0677425 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5Z1]","Similar to Ribonucleases P/MRP protein subunit POP1 containing protein, expressed. (Os11t0677425-00)",11,27368754,27381376,"GO:0004523;GO:0015074;GO:0090502;GO:0003676;GO:0016020;GO:0016021","RNA-DNA hybrid ribonuclease activity;DNA integration;RNA phosphodiester bond hydrolysis, endonucleolytic;nucleic acid binding;membrane;integral component of membrane","Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. [EC:3.1.26.4];The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0681300-00","NA","NA","NA","OS11G0681300",null,0,0,0,0,"no","OS11G0681300","Os11g0681300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5B4]","Similar to Cyclin-like F-box; FAR1; Zinc finger, SWIM-type. (Os11t0681300-00)",11,27565072,27567357,"GO:0006355;GO:0008270;GO:0016020;GO:0016021","regulation of transcription, DNA-templated;zinc ion binding;membrane;integral component of membrane","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0695975-01","NA","NA",-0.43602151065751904,"OS11G0695975",null,4.48504429885357,3.47761475152111,1.53920015452501,4.34656008439011,"no","OS11G0695975","Os11g0695975 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5X4]","Conserved hypothetical protein. (Os11t0695975-01)",11,28470506,28471598]
["OS11T0707100-00","NA","NA","Inf","OS11G0707100",null,0,0,0,0.9788081790692321,"no","OS11G0707100","Os11g0707100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y5Q1]","Hypothetical conserved gene. (Os11t0707100-00)",11,28938253,28939239,"GO:0009570;GO:0016020;GO:0016021;GO:0043085;GO:0009579;GO:0046863","chloroplast stroma;membrane;integral component of membrane;positive regulation of catalytic activity;thylakoid;ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity","The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process that activates or increases the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Increases the activity of rubisco by the removal of otherwise inhibitory sugar phosphates: RuBP, and in some plants, 2-carboxyarabinitol 1-phosphate. [PMID:10430961, PMID:10965036, PMID:2404515]"]
["OS12T0110475-01","NA","NA",0.192670282177056,"OS12G0110475",null,2.03850783885231,3.08799079023137,1.95141013349393,3.9075477991334,"no","OS12G0110475","Os12g0110475 protein [Source:UniProtKB/TrEMBL;Acc:B9GBH6]","Conserved hypothetical protein. (Os12t0110475-01)",12,566351,567783]
["OS12T0117800-01","NA","NA","NA","OS12G0117800",null,0,0,0,0,"no","OS12G0117800","Os12g0117800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KTH4]","Similar to predicted protein. (Os12t0117800-01)",12,876728,878237,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0124000-01","NA","NA","Inf","OS12G0124000",null,0,0,0,5.3789009881450006E-8,"no","OS12G0124000","FHA domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QYD1]","Similar to FHA domain containing protein, expressed. (Os12t0124000-01);Similar to FHA domain containing protein, expressed. (Os12t0124000-02);Similar to FHA domain containing protein, expressed. (Os12t0124000-03);Similar to FHA domain containing protein, expressed. (Os12t0124000-04);Similar to FHA domain containing protein, expressed. (Os12t0124000-05)",12,1156635,1158438,"GO:0003729;GO:0005634","mRNA binding;nucleus","Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0138000-01","NA","NA",0.82073482349839,"OS12G0138000",null,0,1.35240116254709,0,2.38875349663555,"no","OS12G0138000","Os12g0138000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6R8]","Hypothetical conserved gene. (Os12t0138000-01)",12,1845295,1849516]
["OS12T0144200-00","NA","NA","-Inf","OS12G0144200",null,0,1.02933026341046,0,0,"no","OS12G0144200","Dirigent protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y725]","Similar to Jasmonate-induced protein. (Os12t0144200-00)",12,2176948,2180811,"GO:0016853;GO:0048046;GO:0005576","isomerase activity;apoplast;extracellular region","Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS12T0158900-00","NA","NA","-Inf","OS12G0158900",null,1.01925391942615,0,0,0,"no","OS12G0158900","Harpin-induced protein 1 containing protein [Source:UniProtKB/TrEMBL;Acc:Q2QXF6]","Late embryogenesis abundant protein, LEA-14 domain containing protein. (Os12t0158900-00)",12,2947866,2948580,"GO:0009506;GO:0004871;GO:0046658;GO:0006952;GO:0007165;GO:0016020;GO:0016021","plasmodesma;signal transducer activity;anchored component of plasma membrane;defense response;signal transduction;membrane;integral component of membrane","A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0173388-00","NA","NA",-0.0164936753466371,"OS12G0173388",null,0,5.02391512291821,1.6015319710968,3.36527409126098,"no","OS12G0173388","Os12g0173388 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7F7]","Hypothetical genes. (Os12t0173388-00)",12,3719783,3720043]
["OS12T0187800-00","NA","NA",-1.29148848091325,"OS12G0187800",null,4.07701567770462,3.08799079023137,2.9271152002409,0,"no","OS12G0187800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QWP2]","Conserved hypothetical protein. (Os12t0187800-00)",12,4412608,4415933]
["OS12T0191400-00","NA","NA",-1.25884174496438,"OS12G0191400",null,12.9147313367433,2.60313471443838,3.54487642862158,2.93971881973688,"no","OS12G0191400","Os12g0191400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7R0]","Conserved hypothetical protein. (Os12t0191400-00)",12,4653181,4654482]
["OS12T0205633-00","NA","NA","NA","OS12G0205633",null,0,0,0,0,"no","OS12G0205633","Os12g0205633 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7Z6]","Conserved hypothetical protein. (Os12t0205633-00)",12,5535012,5535540,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0226400-00","NA","NA",-1.21490934951951,"OS12G0226400",null,2.07693572450392,9.2639723706941,1.95500403601588,2.93066084935005,"no","OS12G0226400","Os12g0226400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y895]","Similar to 2-alkenal reductase. (Os12t0226400-00)",12,6889996,6896735,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS12T0240900-00","NA","NA","-Inf","OS12G0240900",null,1.01925391942615,0,0,0,"no","OS12G0240900","Naringenin 7-O-methyltransferase [Source:UniProtKB/TrEMBL;Acc:I2FFE9]","Naringenin 7-O-methyltransferase, Biosynthesis of flavonoid phytoalexin sakuranetin (Os12t0240900-01)",12,7801961,7807363,"GO:0019438;GO:0008757;GO:0008171;GO:0046983;GO:0032259;GO:0008168;GO:0016740;GO:0102766","aromatic compound biosynthetic process;S-adenosylmethionine-dependent methyltransferase activity;O-methyltransferase activity;protein dimerization activity;methylation;methyltransferase activity;transferase activity;naringenin 7-O-methyltransferase activity","The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai];Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. [GOC:mah];Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. [GOC:ai];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: (S)-naringenin(1-) + S-adenosyl-L-methionine  <=> sakuranetin + S-adenosyl-L-homocysteine  + H+ [EC:2.1.1.232]"]
["OS12T0261575-00","NA","NA","NA","OS12G0261575",null,0,0,0,0,"no","OS12G0261575",null,"Hypothetical protein. (Os12t0261575-00)",12,9196122,9196525]
["OS12T0271700-01","NA","NA","Inf","OS12G0271700","SPS3",0,0,0,0.9768869497833491,"no","OS12G0271700","Probable solanesyl-diphosphate synthase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0INZ4]","Similar to prenyl transferase. (Os12t0271700-01);Similar to Solanesyl diphosphate synthase 1. (Os12t0271700-02)",12,9915351,9922691,"GO:0015979;GO:0016765;GO:0052923;GO:0050347;GO:0008299;GO:0009536;GO:0009507;GO:0046872;GO:0006468;GO:0005524;GO:0004672;GO:0016740","photosynthesis;transferase activity, transferring alkyl or aryl (other than methyl) groups;all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity;trans-octaprenyltranstransferase activity;isoprenoid biosynthetic process;plastid;chloroplast;metal ion binding;protein phosphorylation;ATP binding;protein kinase activity;transferase activity","The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: geranyl diphosphate + 7 isopentenyl diphosphate = 7 diphosphate + all-trans-nonaprenyl diphosphate. [EC:2.5.1.84, RHEA:27566];Catalysis of the reaction: all-trans-octaprenyl diphosphate + isopentenyl diphosphate = all-trans-nonaprenyl diphosphate + diphosphate. [RHEA:11327];The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0279702-01","NA","NA","-Inf","OS12G0279702",null,0,1.03979728993955,0,0,"no","OS12G0279702","Os12g0279702 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y914]","Conserved hypothetical protein. (Os12t0279702-01)",12,10522532,10525270]
["OS12T0299300-02","NA","NA","Inf","OS12G0299300",null,0,0,0,0.0176054732741164,"no","OS12G0299300","Os12g0299300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9C3]","Conserved hypothetical protein. (Os12t0299300-01);Conserved hypothetical protein. (Os12t0299300-02)",12,11904703,11907272]
["OS12T0422800-01","NA","NA","NA","OS12G0422800",null,0,0,0,0,"no","OS12G0422800","Os12g0422800 protein [Source:UniProtKB/TrEMBL;Acc:C7J9J2]","Conserved hypothetical protein. (Os12t0422800-01)",12,13328428,13329690]
["OS12T0437932-00","NA","NA","NA","OS12G0437932",null,0,0,0,0,"no","OS12G0437932","Os12g0437932 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9U2]","Hypothetical conserved gene. (Os12t0437932-00)",12,14419117,14419367]
["OS12T0461300-00","NA","NA","NA","OS12G0461300",null,0,0,0,0,"no","OS12G0461300","Os12g0461300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y9W1]","Similar to Phenylalanine ammonia-lyase. (Os12t0461300-00)",12,16274616,16275535,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS12T0465800-00","NA","NA",1.74510719985105,"OS12G0465800",null,2.03850783885231,0,3.90282026698787,2.93066084935005,"no","OS12G0465800","Os12g0465800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YA22]","Conserved hypothetical protein. (Os12t0465800-00)",12,16506143,16507816]
["OS12T0483600-00","NA","NA","NA","OS12G0483600",null,0,0,0,0,"no","OS12G0483600","Os12g0483600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YA73]","Hypothetical conserved gene. (Os12t0483600-00)",12,17824764,17825520]
["OS12T0504050-00","NA","NA",-0.0771889239384107,"OS12G0504050",null,0,2.05866052682091,1.95141013349393,0,"no","OS12G0504050","Photosystem II reaction center protein Z [Source:Projected from Arabidopsis thaliana (ATCG00300) UniProtKB/Swiss-Prot;Acc:P56790]","Similar to Photosystem II reaction center protein Z. (Os12t0504050-00)",12,19292613,19292914,"GO:0042549;GO:0009539;GO:0009523;GO:0015979;GO:0009579;GO:0016020;GO:0016021;GO:0009535","photosystem II stabilization;photosystem II reaction center;photosystem II;photosynthesis;thylakoid;membrane;integral component of membrane;chloroplast thylakoid membrane","The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators];An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone. [GOC:kd, ISBN:0943088399];A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. [GOC:ds, GOC:mah, ISBN:0943088399, PMID:9821949];The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]"]
["OS12T0514300-01","NA","NA","Inf","OS12G0514300",null,0,0,0,3.80755149718708,"no","OS12G0514300",null,"Similar to UPF0497 membrane protein 9. (Os12t0514300-01);Uncharacterised protein family UPF0497, trans-membrane plant domain containing protein. (Os12t0514300-02)",12,19910584,19911475,"GO:0005886;GO:0016020;GO:0016021;","plasma membrane;membrane;integral component of membrane;","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS12T0539800-00","NA","NA","NA","OS12G0539800",null,0,0,0,0,"no","OS12G0539800","Os12g0539800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YAZ6]","Hypothetical conserved gene. (Os12t0539800-00)",12,21571604,21572838]
["OS12T0552550-00","NA","NA","-Inf","OS12G0552550",null,0,14.676279766369401,0,0,"no","OS12G0552550","Os12g0552550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBD0]","Hypothetical gene. (Os12t0552550-00)",12,22429631,22431733]
["OS12T0561500-00","NA","NA","NA","OS12G0561500",null,0,0,0,0,"no","OS12G0561500","Os12g0561500 protein [Source:UniProtKB/TrEMBL;Acc:Q2QNL2]","Pectinesterase inhibitor domain containing protein. (Os12t0561500-00)",12,23000258,23000963,"GO:0071944;GO:0046910;GO:0030599;GO:0043086;GO:0004857","cell periphery;pectinesterase inhibitor activity;pectinesterase activity;negative regulation of catalytic activity;enzyme inhibitor activity","The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. [GOC:mah];Stops, prevents or reduces the activity of any pectinesterase enzyme. [GOC:ai, PMID:10880981];Catalysis of the reaction: pectin + n H2O = n methanol + pectate. [EC:3.1.1.11];Any process that stops or reduces the activity of an enzyme. [GOC:ebc, GOC:jl, GOC:tb, GOC:vw];Binds to and stops, prevents or reduces the activity of an enzyme. [GOC:ai, GOC:ebc]"]
["OS12T0563000-00","NA","NA","NA","OS12G0563000",null,0,0,0,0,"no","OS12G0563000","Os12g0563000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBI3]","Phospholipid/glycerol acyltransferase domain containing protein. (Os12t0563000-00)",12,23091540,23094141,"GO:0016311;GO:0010143;GO:0090447;GO:0016791;GO:0016020;GO:0016746;GO:0008152;GO:0016021;GO:0016740","dephosphorylation;cutin biosynthetic process;glycerol-3-phosphate 2-O-acyltransferase activity;phosphatase activity;membrane;transferase activity, transferring acyl groups;metabolic process;integral component of membrane;transferase activity","The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:0028623819];Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = CoA + a 2-acyl-sn-glycerol 3-phosphate. [EC:2.3.1.198];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0568700-00","NA","NA","NA","OS12G0568700",null,0,0,0,0,"no","OS12G0568700","CASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBH1]","Uncharacterised protein family UPF0497, trans-membrane plant domain containing protein. (Os12t0568700-00)",12,23399038,23399785,"GO:0005886;GO:0016020;GO:0016021","plasma membrane;membrane;integral component of membrane","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0569500-01","NA","NA","NA","OS12G0569500",null,0,0,0,0,"no","OS12G0569500","Os12g0569500 protein [Source:UniProtKB/TrEMBL;Acc:Q2QND6]","Thaumatin, pathogenesis-related family protein. (Os12t0569500-01)",12,23435458,23436485]
["OS12T0569700-02","NA","NA","-Inf","OS12G0569700",null,0,3.27841492913122,0,0,"no","OS12G0569700","Os12g0569700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBH9]","Similar to Heat shock protein 70. (Os12t0569700-01);Non-protein coding transcript. (Os12t0569700-02);Similar to Heat shock protein 70. (Os12t0569700-03)",12,23442171,23447194,"GO:0005524;GO:0000166;","ATP binding;nucleotide binding;","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];"]
["OS12T0570600-00","NA","NA","Inf","OS12G0570600",null,0,0,13.6598709344575,0.218422577376422,"no","OS12G0570600","Os12g0570600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBN6]","Hypothetical protein. (Os12t0570600-00)",12,23494475,23499181]
["OS12T0571400-00","NA","NA","NA","OS12G0571400",null,0,0,0,0,"no","OS12G0571400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QNC0]","Conserved hypothetical protein. (Os12t0571400-00)",12,23524209,23524834]
["OS12T0571500-01","NA","NA","NA","OS12G0571500",null,0,0,0,0,"no","OS12G0571500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QNB9]","Conserved hypothetical protein. (Os12t0571500-01)",12,23526524,23527156]
["OS12T0572601-01","NA","NA","NA","OS12G0572601",null,0,0,0,0,"no","OS12G0572601","Os12g0572601 protein [Source:UniProtKB/TrEMBL;Acc:B9GDW1]","Hypothetical gene. (Os12t0572601-01)",12,23602746,23604587]
["OS12T0572700-00","NA","NA","NA","OS12G0572700",null,0,0,0,0,"no","OS12G0572700","Exostosin family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QNA7]","Exostosin-like domain containing protein. (Os12t0572700-00)",12,23602840,23604420,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0572750-00","NA","NA",-0.207590662496378,"OS12G0572750",null,1.25884403672287,3.2326225850225,0.22935334064794702,3.66017697091863,"no","OS12G0572750","Os12g0572750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBN4]","Hypothetical protein. (Os12t0572750-00)",12,23606947,23608522]
["OS12T0572800-00","NA","NA",0.7117822691625111,"OS12G0572800",null,1.7989177215556,0,1.72205679284599,1.22425777799812,"no","OS12G0572800","Os12g0572800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBS5]","RNA-Recognition-Motif (RRM) protein, Regulation of the premeiotic G1/S-phase transition of germ cells (Os12t0572800-01)",12,23607073,23612729,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS12T0574000-01","NA","NA","NA","OS12G0574000",null,0,0,0,0,"no","OS12G0574000","Amino acid transporter family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN95]","Amino acid transporter, transmembrane domain containing protein. (Os12t0574000-01)",12,23687585,23691107,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0574500-01","NA","NA","NA","OS12G0574500",null,0,0,0,0,"no","OS12G0574500","Os12g0574500 protein [Source:UniProtKB/TrEMBL;Acc:Q0IME5]","Hypothetical protein. (Os12t0574500-01)",12,23708301,23709505]
["OS12T0577733-00","NA","NA","NA","OS12G0577733",null,0,0,0,0,"no","OS12G0577733","Os12g0577733 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBQ9]","Hypothetical gene. (Os12t0577733-00)",12,23886397,23887139,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0577766-00","NA","NA","NA","OS12G0577766",null,0,0,0,0,"no","OS12G0577766",null,"Hypothetical protein. (Os12t0577766-00)",12,23887598,23888545]
["OS12T0577900-00","NA","NA","NA","OS12G0577900",null,0,0,0,0,"no","OS12G0577900","Os12g0577900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KU95]","Hypothetical protein. (Os12t0577900-00)",12,23912869,23914600]
["OS12T0578200-01","NA","NA",0.923684588309824,"OS12G0578200",null,0,1.02933026341046,0.9757050667469671,0.9768869497833491,"no","OS12G0578200","Chorismate mutase, chloroplast, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN58]","Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1). (Os12t0578200-01)",12,23918907,23923365,"GO:0005737;GO:0009073;GO:0008652;GO:0016853;GO:0046417;GO:0004106","cytoplasm;aromatic amino acid family biosynthetic process;cellular amino acid biosynthetic process;isomerase activity;chorismate metabolic process;chorismate mutase activity","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid. [ISBN:0198506732];Catalysis of the reaction: chorismate = prephenate. [EC:5.4.99.5, RHEA:13900]"]
["OS12T0579450-00","NA","NA",2.25963046762487,"OS12G0579450",null,1.01925391942615,0,2.9271152002409,1.9537738995667,"no","OS12G0579450","Os12g0579450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC96]","Hypothetical gene. (Os12t0579450-00)",12,23983517,23992683]
["OS12T0582666-00","NA","NA","NA","OS12G0582666",null,0,0,0,0,"no","OS12G0582666","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN17]","Cytochrome P450 family protein. (Os12t0582666-00)",12,24180594,24182306,"GO:0044550;GO:0016020;GO:0016709;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0582900-01","NA","NA",-0.5267316431787561,"OS12G0582900",null,7.1347774359830805,4.11732105364182,3.90282026698787,3.9075477991334,"no","OS12G0582900","Os12g0582900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBP3]","Similar to AP2 domain containing protein, expressed. (Os12t0582900-01)",12,24202762,24204188,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0583300-01","NA","NA","NA","OS12G0583300",null,0,0,0,0,"no","OS12G0583300","Eukaryotic aspartyl protease family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN11]","Peptidase aspartic, catalytic domain containing protein. (Os12t0583300-01)",12,24212538,24214065,"GO:0030163;GO:0006508;GO:0004190;GO:0016787;GO:0008233","protein catabolic process;proteolysis;aspartic-type endopeptidase activity;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS12T0583500-02","NA","NA",0.132137690807818,"OS12G0583500",null,4.25672564812624,4.3254092393902,8.37830872669051,1.02699326343418,"no","OS12G0583500","Os12g0583500 protein [Source:UniProtKB/TrEMBL;Acc:Q2QN08]","BTB domain containing protein. (Os12t0583500-01);Conserved hypothetical protein. (Os12t0583500-02)",12,24218375,24224960]
["OS12T0583801-01","NA","NA","Inf","OS12G0583801",null,0,0,0.9819462310874871,1.97392864921438,"no","OS12G0583801","Os12g0583801 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC91]","Conserved hypothetical protein. (Os12t0583801-01)",12,24238425,24243743]
["OS12T0586500-01","NA","NA","-Inf","OS12G0586500",null,1.02156549034239,0,0,0,"no","OS12G0586500","Os12g0586500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCM5]","Hypothetical protein. (Os12t0586500-01)",12,24485242,24485916,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0586600-02","NA","NA","NA","OS12G0586600","ACA10",0,0,0,0,"no","OS12G0586600","Calcium-transporting ATPase 10, plasma membrane-type [Source:UniProtKB/Swiss-Prot;Acc:Q2QMX9]","Similar to Plasma membrane Ca2+-ATPase. (Os12t0586600-01);Similar to Type IIB calcium ATPase MCA5. (Os12t0586600-02)",12,24485299,24490983,"GO:0005388;GO:0043231;GO:0005887;GO:0005516;GO:0006816;GO:0070588;GO:0099132;GO:0046872;GO:0006810;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","calcium-transporting ATPase activity;intracellular membrane-bounded organelle;integral component of plasma membrane;calmodulin binding;calcium ion transport;calcium ion transmembrane transport;ATP hydrolysis coupled cation transmembrane transport;metal ion binding;transport;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). [EC:3.6.3.8];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0587100-00","NA","NA",0.104255593373654,"OS12G0587100",null,4.07701567770462,5.00201952226115,7.80564053397574,1.9537738995667,"no","OS12G0587100","Os12g0587100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUA3]","Similar to RSSG8. (Os12t0587100-00)",12,24514584,24518724,"GO:0015074;GO:0003723;GO:0003676;GO:0008270","DNA integration;RNA binding;nucleic acid binding;zinc ion binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS12T0588200-00","NA","NA","NA","OS12G0588200",null,0,0,0,0,"no","OS12G0588200","Os12g0588200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCL1]","Hypothetical protein. (Os12t0588200-00)",12,24589162,24591131]
["OS12T0588400-00","NA","NA",-1.8735471400195,"OS12G0588400",null,5.09626959713077,2.05866052682091,0.9757050667469671,0.9768869497833491,"no","OS12G0588400","Os12g0588400 protein [Source:UniProtKB/TrEMBL;Acc:C7J9K2]","Conserved hypothetical protein. (Os12t0588400-00)",12,24595783,24596141]
["OS12T0589898-00","NA","NA","NA","OS12G0589898",null,0,0,0,0,"no","OS12G0589898","Os12g0589898 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCF4]","Similar to 2-isopropylmalate synthase B. (Os12t0589898-00)",12,24670685,24671065,"GO:0003852;GO:0009098","2-isopropylmalate synthase activity;leucine biosynthetic process","Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+). [EC:2.3.3.13, RHEA:21527];The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai]"]
["OS12T0590066-00","NA","NA","-Inf","OS12G0590066",null,1.18396074505211,0,0,0,"no","OS12G0590066","Os12g0590066 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBV3]","Hypothetical conserved gene. (Os12t0590066-00)",12,24687073,24687559]
["OS12T0590550-00","NA","NA","NA","OS12G0590550",null,0,0,0,0,"no","OS12G0590550","Os12g0590550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBR2]","Hypothetical gene. (Os12t0590550-00)",12,24722843,24723389]
["OS12T0590700-00","NA","NA","NA","OS12G0590700",null,0,0,0,0,"no","OS12G0590700","Dof-type zinc finger protein 17 [Source:UniProtKB/TrEMBL;Acc:C7DQE7]","Similar to Dof domain, zinc finger family protein. (Os12t0590700-00)",12,24724344,24724451,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0591300-01","NA","NA","NA","OS12G0591300",null,0,0,0,0,"no","OS12G0591300","Os12g0591300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC05]","Similar to B3 domain-containing protein LOC_Os12g40080. (Os12t0591300-01)",12,24777228,24778938,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0591500-00","NA","NA",-0.48752681423527205,"OS12G0591500",null,1.01925391942615,3.08799079023137,0.9757050667469671,1.9537738995667,"no","OS12G0591500","Os12g0591500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD97]","Transcriptional factor B3 domain containing protein. (Os12t0591500-00)",12,24780961,24786307,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0591600-01","NA","NA",0.150917072746089,"OS12G0591600",null,2.03850783885231,4.11732105364182,2.9271152002409,3.9075477991334,"no","OS12G0591600","Os12g0591600 protein [Source:UniProtKB/TrEMBL;Acc:Q0IM76]","Conserved hypothetical protein. (Os12t0591600-01)",12,24793181,24796415,"GO:0005634;GO:0006355;GO:0006351;GO:0003677","nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS12T0592300-00","NA","NA","NA","OS12G0592300",null,0,0,0,0,"no","OS12G0592300","Os12g0592300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC10]","Transcriptional factor B3 domain containing protein. (Os12t0592300-00)",12,24818070,24820116,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0592400-00","NA","NA","NA","OS12G0592400",null,0,0,0,0,"no","OS12G0592400","Adenine phosphoribosyltransferase 1, putative [Source:UniProtKB/TrEMBL;Acc:Q2QMT1]","Similar to Adenine phosphoribosyltransferase 1. (Os12t0592400-00)",12,24821104,24822507,"GO:0009116;GO:0005737;GO:0016757;GO:0006168;GO:0003999;GO:0016740","nucleoside metabolic process;cytoplasm;transferase activity, transferring glycosyl groups;adenine salvage;adenine phosphoribosyltransferase activity;transferase activity","The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. [GOC:jl];Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate. [EC:2.4.2.7];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0592832-00","NA","NA","NA","OS12G0592832",null,0,0,0,0,"no","OS12G0592832","Os12g0592832 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCF2]","Hypothetical protein. (Os12t0592832-00)",12,24869115,24870044]
["OS12T0593300-00","NA","NA","Inf","OS12G0593300",null,0,0,0,0.9768869497833491,"no","OS12G0593300","Os12g0593300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUA8]","Hypothetical conserved gene. (Os12t0593300-00)",12,24884081,24885580,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0594700-00","NA","NA","Inf","OS12G0594700",null,0,0,0.9757050667469671,0,"no","OS12G0594700","Os12g0594700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC15]","Similar to F-box domain containing protein. (Os12t0594700-00)",12,24961949,24967283]
["OS12T0595200-00","NA","NA",-0.8039093204619191,"OS12G0595200",null,3.05776175827846,2.05866052682091,0,2.93066084935005,"no","OS12G0595200","Os12g0595200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCP0]","Similar to F-box domain containing protein. (Os12t0595200-00)",12,24984480,24985970]
["OS12T0595300-01","NA","NA","NA","OS12G0595300",null,0,0,0,0,"no","OS12G0595300","F-box domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QMQ7]","Conserved hypothetical protein. (Os12t0595300-01)",12,24994125,24996461]
["OS12T0595600-00","NA","NA",-0.0612499834381722,"OS12G0595600",null,1.01925391942615,0,0,0.9768869497833491,"no","OS12G0595600","Os12g0595600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC82]","Hypothetical conserved gene. (Os12t0595600-00)",12,25004455,25007073,"GO:0006511","ubiquitin-dependent protein catabolic process","The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]"]
["OS12T0595800-03","NA","NA","NA","OS12G0595800",null,0,0,0,0,"no","OS12G0595800","Os12g0595800 protein [Source:UniProtKB/TrEMBL;Acc:B7EKS1]","Similar to cDNA clone:J023098M23, full insert sequence. (Os12t0595800-01);Similar to Protein kinase domain containing protein, expressed. (Os12t0595800-02);Similar to cDNA clone:J023098M23, full insert sequence. (Os12t0595800-03);Protein kinase, core domain containing protein. (Os12t0595800-04)",12,25015035,25026459,"GO:0030247;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021;;GO:0007166;GO:0004674;GO:0005886","polysaccharide binding;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane;;cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];;A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363]"]
["OS12T0595900-00","NA","NA","-Inf","OS12G0595900",null,2.01263484378135,0,0,0,"no","OS12G0595900","Os12g0595900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCA6]","Hypothetical protein. (Os12t0595900-00)",12,25019104,25026183]
["OS12T0596201-00","NA","NA",-0.481012800116962,"OS12G0596201",null,3.05776175827846,1.02933026341046,1.95141013349393,0.9768869497833491,"no","OS12G0596201","Os12g0596201 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUB1]","Hypothetical protein. (Os12t0596201-00)",12,25035755,25036192]
["OS12T0597800-01","NA","NA","NA","OS12G0597800",null,0,0,0,0,"no","OS12G0597800","Helix-loop-helix DNA-binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QMN2]","Similar to Helix-loop-helix DNA-binding domain containing protein, expressed. (Os12t0597800-01)",12,25116029,25119760,"GO:0005634;GO:0046983;GO:0003677","nucleus;protein dimerization activity;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS12T0599400-00","NA","NA","NA","OS12G0599400",null,0,0,0,0,"no","OS12G0599400","Os12g0599400 protein [Source:UniProtKB/TrEMBL;Acc:C7J9P9]","Helix-loop-helix DNA-binding domain containing protein. (Os12t0599400-00)",12,25215052,25215504,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS12T0599550-00","NA","NA","NA","OS12G0599550",null,0,0,0,0,"no","OS12G0599550","Os12g0599550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCQ4]","Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0599550-00)",12,25216398,25218542,"GO:0005634;GO:0046983;GO:0003677","nucleus;protein dimerization activity;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS12T0600000-01","NA","NA","-Inf","OS12G0600000",null,0,2.05866052682091,0,0,"no","OS12G0600000","Os12g0600000 protein [Source:UniProtKB/TrEMBL;Acc:Q0IM44]","Conserved hypothetical protein. (Os12t0600000-01)",12,25241192,25242261]
["OS12T0600150-01","NA","NA",1.73369392233247,"OS12G0600150",null,0.6482788805085371,0,2.15603470565733,0,"no","OS12G0600150","Os12g0600150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBW7]","Hypothetical gene. (Os12t0600150-01)",12,25245673,25246136]
["OS12T0600301-00","NA","NA","NA","OS12G0600301",null,0,0,0,0,"no","OS12G0600301","Os12g0600301 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCU3]","Hypothetical protein. (Os12t0600301-00)",12,25249925,25253849]
["OS12T0602200-01","NA","NA","-Inf","OS12G0602200",null,0,1.02933026341046,0,0,"no","OS12G0602200","Os12g0602200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCJ8]","Conserved hypothetical protein. (Os12t0602200-01)",12,25345377,25346850]
["OS12T0603300-01","NA","NA","-Inf","OS12G0603300",null,0,6.3304147700336095,0,0,"no","OS12G0603300","AP2 domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QMI3]","Similar to AP2 domain containing protein, expressed. (Os12t0603300-01);Similar to AP2 domain containing protein, expressed. (Os12t0603300-02)",12,25414541,25418738,"GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0604200-00","NA","NA","NA","OS12G0604200",null,0,0,0,0,"no","OS12G0604200","Os12g0604200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUB7]","Similar to phosphoinositide binding. (Os12t0604200-00)",12,25484971,25492672]
["OS12T0604500-00","NA","NA","NA","OS12G0604500",null,0,0,0,0,"no","OS12G0604500","Os12g0604500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBZ1]","IQ motif, EF-hand binding site domain containing protein. (Os12t0604500-00)",12,25505322,25506810]
["OS12T0605850-00","NA","NA","-Inf","OS12G0605850",null,0,2.97333913847555,0,0,"no","OS12G0605850","Os12g0605850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUB9]","Hypothetical protein. (Os12t0605850-00)",12,25576556,25581486]
["OS12T0605900-01","NA","NA","NA","OS12G0605900",null,0,0,0,0,"no","OS12G0605900","Os12g0605900 protein [Source:UniProtKB/TrEMBL;Acc:Q2QMG1]","Similar to Kinase like protein. (Os12t0605900-01)",12,25583204,25586395,"GO:0004871;GO:0004672;GO:0006468;GO:0005622;GO:0035556;GO:0016310;GO:0016301;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular;intracellular signal transduction;phosphorylation;kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS12T0606000-00","NA","NA","NA","OS12G0606000",null,0,0,0,0,"no","OS12G0606000","Os12g0606000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCU6]","Similar to Protein kinase domain containing protein. (Os12t0606000-00)",12,25592586,25597136,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0608025-00","NA","NA","NA","OS12G0608025",null,0,0,0,0,"no","OS12G0608025","Os12g0608025 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCK0]","Hypothetical protein. (Os12t0608025-00)",12,25688476,25688867]
["OS12T0608700-00","NA","NA",-1.88006626623467,"OS12G0608700",null,4.07701567770462,10.2933026341046,2.9271152002409,0.9768869497833491,"no","OS12G0608700","Os12g0608700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC38]","Gnk2-homologous domain domain containing protein. (Os12t0608700-00)",12,25712030,25712683]
["OS12T0608900-00","NA","NA","-Inf","OS12G0608900",null,3.3276589460658,0,0,0,"no","OS12G0608900","Os12g0608900 protein [Source:UniProtKB/TrEMBL;Acc:Q2QMD1]","Protein of unknown function DUF26 domain containing protein. (Os12t0608900-00)",12,25718546,25720672,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0609000-00","NA","NA","NA","OS12G0609000",null,0,0,0,0,"no","OS12G0609000","Os12g0609000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBX1]","Conserved hypothetical protein. (Os12t0609000-00)",12,25722111,25722886]
["OS12T0609025-00","NA","NA","Inf","OS12G0609025",null,0,0,0.9757050667469671,0,"no","OS12G0609025","Os12g0609025 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBZ9]","Conserved hypothetical protein. (Os12t0609025-00)",12,25722806,25723804]
["OS12T0610100-01","NA","NA","-Inf","OS12G0610100",null,0,1.02933026341046,0,0,"no","OS12G0610100","Os12g0610100 protein [Source:UniProtKB/TrEMBL;Acc:Q2QMC0]","Conserved hypothetical protein. (Os12t0610100-01)",12,25764900,25765722]
["OS12T0611250-00","NA","NA","NA","OS12G0611250",null,0,0,0,0,"no","OS12G0611250",null,"Hypothetical gene. (Os12t0611250-00)",12,25831233,25832574]
["OS12T0611500-00","NA","NA","NA","OS12G0611500",null,0,0,0,0,"no","OS12G0611500","Os12g0611500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC41]","Similar to H0315A08.1 protein. (Os12t0611500-00)",12,25851429,25852257]
["OS12T0612625-00","NA","NA","NA","OS12G0612625",null,0,0,0,0,"no","OS12G0612625","Os12g0612625 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCH0]","Similar to Preprotein translocase, SecY subunit containing protein. (Os12t0612625-00)",12,25917389,25917832,"GO:0015031;GO:0016020;GO:0016021","protein transport;membrane;integral component of membrane","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0612850-00","NA","NA","NA","OS12G0612850",null,0,0,0,0,"no","OS12G0612850","Os12g0612850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC28]","Hypothetical protein. (Os12t0612850-00)",12,25920956,25927099]
["OS12T0613100-00","NA","NA","NA","OS12G0613100",null,0,0,0,0,"no","OS12G0613100","Os12g0613100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD22]","Similar to Amino acid permease family protein. (Os12t0613100-00)",12,25960810,25964140,"GO:0055085;GO:0006810;GO:0016020;GO:0016021","transmembrane transport;transport;membrane;integral component of membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0613150-00","NA","NA","-Inf","OS12G0613150",null,1.01925391942615,0,0,0,"no","OS12G0613150","Os12g0613150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUC8]","Hypothetical protein. (Os12t0613150-00)",12,25960847,25964139]
["OS12T0613200-01","NA","NA","NA","OS12G0613200",null,0,0,0,0,"no","OS12G0613200","Os12g0613200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QM91]","Hypothetical conserved gene. (Os12t0613200-01);Similar to Histone-lysine N-methyltransferase, H3 lysine-4 specific SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1). (Os12t0613200-02);Hypothetical conserved gene. (Os12t0613200-03)",12,25966692,25976050,"GO:0032259;GO:0008168;GO:0005634;GO:0016740","methylation;methyltransferase activity;nucleus;transferase activity","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0613500-02","NA","NA","NA","OS12G0613500",null,0,0,0,0,"no","OS12G0613500","Os12g0613500 protein [Source:UniProtKB/TrEMBL;Acc:Q2QM87]","SRP40, C-terminal domain containing protein. (Os12t0613500-01);Similar to SRP40, C-terminal domain containing protein, expressed. (Os12t0613500-02)",12,25990073,25993156]
["OS12T0613700-02","NA","NA",-4.33604882065331,"OS12G0613700","ARF25",0.009178151348356561,2.7459406183521803E-3,8.49413631592527e-05,0.000505456204052723,"no","OS12G0613700","Auxin response factor 25 [Source:UniProtKB/Swiss-Prot;Acc:Q2QM84]","Transcriptional factor B3 family protein. (Os12t0613700-01);Similar to Auxin response factor 25. (Os12t0613700-02)",12,26002370,26008343,"GO:0009725;GO:0003677;GO:0005634;GO:0009734;GO:0006355;GO:0006351","response to hormone;DNA binding;nucleus;auxin-activated signaling pathway;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:sm, PMID:16990790, PMID:18647826];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0614201-01","NA","NA","Inf","OS12G0614201",null,0,0,0,5.83905830888404,"no","OS12G0614201","Os12g0614201 protein [Source:UniProtKB/TrEMBL;Acc:B9GEA1]","Conserved hypothetical protein. (Os12t0614201-01)",12,26034075,26035437]
["OS12T0614500-00","NA","NA",-0.7636571460221481,"OS12G0614500",null,3.31709577331342,0,0,1.9537738995667,"no","OS12G0614500","Os12g0614500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC44]","Similar to Lipase family protein. (Os12t0614500-00)",12,26045658,26046857,"GO:0006629;GO:0016787","lipid metabolic process;hydrolase activity","The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS12T0614800-00","NA","NA",0.9147169930912261,"OS12G0614800",null,1.33905316685371,1.26242091096214,0,4.9042969143804,"no","OS12G0614800","Os12g0614800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD44]","Similar to cDNA clone:002-112-E04, full insert sequence. (Os12t0614800-00)",12,26073324,26074945,"GO:0030247;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","polysaccharide binding;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0615000-00","NA","NA","NA","OS12G0615000",null,0,0,0,0,"no","OS12G0615000","Os12g0615000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QM74]","Tyrosine protein kinase domain containing protein. (Os12t0615000-00)",12,26083058,26085962,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0615100-02","NA","NA",-2.04342771251699,"OS12G0615100",null,4.07701567770462,4.15854207074151,1.0209497254203,0.9768869497833491,"no","OS12G0615100","Os12g0615100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC18]","Similar to Protein kinase domain containing protein, expressed. (Os12t0615100-01);Hypothetical conserved gene. (Os12t0615100-02)",12,26087069,26090656,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0005509;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016310;GO:0016301","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;calcium ion binding;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;phosphorylation;kinase activity","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS12T0615150-00","NA","NA","NA","OS12G0615150",null,0,0,0,0,"no","OS12G0615150","Os12g0615150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC68]","Hypothetical protein. (Os12t0615150-00)",12,26088329,26090086]
["OS12T0615300-02","NA","NA","NA","OS12G0615300",null,0,0,0,0,"no","OS12G0615300","Os12g0615300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCF9]","Similar to Protein kinase domain containing protein, expressed. (Os12t0615300-01);Hypothetical conserved gene. (Os12t0615300-02)",12,26093652,26097724,"GO:0007166;GO:0004674;GO:0005886;GO:0030247;GO:0016310;GO:0016301;GO:0005509;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","cell surface receptor signaling pathway;protein serine/threonine kinase activity;plasma membrane;polysaccharide binding;phosphorylation;kinase activity;calcium ion binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0616150-00","NA","NA","NA","OS12G0616150",null,0,0,0,0,"no","OS12G0616150","Os12g0616150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUD3]","Hypothetical gene. (Os12t0616150-00)",12,26138332,26138815]
["OS12T0616800-01","NA","NA",0.775187869303639,"OS12G0616800",null,1.01925391942615,4.11732105364182,0.9757050667469671,7.81509559826679,"no","OS12G0616800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QM56]","Protein of unknown function DUF761, plant domain containing protein. (Os12t0616800-01)",12,26194568,26195981,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0617250-00","NA","NA","Inf","OS12G0617250",null,0,0,0,1.23334243188772,"no","OS12G0617250","Os12g0617250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC32]","Hypothetical gene. (Os12t0617250-00)",12,26268681,26270167]
["OS12T0618000-01","NA","NA","-Inf","OS12G0618000",null,1.01925391942615,0,0,0,"no","OS12G0618000","Os12g0618000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QM45]","Conserved hypothetical protein. (Os12t0618000-01)",12,26319872,26322202]
["OS12T0618366-00","NA","NA",-0.9963946846701061,"OS12G0618366",null,2.03850783885231,0,0,1.02180423470906,"no","OS12G0618366","Os12g0618366 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCZ1]","Hypothetical gene. (Os12t0618366-00)",12,26337444,26338006]
["OS12T0618400-02","NA","NA","NA","OS12G0618400",null,0,0,0,0,"no","OS12G0618400","Os12g0618400 protein [Source:UniProtKB/TrEMBL;Acc:Q0ILV4]","Conserved hypothetical protein. (Os12t0618400-01);Hypothetical conserved gene. (Os12t0618400-02)",12,26339257,26346047]
["OS12T0619100-00","NA","NA","NA","OS12G0619100",null,0,0,0,0,"no","OS12G0619100","Os12g0619100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD84]","Heat shock protein DnaJ, cysteine-rich domain domain containing protein. (Os12t0619100-00)",12,26377806,26379849,"GO:0031072;GO:0006457;GO:0051082;GO:0046872","heat shock protein binding;protein folding;unfolded protein binding;metal ion binding","Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock. [GOC:mah, GOC:vw];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS12T0619700-00","NA","NA","NA","OS12G0619700",null,0,0,0,0,"no","OS12G0619700","Os12g0619700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCB7]","Conserved hypothetical protein. (Os12t0619700-00)",12,26381679,26400289,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS12T0620100-00","NA","NA","NA","OS12G0620100",null,0,0,0,0,"no","OS12G0620100","Os12g0620100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YC54]","Zinc finger, RING-type domain containing protein. (Os12t0620100-00)",12,26420683,26421144,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0620400-04","NA","NA","Inf","OS12G0620400",null,0,0,1.01950609287886E-6,35.4983420154185,"no","OS12G0620400","Methyl-CpG binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QM23]","Methyl-CpG DNA binding domain containing protein. (Os12t0620400-01);Similar to Brain acid soluble protein 1 (Fragment). (Os12t0620400-02);Methyl-CpG DNA binding domain containing protein. (Os12t0620400-04)",12,26425353,26430083,"GO:0005634;GO:0003677","nucleus;DNA binding","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS12T0620733-00","NA","NA","NA","OS12G0620733",null,0,0,0,0,"no","OS12G0620733","Os12g0620733 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCJ5]","Hypothetical protein. (Os12t0620733-00)",12,26433411,26437992]
["OS12T0621100-01","NA","NA","NA","OS12G0621100","YAB6",0,0,0,0,"no","OS12G0621100","Protein YABBY 6 [Source:UniProtKB/Swiss-Prot;Acc:Q2QM17]","Similar to Filamentous flower-like yabby protein (Fragment). (Os12t0621100-01);Similar to Filamentous flower-like yabby protein (Fragment). (Os12t0621100-02)",12,26477638,26487296,"GO:0007275;GO:0046872;GO:0005634","multicellular organism development;metal ion binding;nucleus","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0621100-02","NA","NA",0.93744034286811,"OS12G0621100","YAB6",2.03850783885231,0,2.9271152002409,0.9768869497833491,"no","OS12G0621100","Protein YABBY 6 [Source:UniProtKB/Swiss-Prot;Acc:Q2QM17]","Similar to Filamentous flower-like yabby protein (Fragment). (Os12t0621100-01);Similar to Filamentous flower-like yabby protein (Fragment). (Os12t0621100-02)",12,26477638,26487296,"GO:0007275;GO:0046872;GO:0005634","multicellular organism development;metal ion binding;nucleus","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0621400-00","NA","NA","NA","OS12G0621400",null,0,0,0,0,"no","OS12G0621400","Os12g0621400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCP5]","Conserved hypothetical protein. (Os12t0621400-00)",12,26506314,26507238,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0621600-01","NA","NA",-1.07011015377051,"OS12G0621600",null,1.01925391942615,1.02933026341046,0.9757050667469671,0,"no","OS12G0621600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QM11]","Conserved hypothetical protein. (Os12t0621600-01)",12,26513858,26514636,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0621766-00","NA","NA",5.34169399219243,"OS12G0621766",null,0.0477049568056708,0.0054298588384746,1.60552558807444,0.54918674467909,"no","OS12G0621766","Os12g0621766 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCY2]","Hypothetical protein. (Os12t0621766-00)",12,26535052,26535566]
["OS12T0621832-00","NA","NA","NA","OS12G0621832",null,0,0,0,0,"no","OS12G0621832","Os12g0621832 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUD9]","Similar to H0315A08.1 protein. (Os12t0621832-00)",12,26543468,26544296]
["OS12T0621900-02","NA","NA","-Inf","OS12G0621900",null,0,17.4223999897934,0,0,"no","OS12G0621900","Mov34/MPN/PAD-1 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QM04]","Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-01);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-02);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-03);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-04)",12,26548466,26555878,"GO:0008180;GO:0000338;GO:0016020;GO:0016021","COP9 signalosome;protein deneddylation;membrane;integral component of membrane","A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. [PMID:11019806, PMID:12186635, PMID:14570571];The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0623950-00","NA","NA","Inf","OS12G0623950",null,0,0,4.41003976477487,0,"no","OS12G0623950","Os12g0623950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUE1]","Hypothetical protein. (Os12t0623950-00)",12,26646688,26649384]
["OS12T0624050-00","NA","NA","NA","OS12G0624050",null,0,0,0,0,"no","OS12G0624050","Os12g0624050 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCN8]","Hypothetical protein. (Os12t0624050-00)",12,26658472,26661206]
["OS12T0624200-00","NA","NA","-Inf","OS12G0624200",null,1.01925391942615,1.02933026341046,0,0,"no","OS12G0624200","Os12g0624200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCN6]","Similar to K-exchanger-like protein. (Os12t0624200-00)",12,26669155,26670534,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0624300-00","NA","NA","NA","OS12G0624300",null,0,0,0,0,"no","OS12G0624300","Os12g0624300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD01]","Hypothetical protein. (Os12t0624300-00)",12,26669216,26670920]
["OS12T0624400-01","NA","NA","NA","OS12G0624400",null,0,0,0,0,"no","OS12G0624400","Os12g0624400 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCB4]","Hypothetical conserved gene. (Os12t0624400-01)",12,26672423,26673742,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0624700-00","NA","NA","NA","OS12G0624700",null,0,0,0,0,"no","OS12G0624700","Os12g0624700 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLX8]","Protein of unknown function DUF1677, Oryza sativa domain containing protein. (Os12t0624700-00)",12,26684734,26685828]
["OS12T0626000-01","NA","NA",0.34601915320493204,"OS12G0626000",null,3.05776175827846,3.08799079023137,2.9271152002409,4.88443474891674,"no","OS12G0626000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QLW4]","Conserved hypothetical protein. (Os12t0626000-01)",12,26757490,26759185,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0626150-00","NA","NA","Inf","OS12G0626150",null,0,0,0.9757050667469671,0,"no","OS12G0626150","Os12g0626150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCW8]","Conserved hypothetical protein. (Os12t0626150-00)",12,26763811,26764359]
["OS12T0626400-02","NA","NA","NA","OS12G0626400",null,0,0,0,0,"no","OS12G0626400","Os12g0626400 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLV9]","Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5). (Os12t0626400-01);Similar to Phytoene synthase 2 (Fragment). (Os12t0626400-02)",12,26780492,26783584,"GO:0006696;GO:0051996;GO:0004310;GO:0016740;GO:0009058;GO:0016765;GO:0016020;GO:0016021","ergosterol biosynthetic process;squalene synthase activity;farnesyl-diphosphate farnesyltransferase activity;transferase activity;biosynthetic process;transferase activity, transferring alkyl or aryl (other than methyl) groups;membrane;integral component of membrane","The chemical reactions and pathways resulting in the formation of ergosterol, (22E)-ergosta-5,7,22-trien-3-beta-ol, a sterol found in ergot, yeast and moulds. [ISBN:0198506732];Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. [EC:2.5.1.21];Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. [EC:2.5.1.21];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0626450-00","NA","NA","-Inf","OS12G0626450",null,7.89585520691713,0,0,0,"no","OS12G0626450","Os12g0626450 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCP9]","Hypothetical protein. (Os12t0626450-00)",12,26780968,26783368]
["OS12T0626500-00","NA","NA","-Inf","OS12G0626500",null,1.01925391942615,0,0,0,"no","OS12G0626500","Os12g0626500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD55]","Similar to late embryogenesis abundant protein D-34. (Os12t0626500-00)",12,26793127,26793851]
["OS12T0629600-00","NA","NA","NA","OS12G0629600",null,0,0,0,0,"no","OS12G0629600","Os12g0629600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCG8]","Thaumatin-like protein. (Os12t0629600-00)",12,26932273,26933292]
["OS12T0630200-01","NA","NA","-Inf","OS12G0630200",null,0,1.03319592368548,0,0,"no","OS12G0630200","Os12g0630200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLS7]","Thaumatin, pathogenesis-related family protein. (Os12t0630200-01)",12,26960487,26961383]
["OS12T0630800-00","NA","NA",-0.48456525278919,"OS12G0630800",null,2.03850783885231,2.05866052682091,1.95141013349393,0.9768869497833491,"no","OS12G0630800","Os12g0630800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCR4]","Hypothetical conserved gene. (Os12t0630800-00)",12,27007607,27009616,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS12T0631800-02","NA","NA",20.5828214306791,"OS12G0631800",null,8.57466739162767e-06,2.07432745974173e-05,5.7389846131546205E-5,46.044693447141,"no","OS12G0631800","Amine oxidase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLR3]","Similar to predicted protein. (Os12t0631800-01);Phytoene dehydrogenase-like. (Os12t0631800-02);Phytoene dehydrogenase-like. (Os12t0631800-03)",12,27051976,27056972,"GO:0016491;GO:0055114;GO:0005507;GO:0005739;GO:0005622","oxidoreductase activity;oxidation-reduction process;copper ion binding;mitochondrion;intracellular","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS12T0633301-01","NA","NA",-0.0747427020818008,"OS12G0633301",null,1.06631699032472,0,1.0124801882092,0,"no","OS12G0633301","Os12g0633250 protein [Source:UniProtKB/TrEMBL;Acc:C7J9E6]","Conserved hypothetical protein. (Os12t0633301-01)",12,27134483,27135201]
["OS12T0633400-01","NA","NA",-0.0612499834381722,"OS12G0633400",null,1.01925391942615,0,0,0.9768869497833491,"no","OS12G0633400","Os12g0633400 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLQ1]","Similar to Pathogenesis-related protein PR-1 precursor. (Os12t0633400-01)",12,27145970,27147649,"GO:0005576","extracellular region","The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS12T0633501-00","NA","NA","NA","OS12G0633501",null,0,0,0,0,"no","OS12G0633501","Os12g0633501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCS2]","Similar to MYB36 (myb domain protein 36); DNA binding / transcription factor. (Os12t0633501-00)",12,27151981,27152307,"GO:0003677","DNA binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS12T0633650-00","NA","NA","Inf","OS12G0633650",null,0,0,11.0356173148328,0,"no","OS12G0633650","Os12g0633650 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD91]","Hypothetical protein. (Os12t0633650-00)",12,27154852,27159128]
["OS12T0633800-00","NA","NA","-Inf","OS12G0633800",null,0,2.05866052682091,0,0,"no","OS12G0633800","Os12g0633800 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLP7]","Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os12t0633800-00)",12,27168720,27169628,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0634500-00","NA","NA",-1.07144628294909,"OS12G0634500",null,3.05776175827846,5.14665131705228,2.9271152002409,0.9768869497833491,"no","OS12G0634500","BZIP transcription factor family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLP2]","bZIP transcription factor, bZIP-1 domain containing protein. (Os12t0634500-00)",12,27197343,27197872,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0634700-00","NA","NA","-Inf","OS12G0634700",null,1.01925391942615,0,0,0,"no","OS12G0634700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QLN9]","Similar to glycine-rich protein. (Os12t0634700-00)",12,27209219,27209842]
["OS12T0636200-02","NA","NA","NA","OS12G0636200",null,0,0,0,0,"no","OS12G0636200","Associated with HOX family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLM6]","Similar to Prep (Fragment). (Os12t0636200-01);Similar to Benzothiadiazole-induced homeodomain protein 1. (Os12t0636200-02);Similar to Benzothiadiazole-induced homeodomain protein 1. (Os12t0636200-03)",12,27271708,27276782,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0637400-01","NA","NA",0.34183737833571703,"OS12G0637400",null,1.02073860965454,5.15146409385944,3.91491461259247,3.9075477991334,"no","OS12G0637400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QLL6]","Similar to Purple acid phosphatase (EC 3.1.3.2) (Fragment). (Os12t0637400-01)",12,27316457,27317290,"GO:0003993;GO:0016311;GO:0046872;GO:0016787","acid phosphatase activity;dephosphorylation;metal ion binding;hydrolase activity","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS12T0637500-01","NA","NA",1.23099247141249,"OS12G0637500",null,0,1.26709246712479,1.38342462540922,1.59080138530221,"no","OS12G0637500","Os12g0637500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCH2]","Hypothetical protein. (Os12t0637500-01)",12,27324604,27326628,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0637900-00","NA","NA","NA","OS12G0637900",null,0,0,0,0,"no","OS12G0637900","CHCH domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QLL3]","CHCH domain containing protein. (Os12t0637900-00)",12,27336090,27337780,"GO:0005739;GO:0007005;GO:0005634","mitochondrion;mitochondrion organization;nucleus","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS12T0638200-01","NA","NA",-2.95488070445501,"OS12G0638200",null,6.26273305081751,2.25385170640343,0,1.09839297655882,"no","OS12G0638200","Os12g0638200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLL1]","Similar to Peptide transporter. (Os12t0638200-01);Non-protein coding transcript. (Os12t0638200-02)",12,27346140,27350659,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;","transport;transporter activity;membrane;integral component of membrane;","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS12T0638200-02","NA","NA",-3.35776152990327,"OS12G0638200",null,2.6331394197644302,6.13578847630688,0,0.855380923007875,"no","OS12G0638200","Os12g0638200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLL1]","Similar to Peptide transporter. (Os12t0638200-01);Non-protein coding transcript. (Os12t0638200-02)",12,27346140,27350659,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;","transport;transporter activity;membrane;integral component of membrane;","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];"]
["OS12T0638750-00","NA","NA","Inf","OS12G0638750",null,0,0,2.69412609620301,0,"no","OS12G0638750","Os12g0638750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD04]","Hypothetical protein. (Os12t0638750-00)",12,27387854,27393357]
["OS12T0639000-01","NA","NA","NA","OS12G0639000",null,0,0,0,0,"no","OS12G0639000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q0ILL1]","Hypothetical protein. (Os12t0639000-01)",12,27402825,27403416]
["OS12T0639150-00","NA","NA","NA","OS12G0639150",null,0,0,0,0,"no","OS12G0639150","Os12g0639150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCK5]","Hypothetical protein. (Os12t0639150-00)",12,27407448,27407898]
["OS12T0640000-00","NA","NA","NA","OS12G0640000",null,0,0,0,0,"no","OS12G0640000","Os12g0640000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QLJ4]","Conserved hypothetical protein. (Os12t0640000-00)",12,27443875,27444246]
["OS12T0640200-00","NA","NA",2.26032898136415,"OS12G0640200",null,1.01925391942615,0,0.9757050667469671,3.9075477991334,"no","OS12G0640200","Os12g0640200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YD70]","Similar to Cytochrome P450 family protein, expressed. (Os12t0640200-00)",12,27451260,27453035,"GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS12T0640950-00","NA","NA","-Inf","OS12G0640950",null,1.02577429956632,0,0,0,"no","OS12G0640950","Os12g0640950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUF9]","Hypothetical protein. (Os12t0640950-00)",12,27492090,27492473]
["OS12T0640951-00","NA","NA","Inf","OS12G0640951",null,0,0,4.55756355167098,0,"no","OS12G0640951","Os12g0640951 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YDB9]","Hypothetical protein. (Os12t0640951-00)",12,27487285,27490927]
["OS12T0641200-01","NA","NA",0.24039448293631,"OS12G0641200",null,1.71156219794087,2.93606566412349,1.79920980328105,3.69110563259183,"no","OS12G0641200","Os12g0641200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YCM0]","Hypothetical protein. (Os12t0641200-01)",12,27512303,27513696]
["OS12T0641500-02","NA","NA","Inf","OS12G0641500",null,0,0,30.8064486169644,0,"no","OS12G0641500","Os12g0641500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KUG0]","Similar to SMC1 protein. (Os12t0641500-01);Similar to SMC1 protein. (Os12t0641500-02);Similar to RecF/RecN/SMC N terminal domain containing protein, expressed. (Os12t0641500-03)",12,27518828,27529682,"GO:0005694;GO:0051276;GO:0008278;GO:0007064;GO:0003682;GO:0046982;GO:0005634;GO:0005524","chromosome;chromosome organization;cohesin complex;mitotic sister chromatid cohesion;chromatin binding;protein heterodimerization activity;nucleus;ATP binding","A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome. [GOC:ai, GOC:dph, GOC:jl, GOC:mah];A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3). [GOC:jl, GOC:sp, GOC:vw, PMID:9887095];The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. [GOC:ai, GOC:rn, PMID:10827941, PMID:11389843, PMID:14623866];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS01T0608101-00",5.6710082101611994E-7,2.87404458847831E-3,3.27554217913585,"OS01G0608101",null,738.996656821917,828.241739461322,7822.61574408258,7353.88022957352,"up","OS01G0608101","Os01g0608101 protein [Source:UniProtKB/TrEMBL;Acc:C7IWA4]","Conserved hypothetical protein. (Os01t0608101-00)",1,24004176,24006793]
["OS01T0689451-02",5.15326291895317e-07,2.87404458847831E-3,2.51860952296669,"OS01G0689451",null,1064.77805166666,1128.08987196704,6172.40158630798,6393.37947913483,"up","OS01G0689451","Hemerythrin motif-containing really interesting new gene (RING)-and zinc-finger protein 1 [Source:UniProtKB/TrEMBL;Acc:V9G2Z0]","Similar to predicted protein. (Os01t0689451-01);Similar to predicted protein. (Os01t0689451-02)",1,28447888,28458988,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS02T0306401-00",5.811982006580749E-7,2.87404458847831E-3,3.3352314626033,"OS02G0306401",null,4204.42241763289,4436.41343529906,40981.5642135061,46227.2673506979,"up","OS02G0306401","Os02g0306401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VI36]","Similar to Nicotianamine aminotransferase A. (Os02t0306401-00)",2,11997254,12002625,"GO:0008483;GO:0006520;GO:0030170;GO:0009058;GO:0003824;GO:0016740","transaminase activity;cellular amino acid metabolic process;pyridoxal phosphate binding;biosynthetic process;catalytic activity;transferase activity","Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0650300-02",4.3110177154854003E-7,2.87404458847831E-3,2.85576457069462,"OS02G0650300","YSL15",2432.66112946584,2410.2911417857,16750.0803563999,18307.4230817155,"up","OS02G0650300","Iron-phytosiderophore transporter YSL15 [Source:UniProtKB/Swiss-Prot;Acc:Q6H3Z3]","Iron-phytosiderophore transporter, Iron homeostasis (Os02t0650300-01);Similar to Iron-phytosiderophore transporter YSL15. (Os02t0650300-02)",2,26200136,26204468,"GO:0055085;GO:0016020;GO:0016021;GO:0055072;GO:0048316;GO:0005886;GO:0006810;GO:0006811;GO:0051980;GO:0010039;GO:0015688","transmembrane transport;membrane;integral component of membrane;iron ion homeostasis;seed development;plasma membrane;transport;ion transport;iron-nicotianamine transmembrane transporter activity;response to iron ion;iron chelate transport","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm];The directed movement of iron chelates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. [GOC:ai]"]
["OS02T0650300-01",6.4688071213050906E-7,2.87404458847831E-3,3.34965552032887,"OS02G0650300","YSL15",851.37499892523,744.922945386201,8000.04814963331,8272.69393493961,"up","OS02G0650300","Iron-phytosiderophore transporter YSL15 [Source:UniProtKB/Swiss-Prot;Acc:Q6H3Z3]","Iron-phytosiderophore transporter, Iron homeostasis (Os02t0650300-01);Similar to Iron-phytosiderophore transporter YSL15. (Os02t0650300-02)",2,26200136,26204468,"GO:0055085;GO:0016020;GO:0016021;GO:0055072;GO:0048316;GO:0005886;GO:0006810;GO:0006811;GO:0051980;GO:0010039;GO:0015688","transmembrane transport;membrane;integral component of membrane;iron ion homeostasis;seed development;plasma membrane;transport;ion transport;iron-nicotianamine transmembrane transporter activity;response to iron ion;iron chelate transport","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm];The directed movement of iron chelates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. [GOC:ai]"]
["OS09T0453800-01",6.1541365681440794E-7,2.87404458847831E-3,3.14508598527239,"OS09G0453800",null,3337.55531370126,3400.18159684377,28241.9910941363,31362.5391447503,"up","OS09G0453800","Aminotransferase [Source:UniProtKB/TrEMBL;Acc:Q67UZ0]","1-aminocyclopropane-1-carboxylate synthase family protein. (Os09t0453800-01);Similar to Asparate aminotransferase.(Os09t0453800-02)",9,17024575,17028546,"GO:0008483;GO:0030170;GO:0009058;GO:0003824;GO:0016740;GO:0016829;GO:0009507","transaminase activity;pyridoxal phosphate binding;biosynthetic process;catalytic activity;transferase activity;lyase activity;chloroplast","Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS12T0428000-01",6.58494112311735e-07,2.87404458847831E-3,2.76410412658159,"OS12G0428000",null,351.642602202023,356.148271140018,2444.14119220115,2364.0664184757,"up","OS12G0428000","Os12g0428000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QSI2]","Similar to senescence-associated protein DIN1. (Os12t0428000-01)",12,13657101,13658736]
["OS09T0130300-01",7.5499986372757e-07,0.00288334447957559,2.68238218774739,"OS09G0130300",null,589.009130963977,638.503002564578,3818.31459529327,4061.26944732934,"up","OS09G0130300","Os09g0130300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKZ4]","Hypothetical protein. (Os09t0130300-01)",9,2320603,2322832]
["OS03T0161800-02",1.16609652779355E-6,0.00333351454839943,2.40496012642177,"OS03G0161800","ARD2",2865.22876991454,2729.02833015119,14098.4776817022,15529.8785832081,"up","OS03G0161800","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q10RE5]","Similar to SIPL. (Os03t0161800-01);Similar to 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2. (Os03t0161800-02)",3,3338349,3341034,"GO:0010309;GO:0055114;GO:0006555;GO:0019509;GO:0009086;GO:0005506;GO:0008652;GO:0005737;GO:0051213;GO:0046872;GO:0016491;GO:0005634","acireductone dioxygenase [iron(II)-requiring] activity;oxidation-reduction process;methionine metabolic process;L-methionine salvage from methylthioadenosine;methionine biosynthetic process;iron ion binding;cellular amino acid biosynthetic process;cytoplasm;dioxygenase activity;metal ion binding;oxidoreductase activity;nucleus","Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 4-methylthio-2-oxobutanoate + formate + H(+). [EC:1.13.11.54, RHEA:24507];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS05T0551000-01",1.16449095473852E-6,0.00333351454839943,2.13105908303748,"OS05G0551000",null,774.975272897551,744.261877176577,3365.52780592422,3289.3223058149,"up","OS05G0551000","Os05g0551000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPZ3]","Zinc finger, RING-type domain containing protein. (Os05t0551000-01)",5,27377539,27382166,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0258400-01",1.20020489763007e-06,0.00333351454839943,3.81381627287174,"OS07G0258400","NRAMP1",928.142769275956,1106.67809727052,13972.215313833,14643.1489461768,"up","OS07G0258400","Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q0D7E4]","OsNramp1 (Integral membrane protein). (Os07t0258400-01);Similar to Metal transporter. (Os07t0258400-02);Integral membrane protein, Metal ion transport (Os07t0258400-03)",7,8966025,8970856,"GO:0006810;GO:0005215;GO:0016020;GO:0016021;GO:0055072;GO:0034755;GO:0005381;GO:0006811","transport;transporter activity;membrane;integral component of membrane;iron ion homeostasis;iron ion transmembrane transport;iron ion transmembrane transporter activity;ion transport","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];A process in which an iron ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other. [GOC:ai];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS04T0675000-01",1.4416590440362898E-6,3.3881205471843704E-3,2.57931470058202,"OS04G0675000",null,1443.2544581221,1560.09566181456,8516.73853518013,9432.95577554029,"up","OS04G0675000","Os04g0675000 protein [Source:UniProtKB/TrEMBL;Acc:B9FDA0]","Similar to H0103C06.5 protein. (Os04t0675000-01);Hypothetical gene. (Os04t0675000-02);Non-protein coding transcript. (Os04t0675000-03)",4,34457067,34463729]
["OS05T0554000-01",1.41737901849872E-6,3.3881205471843704E-3,3.46607556189296,"OS05G0554000",null,549.584256335975,612.517283614834,5993.3342575212,6848.78764384973,"up","OS05G0554000","Os05g0554000 protein [Source:UniProtKB/TrEMBL;Acc:Q6I630]","Similar to cDNA clone:001-123-D07, full insert sequence. (Os05t0554000-01);Similar to predicted protein. (Os05t0554000-02)",5,27542128,27545922,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0952800-01",4.3558816789309594E-6,0.00430821685708245,3.44112055843131,"OS01G0952800",null,1325.44362061181,1635.71311737397,15456.9976899365,16704.9175140735,"up","OS01G0952800","Os01g0952800 protein [Source:UniProtKB/TrEMBL;Acc:Q0JFZ0]","Achaete-scute transcription factor related domain containing protein. (Os01t0952800-01);Conserved hypothetical protein. (Os01t0952800-02)",1,41971444,41978093,"GO:0090575;GO:0005634;GO:0006357;GO:0003700;GO:0000977;GO:0046983;GO:0003677","RNA polymerase II transcription factor complex;nucleus;regulation of transcription from RNA polymerase II promoter;transcription factor activity, sequence-specific DNA binding;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;DNA binding","A transcription factor complex that acts at promoters of genes transcribed by RNA polymerase II. [GOC:tb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS02T0594166-01",3.92995287312648e-06,0.00430821685708245,3.82945157015258,"OS02G0594166",null,352.145805349329,347.901832159329,4838.04588251892,5113.88575021089,"up","OS02G0594166","Os02g0594166 protein [Source:UniProtKB/TrEMBL;Acc:C7IYA4]","Conserved hypothetical protein. (Os02t0594166-01)",2,23008659,23011091]
["OS02T0714600-01",4.2493367488757796E-6,0.00430821685708245,3.40775778092064,"OS02G0714600",null,748.196080228763,877.182383850099,7969.07113265585,9281.03657728544,"up","OS02G0714600","Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZFT5]","Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4). (Os02t0714600-01);Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4). (Os02t0714600-02)",2,29625540,29627758,"GO:0009165;GO:0004749;GO:0016310;GO:0016301;GO:0009116;GO:0000287;GO:0046872;GO:0005524;GO:0000166;GO:0016740;GO:0005737;GO:0005829;GO:0005886;GO:0009506","nucleotide biosynthetic process;ribose phosphate diphosphokinase activity;phosphorylation;kinase activity;nucleoside metabolic process;magnesium ion binding;metal ion binding;ATP binding;nucleotide binding;transferase activity;cytoplasm;cytosol;plasma membrane;plasmodesma","The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). [GOC:go_curators];Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). [EC:2.7.6.1, RHEA:15612];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS03T0161800-01",3.92841084521893e-06,0.00430821685708245,2.61211782142578,"OS03G0161800","ARD2",1780.53059482987,1795.90750780118,10032.6600290838,11833.7017671733,"up","OS03G0161800","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q10RE5]","Similar to SIPL. (Os03t0161800-01);Similar to 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2. (Os03t0161800-02)",3,3338349,3341034,"GO:0010309;GO:0055114;GO:0006555;GO:0019509;GO:0009086;GO:0005506;GO:0008652;GO:0005737;GO:0051213;GO:0046872;GO:0016491;GO:0005634","acireductone dioxygenase [iron(II)-requiring] activity;oxidation-reduction process;methionine metabolic process;L-methionine salvage from methylthioadenosine;methionine biosynthetic process;iron ion binding;cellular amino acid biosynthetic process;cytoplasm;dioxygenase activity;metal ion binding;oxidoreductase activity;nucleus","Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 4-methylthio-2-oxobutanoate + formate + H(+). [EC:1.13.11.54, RHEA:24507];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products. [DOI:10.1016/S0040-4020(03)00944-X, GOC:bf, http://www.onelook.com/];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators]"]
["OS03T0439700-01",3.34842049448963e-06,0.00430821685708245,4.66342814128115,"OS03G0439700",null,102.944645862042,134.84226450677,2870.52430636958,3155.34484780022,"up","OS03G0439700","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10J01]","Protein of unknown function DUF1230 family protein. (Os03t0439700-01)",3,18575450,18577554,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0542200-01",2.1490252750067703E-6,0.00430821685708245,1.75828939206887,"OS04G0542200",null,1469.76415181251,1459.59031351603,4792.97762281609,5116.93384296518,"up","OS04G0542200","Os04g0542200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WDA4]","Similar to H0501D11.7 protein. (Os04t0542200-01)",4,27154339,27158799,"GO:0048316;GO:0005886;GO:0006810;GO:0055085;GO:0016020;GO:0016021;GO:0051980;GO:0010039;GO:0015688","seed development;plasma membrane;transport;transmembrane transport;membrane;integral component of membrane;iron-nicotianamine transmembrane transporter activity;response to iron ion;iron chelate transport","The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm];The directed movement of iron chelates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. [GOC:ai]"]
["OS04T0628100-02",3.06965349113826e-06,0.00430821685708245,2.00642272486537,"OS04G0628100",null,10341.8194191936,10172.8253976014,41924.0159290859,40500.6937867808,"up","OS04G0628100","Os04g0628100 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9W6]","Similar to Polyubiquitin. (Os04t0628100-01);Similar to Polyubiquitin. (Os04t0628100-02)",4,31962541,31965069,"GO:0005737;GO:0005634;GO:0010224;GO:0005773","cytoplasm;nucleus;response to UV-B;vacuole","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm. [GOC:tb];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS04T0669800-01",4.23615879531403e-06,0.00430821685708245,2.64886005265863,"OS04G0669800","MTK1",4563.77569500973,4860.22988548782,27210.9135479685,31893.7656937889,"up","OS04G0669800","Methylthioribose kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XR61]","Methylthioribose kinase (EC 2.7.1.100). (Os04t0669800-01)",4,34155536,34158649,"GO:0009086;GO:0046522;GO:0019509;GO:0016310;GO:0008652;GO:0016301;GO:0005524;GO:0000166;GO:0016740","methionine biosynthetic process;S-methyl-5-thioribose kinase activity;L-methionine salvage from methylthioadenosine;phosphorylation;cellular amino acid biosynthetic process;kinase activity;ATP binding;nucleotide binding;transferase activity","The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Catalysis of the reaction: S-methyl-5-thio-D-ribose + ATP = S-methyl-5-thio-alpha-D-ribose 1-phosphate + ADP + 2 H(+). [EC:2.7.1.100, RHEA:22315];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0669900-00",3.8168698945615092E-6,0.00430821685708245,3.18655897584102,"OS04G0669900",null,787.307381977576,952.398111991026,7662.7369477016,8176.18321242447,"up","OS04G0669900","Os04g0669900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WG91]","Similar to H0818H01.11 protein. (Os04t0669900-00)",4,34161628,34164342,"GO:0009086;GO:0046522;GO:0019509;GO:0016310;GO:0008652;GO:0016301;GO:0005524;GO:0000166;GO:0016740","methionine biosynthetic process;S-methyl-5-thioribose kinase activity;L-methionine salvage from methylthioadenosine;phosphorylation;cellular amino acid biosynthetic process;kinase activity;ATP binding;nucleotide binding;transferase activity","The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Catalysis of the reaction: S-methyl-5-thio-D-ribose + ATP = S-methyl-5-thio-alpha-D-ribose 1-phosphate + ADP + 2 H(+). [EC:2.7.1.100, RHEA:22315];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0112700-01",4.69564944177226e-06,0.00430821685708245,1.57403577217791,"OS08G0112700","MADS26",1554.36222712489,1454.44366219897,4625.81772144737,4332.49362228915,"up","OS08G0112700","MADS-box transcription factor 26 [Source:UniProtKB/Swiss-Prot;Acc:Q0J8G8]","MADS-box transcription factor, Regulator of both biotic and abiotic stress responses (Os08t0112700-01)",8,679358,681703,"GO:0045944;GO:0000977;GO:0046983;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","positive regulation of transcription from RNA polymerase II promoter;RNA polymerase II regulatory region sequence-specific DNA binding;protein dimerization activity;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. [GOC:go_curators, GOC:txnOH];Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. [GOC:txnOH];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0442600-01",2.82180028142122e-06,0.00430821685708245,1.82181342413041,"OS09G0442600",null,1345.41517364252,1355.62795691157,5003.41558227845,4545.45497734192,"up","OS09G0442600","Os09g0442600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XMC2]","Similar to Plastid (P)ppGpp synthase. (Os09t0442600-01)",9,16455568,16458585,"GO:0009507;GO:0015969;GO:0005525;GO:0016310;GO:0016301;GO:0009536;GO:0005524;GO:0000166;GO:0016020;GO:0016021;GO:0016740;GO:0008728","chloroplast;guanosine tetraphosphate metabolic process;GTP binding;phosphorylation;kinase activity;plastid;ATP binding;nucleotide binding;membrane;integral component of membrane;transferase activity;GTP diphosphokinase activity","A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. [GOC:ai];Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate. [EC:2.7.6.5]"]
["OS10T0195250-01",4.6839761363253e-06,0.00430821685708245,3.6727165283678502,"OS10G0195250",null,504.196779740796,627.746330113058,6834.88976053941,7600.29812266552,"up","OS10G0195250","Os10g0195250 protein [Source:UniProtKB/TrEMBL;Acc:B9G7W2]","Conserved hypothetical protein. (Os10t0195250-01)",10,6597058,6599557]
["OS11T0151500-01",2.43987507826489e-06,0.00430821685708245,1.66313925815474,"OS11G0151500",null,2074.18172603222,2093.65775577687,6405.50376319384,6794.24873574319,"up","OS11G0151500","Os11g0151500 protein [Source:UniProtKB/TrEMBL;Acc:Q0IUK3]","Major facilitator superfamily protein. (Os11t0151500-01)",11,2413598,2417423,"GO:0071013;GO:0055085;GO:0005215;GO:0000398;GO:0003723;GO:0016021;GO:0071006;GO:0016020","catalytic step 2 spliceosome;transmembrane transport;transporter activity;mRNA splicing, via spliceosome;RNA binding;integral component of membrane;U2-type catalytic step 1 spliceosome;membrane","A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:0198506732, ISBN:0879695897];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A spliceosomal complex that is formed by the displacement of the U1 and U4 snRNPs from the precatalytic spliceosome; the U2, U5 and U6 snRNPs remain associated with the mRNA. This complex, sometimes called the activated spliceosome, is the catalytically active form of the spliceosome, and includes many proteins in addition to those found in the U2, and U5 and U6 snRNPs. [GOC:ab, GOC:krc, GOC:mah, ISBN:0879695897, ISBN:0879697393, PMID:18322460, PMID:19239890];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0216900-02",2.55515965880616e-06,0.00430821685708245,2.62085501679792,"OS11G0216900","IDI2",323.205581244105,343.307769344946,1968.36576438412,2131.45459053599,"up","OS11G0216900","Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q0ITU1]","Similar to IDI2. (Os11t0216900-01);Similar to IDI2. (Os11t0216900-02);Similar to IDI2. (Os11t0216900-03)",11,6102863,6106487,"GO:0046523;GO:0019509;GO:0044249;GO:0009086;GO:0044237;GO:0008652;GO:0005737;GO:0016853;GO:0005634;GO:0003743;GO:0006413;GO:0071281;GO:0071369;GO:0071732;GO:0009506;GO:0019284","S-methyl-5-thioribose-1-phosphate isomerase activity;L-methionine salvage from methylthioadenosine;cellular biosynthetic process;methionine biosynthetic process;cellular metabolic process;cellular amino acid biosynthetic process;cytoplasm;isomerase activity;nucleus;translation initiation factor activity;translational initiation;cellular response to iron ion;cellular response to ethylene stimulus;cellular response to nitric oxide;plasmodesma;L-methionine salvage from S-adenosylmethionine","Catalysis of the reaction: S-methyl-5-thio-alpha-D-ribose 1-phosphate = S-methyl-5-thio-D-ribulose 1-phosphate. [EC:5.3.1.23, RHEA:19992];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:jl];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways by which individual cells transform chemical substances. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of L-methionine from S-adenosylmethionine. [GOC:go_curators, GOC:vw]"]
["OS11T0484000-01",3.82472088170603e-06,0.00430821685708245,3.33005514637918,"OS11G0484000",null,10586.9904610795,12481.6587741152,108449.618168925,123540.054330452,"up","OS11G0484000","Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Source:UniProtKB/Swiss-Prot;Acc:Q2R483]","Class II aldolase/adducin, N-terminal family protein. (Os11t0484000-01)",11,17036933,17044163,"GO:0043874;GO:0019509;GO:0009086;GO:0003824;GO:0008152;GO:0008652;GO:0016311;GO:0000287;GO:0046872;GO:0016787;GO:0005737;GO:0046570;GO:0016829","acireductone synthase activity;L-methionine salvage from methylthioadenosine;methionine biosynthetic process;catalytic activity;metabolic process;cellular amino acid biosynthetic process;dephosphorylation;magnesium ion binding;metal ion binding;hydrolase activity;cytoplasm;methylthioribulose 1-phosphate dehydratase activity;lyase activity","Catalysis of the reactions: 5-(methylthio)-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate; (1a) 5-(methylthio)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate; (1b) 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate. [EC:3.1.3.77];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: S-methyl-5-thio-D-ribulose 1-phosphate = 5-(methylthio)-2,3-dioxopentyl phosphate + H(2)O. [EC:4.2.1.109, RHEA:15552];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS12T0568350-01",2.62177607147125e-06,0.00430821685708245,2.20103125609678,"OS12G0568350",null,609.919728776593,550.088399582632,2604.20712858617,2729.60189644565,"up","OS12G0568350","Os12g0568350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0YBH5]","Hypothetical gene. (Os12t0568350-01)",12,23390252,23395621,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0568500-01",4.6276959588307595E-6,0.00430821685708245,2.2101305049378,"OS12G0568500",null,14244.9533105933,12884.5679232254,62064.4002494715,63468.5414222479,"up","OS12G0568500","Metallothionein-like protein 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QNE5]","Metallothionein-like protein type 1. (Os12t0568500-01)",12,23390501,23391407,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS02T0788800-01",5.3246487341645791E-6,0.00464796194646275,3.13504374107172,"OS02G0788800",null,109.98266393361,111.352755699311,911.52837704351,1032.90524523045,"up","OS02G0788800","Amino acid transporter-like [Source:UniProtKB/TrEMBL;Acc:Q6K4N6]","Amino acid transporter, transmembrane domain containing protein. (Os02t0788800-01);Similar to amino acid transporter family protein. (Os02t0788800-02)",2,33511971,33517881,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0439924-01",5.92598711347149e-06,0.00502918773029947,3.99104762707789,"OS10G0439924",null,71.7080574732447,90.9526319172262,1197.1182566877,1389.35301186802,"up","OS10G0439924","Cytochrome P450 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q7XE28]","Cytochrome P450 family protein. (Os10t0439924-01)",10,15806654,15811018,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS05T0554000-02",6.3750760375312095E-6,0.0051255611341751,3.18935237158537,"OS05G0554000",null,210.779167555936,256.237458703591,2158.68157514971,2101.45059006531,"up","OS05G0554000","Os05g0554000 protein [Source:UniProtKB/TrEMBL;Acc:Q6I630]","Similar to cDNA clone:001-123-D07, full insert sequence. (Os05t0554000-01);Similar to predicted protein. (Os05t0554000-02)",5,27542128,27545922,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0453800-02",6.3383645726182095E-6,0.0051255611341751,3.06750731515038,"OS09G0453800",null,2132.78047185891,2428.91568484964,17451.2528866909,20790.5244433334,"up","OS09G0453800","Aminotransferase [Source:UniProtKB/TrEMBL;Acc:Q67UZ0]","1-aminocyclopropane-1-carboxylate synthase family protein. (Os09t0453800-01);Similar to Asparate aminotransferase.(Os09t0453800-02)",9,17024575,17028546,"GO:0008483;GO:0030170;GO:0009058;GO:0003824;GO:0016740;GO:0016829;GO:0009507","transaminase activity;pyridoxal phosphate binding;biosynthetic process;catalytic activity;transferase activity;lyase activity;chloroplast","Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. [ISBN:0198506732];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS02T0611200-01",8.60912577504603e-06,0.005260520213584131,1.75593860204486,"OS02G0611200",null,1135.74008164629,1092.70678569621,3855.2438525569,3671.24587907869,"up","OS02G0611200","S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:Q6K9B8]","S-adenosylmethionine decarboxylase, Polyamine biosynthesis, Abiotic stress (Os02t0611200-01);Similar to S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S- adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain]. (Os02t0611200-02);Similar to S-adenosylmethionine decarboxylase 2. (Os02t0611200-03)",2,24045244,24048294,"GO:0008295;GO:0006597;GO:0004014;GO:0005829;GO:0006557;GO:0016831;GO:0006596;GO:0016829","spermidine biosynthetic process;spermine biosynthetic process;adenosylmethionine decarboxylase activity;cytosol;S-adenosylmethioninamine biosynthetic process;carboxy-lyase activity;polyamine biosynthetic process;lyase activity","The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. [CHEBI:15746, GOC:curators];Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2). [EC:4.1.1.50, RHEA:15984];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. [GOC:mah, MetaCyc:S-ADENOSYLMETHIONINAMINE];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS02T0731900-01",7.0393663506733e-06,0.005260520213584131,3.54138654229157,"OS02G0731900",null,51.7101499261467,61.4014219662696,611.456308236259,705.497714502816,"up","OS02G0731900","Os02g0731900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KG16]","Similar to 3-ketoacyl-CoA synthase. (Os02t0731900-01)",2,30500236,30502286,"GO:0016746;GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring acyl groups;fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0439800-01",7.33505496441908e-06,0.005260520213584131,2.22061404370814,"OS03G0439800",null,697.227545351019,619.114122362473,2895.19398500357,3240.16621432494,"up","OS03G0439800","Os03g0439800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DQW9]","Protein of unknown function DUF1909 domain containing protein. (Os03t0439800-01);Similar to predicted protein. (Os03t0439800-02)",3,18579735,18598590]
["OS06T0112200-01",7.83586097112442e-06,0.005260520213584131,2.17573451821039,"OS06G0112200",null,2773.38991475857,2924.32727834911,11884.0877129781,13859.0951565764,"up","OS06G0112200","Methylthioadenosine/S-adenosyl homocysteine nucleosidase [Source:UniProtKB/TrEMBL;Acc:Q9LHZ0]","Purine and other phosphorylases, family 1 protein. (Os06t0112200-01)",6,692774,695655,"GO:0008152;GO:0016798;GO:0009116;GO:0016787;GO:0003824;GO:0008782","metabolic process;hydrolase activity, acting on glycosyl bonds;nucleoside metabolic process;hydrolase activity;catalytic activity;adenosylhomocysteine nucleosidase activity","The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenine + S-D-ribosyl-L-homocysteine. [EC:3.2.2.9]"]
["OS10T0567400-03",8.41233584282715e-06,0.005260520213584131,1.74426766325457,"OS10G0567400","CAO",611.216927654713,687.77272598103,2227.99974552201,2123.93704719113,"up","OS10G0567400","Chlorophyllide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S7E1]","Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-03)",10,22482882,22486431,"GO:0010277;GO:0051537;GO:0016705;GO:0005506;GO:0016491;GO:0055114;GO:0031969;GO:0051536;GO:0015995;GO:0009579;GO:0009536;GO:0009535;GO:0009507;GO:0046872;GO:0016020","chlorophyllide a oxygenase [overall] activity;2 iron, 2 sulfur cluster binding;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidoreductase activity;oxidation-reduction process;chloroplast membrane;iron-sulfur cluster binding;chlorophyll biosynthetic process;thylakoid;plastid;chloroplast thylakoid membrane;chloroplast;metal ion binding;membrane","Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+; and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+. [EC:1.13.12.14, MetaCyc:RXN-7677];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS11T0216900-03",7.9650671222822391E-6,0.005260520213584131,2.28875131779661,"OS11G0216900","IDI2",1877.36363079696,2214.57793523004,9750.82779231369,10243.7492893195,"up","OS11G0216900","Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q0ITU1]","Similar to IDI2. (Os11t0216900-01);Similar to IDI2. (Os11t0216900-02);Similar to IDI2. (Os11t0216900-03)",11,6102863,6106487,"GO:0046523;GO:0019509;GO:0044249;GO:0009086;GO:0044237;GO:0008652;GO:0005737;GO:0016853;GO:0005634;GO:0003743;GO:0006413;GO:0071281;GO:0071369;GO:0071732;GO:0009506;GO:0019284","S-methyl-5-thioribose-1-phosphate isomerase activity;L-methionine salvage from methylthioadenosine;cellular biosynthetic process;methionine biosynthetic process;cellular metabolic process;cellular amino acid biosynthetic process;cytoplasm;isomerase activity;nucleus;translation initiation factor activity;translational initiation;cellular response to iron ion;cellular response to ethylene stimulus;cellular response to nitric oxide;plasmodesma;L-methionine salvage from S-adenosylmethionine","Catalysis of the reaction: S-methyl-5-thio-alpha-D-ribose 1-phosphate = S-methyl-5-thio-D-ribulose 1-phosphate. [EC:5.3.1.23, RHEA:19992];The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. [GOC:jl, MetaCyc:PWY-4361];The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:jl];The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];The chemical reactions and pathways by which individual cells transform chemical substances. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. [ISBN:0198506732];The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. [ISBN:019879276X];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of L-methionine from S-adenosylmethionine. [GOC:go_curators, GOC:vw]"]
["OS12T0570700-01",8.13094149004566e-06,0.005260520213584131,5.27707441427961,"OS12G0570700","MT4A",1161.34395944979,1667.14129004791,50150.6092542652,59525.391605132,"up","OS12G0570700","Metallothionein-like protein [Source:UniProtKB/TrEMBL;Acc:A1L4T7]","Similar to Metallothionein-like protein type 1. (Os12t0570700-01)",12,23501423,23502359,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS12T0589100-01",8.5057041571599091E-6,0.005260520213584131,2.38081829404668,"OS12G0589100",null,12544.9772402971,13490.4024322574,62174.853968317,73425.7538065659,"up","OS12G0589100","Adenine phosphoribosyltransferase 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QMV8]","Similar to Adenine phosphoribosyltransferase. (Os12t0589100-01)",12,24637078,24639791,"GO:0005829;GO:0009116;GO:0005737;GO:0016757;GO:0006168;GO:0003999;GO:0016740","cytosol;nucleoside metabolic process;cytoplasm;transferase activity, transferring glycosyl groups;adenine salvage;adenine phosphoribosyltransferase activity;transferase activity","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. [GOC:jl];Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate. [EC:2.4.2.7];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0714600-02",9.1853847666914891E-6,5.39676683446074E-3,2.36573167222496,"OS02G0714600",null,3028.13969124514,3262.78393558675,14854.6217886892,17569.6781244597,"up","OS02G0714600","Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZFT5]","Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4). (Os02t0714600-01);Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4). (Os02t0714600-02)",2,29625540,29627758,"GO:0009165;GO:0004749;GO:0016310;GO:0016301;GO:0009116;GO:0000287;GO:0046872;GO:0005524;GO:0000166;GO:0016740;GO:0005737;GO:0005829;GO:0005886;GO:0009506","nucleotide biosynthetic process;ribose phosphate diphosphokinase activity;phosphorylation;kinase activity;nucleoside metabolic process;magnesium ion binding;metal ion binding;ATP binding;nucleotide binding;transferase activity;cytoplasm;cytosol;plasma membrane;plasmodesma","The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). [GOC:go_curators];Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). [EC:2.7.6.1, RHEA:15612];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS06T0486800-01",9.02536305732989e-06,5.39676683446074E-3,3.36846707453768,"OS06G0486800",null,4053.56472987938,4773.00033643787,40964.9760031411,50194.4025492385,"up","OS06G0486800","Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:Q0DC43]","Similar to Formate dehydrogenase, mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH). (Os06t0486800-01)",6,16649553,16653244,"GO:0042183;GO:0008863;GO:0051287;GO:0016616;GO:0005739;GO:0055114;GO:0016491;GO:0008152","formate catabolic process;formate dehydrogenase (NAD+) activity;NAD binding;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;mitochondrion;oxidation-reduction process;oxidoreductase activity;metabolic process","The chemical reactions and pathways resulting in the breakdown of formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid. [ISBN:0198506732];Catalysis of the reaction: formate + NAD(+) = CO(2) + NADH. [EC:1.2.1.2, RHEA:15988];Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684]"]
["OS09T0345300-01",9.81072945236324e-06,5.65542275903022E-3,3.03413220424902,"OS09G0345300",null,76.4440439569616,67.1683037424473,553.22477284553,623.179480817111,"up","OS09G0345300","Leucine-rich repeat family protein /protein kinase family protein-like [Source:UniProtKB/TrEMBL;Acc:Q6EQG8]","Similar to Receptor-like serine/threonine kinase. (Os09t0345300-01)",9,10785144,10793869,"GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0751100-01",1.0349331044408402E-5,0.00569174215982634,3.7804807367726,"OS03G0751100",null,296.658486221343,362.006096093608,4012.36934924886,5038.75248853983,"up","OS03G0751100","Oligopeptide transporter 3, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q75LM0]","Iron-deficiency-regulated oligopeptide transporter, Iron homeostasis (Os03t0751100-01);Similar to Glutathione transporter. (Os03t0751100-02)",3,30959746,30963711,"GO:0055085;GO:0016020;GO:0016021;GO:0046915;GO:0006875;GO:0055072;GO:1990388;GO:0005886;GO:0009506","transmembrane transport;membrane;integral component of membrane;transition metal ion transmembrane transporter activity;cellular metal ion homeostasis;iron ion homeostasis;xylem-to-phloem iron transport;plasma membrane;plasmodesma","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of transition metal ions from one side of a membrane to the other. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];Any process involved in the maintenance of an internal steady state of metal ions at the level of a cell. [GOC:ai, GOC:mah];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The directed movement of iron ions into the phloem from the xylem. [GOC:tb, PMID:24867923];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS11T0173550-01",1.0432625063834601E-5,0.00569174215982634,3.57650130897889,"OS11G0173550",null,36.6931410993416,40.1438802730078,438.95471224276,477.697718444058,"up","OS11G0173550","Os11g0173550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZB3]","Hypothetical conserved gene. (Os11t0173550-01)",11,3640348,3644132,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS12T0126200-01",1.04047523753434E-5,0.00569174215982634,2.09956519862026,"OS12G0126200",null,680.195882435452,783.284096765491,2991.85402166073,3280.33139238958,"up","OS12G0126200","Os12g0126200 protein [Source:UniProtKB/TrEMBL;Acc:Q2QYA8]","Engulfment and cell motility, ELM domain containing protein. (Os12t0126200-01)",12,1265812,1269154]
["OS01T0842200-02",1.16768678548438E-5,0.00589397342009979,1.98275453974176,"OS01G0842200",null,791.061275181009,809.119817406094,3214.58721021487,3110.08067312701,"up","OS01G0842200","Os01g0842200 protein [Source:UniProtKB/TrEMBL;Acc:Q5N9X3]","Similar to Scarecrow-like 9 (Fragment). (Os01t0842200-01);Similar to SCARECROW-like protein. (Os01t0842200-02)",1,36158308,36161507,"GO:0006355;GO:0006351;GO:0043565;GO:0005634;GO:0003700","regulation of transcription, DNA-templated;transcription, DNA-templated;sequence-specific DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH]"]
["OS02T0611200-03",1.19744487491676E-5,0.00589397342009979,1.24537628378525,"OS02G0611200",null,3203.44956143849,3473.1400349514,8020.79312968474,7808.0909526725,"up","OS02G0611200","S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:Q6K9B8]","S-adenosylmethionine decarboxylase, Polyamine biosynthesis, Abiotic stress (Os02t0611200-01);Similar to S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S- adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain]. (Os02t0611200-02);Similar to S-adenosylmethionine decarboxylase 2. (Os02t0611200-03)",2,24045244,24048294,"GO:0008295;GO:0006597;GO:0004014;GO:0005829;GO:0006557;GO:0016831;GO:0006596;GO:0016829","spermidine biosynthetic process;spermine biosynthetic process;adenosylmethionine decarboxylase activity;cytosol;S-adenosylmethioninamine biosynthetic process;carboxy-lyase activity;polyamine biosynthetic process;lyase activity","The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging. [CHEBI:15746, GOC:curators];Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2). [EC:4.1.1.50, RHEA:15984];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. [GOC:mah, MetaCyc:S-ADENOSYLMETHIONINAMINE];Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS03T0226200-01",1.1817000312320901E-5,0.00589397342009979,3.37639621381633,"OS03G0226200","HB2",904.222647435777,842.852923910509,7858.79964367032,10284.1639373964,"up","OS03G0226200","Non-symbiotic hemoglobin 2 [Source:UniProtKB/Swiss-Prot;Acc:O04985]","Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b). (Os03t0226200-01)",3,6624980,6626080,"GO:0019825;GO:0046872;GO:0006810;GO:0020037;GO:0005344;GO:0015671","oxygen binding;metal ion binding;transport;heme binding;oxygen transporter activity;oxygen transport","Interacting selectively and non-covalently with oxygen (O2). [GOC:jl];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];Enables the directed movement of oxygen into, out of or within a cell, or between cells. [GOC:ai];The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS04T0381700-00",1.17587038242078e-05,0.00589397342009979,2.36432433510916,"OS04G0381700",null,412.797837367592,425.113398788518,1950.43442842719,2364.0664184757,"up","OS04G0381700","Os04g0381700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KIY3]","Similar to OSIGBa0092E09.4 protein. (Os04t0381700-00)",4,18720467,18722735,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS04T0530700-01",1.2153715811282E-5,0.00589397342009979,1.14890674352838,"OS04G0530700",null,1207.81589451999,1217.69770161457,2638.3065004838,2740.16789414229,"up","OS04G0530700","Probable beta-D-xylosidase 6 [Source:Projected from Arabidopsis thaliana (AT5G10560) UniProtKB/Swiss-Prot;Acc:Q9LXA8]","Similar to Beta-D-xylosidase. (Os04t0530700-01)",4,26543241,26546917,"GO:0004553;GO:0005975;GO:0016787;GO:0005773;GO:0005774","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;vacuole;vacuolar membrane","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai]"]
["OS12T0420100-01",1.12058986537521e-05,0.00589397342009979,"Inf","OS12G0420100","BGLU38",0,0,219.533640018068,269.620798140204,"up","OS12G0420100","Beta-glucosidase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q2QSR8]","Similar to Beta-glucosidase. (Os12t0420100-01)",12,13099651,13102786,"GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787","glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS01T0655500-01",1.2784618517039903E-5,5.9181161353424805E-3,3.5866864945039802,"OS01G0655500",null,1134.62869690692,1533.54120417119,16322.3973707,15733.9252737177,"up","OS01G0655500","Probable plastid-lipid-associated protein 14, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G53450) UniProtKB/Swiss-Prot;Acc:Q9LV04]","Protein kinase, core domain containing protein. (Os01t0655500-01);Similar to protein kinase domain containing protein. (Os01t0655500-02)",1,26611799,26618704,"GO:0010468;GO:0007346;GO:0004693;GO:0006468;GO:0005634;GO:0005524;GO:0004672","regulation of gene expression;regulation of mitotic cell cycle;cyclin-dependent protein serine/threonine kinase activity;protein phosphorylation;nucleus;ATP binding;protein kinase activity","Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. This reaction requires the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK). [GOC:pr, GOC:rn, PMID:7877684, PMID:9841670];The process of introducing a phosphate group on to a protein. [GOC:hb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS02T0791300-01",1.24800972797563E-5,5.9181161353424805E-3,3.6905058262308,"OS02G0791300",null,34.6546332604892,43.2318710632392,509.318044841917,496.258570489941,"up","OS02G0791300","Os02g0791300 protein [Source:UniProtKB/TrEMBL;Acc:Q6KAE4]","Hypothetical conserved gene. (Os02t0791300-01)",2,33604348,33605999,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS07T0432201-01",1.2649702041365302E-5,5.9181161353424805E-3,2.37413179467412,"OS07G0432201",null,16201.1993150812,14083.6389052594,72938.7450549461,84065.0469991674,"up","OS07G0432201","Os07g0432201 protein [Source:UniProtKB/TrEMBL;Acc:Q6YTM0]","Similar to Thionin-like peptide. (Os07t0432201-01)",7,14292161,14292961]
["OS03T0307200-01",1.4281265938889602E-5,0.00651225726813365,3.50347580981279,"OS03G0307200","NAS2",5953.2683043235,7116.13373292444,65098.8982855251,83121.1756782932,"up","OS03G0307200","Nicotianamine synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q10MI9]","Nicotianamine synthase 2, Nicotianamine biosynthesis (Os03t0307200-01)",3,10926469,10927729,"GO:0030418;GO:0030410;GO:0016740","nicotianamine biosynthetic process;nicotianamine synthase activity;transferase activity","The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. [GOC:mah, PMID:10069850];Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H(+) + nicotianamine. [EC:2.5.1.43, RHEA:16484];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS08T0108700-00",1.5689625106792103E-5,0.00694709313424222,1.44582689883062,"OS08G0108700",null,1690.94225232799,1491.49955168175,4278.46671768545,4391.10683927615,"up","OS08G0108700","Os08g0108700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZC75]","Glycolipid transfer protein domain domain containing protein. (Os08t0108700-00)",8,435232,437034,"GO:0005737;GO:0120013;GO:0120009","cytoplasm;intermembrane lipid transfer activity;intermembrane lipid transfer","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Enables the removal of a lipid from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. [GOC:krc, PMID:20823909, PMID:24220498, PMID:25797198];The transport of lipids between membranes in which a lipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). [GOC:krc, PMID:20823909, PMID:24220498, PMID:25797198]"]
["OS03T0725200-01",1.69646523556896e-05,0.00730005716578915,4.2216664527515,"OS03G0725200",null,22.4235862273754,32.9385684291346,527.856441110109,505.050553037991,"up","OS03G0725200","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q6AU08]","Hypothetical protein. (Os03t0725200-01)",3,29479234,29479879]
["OS03T0307300-01",1.79062194635114e-05,7.5982057923499905E-3,3.44528178563201,"OS03G0307300","NAS1",5802.80640233776,7071.12528766188,61591.5261062348,78639.580562432,"up","OS03G0307300","Nicotianamine synthase 1 [Source:UniProtKB/TrEMBL;Acc:H9BE58]","Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1) (OsNAS1). (Os03t0307300-01)",3,10929507,10930895,"GO:0030418;GO:0030410;GO:0016740","nicotianamine biosynthetic process;nicotianamine synthase activity;transferase activity","The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. [GOC:mah, PMID:10069850];Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H(+) + nicotianamine. [EC:2.5.1.43, RHEA:16484];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS06T0700550-00",1.8560218599965903E-5,7.755326234578871E-3,1.05592117840117,"OS06G0700550",null,3859.91459286685,3608.83190351706,7863.20713291381,7664.65500800016,"up","OS06G0700550","Os06g0700550 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0P6]","Hypothetical protein. (Os06t0700550-00)",6,29473627,29474564,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0444100-00",1.93249127153248e-05,0.00787219644371471,3.94146231076877,"OS01G0444100",null,21.4043323079492,26.7625868486719,374.670745630835,365.355719218972,"up","OS01G0444100","Os01g0444100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V376]","Conserved hypothetical protein. (Os01t0444100-00)",1,16982700,16982963,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0519300-01",1.9761127095004103E-5,0.00790796426144384,3.93249268774525,"OS05G0519300",null,25.4813479856539,26.7625868486719,352.229529095655,445.460449101207,"up","OS05G0519300","Os05g0519300 protein [Source:UniProtKB/TrEMBL;Acc:Q65X09]","Protein of unknown function DUF506, plant family protein. (Os05t0519300-01)",5,25776481,25778593]
["OS04T0628100-01",2.1209668926401002E-5,0.007999972901721011,2.34758019732537,"OS04G0628100",null,147.306497772657,168.979574018619,765.655295712382,844.145449290606,"up","OS04G0628100","Os04g0628100 protein [Source:UniProtKB/TrEMBL;Acc:Q0J9W6]","Similar to Polyubiquitin. (Os04t0628100-01);Similar to Polyubiquitin. (Os04t0628100-02)",4,31962541,31965069,"GO:0005737;GO:0005634;GO:0010224;GO:0005773","cytoplasm;nucleus;response to UV-B;vacuole","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm. [GOC:tb];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732]"]
["OS01T0723400-01",2.17729122388602E-5,0.008112268472215321,1.28045918751129,"OS01G0723400",null,1837.85412413191,1843.63794501002,4267.59060364011,4675.35301860834,"up","OS01G0723400","Malic enzyme [Source:UniProtKB/TrEMBL;Acc:Q0JJQ7]","NADP-malic enzyme, Splicing variant (Os01t0723400-01);Similar to Malic enzyme. (Os01t0723400-02);NADP-malic enzyme, Salt and osmotic stress tolerance, Disease resistance (Os01t0723400-03);NADP-malic enzyme, Splicing variant (Os01t0723400-04);NADP-malic enzyme, Splicing variant (Os01t0723400-05)",1,30166017,30171643,"GO:0051287;GO:0004471;GO:0004470;GO:0055114;GO:0046872;GO:0016491;GO:0006108;GO:0006090;GO:0004473;GO:0009507","NAD binding;malate dehydrogenase (decarboxylating) (NAD+) activity;malic enzyme activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;malate metabolic process;pyruvate metabolic process;malate dehydrogenase (decarboxylating) (NADP+) activity;chloroplast","Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. [GOC:ai];Catalysis of the reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH + H+. [EC:1.1.1.38, EC:1.1.1.39];Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate. [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators];Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+. [EC:1.1.1.40];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS04T0139201-01",2.2289375186419702E-5,0.00820463844211439,3.24039394042292,"OS04G0139201",null,42.9543601613831,54.2594734631829,429.609792830696,489.111630593883,"up","OS04G0139201","Os04g0139201 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W6Q1]","Hypothetical gene. (Os04t0139201-01)",4,2690138,2695153]
["OS02T0244600-01",2.3125898960062704E-5,0.008385811570746641,0.968807827261239,"OS02G0244600",null,1686.86523665029,1755.00809911483,3308.61588133896,3427.89630678977,"up","OS02G0244600","Os02g0244600 protein [Source:UniProtKB/TrEMBL;Acc:Q6ESU4]","Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0244600-01)",2,8164661,8169145,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS03T0376100-02",2.35852623614709e-05,0.008385811570746641,1.05145189753088,"OS03G0376100",null,7609.33068902665,7927.41254424067,16126.2457034793,16075.4356809579,"up","OS03G0376100","Os03g0376100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VYR6]","Similar to Cystathionine gamma-synthase (Fragment). (Os03t0376100-01);Similar to Cystathionine gamma-synthase (Fragment). (Os03t0376100-02)",3,14850286,14852220,"GO:0030170;GO:0003824;GO:0016829","pyridoxal phosphate binding;catalytic activity;lyase activity","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS02T0159100-00",2.4146675989447604E-5,0.0084796464922943,"Inf","OS02G0159100",null,0,0,170.959018228129,223.842413815375,"up","OS02G0159100","Os02g0159100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VEX2]","Hypothetical protein. (Os02t0159100-00)",2,3212238,3216435,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0236100-00",2.58751118793239e-05,0.008882431664461841,3.56613355723655,"OS12G0236100",null,929.559574516653,1301.07345295082,14014.0518736867,12406.4642622485,"up","OS12G0236100","Os12g0236100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8Q6]","Hypothetical conserved gene. (Os12t0236100-00)",12,7441389,7446142]
["OS12T0567800-01",2.6686869637835005E-5,0.00905930267972373,1.04681061523438,"OS12G0567800",null,3023.4893688423,2749.78200195631,5930.34398018016,5996.98963223297,"up","OS12G0567800","Metallothionein-like protein 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QNF2]","Plant metallothionein, family 15 protein. (Os12t0567800-01)",12,23352196,23353175,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS02T0744700-01",2.7240544723416103E-5,0.009145638707580311,2.39362198109628,"OS02G0744700",null,123.515848879329,109.144810713279,581.339219420984,641.234256950542,"up","OS02G0744700","Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:Q0DXM0]","Similar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21). (Os02t0744700-01);Similar to Soluble starch synthase 2-2, chloroplastic/amyloplastic. (Os02t0744700-02)",2,31233292,31238210,"GO:0009501;GO:0019252;GO:0004373;GO:0009507;GO:0016757;GO:0033201;GO:0009011;GO:0009536;GO:0016740","amyloplast;starch biosynthetic process;glycogen (starch) synthase activity;chloroplast;transferase activity, transferring glycosyl groups;alpha-1,4-glucan synthase activity;starch synthase activity;plastid;transferase activity","A plastid whose main function is to synthesize and store starch. [ISBN:0140514031];The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai];Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.11];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: RDP-glucose + [alpha-D-glucosyl-(1,4)]n = RDP + [alpha-D-glucosyl-(1,4)]n+1, where RDP is ADP or UDP. [PMID:17472966];Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). [EC:2.4.1.21];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0495701-00",2.80439059426565E-5,0.009223964157773771,3.42491651366321,"OS01G0495701",null,418.533369809994,592.946879102203,5543.28238511778,5319.97351269433,"up","OS01G0495701","Os01g0495701 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V2W9]","Hypothetical conserved gene. (Os01t0495701-00)",1,16980463,16981993]
["OS03T0160400-01",2.80776599460906e-05,0.009223964157773771,1.4920617641490899,"OS03G0160400",null,256.851987695391,270.71385927695,722.021749392756,761.971820831012,"up","OS03G0160400","Probable RNA helicase SDE3 [Source:Projected from Arabidopsis thaliana (AT1G05460) UniProtKB/Swiss-Prot;Acc:Q8GYD9]","Similar to ACL098Cp. (Os03t0160400-01)",3,3215854,3220186,"GO:0004386;GO:0009616;GO:0035194","helicase activity;virus induced gene silencing;posttranscriptional gene silencing by RNA","Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];Specific posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. This silencing is triggered by viral infection, and occurs through a specific decrease in the level of mRNA of both host and viral genes. [GOC:jl];Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]"]
["OS11T0134900-01",2.95601475038609E-5,0.00950654343724165,3.45866505868531,"OS11G0134900",null,4692.40571252197,6674.5607386702,60419.2046635573,64551.0071245279,"up","OS11G0134900","Major facilitator superfamily antiporter, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAW8]","Similar to Major facilitator superfamily antiporter. (Os11t0134900-01)",11,1618494,1623978,"GO:0055085;GO:0005215;GO:0022857;GO:0016021;GO:0016020","transmembrane transport;transporter activity;transmembrane transporter activity;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0323600-01",3.0159632656454802E-5,0.00959830309291673,1.385380346937,"OS01G0323600","SAM2",6211.90048866748,6782.68276850239,16035.1919068756,17911.9640707585,"up","OS01G0323600","S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A0R7VIP9]","Similar to S-adenosylmethionine synthase 2. (Os01t0323600-01)",1,12363841,12366314,"GO:0004478;GO:0005829;GO:0006556;GO:0006730;GO:0005737;GO:0046872;GO:0005524;GO:0000166;GO:0016740","methionine adenosyltransferase activity;cytosol;S-adenosylmethionine biosynthetic process;one-carbon metabolic process;cytoplasm;metal ion binding;ATP binding;nucleotide binding;transferase activity","Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine. [EC:2.5.1.6];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. [GOC:go_curators, ISBN:0198506732];The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. [GOC:hjd, GOC:mah, GOC:pde];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS01T0871600-01",3.16597788510599e-05,9.77039963088467E-3,4.82940224510221,"OS01G0871600",null,108.519997600695,177.58012358903,3789.45473849422,4344.71027896721,"up","OS01G0871600","Os01g0871600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAZ6]","Similar to Peptide transporter PTR2-B. (Os01t0871600-01)",1,37795606,37797741,"GO:0006857;GO:0006810;GO:0005215;GO:0016020;GO:0016021","oligopeptide transport;transport;transporter activity;membrane;integral component of membrane","The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0482400-01",3.1075778714033207E-5,9.77039963088467E-3,2.85368025270734,"OS05G0482400","CYP714D1",46.8856802936031,41.1732105364182,308.314905414163,328.211705945651,"up","OS05G0482400","Cytochrome P450 714D1 [Source:UniProtKB/Swiss-Prot;Acc:Q5KQH7]","Cytochrome P450 monooxygenase, Gibberellin (GA)-deactivating enzyme, Modulation of internode elongation (Os05t0482400-01)",5,23728568,23738372,"GO:0004497;GO:0005789;GO:0005783;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0045487;GO:0016020;GO:0016021","monooxygenase activity;endoplasmic reticulum membrane;endoplasmic reticulum;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;gibberellin catabolic process;membrane;integral component of membrane","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0736900-01",3.26819033143329e-05,0.00998497510059499,1.9676215979468101,"OS03G0736900",null,325.142000296943,278.948501384234,1098.64390515708,1264.09171301965,"up","OS03G0736900","Os03g0736900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DNS7]","Similar to Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848. (Os03t0736900-01)",3,30204128,30204899]
["OS01T0191200-02",3.3163801392779605E-5,0.0100318857440812,6.20745745337239,"OS01G0191200",null,37.583486446274,57.6424947509855,2657.79198106413,4379.18850243417,"up","OS01G0191200","Os01g0191200 protein [Source:UniProtKB/TrEMBL;Acc:Q9LG77]","Similar to Acid phosphatase. (Os01t0191200-01);Similar to Acid phosphatase. (Os01t0191200-02)",1,4872158,4873806,"GO:0003993;GO:0016311","acid phosphatase activity;dephosphorylation","Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum. [EC:3.1.3.2];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS03T0390600-01",3.5009420918825304E-5,0.0104863512540387,23.0849897017312,"OS03G0390600","H3",0.000129655272851119,0,799.332814769794,354.291851264019,"up","OS03G0390600","Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q0JCT1]","Similar to Histone H3 (Fragment). (Os03t0390600-01);Similar to Histone H3.3. (Os03t0390600-02);Non-protein coding transcript. (Os03t0390600-03)",3,15645609,15648151,"GO:0005515;GO:0006334;GO:0005634;GO:0000786;GO:0005694;GO:0046982;GO:0003677;GO:0031492","protein binding;nucleosome assembly;nucleus;nucleosome;chromosome;protein heterodimerization activity;DNA binding;nucleosomal DNA binding","Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. [GOC:mah];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:elh];A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. [ISBN:0198547684];Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with the DNA portion of a nucleosome. [GOC:mah]"]
["OS01T0871500-01",4.00016427404196e-05,0.011476014061067,2.95344210483075,"OS01G0871500",null,979.301218861532,756.782107886083,6045.70944315432,7401.90441878961,"up","OS01G0871500","Os01g0871500 protein [Source:UniProtKB/TrEMBL;Acc:Q5N747]","TGF-beta receptor, type I/II extracellular region family protein. (Os01t0871500-01)",1,37790484,37792882,"GO:0006810;GO:0005215;GO:0016020;GO:0016021","transport;transporter activity;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0588800-00",4.0454514745206606E-5,0.011476014061067,2.00323710714548,"OS06G0588800",null,102.62581568544,107.768423815097,437.05883260742,406.408568868021,"up","OS06G0588800","Os06g0588800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WYQ5]","Protein kinase, catalytic domain domain containing protein. (Os06t0588800-00)",6,23093973,23097578,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS09T0133200-02",4.14251183459783e-05,0.011476014061067,1.9612135828856498,"OS09G0133200",null,2738.77303164324,2973.2204658611,9999.54951378098,12242.3472546849,"up","OS09G0133200","Short-chain dehydrogenase/reductase SDRA [Source:Projected from Arabidopsis thaliana (AT4G05530) UniProtKB/Swiss-Prot;Acc:Q9S9W2]","Similar to Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH- dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2. (Os09t0133200-01);Similar to Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH- dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2. (Os09t0133200-02)",9,2512448,2517177,"GO:0055114;GO:0016491;GO:0048767;GO:0080024;GO:0080026;GO:0005777","oxidation-reduction process;oxidoreductase activity;root hair elongation;indolebutyric acid metabolic process;response to indolebutyric acid;peroxisome","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The process in which the root hair grows longer. [GOC:jid, PMID:12468740];The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. [PMID:18725356];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [PMID:18725356];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS10T0388500-01",4.1329780556928104E-5,0.011476014061067,1.23804513140818,"OS10G0388500",null,358.26009873304,363.353582983891,879.490625952549,822.64232574077,"up","OS10G0388500","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q338Q5]","Conserved hypothetical protein. (Os10t0388500-01)",10,12834324,12843741,"GO:0000910;GO:0000226;GO:0008017","cytokinesis;microtubule cytoskeleton organization;microtubule binding","The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells. [GOC:mtg_cell_cycle];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc]"]
["OS12T0171801-01",4.16940809367123e-05,0.011476014061067,5.19481577458898,"OS12G0171801",null,48.948768397670904,87.5327261493118,2366.78242605158,2632.05646187989,"up","OS12G0171801","Os12g0171801 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y7L8]","Hypothetical gene. (Os12t0171801-01)",12,3644208,3653650]
["OS09T0512000-01",4.2092955321614407E-5,0.0114823568838032,3.01821152321882,"OS09G0512000",null,28.5391097439323,28.8212473754928,236.120626152766,228.591546249304,"up","OS09G0512000","Os09g0512000 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0G0]","SecY protein family protein. (Os09t0512000-01)",9,19917485,19920309,"GO:0015031;GO:0016020;GO:0016021","protein transport;membrane;integral component of membrane","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0186900-01",4.3603932725102004E-5,0.0117892686072329,0.9719315408916911,"OS11G0186900",null,750.17088469765,728.765826494603,1423.82942442585,1477.05306807242,"up","OS11G0186900","1-aminocyclopropane-1-carboxylate oxidase [Source:UniProtKB/TrEMBL;Acc:Q53P53]","ACC oxidase, Ethylene biosynthesis (Os11t0186900-01)",11,4415933,4418435,"GO:0009693;GO:0055114;GO:0046872;GO:0016491","ethylene biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity","The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:0387969845];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS01T0605100-01",4.4760376153023e-05,0.0119957808090102,1.47145273050697,"OS01G0605100",null,889.691894429775,1028.1930863661,2546.31427810218,2771.99962620716,"up","OS01G0605100","BCS1 protein-like [Source:UniProtKB/TrEMBL;Acc:Q5ZDA1]","Similar to BCS1 protein-like protein. (Os01t0605100-01)",1,23838868,23840725,"GO:0005524;GO:0000166","ATP binding;nucleotide binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS02T0219200-02",4.59925754528694E-5,0.0120119640072304,1.84454420334788,"OS02G0219200",null,366.864526923562,304.82273149063,1262.22779141954,1150.06624701758,"up","OS02G0219200","Os02g0219200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VGJ1]","Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid beta- galactosidase) (Exo-(1-->4)-beta-D-galactanase). (Os02t0219200-01);Similar to Beta-galactosidase. (Os02t0219200-02);Similar to Beta-galactosidase. (Os02t0219200-03)",2,6655868,6659388,"GO:0004553;GO:0005975;GO:0008152;GO:0016798;GO:0016787","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS02T0579800-01",4.6000254937351408E-5,0.0120119640072304,2.56668427933961,"OS02G0579800",null,490.26113524398,448.787994846959,2396.33164393055,3167.02974636011,"up","OS02G0579800","Os02g0579800 protein [Source:UniProtKB/TrEMBL;Acc:Q6EP48]","Similar to Fw2.2. (Os02t0579800-01)",2,22311834,22313012,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0431800-00",4.59007586232295E-5,0.0120119640072304,1.34382148005245,"OS03G0431800",null,705.323712242899,606.275525148759,1689.92117560575,1639.21630173646,"up","OS03G0431800","Os03g0431800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZP7]","Conserved hypothetical protein. (Os03t0431800-00)",3,18129996,18142854,"GO:0009793","embryo development ending in seed dormancy","The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]"]
["OS10T0498000-01",4.6911910622645505E-5,0.0121462092656192,1.04331225616427,"OS10G0498000",null,587.090257589465,592.894231724423,1264.51376650407,1167.3799049911,"up","OS10G0498000","Epoxide hydrolase, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8W3F1]","Similar to Epoxide hydrolase. (Os10t0498000-01)",10,18989312,18991116,"GO:0016787;GO:0003824","hydrolase activity;catalytic activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0655500-02",4.9507802736534504E-5,0.0122972551968016,4.04666871502523,"OS01G0655500",null,89.4952603238948,144.267125187858,1952.55852947071,1910.60681326914,"up","OS01G0655500","Probable plastid-lipid-associated protein 14, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G53450) UniProtKB/Swiss-Prot;Acc:Q9LV04]","Protein kinase, core domain containing protein. (Os01t0655500-01);Similar to protein kinase domain containing protein. (Os01t0655500-02)",1,26611799,26618704,"GO:0010468;GO:0007346;GO:0004693;GO:0006468;GO:0005634;GO:0005524;GO:0004672","regulation of gene expression;regulation of mitotic cell cycle;cyclin-dependent protein serine/threonine kinase activity;protein phosphorylation;nucleus;ATP binding;protein kinase activity","Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb];Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. This reaction requires the binding of a regulatory cyclin subunit and full activity requires stimulatory phosphorylation by a CDK-activating kinase (CAK). [GOC:pr, GOC:rn, PMID:7877684, PMID:9841670];The process of introducing a phosphate group on to a protein. [GOC:hb];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS07T0432800-01",4.9385574231020307E-5,0.0122972551968016,0.9308631755184851,"OS07G0432800",null,794.940608297624,792.023237947597,1528.87849442026,1496.53521533976,"up","OS07G0432800","Os07g0432800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KNC4]","Similar to Typical P-type R2R3 Myb protein (Fragment). (Os07t0432800-01)",7,14368433,14371039]
["OS10T0569400-01",4.88330941250417e-05,0.0122972551968016,1.62355704280861,"OS10G0569400",null,1501.58619589693,1242.83249804545,4204.6805478008,4251.80164070415,"up","OS10G0569400","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q7XBZ4]","RIR1a protein precursor. (Os10t0569400-01)",10,22575212,22576531]
["OS02T0543900-01",5.2091491409818206E-5,0.0125938116022876,3.22594526947738,"OS02G0543900",null,21.4043323079492,27.8993296669646,220.531740927678,240.7703973482,"up","OS02G0543900","Os02g0543900 protein [Source:UniProtKB/TrEMBL;Acc:Q0E0J8]","Similar to OSIGBa0159H11-OSIGBa0137A07.4 protein. (Os02t0543900-01)",2,20227026,20235116,"GO:0003676","nucleic acid binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS07T0622700-01",5.19645384239994e-05,0.0125938116022876,2.04364634698169,"OS07G0622700",null,88.6750909900754,93.6690539703515,349.302413895414,402.47742331074,"up","OS07G0622700","Hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:Q7XI46]","Alpha/beta hydrolase fold-1 domain containing protein. (Os07t0622700-01)",7,25753347,25760619,"GO:0016787;GO:0003824","hydrolase activity;catalytic activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0196000-01",5.6046216120242808E-5,0.0132738294178733,0.840953221212101,"OS02G0196000",null,926.501812758374,903.75197127438,1630.40316653418,1648.00828428451,"up","OS02G0196000","Os02g0196000 protein [Source:UniProtKB/TrEMBL;Acc:Q6H7N1]","Zinc/iron permease family protein. (Os02t0196000-01)",2,5357310,5361623,"GO:0016020;GO:0046873;GO:0030001;GO:0055085;GO:0016021;GO:0005385;GO:0071577","membrane;metal ion transmembrane transporter activity;metal ion transport;transmembrane transport;integral component of membrane;zinc ion transmembrane transporter activity;zinc II ion transmembrane transport","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah]"]
["OS08T0369000-01",5.769575428293051E-5,0.013455883090474002,1.34976303456178,"OS08G0369000",null,344.454713131732,356.508901493055,825.113214553632,961.434566201178,"up","OS08G0369000","Os08g0369000 protein [Source:UniProtKB/TrEMBL;Acc:Q0J648]","Similar to Permease 1. (Os08t0369000-01)",8,17193679,17195863,"GO:0055085;GO:0006810;GO:0005215;GO:0016020;GO:0016021","transmembrane transport;transport;transporter activity;membrane;integral component of membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0131900-01",5.8619677790655506E-5,0.013465777412482002,0.9357240151375541,"OS11G0131900",null,2009.62927986293,1912.85328639549,3573.06483020475,3930.05734497425,"up","OS11G0131900","Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2RAZ7]","Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II. (Os11t0131900-01);Similar to alpha-N-arabinofuranosidase A. (Os11t0131900-02)",11,1453786,1459945,"GO:0046373;GO:0046556;GO:0009505","L-arabinose metabolic process;alpha-L-arabinofuranosidase activity;plant-type cell wall","The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. [CHEBI:30849, GOC:jsg, GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. [EC:3.2.1.55, GOC:mf];A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208]"]
["OS12T0282000-01",5.8209872457027208E-5,0.013465777412482002,4.25948565924187,"OS12G0282000",null,329.219015974648,552.750351451415,8163.72429347187,8728.48489631422,"up","OS12G0282000","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q2QTV2]","Conserved hypothetical protein. (Os12t0282000-01)",12,10651961,10653342]
["OS03T0439800-02",6.0208491233783607E-5,0.0134871830627083,1.10393404014166,"OS03G0439800",null,618.494951439796,590.791134270975,1223.65264319486,1375.5869578669,"up","OS03G0439800","Os03g0439800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DQW9]","Protein of unknown function DUF1909 domain containing protein. (Os03t0439800-01);Similar to predicted protein. (Os03t0439800-02)",3,18579735,18598590]
["OS03T0667300-00",6.0486518033263309E-5,0.0134871830627083,4.07576626266638,"OS03G0667300","IRT2",13.4757491221742,16.5586819157832,211.0416451852,295.420872528255,"up","OS03G0667300","Fe(2+) transport protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6L8G1]","Similar to Metal transport protein. (Os03t0667300-00)",3,26276422,26277614,"GO:0055072;GO:0005886;GO:0071577;GO:0005385;GO:0046873;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0006826","iron ion homeostasis;plasma membrane;zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;metal ion transmembrane transporter activity;metal ion transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;iron ion transport","Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS04T0439300-01",6.0407976479594205E-5,0.0134871830627083,1.3024792556568099,"OS04G0439300",null,752.564278054569,683.694524968542,1883.57266924099,1658.99396775048,"up","OS04G0439300","Os04g0439300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WAP3]","Similar to H0525C06.6 protein. (Os04t0439300-01)",4,21856942,21858679]
["OS07T0585100-01",5.92839900879664e-05,0.0134871830627083,0.805030829494621,"OS07G0585100",null,4238.05779697395,4525.96516821578,7547.07869128779,7765.27436382784,"up","OS07G0585100","Os07g0585100 protein [Source:UniProtKB/TrEMBL;Acc:Q0D536]","Mo25-like domain containing protein. (Os07t0585100-01)",7,23753108,23760548]
["OS11T0427401-01",6.0920112027158606E-5,0.0134871830627083,2.93040950331114,"OS11G0427401",null,28.5609620095358,30.1060951252544,200.47711839764,246.757552269304,"up","OS11G0427401","Os11g0427401 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y1X5]","Conserved hypothetical protein. (Os11t0427401-01)",11,13626272,13631483,"GO:0015074;GO:0003676","DNA integration;nucleic acid binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS08T0412500-01",6.37986024226208e-05,0.0137987304745898,1.7669287103970701,"OS08G0412500",null,833.749706090594,887.282687059813,2623.67092448259,3233.49580378288,"up","OS08G0412500","Mitochondrial pyruvate carrier [Source:UniProtKB/TrEMBL;Acc:Q6Z565]","Uncharacterised protein family UPF0041 domain containing protein. (Os08t0412500-01)",8,19735721,19738994,"GO:0031305;GO:1902361;GO:0006850;GO:0050833;GO:0005743;GO:0005739;GO:0006810;GO:0016020;GO:0016021","integral component of mitochondrial inner membrane;mitochondrial pyruvate transmembrane transport;mitochondrial pyruvate transport;pyruvate transmembrane transporter activity;mitochondrial inner membrane;mitochondrion;transport;membrane;integral component of membrane","The component of the mitochondrial inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:mah];The directed movement of pyruvate across a mitochondrial membrane. [GOC:dph, GOC:TermGenie, GOC:vw, PMID:22628558];The directed movement of pyruvate, 2-oxopropanoate, into, out of or within a mitochondrion. [GOC:ai];Enables the transfer of pyruvate, 2-oxopropanoate, from one side of the membrane to the other. [GOC:ai];The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. [GOC:ai];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0562100-02",6.4133926662469107E-5,0.0137987304745898,1.8285714915113,"OS08G0562100",null,310.71885921794,366.286469213882,1108.49451658438,1296.12825216734,"up","OS08G0562100","Os08g0562100 protein [Source:UniProtKB/TrEMBL;Acc:Q6YYW3]","Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-01);Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-02)",8,28141176,28144882,"GO:0006108;GO:0005739;GO:0009507;GO:0016615;GO:0016616;GO:0005975;GO:0016491;GO:0055114;GO:0006099;GO:0003824;GO:0030060;GO:0046554;GO:0006107;GO:0006734;GO:0008746;GO:0051775;GO:0009570;GO:0009579;GO:0009941;GO:0048046","malate metabolic process;mitochondrion;chloroplast;malate dehydrogenase activity;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;carbohydrate metabolic process;oxidoreductase activity;oxidation-reduction process;tricarboxylic acid cycle;catalytic activity;L-malate dehydrogenase activity;malate dehydrogenase (NADP+) activity;oxaloacetate metabolic process;NADH metabolic process;NAD(P)+ transhydrogenase activity;response to redox state;chloroplast stroma;thylakoid;chloroplast envelope;apoplast","The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. [GOC:mah, ISBN:0582227089];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [EC:1.1.1.-, GOC:ai];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. [EC:1.1.1.37];Catalysis of the reaction: (S)-malate + NADP+ = oxaloacetate + NADPH + H+. [EC:1.1.1.82];The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle. [ISBN:0198506732];The chemical reactions and pathways involving reduced nicotinamide adenine dinucleotide (NADH), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. [GOC:jl, ISBN:0618254153];Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. [EC:1.6.1.1, EC:1.6.1.2];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. [GOC:mah, PMID:15131240, PMID:16987039];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb];The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. [GOC:jid]"]
["OS01T0952900-01",6.65696577860742e-05,0.0141506957514152,3.5412344713109603,"OS01G0952900",null,19.9715530307166,15.3326251364036,197.214400951826,213.787569224345,"up","OS01G0952900","Os01g0952900 protein [Source:UniProtKB/TrEMBL;Acc:Q0JFZ1]","Conserved hypothetical protein. (Os01t0952900-01)",1,41972004,41973019]
["OS06T0549600-01",6.6696130800071511E-5,0.0141506957514152,1.66996141392151,"OS06G0549600",null,179.388689819003,160.575521092031,498.5852891077,583.201509020659,"up","OS06G0549600","Os06g0549600 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z957]","FAD-linked oxidase, FAD-binding, subdomain 2 domain containing protein. (Os06t0549600-01)",6,20808194,20810005,"GO:0016614;GO:0050660;GO:0016491;GO:0055114;GO:0003824","oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidoreductase activity;oxidation-reduction process;catalytic activity","Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0795000-01",6.84806410280917E-5,0.0144291072047604,2.01330172942497,"OS01G0795000",null,1490.1195641736,1917.33435227248,7015.48661561675,6740.57783332971,"up","OS01G0795000","Os01g0795000 protein [Source:UniProtKB/TrEMBL;Acc:Q5ZBR8]","Subtilase. (Os01t0795000-01)",1,33668016,33672415,"GO:0008236;GO:0004252;GO:0006508;GO:0016787;GO:0008233","serine-type peptidase activity;serine-type endopeptidase activity;proteolysis;hydrolase activity;peptidase activity","Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS02T0159200-01",7.0260583142169408E-5,0.0146027301779562,1.34839415819012,"OS02G0159200",null,611.085056520025,715.495164549036,1745.79960838034,1632.0523004895,"up","OS02G0159200","Os02g0159200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETI1]","Protein of unknown function DUF292, eukaryotic domain containing protein. (Os02t0159200-01);Hypothetical conserved gene. (Os02t0159200-02)",2,3212392,3216619,"GO:0015031","protein transport","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS03T0598100-01",7.1384980371990708E-5,0.014670831612695799,1.10173972976341,"OS03G0598100",null,431.144407917263,466.286609324937,923.017317595257,1002.98932988062,"up","OS03G0598100","ACT domain containing protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q84TZ0]","Similar to ACR4. (Os03t0598100-01)",3,22281686,22284615]
["OS03T0755100-01",7.241141104356741E-5,0.014670831612695799,0.7875841564537871,"OS03G0755100","OSABCB25",1986.03226294015,1859.99978598269,3242.26793680017,3396.68139419819,"up","OS03G0755100","ABC transporter B family member 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNU2]","Half-size ABC transporter, Internal detoxification of aluminum (Os03t0755100-01)",3,31149940,31155280,"GO:0005774;GO:0005773;GO:0042626;GO:0006810;GO:0016887;GO:0055085;GO:0016021;GO:0005524;GO:0000166;GO:0016020","vacuolar membrane;vacuole;ATPase activity, coupled to transmembrane movement of substances;transport;ATPase activity;transmembrane transport;integral component of membrane;ATP binding;nucleotide binding;membrane","The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS05T0534800-01",7.3469404187694908E-5,0.014670831612695799,0.817842504545875,"OS05G0534800",null,1104.87124865795,1068.44481342005,1859.69385721972,1971.3578646628,"up","OS05G0534800","Os05g0534800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KL54]","Hypothetical conserved gene. (Os05t0534800-01)",5,26554982,26560012]
["OS11T0262600-00",7.33777489895644e-05,0.014670831612695799,3.81526548791057,"OS11G0262600",null,358.954484431161,586.142978087222,6433.7970980919,6870.31668187319,"up","OS11G0262600","Os11g0262600 protein [Source:UniProtKB/TrEMBL;Acc:Q9FRT1]","Conserved hypothetical protein. (Os11t0262600-00)",11,8864479,8866289]
["OS03T0599000-01",7.4670856595881007E-5,0.0148139221475153,1.00981036901331,"OS03G0599000",null,509.626959713077,475.550581695631,1019.61179475058,964.187419436165,"up","OS03G0599000","Os03g0599000 protein [Source:UniProtKB/TrEMBL;Acc:C7J081]","NB-ARC domain containing protein. (Os03t0599000-01)",3,22347751,22351524,"GO:0005886;GO:0007165;GO:0006952;GO:0043531;GO:0055114;GO:0015035","plasma membrane;signal transduction;defense response;ADP binding;oxidation-reduction process;protein disulfide oxidoreductase activity","The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. [GOC:jl];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. [MetaCyc:DISULFOXRED-RXN]"]
["OS02T0466600-01",7.5824168566116711E-5,0.0149456774066581,1.43924853965856,"OS02G0466600",null,474.972326452588,404.526793520309,1248.90248543612,1136.11952259803,"up","OS02G0466600","Os02g0466600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VIT2]","Conserved hypothetical protein. (Os02t0466600-01)",2,15705569,15709140]
["OS07T0516700-01",7.8362543204758307E-5,0.015227357043134899,1.79345179196262,"OS07G0516700",null,159.00361143048,156.458200038389,483.949713106496,609.57745666481,"up","OS07G0516700","Os07g0516700 protein [Source:UniProtKB/TrEMBL;Acc:Q7EZ60]","Conserved hypothetical protein. (Os07t0516700-01)",7,19916969,19917631]
["OS12T0582800-01",7.9165748005437909E-5,0.015227357043134899,0.807234623117829,"OS12G0582800",null,834.76896001002,811.112247567439,1456.72766465322,1423.32428583434,"up","OS12G0582800","Early-responsive to dehydration protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QN15]","Protein of unknown function DUF221 domain containing protein. (Os12t0582800-01)",12,24191443,24197634,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0689600-01",8.0873651431663708E-5,0.015346905580995001,1.1338979121515,"OS07G0689600","NAS3",435.221423594968,382.91085798869,905.454301941185,889.944011252631,"up","OS07G0689600","Nicotianamine synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0D3F2]","Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 3) (OsNAS3). (Os07t0689600-01)",7,29323098,29324607,"GO:0030418;GO:0030410;GO:0016740","nicotianamine biosynthetic process;nicotianamine synthase activity;transferase activity","The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid. [GOC:mah, PMID:10069850];Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H(+) + nicotianamine. [EC:2.5.1.43, RHEA:16484];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0788800-02",8.566865166565901E-5,0.0158046708751517,2.67875258424202,"OS02G0788800",null,483.223117172412,665.791593175583,3384.50103184339,3972.66348545943,"up","OS02G0788800","Amino acid transporter-like [Source:UniProtKB/TrEMBL;Acc:Q6K4N6]","Amino acid transporter, transmembrane domain containing protein. (Os02t0788800-01);Similar to amino acid transporter family protein. (Os02t0788800-02)",2,33511971,33517881,"GO:0003333;GO:0015171;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0269800-01",8.54560984967856e-05,0.0158046708751517,1.00295689442667,"OS04G0269800",null,441.918844696017,424.672963658083,845.325906057576,891.413622512379,"up","OS04G0269800","Os04g0269800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W874]","Conserved hypothetical protein. (Os04t0269800-01)",4,11255676,11258882]
["OS04T0524500-01",8.58724589314997e-05,0.0158046708751517,1.95052362239701,"OS04G0524500",null,193.466748197564,167.258204560985,622.741345373681,771.513950599075,"up","OS04G0524500","Os04g0524500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCZ5]","Oligopeptide transporter OPT superfamily protein. (Os04t0524500-01)",4,26236705,26240648,"GO:0022857;GO:0005886;GO:0006810;GO:0055085;GO:0016020;GO:0016021","transmembrane transporter activity;plasma membrane;transport;transmembrane transport;membrane;integral component of membrane","Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0401100-01",8.71441554469824e-05,0.0158477871262869,0.827688090465141,"OS03G0401100",null,8292.64988845119,8632.99291922349,14484.3417158587,15555.94778835,"up","OS03G0401100","Os03g0401100 protein [Source:UniProtKB/TrEMBL;Acc:Q10K10]","Similar to Protein kinase domain containing protein, expressed. (Os03t0401100-01)",3,16282782,16290478,"GO:0004871;GO:0004672;GO:0006468;GO:0035556;GO:0005737;GO:0016310;GO:0016301;GO:0005524","signal transducer activity;protein kinase activity;protein phosphorylation;intracellular signal transduction;cytoplasm;phosphorylation;kinase activity;ATP binding","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0850400-01",8.7814257834504611E-5,0.0158751550613005,1.20795898339339,"OS03G0850400",null,1219.71976311399,1391.13397415968,2873.45554505414,3157.89305292601,"up","OS03G0850400","Aspartokinase [Source:UniProtKB/TrEMBL;Acc:Q0DLR8]","Similar to Aspartokinase. (Os03t0850400-01)",3,35790044,35795425,"GO:0004072;GO:0009570;GO:0009089;GO:0008652;GO:0016310;GO:0016301;GO:0009088;GO:0016740","aspartate kinase activity;chloroplast stroma;lysine biosynthetic process via diaminopimelate;cellular amino acid biosynthetic process;phosphorylation;kinase activity;threonine biosynthetic process;transferase activity","Catalysis of the reaction: L-aspartate + ATP = 4-phospho-L-aspartate + ADP + H(+). [EC:2.7.2.4, RHEA:23779];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS11T0134950-00",9.0487696669502011E-5,0.0161671351382844,4.53660892447033,"OS11G0134950",null,8.91546599941075,10.9849949837513,217.202953569455,244.665714187282,"up","OS11G0134950","Os11g0134950 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XZH2]","Hypothetical protein. (Os11t0134950-00)",11,1618885,1623931]
["OS10T0359500-01",9.4473389296079207E-5,0.0167811104056617,0.74624499499146,"OS10G0359500",null,1402.49339313039,1354.59862664816,2236.31601298405,2388.48859222029,"up","OS10G0359500","No apical meristem protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q339F9]","No apical meristem (NAM) protein domain containing protein. (Os10t0359500-01)",10,11035676,11040596,"GO:0005764;GO:0051603;GO:0004197;GO:0005615;GO:0003677;GO:0006508;GO:0008234;GO:0005634;GO:0006355;GO:0006351","lysosome;proteolysis involved in cellular protein catabolic process;cysteine-type endopeptidase activity;extracellular space;DNA binding;proteolysis;cysteine-type peptidase activity;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions. [GOC:mah, ISBN:0198506732];The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE];That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS06T0641500-00",9.5475268726243613E-5,0.0168518875341823,2.09894727323709,"OS06G0641500",null,60.3981162721031,57.3480600929598,267.877357900295,236.543343293807,"up","OS06G0641500","Os06g0641500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WZJ2]","Similar to Cytochrome P450 CYP71Y10. (Os06t0641500-00)",6,26092456,26094621,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0231800-01",9.5975007559168611E-5,0.0168518875341823,"Inf","OS07G0231800",null,0,0,85.440684606187,104.78661812709,"up","OS07G0231800","Os07g0231800 protein [Source:UniProtKB/TrEMBL;Acc:Q84YL5]","Conserved hypothetical protein. (Os07t0231800-01);Conserved hypothetical protein. (Os07t0231800-02)",7,7321536,7323788]
["OS02T0219200-01",9.96674973524516e-05,0.0170930490532417,1.712559701495,"OS02G0219200",null,162.35424999987,142.221337078456,461.524870307265,536.696652482126,"up","OS02G0219200","Os02g0219200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VGJ1]","Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid beta- galactosidase) (Exo-(1-->4)-beta-D-galactanase). (Os02t0219200-01);Similar to Beta-galactosidase. (Os02t0219200-02);Similar to Beta-galactosidase. (Os02t0219200-03)",2,6655868,6659388,"GO:0004553;GO:0005975;GO:0008152;GO:0016798;GO:0016787","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS03T0237100-01",9.98235978584121e-05,0.0170930490532417,3.2413190077295,"OS03G0237100",null,1457.82345000531,1019.85543677381,10134.4533842491,13295.923095562,"up","OS03G0237100","NADH-dependent oxidoreductase 1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10PE7]","Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247). (Os03t0237100-01)",3,7229093,7231670,"GO:0016491;GO:0055114;GO:0016021;GO:0016020","oxidoreductase activity;oxidation-reduction process;integral component of membrane;membrane","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0700601-00",1.00145842515392E-4,0.0170930490532417,1.23600643764135,"OS06G0700601",null,226.274370112606,213.071364525964,528.832146176856,506.027439987775,"up","OS06G0700601","Os06g0700601 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0L2]","Hypothetical gene. (Os06t0700601-00)",6,29475710,29477531]
["OS03T0667500-01",1.02027311139043E-4,0.017160849224652,1.9819219450385401,"OS03G0667500","IRT1",2041.05579268845,1599.72429101944,6724.76089844443,7657.01116321383,"up","OS03G0667500","Fe(2+) transport protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q75HB1]","Similar to Metal transport protein. (Os03t0667500-01)",3,26286254,26292018,"GO:0055072;GO:0071577;GO:0005385;GO:0046873;GO:0005886;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0006829;GO:0006826;GO:0015691","iron ion homeostasis;zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;metal ion transmembrane transporter activity;plasma membrane;metal ion transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;zinc II ion transport;iron ion transport;cadmium ion transport","Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of cadmium (Cd) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS04T0223901-00",1.02228153930566E-4,0.017160849224652,2.90919190266088,"OS04G0223901",null,63.0802399553193,43.0659414331667,369.602072036212,427.76519047095,"up","OS04G0223901","OSJNBb0072N21.5 protein [Source:UniProtKB/TrEMBL;Acc:Q7XWZ4]","Dimethylaniline monooxygenase, N-oxide-forming domain containing protein. (Os04t0223901-00)",4,8263115,8268571,"GO:0004497;GO:0055114;GO:0004499;GO:0050661;GO:0050660;GO:0016491","monooxygenase activity;oxidation-reduction process;N,N-dimethylaniline monooxygenase activity;NADP binding;flavin adenine dinucleotide binding;oxidoreductase activity","Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O. [EC:1.14.13.8];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS10T0471300-01",1.0188547054367201E-4,0.017160849224652,0.8464706946746391,"OS10G0471300","CYN",943.829129388619,999.479685771553,1668.45566413731,1825.80170914508,"up","OS10G0471300","Cyanate hydratase [Source:UniProtKB/Swiss-Prot;Acc:Q9FWK4]","Similar to Cyanate lyase (CYN). (Os10t0471300-01)",10,17471631,17474798,"GO:0003677;GO:0016829;GO:0008824;GO:0009439;GO:0042802;GO:0009440;GO:0009651;GO:0005829","DNA binding;lyase activity;cyanate hydratase activity;cyanate metabolic process;identical protein binding;cyanate catabolic process;response to salt stress;cytosol","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of the reaction: cyanate + H2O = carbamate. [EC:4.2.1.104];The chemical reactions and pathways involving cyanate, NCO-, the anion of cyanic acid. [ISBN:0198506732];Interacting selectively and non-covalently with an identical protein or proteins. [GOC:jl];The chemical reactions and pathways resulting in the breakdown of cyanate, NCO-, the anion of cyanic acid. [ISBN:0198506732];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0508000-02",1.0340805513303701E-4,0.0171702331544812,0.9659236064834351,"OS01G0508000","BGLU1",610.255248267271,658.01118169831,1185.05419142994,1292.26790434734,"up","OS01G0508000","Beta-glucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5QMT0]","Similar to Beta-glucosidase. (Os01t0508000-01);Similar to Beta-mannosidase 2. (Os01t0508000-02)",1,17756115,17764819,"GO:0004553;GO:0005975;GO:1901657;GO:0102483;GO:0008422;GO:0004565;GO:0008152;GO:0016798;GO:0016787;GO:0004567;GO:0033907;GO:0047701;GO:0080079;GO:0004338","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;beta-galactosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity;beta-mannosidase activity;beta-D-fucosidase activity;beta-L-arabinosidase activity;cellobiose glucosidase activity;glucan exo-1,3-beta-glucosidase activity","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides. [EC:3.2.1.23];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides. [EC:3.2.1.25];Catalysis of the hydrolysis of terminal non-reducing beta-D-fucose residues in beta-D-fucosides. [EC:3.2.1.38];Catalysis of the reaction: H2O + a beta-L-arabinoside = L-arabinose + an alcohol. [EC:3.2.1.88, MetaCyc:BETA-L-ARABINOSIDASE-RXN];Catalysis of the reaction: cellobiose + H2O = 2 D-glucose. [PMID:15604686];Catalysis of the successive hydrolysis of beta-D-glucose units from the non-reducing ends of (1->3)-beta-D-glucans, releasing alpha-glucose. [EC:3.2.1.58]"]
["OS12T0236225-00",1.10509356875609E-4,0.0176768684359351,3.89308554433629,"OS12G0236225",null,174.817076924372,305.738541048134,3537.22407202178,3602.46309799126,"up","OS12G0236225","Os12g0236225 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8I6]","Conserved hypothetical protein. (Os12t0236225-00)",12,7455334,7457843]
["OS03T0293700-00",0.000112981428271017,0.017772968727073003,6.31074949023623,"OS03G0293700",null,3.05776175827846,2.05866052682091,190.262488015659,215.89201590212,"up","OS03G0293700","Os03g0293700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VWB6]","Hypothetical conserved gene. (Os03t0293700-00)",3,10230815,10231357]
["OS06T0149900-01",1.1325574434215501E-4,0.017772968727073003,1.50436761617985,"OS06G0149900",null,1871.35019606642,1769.41872280257,4635.57477211484,5693.29714333736,"up","OS06G0149900","Os06g0149900 protein [Source:UniProtKB/TrEMBL;Acc:Q5VND2]","Similar to Cysteine synthase (EC 4.2.99.8). (Os06t0149900-01)",6,2579089,2581720,"GO:0030170;GO:0006535;GO:0004124;GO:0005737","pyridoxal phosphate binding;cysteine biosynthetic process from serine;cysteine synthase activity;cytoplasm","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators];Catalysis of the reaction: O3-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate. [EC:4.2.99.8];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS05T0150300-01",1.1465768782978401E-4,0.0178725595845692,0.7813654842854191,"OS05G0150300",null,2009.05740515572,1855.90967355054,3447.61197934002,3195.32675879883,"up","OS05G0150300","Os05g0150300 protein [Source:UniProtKB/TrEMBL;Acc:Q5WN07]","Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os05t0150300-01)",5,2874325,2884462,"GO:0016818;GO:0006338;GO:0043044;GO:0005634;GO:0003676;GO:0003677;GO:0005524;GO:0031491","hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;chromatin remodeling;ATP-dependent chromatin remodeling;nucleus;nucleic acid binding;DNA binding;ATP binding;nucleosome binding","Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. [GOC:jid, GOC:vw, PMID:12697820];Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors. [GOC:jl, PMID:12042764];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. [GOC:mah]"]
["OS01T0636500-01",1.2805093689693102E-4,0.0179635950816301,1.9329003566193101,"OS01G0636500",null,325.470460941256,429.381366590201,1490.13641800157,1392.05417783617,"up","OS01G0636500","Os01g0636500 protein [Source:UniProtKB/TrEMBL;Acc:Q5VNP4]","Similar to Polygalacturonase PG2. (Os01t0636500-01)",1,25513947,25518078,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS01T0647200-01",1.2616603497089902E-4,0.0179635950816301,4.00722155239917,"OS01G0647200",null,97.8297931831407,177.464999288838,2192.30689209401,2234.51330599503,"up","OS01G0647200","Os01g0647200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5W5]","Hypothetical conserved gene. (Os01t0647200-01);Non-protein coding transcript. (Os01t0647200-04)",1,26086062,26088337]
["OS02T0143200-01",0.000127748929947744,0.0179635950816301,1.18775789967336,"OS02G0143200",null,244.620940662277,274.831180330592,563.957528579747,619.346326162643,"up","OS02G0143200","Cyclin-like protein [Source:UniProtKB/TrEMBL;Acc:Q6YXW5]","Armadillo-type fold domain containing protein. (Os02t0143200-01)",2,2397461,2404964]
["OS02T0735800-01",1.28064059528605E-4,0.0179635950816301,1.89592183985912,"OS02G0735800",null,53.00120381016,54.5545039607542,201.970948816622,198.30805080602,"up","OS02G0735800","Os02g0735800 protein [Source:UniProtKB/TrEMBL;Acc:Q0DXS6]","Pentatricopeptide repeat domain containing protein. (Os02t0735800-01)",2,30699061,30701126,"GO:0009451;GO:0004519;GO:0043231;GO:0003723;GO:0090305;GO:0008270","RNA modification;endonuclease activity;intracellular membrane-bounded organelle;RNA binding;nucleic acid phosphodiester bond hydrolysis;zinc ion binding","The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. [GOC:go_curators, ISBN:1555811337];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS03T0376100-01",0.000124905289261304,0.0179635950816301,0.8013651744327931,"OS03G0376100",null,2197.93052369181,2444.11918988308,4110.85308591959,3979.0765111445,"up","OS03G0376100","Os03g0376100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VYR6]","Similar to Cystathionine gamma-synthase (Fragment). (Os03t0376100-01);Similar to Cystathionine gamma-synthase (Fragment). (Os03t0376100-02)",3,14850286,14852220,"GO:0030170;GO:0003824;GO:0016829","pyridoxal phosphate binding;catalytic activity;lyase activity","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684]"]
["OS03T0823400-01",1.2247508280039302E-4,0.0179635950816301,1.11374914647305,"OS03G0823400",null,279.275573922766,273.801850067181,630.305473118541,566.594430874342,"up","OS03G0823400","Bowman-Birk serine protease inhibitor family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q84LH6]","Similar to Bowman-Birk type trypsin inhibitor (WTI). (Os03t0823400-01)",3,34567109,34568087,"GO:0004867;GO:0010951;GO:0010466;GO:0030414;GO:0006508;GO:0008233;GO:0005576","serine-type endopeptidase inhibitor activity;negative regulation of endopeptidase activity;negative regulation of peptidase activity;peptidase inhibitor activity;proteolysis;peptidase activity;extracellular region","Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. [GOC:ai];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb];Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. [GOC:jl];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]"]
["OS04T0664900-01",1.28177000778848E-4,0.0179635950816301,2.51320800111755,"OS04G0664900",null,174.292420221872,144.106236877464,767.546586830785,1050.1534710171,"up","OS04G0664900","Os04g0664900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KJV8]","Similar to H1005F08.5 protein. (Os04t0664900-01)",4,33943991,33946513,"GO:0004553;GO:0005975","hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process","Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732]"]
["OS06T0528600-01",0.000120073957073248,0.0179635950816301,0.6300731788680181,"OS06G0528600",null,2715.29244135127,2619.64552037961,4087.22852460304,4169.35350167533,"up","OS06G0528600","Aminopropyl transferase [Source:UniProtKB/TrEMBL;Acc:Q7XAP2]","Aminopropyl transferase. (Os06t0528600-01)",6,19614314,19619657,"GO:0006596;GO:0003824;GO:0016740;GO:0004766;GO:0006595","polyamine biosynthetic process;catalytic activity;transferase activity;spermidine synthase activity;polyamine metabolic process","The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: S-adenosylmethioninamine + putrescine = 5'-methylthioadenosine + spermidine. [EC:2.5.1.16];The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732]"]
["OS06T0675600-01",1.22500224000019E-4,0.0179635950816301,0.8924635751672461,"OS06G0675600",null,619.706383011102,560.984993558699,1108.40095582455,1083.36762730973,"up","OS06G0675600","Os06g0675600 protein [Source:UniProtKB/TrEMBL;Acc:Q653V8]","Similar to GRAB2 protein. (Os06t0675600-01)",6,28037569,28041881,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0537600-01",1.2757826206786802E-4,0.0179635950816301,0.9015818095270761,"OS08G0537600",null,574.859210556351,641.272754104714,1157.1862091619,1114.68585740352,"up","OS08G0537600","Os08g0537600 protein [Source:UniProtKB/TrEMBL;Acc:Q0J435]","Arf GTPase activating protein family protein. (Os08t0537600-01)",8,26871277,26879986,"GO:0005096;GO:0043547;GO:0046872;GO:0005737","GTPase activator activity;positive regulation of GTPase activity;metal ion binding;cytoplasm","Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. [GOC:mah];Any process that activates or increases the activity of a GTPase. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any metal ion. [GOC:ai];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684]"]
["OS09T0133200-01",1.25173364010732E-4,0.0179635950816301,1.8366046069250501,"OS09G0133200",null,329.181265829484,280.492496779349,1112.75549140022,1064.80677526385,"up","OS09G0133200","Short-chain dehydrogenase/reductase SDRA [Source:Projected from Arabidopsis thaliana (AT4G05530) UniProtKB/Swiss-Prot;Acc:Q9S9W2]","Similar to Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH- dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2. (Os09t0133200-01);Similar to Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH- dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2. (Os09t0133200-02)",9,2512448,2517177,"GO:0055114;GO:0016491;GO:0048767;GO:0080024;GO:0080026;GO:0005777","oxidation-reduction process;oxidoreductase activity;root hair elongation;indolebutyric acid metabolic process;response to indolebutyric acid;peroxisome","A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The process in which the root hair grows longer. [GOC:jid, PMID:12468740];The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. [PMID:18725356];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [PMID:18725356];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576]"]
["OS09T0426000-01",0.00011940277158557,0.0179635950816301,0.684723223227633,"OS09G0426000",null,1596.06918111352,1511.92771948624,2462.35997287691,2533.41428622811,"up","OS09G0426000","WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:Q69PB8]","Protein of unknown function DUF6, transmembrane domain containing protein. (Os09t0426000-01)",9,15447741,15449982,"GO:0006810;GO:0022857;GO:0005886;GO:0055085;GO:0016021;GO:0016020","transport;transmembrane transporter activity;plasma membrane;transmembrane transport;integral component of membrane;membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the transfer of a substance from one side of a membrane to the other. [GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0646700-01",0.000132515236297372,0.018119453382360498,0.818209838759487,"OS01G0646700",null,1262.11731408047,1370.52422787311,2415.86252683779,2226.05515124726,"up","OS01G0646700","Os01g0646700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5T8]","Similar to OSIGBa0105P02.4 protein. (Os01t0646700-01);Similar to OSIGBa0105P02.4 protein. (Os01t0646700-02);Hypothetical conserved gene. (Os01t0646700-03)",1,26060892,26064410,"GO:0000723;GO:0003678;GO:0032508;GO:0004386;GO:0006281","telomere maintenance;DNA helicase activity;DNA duplex unwinding;helicase activity;DNA repair","Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS03T0156700-01",1.33058059905831E-4,0.018119453382360498,0.810056877845533,"OS03G0156700",null,782.787010119286,848.168137050216,1469.41183052093,1390.11012954171,"up","OS03G0156700","High-affinity nickel-transport family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q8LMQ1]","Nickel/cobalt transporter, high-affinity domain containing protein. (Os03t0156700-01)",3,3048617,3051742,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0204900-01",1.3187739626763402E-4,0.018119453382360498,2.23152416789278,"OS03G0204900",null,43.8279185353246,39.1145500095973,210.752294417345,178.770311810353,"up","OS03G0204900","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10Q93]","Conserved hypothetical protein. (Os03t0204900-01)",3,5481504,5482358]
["OS08T0390700-01",1.33652852673667E-4,0.018119453382360498,2.84586833492755,"OS08G0390700",null,20.174443067001,28.8212473754928,185.247035105094,167.001839778735,"up","OS08G0390700","Os08g0390700 protein [Source:UniProtKB/TrEMBL;Acc:Q0J5X6]","Similar to 2-oxoglutarate-dependent oxygenase. (Os08t0390700-01)",8,18508782,18509318,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS09T0129600-01",1.3403366275247002E-4,0.018119453382360498,1.19204196524402,"OS09G0129600",null,267.044526889652,241.892611901457,556.151888045771,606.64679581546,"up","OS09G0129600","Os09g0129600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XKA3]","Conserved hypothetical protein. (Os09t0129600-01)",9,2297916,2298519,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0139100-01",0.000134893054111035,0.0181552977497812,2.29383446400177,"OS05G0139100","APG",48.9241881324554,38.0852197461869,200.019538683128,226.637772349737,"up","OS05G0139100","Transcription factor APG [Source:UniProtKB/Swiss-Prot;Acc:Q6AT90]","Helix-loop-helix DNA-binding domain containing protein. (Os05t0139100-01)",5,2246835,2248876,"GO:0080113;GO:0009742;GO:0040008;GO:0005515;GO:0046983;GO:0005634;GO:0006355;GO:0006351","regulation of seed growth;brassinosteroid mediated signaling pathway;regulation of growth;protein binding;protein dimerization activity;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any process that modulates the frequency, rate or extent of growth of the seed of an plant. [PMID:19141706];A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm];Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS03T0209500-01",1.3769969474234202E-4,0.0183711837282446,0.795387475321994,"OS03G0209500",null,688.57574348031,686.445586552434,1150.36698304267,1236.04226547569,"up","OS03G0209500","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:Q10Q54]","Zinc finger, DHHC-type domain containing protein. (Os03t0209500-01)",3,5710240,5715009,"GO:0019706;GO:0016746;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;transferase activity, transferring acyl groups;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0484200-01",1.39047677566321E-4,0.018390409718641698,"Inf","OS02G0484200",null,0,0,60.4937141383119,109.207540610894,"up","OS02G0484200","Os02g0484200 protein [Source:UniProtKB/TrEMBL;Acc:Q6K6U4]","Transferase family protein. (Os02t0484200-01)",2,16702161,16703949,"GO:0016747;GO:0016740","transferase activity, transferring acyl groups other than amino-acyl groups;transferase activity","Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0737300-01",1.41899337101342E-4,0.0186064744511597,2.35145175079723,"OS03G0737300",null,160.022865349906,223.364667160069,917.162762742149,1039.40771456948,"up","OS03G0737300","Magnesium-dependent phosphatase-1 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q84R48]","HAD-superfamily phosphatase, subfamily IIIC domain containing protein. (Os03t0737300-01)",3,30224194,30226344,"GO:0016791;GO:0016311","phosphatase activity;dephosphorylation","Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS02T0204400-00",1.4655846099347002E-4,0.0188529101855794,1.3175221593008701,"OS02G0204400","UVR3",210.985561321214,212.042034262554,572.73887418047,481.605266243191,"up","OS02G0204400","(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:Q0E2Y1]","Similar to (6-4)DNA photolyase. (Os02t0204400-00)",2,5835504,5838694,"GO:0003914;GO:0006974;GO:0006281;GO:0003677;GO:0000166;GO:0016829;GO:0009411","DNA (6-4) photolyase activity;cellular response to DNA damage stimulus;DNA repair;DNA binding;nucleotide binding;lyase activity;response to UV","Catalysis of the reaction: pyrimidine-pyrimidone (6-4) photoproduct (in DNA) = 2 pyrimidine residues (in DNA). Catalyzes the reactivation of ultraviolet-irradiated DNA. [GOC:mah, PMID:11124949];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:hb]"]
["OS03T0797400-01",0.000146864120979573,0.0188529101855794,3.97099685741179,"OS03G0797400",null,7.1347774359830805,12.3519631609255,151.23428534578,154.348138065769,"up","OS03G0797400","Indole-3-glycerol phosphate lyase, chloroplast, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q7Y1I9]","Similar to Indole-3-glycerol phosphate lyase. (Os03t0797400-01)",3,33214544,33217418,"GO:0006568;GO:0004834;GO:0016829;GO:0008152;GO:0003824;GO:0000162","tryptophan metabolic process;tryptophan synthase activity;lyase activity;metabolic process;catalytic activity;tryptophan biosynthetic process","The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:0198547684];Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. [RHEA:10535];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:0471331309, MetaCyc:TRPSYN-PWY]"]
["OS07T0495150-00",1.4618148617972802E-4,0.0188529101855794,4.42280600450396,"OS07G0495150",null,10.1925391942615,5.14665131705228,171.724091747466,157.278798915119,"up","OS07G0495150","Os07g0495150 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X671]","Similar to Ser/thr protein kinase. (Os07t0495150-00)",7,18528508,18531797,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS10T0118000-01",1.45143418886883E-4,0.0188529101855794,2.33410042400393,"OS10G0118000",null,33.2765262045342,34.6467398844504,171.174142377109,171.319726407307,"up","OS10G0118000",null,"Similar to 5-pentadecatrienyl resorcinol O-methyltransferase. (Os10t0118000-01)",10,1139929,1141433]
["OS04T0142400-01",1.4925812322835201E-4,0.0189217185928324,1.7118992172215202,"OS04G0142400",null,112.117931136877,103.962356604456,315.15273655927,392.708553812906,"up","OS04G0142400","OSJNBb0049I21.1 protein [Source:UniProtKB/TrEMBL;Acc:Q7XRV9]","Conserved hypothetical protein. (Os04t0142400-01)",4,2889775,2891435]
["OS02T0503900-01",0.000149888651358475,0.0189231325467112,2.61249510033498,"OS02G0503900",null,47.9049342130293,71.0237881753215,379.54927096457,347.771754122872,"up","OS02G0503900","Os02g0503900 protein [Source:UniProtKB/TrEMBL;Acc:Q6K661]","Cytochrome P450 family protein. (Os02t0503900-01)",2,17873662,17875911,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037;GO:0016021","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;integral component of membrane","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0306400-01",1.5374084602623502E-4,0.0193295898263108,2.66677076595253,"OS04G0306400",null,1033.52347429812,820.376219938133,4909.74789587074,6862.63082222803,"up","OS04G0306400","OSJNBa0023J03.8 protein [Source:UniProtKB/TrEMBL;Acc:Q7XVP0]","Ribose 5-phosphate isomerase family protein. (Os04t0306400-01)",4,13802278,13803456,"GO:0009052;GO:0004751;GO:0016853","pentose-phosphate shunt, non-oxidative branch;ribose-5-phosphate isomerase activity;isomerase activity","The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P. [ISBN:0198506732, MetaCyc:NONOXIPENT-PWY];Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate. [EC:5.3.1.6, RHEA:14660];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732]"]
["OS06T0689600-01",1.55833332736407E-4,0.0195123769744373,0.9482506752069971,"OS06G0689600",null,431.611177443751,389.086839569152,782.515463531067,801.047298822346,"up","OS06G0689600","Os06g0689600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X0E5]","Hypothetical conserved gene. (Os06t0689600-01)",6,28752549,28757404,"GO:0006468;GO:0004674;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672;GO:0016020;GO:0016021","protein phosphorylation;protein serine/threonine kinase activity;plasma membrane;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity;membrane;integral component of membrane","The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0117900-01",1.59337667177163E-4,0.0197889610064906,1.41600273879595,"OS11G0117900",null,176.097549403214,204.586835734342,469.351254675742,546.486527747513,"up","OS11G0117900","Os11g0117900 protein [Source:UniProtKB/TrEMBL;Acc:B9G928]","Similar to Hydrolase, alpha/beta fold family protein, expressed. (Os11t0117900-01)",11,812243,813507,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS10T0370500-01",1.60988910202538E-4,0.0199130898158216,1.5247751170163601,"OS10G0370500",null,852.441401457324,870.621301060836,2190.71236240468,2767.26030965755,"up","OS10G0370500","Cellulase containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q8RU06]","Glycoside hydrolase, catalytic core domain containing protein. (Os10t0370500-01)",10,11666794,11673481,"GO:0005737;GO:0007015;GO:0051015;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787;GO:0051017;GO:0007163;GO:0016477;GO:0031941","cytoplasm;actin filament organization;actin filament binding;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity;actin filament bundle assembly;establishment or maintenance of cell polarity;cell migration;filamentous actin","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah];Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. [GOC:ai];Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns. [GOC:mah];The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms. [GOC:cjm, GOC:dph, GOC:ems, GOC:pf, http://en.wikipedia.org/wiki/Cell_migration];A two-stranded helical polymer of the protein actin. [GOC:mah]"]
["OS12T0133100-02",0.00016461561512894,0.0201981376442545,1.12925954625892,"OS12G0133100",null,379.579962262963,398.511092376824,779.642853891962,922.403637925933,"up","OS12G0133100","Os12g0133100 protein [Source:UniProtKB/TrEMBL;Acc:H2KWZ0]","Major facilitator superfamily protein. (Os12t0133100-01);Similar to cDNA clone:J023128K07, full insert sequence. (Os12t0133100-02)",12,1606119,1620843,"GO:0055085;GO:0005215;GO:0016021;GO:0016020","transmembrane transport;transporter activity;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0180700-01",0.000165385508633871,0.0202114322391281,0.849803221475614,"OS02G0180700",null,440.317693192099,472.462590905399,818.616551000705,826.446359516713,"up","OS02G0180700","Os02g0180700 protein [Source:UniProtKB/TrEMBL;Acc:Q6H817]","Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44). (Os02t0180700-01)",2,4497115,4500124,"GO:0050662;GO:0003824","coenzyme binding;catalytic activity","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0158400-01",1.67428501536612E-4,0.0202987126148673,0.6292117888568981,"OS02G0158400",null,1557.41998888316,1598.54989907644,2504.63490633946,2376.76594882289,"up","OS02G0158400","Single-stranded DNA-binding protein WHY2, mitochondrial [Source:Projected from Arabidopsis thaliana (AT1G71260) UniProtKB/Swiss-Prot;Acc:Q8VYF7]","ssDNA-binding transcriptional regulator family protein. (Os02t0158400-01)",2,3182926,3187016,"GO:0003697;GO:0006952;GO:0006355;GO:0003677;GO:0003729;GO:0006281;GO:0005739","single-stranded DNA binding;defense response;regulation of transcription, DNA-templated;DNA binding;mRNA binding;DNA repair;mitochondrion","Interacting selectively and non-covalently with single-stranded DNA. [GOC:elh, GOC:vw, PMID:22976174];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. [GOC:kmv, GOC:pr, SO:0000234];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732]"]
["OS10T0105700-01",1.6965323599856002E-4,0.0203625145814099,1.06395893895458,"OS10G0105700",null,3190.26476780386,2697.87462039881,6163.52890664059,6146.57268803683,"up","OS10G0105700","Os10g0105700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KRC0]","Similar to predicted protein. (Os10t0105700-01)",10,427319,430563,"GO:0016831;GO:0030170;GO:0019752;GO:0016829;GO:0003824","carboxy-lyase activity;pyridoxal phosphate binding;carboxylic acid metabolic process;lyase activity;catalytic activity","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). [ISBN:0198506732];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0936800-01",1.7226477850023201E-4,0.0204787296215529,0.8209956429279921,"OS01G0936800",null,798.360823561134,848.987698586959,1442.08284026276,1468.16385980899,"up","OS01G0936800","Os01g0936800 protein [Source:UniProtKB/TrEMBL;Acc:Q5JMK3]","PapD-like domain containing protein. (Os01t0936800-01);Similar to VAP27-2. (Os01t0936800-02)",1,41117216,41122215,"GO:0005789;GO:0016020;GO:0016021","endoplasmic reticulum membrane;membrane;integral component of membrane","The lipid bilayer surrounding the endoplasmic reticulum. [GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0449600-01",1.7527887933669302E-4,0.0205966166211332,3.71004022661996,"OS11G0449600",null,10.1925391942615,8.23464210728365,114.157492809395,126.995303471835,"up","OS11G0449600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53JD9]","Conserved hypothetical protein. (Os11t0449600-01)",11,15075242,15075772]
["OS05T0319800-02",0.000179964291433968,0.0208267766359492,8.08522534299225,"OS05G0319800",null,0,1.02933026341046,117.623994854178,161.919951350983,"up","OS05G0319800","Plasma membrane ATPase [Source:UniProtKB/TrEMBL;Acc:Q0DJ73]","Similar to Plasma membrane H+ ATPase (EC 3.6.3.6). (Os05t0319800-01);Similar to Plasma membrane H+ ATPase. (Os05t0319800-02)",5,14848337,14852841,"GO:0016021;GO:0016020;GO:0006754;GO:0008553;GO:0015992;GO:1902600;GO:0006810;GO:0016887;GO:0000166;GO:0006811;GO:0016787;GO:0005524","integral component of membrane;membrane;ATP biosynthetic process;hydrogen-exporting ATPase activity, phosphorylative mechanism;proton transport;hydrogen ion transmembrane transport;transport;ATPase activity;nucleotide binding;ion transport;hydrolase activity;ATP binding","The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators, ISBN:0198506732];Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. [EC:3.6.3.6];The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS03T0289100-02",0.000182338125108874,0.0208395696433683,0.585703471194139,"OS03G0289100",null,3054.43214597014,3009.76715890935,4434.32627690161,4666.64575400997,"up","OS03G0289100",null,"Serine/threonine protein kinase, Carbohydrate metabolism (Os03t0289100-01);Similar to OSK3. (Os03t0289100-02)",3,10006390,10011736,"GO:0006468;GO:0035556;GO:0004674;GO:0005634;GO:0005737;GO:0016310;GO:0016301;GO:0005524;GO:0000166;GO:0004672;GO:0016740;","protein phosphorylation;intracellular signal transduction;protein serine/threonine kinase activity;nucleus;cytoplasm;phosphorylation;kinase activity;ATP binding;nucleotide binding;protein kinase activity;transferase activity;","The process of introducing a phosphate group on to a protein. [GOC:hb];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];"]
["OS03T0655400-01",1.8266466028267201E-4,0.0208395696433683,0.563082082311357,"OS03G0655400",null,3015.97234758199,2925.35660861252,4408.2354915628,4369.61532638092,"up","OS03G0655400","Dehydrin family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q40711]","Similar to LIP5. (Os03t0655400-01)",3,25563660,25564431]
["OS06T0294950-01",1.8348534413675303E-4,0.0208395696433683,5.99111527184995,"OS06G0294950",null,6.7801660397079,16.6467572859854,906.476513358708,583.641485296791,"up","OS06G0294950","Os06g0294950 protein [Source:UniProtKB/TrEMBL;Acc:C7J397]","Conserved hypothetical protein. (Os06t0294950-01)",6,10865395,10867828]
["OS09T0258000-01",1.82308147907727E-4,0.0208395696433683,0.590414170804323,"OS09G0258000",null,2431.44329870911,2343.7383491875,3516.17368783375,3673.71674298165,"up","OS09G0258000","Os09g0258000 protein [Source:UniProtKB/TrEMBL;Acc:Q6K407]","Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein. (Os09t0258000-01);Similar to predicted protein. (Os09t0258000-02)",9,4349564,4355176]
["OS01T0818000-01",0.000184722517361239,0.0209023790756317,0.571927604141623,"OS01G0818000",null,3290.38422975791,3320.80632859189,4814.16234202114,5013.42787832028,"up","OS01G0818000","Os01g0818000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JI87]","Auxin efflux carrier domain containing protein. (Os01t0818000-01);Auxin efflux carrier domain containing protein. (Os01t0818000-02)",1,34834574,34839504,"GO:0055085;GO:0016021;GO:0016020","transmembrane transport;integral component of membrane;membrane","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS01T0646800-01",1.8885335976162802E-4,0.0212909514665581,0.8935979466237151,"OS01G0646800",null,388.046280896413,410.654270529951,730.763253577603,753.065457976339,"up","OS01G0646800","Os01g0646800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5W1]","Conserved hypothetical protein. (Os01t0646800-01)",1,26065944,26071738,"GO:0000723;GO:0003678;GO:0032508;GO:0004386;GO:0006281","telomere maintenance;DNA helicase activity;DNA duplex unwinding;helicase activity;DNA repair","Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS07T0258501-00",1.9800291806087102E-4,0.0219977641912572,4.99984548605201,"OS07G0258501",null,7.572793107331,12.7730516951615,329.198074081703,321.799233461897,"up","OS07G0258501","Os07g0258501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0X485]","Hypothetical protein. (Os07t0258501-00)",7,8969212,8970359]
["OS06T0500700-01",0.000204057181239223,0.02234258571306,0.9341801850515851,"OS06G0500700",null,651.303254513312,729.795156758013,1251.82960063636,1387.17946869236,"up","OS06G0500700","Os06g0500700 protein [Source:UniProtKB/TrEMBL;Acc:B7F8Q5]","Cytochrome P450 family protein. (Os06t0500700-01)",6,17630572,17632343,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS08T0548650-00",0.000216606990731482,0.0232202694064149,1.64346551583555,"OS08G0548650",null,69.3092665209785,63.8184763314483,200.019538683128,215.89201590212,"up","OS08G0548650",null,"Hypothetical gene. (Os08t0548650-00)",8,27519879,27520601]
["OS09T0440700-02",2.1594937826908202E-4,0.0232202694064149,1.75918495925693,"OS09G0440700","COPT5.1",330.238269894074,293.35912507198,916.187057675402,1194.73273958504,"up","OS09G0440700","Copper transporter 5.1 [Source:UniProtKB/Swiss-Prot;Acc:Q69P80]","Ctr copper transporter family protein. (Os09t0440700-02)",9,16347080,16347891,"GO:0035434;GO:0005375;GO:0006810;GO:0006811;GO:0016021;GO:0006825;GO:0016020","copper ion transmembrane transport;copper ion transmembrane transporter activity;transport;ion transport;integral component of membrane;copper ion transport;membrane","The directed movement of copper cation across a membrane. [GOC:vw];Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS07T0691200-04",2.2036613482044002E-4,0.0233630373386488,0.6674315185200651,"OS07G0691200",null,1069.03055798727,988.52370639606,1607.08200074337,1660.81383486588,"up","OS07G0691200","Os07g0691200 protein [Source:UniProtKB/TrEMBL;Acc:Q7XI67]","Similar to D-alanine--D-alanine ligase B (EC 6.3.2.4) (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B). (Os07t0691200-01);Similar to D-alanine--D-alanine ligase family. (Os07t0691200-02);Similar to predicted protein. (Os07t0691200-03);Hypothetical conserved gene. (Os07t0691200-04)",7,29392447,29401888,"GO:0008716;GO:0046872;GO:0005524;GO:0000166;;GO:0003824","D-alanine-D-alanine ligase activity;metal ion binding;ATP binding;nucleotide binding;;catalytic activity","Catalysis of the reaction: 2 D-alanine + ATP = D-alanyl-D-alanine + ADP + 2 H(+) + phosphate. [EC:6.3.2.4, RHEA:11227];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];;Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS10T0160600-02",2.3066091395260502E-4,0.0240517141402047,0.815100076753638,"OS10G0160600",null,382.027603902283,384.899222194456,675.332860402585,674.013685466009,"up","OS10G0160600","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q33AW3]","Conserved hypothetical protein. (Os10t0160600-02)",10,3868240,3871256]
["OS04T0644750-00",2.3262772135159202E-4,0.024092346246555398,0.837126221577496,"OS04G0644750",null,444.421863535743,406.859312529343,755.438837299039,765.364766610557,"up","OS04G0644750","Os04g0644750 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WFH2]","Hypothetical protein. (Os04t0644750-00)",4,32820774,32824538]
["OS10T0498100-01",2.3204441346376303E-4,0.024092346246555398,0.9928351213035941,"OS10G0498100",null,256.851987695391,247.116601851734,481.148244326784,521.795610240173,"up","OS10G0498100","Os10g0498100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XW79]","Alpha/beta hydrolase fold-1 domain containing protein. (Os10t0498100-01)",10,18994725,18996793,"GO:0003824","catalytic activity","Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS06T0262501-01",0.000235243983542967,0.0242809938689349,2.6257898615729003,"OS06G0262501",null,20.4719043922705,23.8381774812756,132.674650972611,140.816993835042,"up","OS06G0262501","Os06g0262501 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WV52]","Hypothetical gene. (Os06t0262501-01)",6,8575747,8578622,"GO:0015074;GO:0004190;GO:0006508;GO:0003676;GO:0008270","DNA integration;aspartic-type endopeptidase activity;proteolysis;nucleic acid binding;zinc ion binding","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS12T0226900-01",0.000236205603178623,0.0242981602300111,4.06196349562679,"OS12G0226900",null,50.9626959713077,74.6124932199432,758.236128927607,1339.14180520956,"up","OS12G0226900","NADP-dependent oxidoreductase P2, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QVJ6]","Similar to Allyl alcohol dehydrogenase. (Os12t0226900-01)",12,6916185,6918431,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS01T0775400-01",2.3966229740446702E-4,0.0244888378270946,2.3156093737148202,"OS01G0775400","CKX5",36.6931410993416,41.1732105364182,160.015630946503,227.61465929952,"up","OS01G0775400","Cytokinin dehydrogenase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZAY9]","Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12) (Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6). (Os01t0775400-01)",1,32788488,32792747,"GO:0005615;GO:0019139;GO:0009690;GO:0016614;GO:0050660;GO:0055114;GO:0016491;GO:0005576;GO:0003824","extracellular space;cytokinin dehydrogenase activity;cytokinin metabolic process;oxidoreductase activity, acting on CH-OH group of donors;flavin adenine dinucleotide binding;oxidation-reduction process;oxidoreductase activity;extracellular region;catalytic activity","That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684];Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. [EC:1.5.99.12];The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. [ISBN:0387969845];Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. [GOC:ai];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS02T0719800-01",2.3935473077986303E-4,0.0244888378270946,"Inf","OS02G0719800","ML2",0,0,84.0771347640775,91.5496862689974,"up","OS02G0719800","Protein MEI2-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZI17]","Similar to AML1. (Os02t0719800-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0719800-02);Similar to AML1. (Os02t0719800-03)",2,29859237,29867367,"GO:0003676;GO:0003723","nucleic acid binding;RNA binding","Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah]"]
["OS08T0556400-01",0.000241814203256651,0.0246263584596574,2.15963870795365,"OS08G0556400",null,401.544569859628,540.412844646709,1872.72252202859,2335.97098427809,"up","OS08G0556400","S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:Q6ZJ22]","Zinc finger, DHHC-type domain containing protein. (Os08t0556400-01);Hypothetical conserved gene. (Os08t0556400-02)",8,27842429,27847633,"GO:0019706;GO:0007031;GO:0016746;GO:0005777;GO:0005524;GO:0016020;GO:0016021;GO:0016740","protein-cysteine S-palmitoyltransferase activity;peroxisome organization;transferase activity, transferring acyl groups;peroxisome;ATP binding;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule. [EC:2.3.1.225, GOC:ai, GOC:pr];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0771400-00",2.4384278835527703E-4,0.0247504480725264,1.6125763831494,"OS02G0771400",null,115.175692895155,97.7863750239933,289.784404823849,361.448171419839,"up","OS02G0771400","Os02g0771400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DX67]","Protein-tyrosine phosphatase, SIW14-like domain containing protein. (Os02t0771400-00)",2,32538362,32542086,"GO:0004725;GO:0005737;GO:0035335;GO:0016311","protein tyrosine phosphatase activity;cytoplasm;peptidyl-tyrosine dephosphorylation;dephosphorylation","Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. [EC:3.1.3.48];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine. [GOC:bf];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732]"]
["OS02T0259100-02",2.4917502186102804E-4,0.0250420896970333,0.551444000386354,"OS02G0259100",null,1850.01265001602,1895.95550184334,2787.60759002615,2702.30292734084,"up","OS02G0259100","Loricrin-like [Source:UniProtKB/TrEMBL;Acc:Q6K246]","Conserved hypothetical protein. (Os02t0259100-01);Similar to predicted protein. (Os02t0259100-02)",2,8984621,8989570]
["OS01T0160100-01",0.000254490100118034,0.0251702119321203,1.12529402379187,"OS01G0160100",null,195.505796126169,185.080908549975,439.479894933616,390.75477991334,"up","OS01G0160100","Os01g0160100 protein [Source:UniProtKB/TrEMBL;Acc:Q9LGL5]","Similar to Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC) (Fragment). (Os01t0160100-01)",1,3136320,3140217,"GO:0016831;GO:0005622;GO:0030976;GO:0000287;GO:0046872;GO:0003824","carboxy-lyase activity;intracellular;thiamine pyrophosphate binding;magnesium ion binding;metal ion binding;catalytic activity","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS01T0842200-01",0.000255718047353661,0.0251702119321203,0.8399386980765261,"OS01G0842200",null,1206.67640689425,1226.89544361979,2105.93251875634,2250.09802033423,"up","OS01G0842200","Os01g0842200 protein [Source:UniProtKB/TrEMBL;Acc:Q5N9X3]","Similar to Scarecrow-like 9 (Fragment). (Os01t0842200-01);Similar to SCARECROW-like protein. (Os01t0842200-02)",1,36158308,36161507,"GO:0006355;GO:0006351;GO:0043565;GO:0005634;GO:0003700","regulation of transcription, DNA-templated;transcription, DNA-templated;sequence-specific DNA binding;nucleus;transcription factor activity, sequence-specific DNA binding","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH]"]
["OS04T0675000-03",0.000252140530291456,0.0251702119321203,2.653002057706,"OS04G0675000",null,171.243750248933,229.737406417442,1042.75149031704,1479.31866043996,"up","OS04G0675000","Os04g0675000 protein [Source:UniProtKB/TrEMBL;Acc:B9FDA0]","Similar to H0103C06.5 protein. (Os04t0675000-01);Hypothetical gene. (Os04t0675000-02);Non-protein coding transcript. (Os04t0675000-03)",4,34457067,34463729]
["OS07T0298900-01",0.00025514076886013,0.0251702119321203,2.5925613488656802,"OS07G0298900",null,68.2900126015523,43.2318710632392,338.569658161197,334.095336825905,"up","OS07G0298900","Os07g0298900 protein [Source:UniProtKB/TrEMBL;Acc:Q6YSW8]","Heavy metal transport/detoxification protein domain containing protein. (Os07t0298900-01)",7,11738725,11741008,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS05T0129800-01",2.59975261681876E-4,0.0252151244282688,5.08050853271146,"OS05G0129800",null,11.2117931136877,26.7625868486719,547.370542445048,737.549647086428,"up","OS05G0129800","Os05g0129800 protein [Source:UniProtKB/TrEMBL;Acc:C7J2F1]","DNA-binding WRKY domain containing protein. (Os05t0129800-01)",5,1743366,1744541,"GO:0003700;GO:0043565;GO:0006355;GO:0016020;GO:0016021","transcription factor activity, sequence-specific DNA binding;sequence-specific DNA binding;regulation of transcription, DNA-templated;membrane;integral component of membrane","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS09T0513800-01",2.6647633077568004E-4,0.0254064204195132,1.18250735735305,"OS09G0513800",null,179.388689819003,154.399539511568,381.500681098064,376.101475666589,"up","OS09G0513800","Os09g0513800 protein [Source:UniProtKB/TrEMBL;Acc:Q0J0E7]","Similar to H0425E08.1 protein. (Os09t0513800-01)",9,20001090,20006561,"GO:0000151;GO:0032436;GO:0031624;GO:0000209;GO:0042787;GO:0061630;GO:0005737;GO:0016567;GO:0004842;GO:0046872;GO:0016740","ubiquitin ligase complex;positive regulation of proteasomal ubiquitin-dependent protein catabolic process;ubiquitin conjugating enzyme binding;protein polyubiquitination;protein ubiquitination involved in ubiquitin-dependent protein catabolic process;ubiquitin protein ligase activity;cytoplasm;protein ubiquitination;ubiquitin-protein transferase activity;metal ion binding;transferase activity","A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex. [GOC:jh2, PMID:9529603];Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:mah];Interacting selectively and non-covalently with a ubiquitin conjugating enzyme, any of the E2 proteins. [GOC:vp];Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:0815316194];The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators];Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. [GOC:BioGRID, GOC:dph, GOC:mah, GOC:tb, PMID:22863777];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process in which one or more ubiquitin groups are added to a protein. [GOC:ai];Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. [GOC:BioGRID, GOC:jh2, PMID:9635407];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0751100-02",0.000274536750392943,0.0254171115091066,3.3421566800299,"OS03G0751100",null,306.73983407894,193.832246148038,2070.52474380753,3005.87757427892,"up","OS03G0751100","Oligopeptide transporter 3, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q75LM0]","Iron-deficiency-regulated oligopeptide transporter, Iron homeostasis (Os03t0751100-01);Similar to Glutathione transporter. (Os03t0751100-02)",3,30959746,30963711,"GO:0055085;GO:0016020;GO:0016021;GO:0046915;GO:0006875;GO:0055072;GO:1990388;GO:0005886;GO:0009506","transmembrane transport;membrane;integral component of membrane;transition metal ion transmembrane transporter activity;cellular metal ion homeostasis;iron ion homeostasis;xylem-to-phloem iron transport;plasma membrane;plasmodesma","The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Enables the transfer of transition metal ions from one side of a membrane to the other. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];Any process involved in the maintenance of an internal steady state of metal ions at the level of a cell. [GOC:ai, GOC:mah];Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah];The directed movement of iron ions into the phloem from the xylem. [GOC:tb, PMID:24867923];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [ISBN:0198506732]"]
["OS06T0684000-02",2.7452889480876404E-4,0.0254171115091066,0.69059351882842,"OS06G0684000",null,892.630405842422,994.67454811763,1546.99419793275,1499.01663721771,"up","OS06G0684000","External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G28220) UniProtKB/Swiss-Prot;Acc:Q1JPL4]","Similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand. (Os06t0684000-01);Similar to External rotenone-insensitive NADPH dehydrogenase. (Os06t0684000-02)",6,28504190,28508822,"GO:0005739;GO:0005509;GO:0016491;GO:0055114;GO:0003955;GO:0019646","mitochondrion;calcium ion binding;oxidoreductase activity;oxidation-reduction process;NAD(P)H dehydrogenase (quinone) activity;aerobic electron transport chain","A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];Interacting selectively and non-covalently with calcium ions (Ca2+). [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone. [EC:1.6.5.2];A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient. [GOC:ai, GOC:mtg_electron_transport]"]
["OS06T0721800-01",0.000269620810822629,0.0254171115091066,2.30497341314446,"OS06G0721800",null,200.133341160135,188.818885857035,773.678523612919,1148.36137638474,"up","OS06G0721800","Blue copper binding protein-like [Source:UniProtKB/TrEMBL;Acc:Q5Z4F3]","Cupredoxin domain containing protein. (Os06t0721800-01)",6,30658369,30659202,"GO:0046658;GO:0009055","anchored component of plasma membrane;electron carrier activity","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732]"]
["OS01T0276800-02",2.7627341866663603E-4,0.0254238117081418,"Inf","OS01G0276800",null,0,0,136.689579220726,90.724819579947,"up","OS01G0276800","Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q5NBP9]","Mannose-6-phosphate receptor, binding domain containing protein. (Os01t0276800-01);Similar to predicted protein. (Os01t0276800-02);Hypothetical conserved gene. (Os01t0276800-03);Similar to predicted protein. (Os01t0276800-04);Similar to predicted protein. (Os01t0276800-05)",1,9702737,9709686,"GO:0006491;GO:0005736;GO:0005666;GO:0005665;GO:0006383;GO:0006366;GO:0006360;GO:0001055;GO:0001056;GO:0001054;GO:0003899;GO:0007018;GO:0008017;GO:0003777;GO:0006351;GO:0003677;GO:0005524;GO:0000166;GO:0006952;GO:0005783;GO:0042742","N-glycan processing;DNA-directed RNA polymerase I complex;DNA-directed RNA polymerase III complex;DNA-directed RNA polymerase II, core complex;transcription from RNA polymerase III promoter;transcription from RNA polymerase II promoter;transcription from RNA polymerase I promoter;RNA polymerase II activity;RNA polymerase III activity;RNA polymerase I activity;DNA-directed 5'-3' RNA polymerase activity;microtubule-based movement;microtubule binding;microtubule motor activity;transcription, DNA-templated;DNA binding;ATP binding;nucleotide binding;defense response;endoplasmic reticulum;defense response to bacterium","The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. [ISBN:0879695595, PMID:12736198];RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. [GOC:krc, GOC:mtg_sensu];The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. [GOC:jl, GOC:txnOH];The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:0321000382];The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter. [GOC:jl, GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [GOC:txnOH];Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. [EC:2.7.7.6, GOC:pf];A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components.  Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. [GOC:cjm, ISBN:0815316194];Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. [GOC:krc];Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). [GOC:mah, ISBN:0815316194];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]"]
["OS01T0136700-01",2.78539047921265E-4,0.0255430851756435,2.86682263098107,"OS01G0136700",null,13.25030095254,13.3812934243359,97.7648403410508,96.5011478828614,"up","OS01G0136700","Os01g0136700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UXW0]","Conserved hypothetical protein. (Os01t0136700-01)",1,1971228,1975465,"GO:0030247;GO:0016020;GO:0016021","polysaccharide binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0505400-01",2.8370744337777304E-4,0.0255430851756435,0.6078312752801981,"OS01G0505400",null,2042.86317595196,1888.86591313259,2908.43716249956,3083.38661178218,"up","OS01G0505400","Os01g0505400 protein [Source:UniProtKB/TrEMBL;Acc:B7EAG8]","Similar to 2-hydroxyphytanoyl-CoA lyase. (Os01t0505400-01);Similar to 2-hydroxyphytanoyl-CoA lyase. (Os01t0505400-02)",1,17560761,17564889,"GO:0016831;GO:0030976;GO:0000287;GO:0046872;GO:0016829;GO:0003824;GO:0009082;GO:0003984;GO:0008652;GO:0050660;GO:0009097;GO:0016740;GO:0009099;GO:0005829","carboxy-lyase activity;thiamine pyrophosphate binding;magnesium ion binding;metal ion binding;lyase activity;catalytic activity;branched-chain amino acid biosynthetic process;acetolactate synthase activity;cellular amino acid biosynthetic process;flavin adenine dinucleotide binding;isoleucine biosynthetic process;transferase activity;valine biosynthetic process;cytosol","Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. [http://www.mercksource.com/];Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. [CHEBI:45931, GOC:mlg];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [CHEBI:22918, GOC:ai];Catalysis of the reaction: 2 pyruvate = 2-acetolactate + CO2. [EC:2.2.1.6];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. [GOC:ai];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid. [GOC:ai];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0851100-01",2.8217323139424603E-4,0.0255430851756435,1.3390012261569901,"OS01G0851100",null,199.773768207526,224.963510849105,482.490411950194,591.993491568709,"up","OS01G0851100","Os01g0851100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VAH3]","GDP-fucose protein O-fucosyltransferase domain containing protein. (Os01t0851100-01);Similar to predicted protein. (Os01t0851100-02)",1,36643577,36648018,"GO:0005737;","cytoplasm;","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];"]
["OS03T0431600-00",0.000280315510555325,0.0255430851756435,3.39916177114528,"OS03G0431600",null,144.868076812975,265.699535028212,2269.20007068015,2062.26024431986,"up","OS03G0431600","Os03g0431600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZV9]","Hypothetical conserved gene. (Os03t0431600-00)",3,18119653,18121181]
["OS09T0294000-02",2.84257952334341E-4,0.0255430851756435,0.6555415353999371,"OS09G0294000",null,751.596040103118,735.588499871215,1198.14108260559,1144.48259025707,"up","OS09G0294000","Aspartate kinase-homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q69LG7]","Similar to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)]. (Os09t0294000-01);Similar to Aspartate kinase-homoserine dehydrogenase. (Os09t0294000-02)",9,6995055,7009477,"GO:0004072;GO:0008652;GO:0016310;GO:0006520;GO:0050661;GO:0016491;GO:0055114;GO:0009067;GO:0004412;GO:0009570;GO:0016301;GO:0009090","aspartate kinase activity;cellular amino acid biosynthetic process;phosphorylation;cellular amino acid metabolic process;NADP binding;oxidoreductase activity;oxidation-reduction process;aspartate family amino acid biosynthetic process;homoserine dehydrogenase activity;chloroplast stroma;kinase activity;homoserine biosynthetic process","Catalysis of the reaction: L-aspartate + ATP = 4-phospho-L-aspartate + ADP + H(+). [EC:2.7.2.4, RHEA:23779];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways resulting in the formation of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai];Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+. [EC:1.1.1.3];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The chemical reactions and pathways resulting in the formation of homoserine, alpha-amino-gamma-hydroxybutyric acid. [GOC:go_curators, ISBN:0198506732]"]
["OS09T0456200-01",0.000283679853840425,0.0255430851756435,0.7516246427095481,"OS09G0456200",null,457.645009822343,490.990535646788,809.835205399982,787.370881525379,"up","OS09G0456200","Os09g0456200 protein [Source:UniProtKB/TrEMBL;Acc:Q67TQ5]","Similar to BZIP transcription factor ABI5. (Os09t0456200-01)",9,17190097,17194010,"GO:0003700;GO:0006355","transcription factor activity, sequence-specific DNA binding;regulation of transcription, DNA-templated","Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS06T0665500-01",2.8868732598442303E-4,0.0257610574717788,0.898805203653913,"OS06G0665500","AAH",1102.8327408191,938.749200230336,1906.52770042357,1900.04511732861,"up","OS06G0665500","Probable allantoate deiminase [Source:UniProtKB/Swiss-Prot;Acc:Q655X8]","Peptidase M20 domain containing protein. (Os06t0665500-01)",6,27495307,27499531,"GO:0016813;GO:0005783;GO:0008237;GO:0016787;GO:0046872;GO:0006508;GO:0008152;GO:0006144;GO:0000256;GO:0047652;GO:0006145;GO:0010136","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines;endoplasmic reticulum;metallopeptidase activity;hydrolase activity;metal ion binding;proteolysis;metabolic process;purine nucleobase metabolic process;allantoin catabolic process;allantoate deiminase activity;purine nucleobase catabolic process;ureide catabolic process","Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. [ISBN:0198506732];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [CHEBI:26386, GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: allantoate + H2O + H+ = CO2 + NH3 + ureidoglycine. [EC:3.5.3.9, MetaCyc:ALLANTOATE-DEIMINASE-RXN];The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium. [GOC:pz]"]
["OS04T0652400-01",2.93283697073208E-4,0.025991166629160598,1.87769028389559,"OS04G0652400",null,37.7123950187677,38.377323382166,139.9244215541,139.694833819019,"up","OS04G0652400","Probable sulfate transporter 3.3 [Source:Projected from Arabidopsis thaliana (AT1G23090) UniProtKB/Swiss-Prot;Acc:Q9SXS2]","Ortholog of the sulfate transporter family group 3 , Grain metabolism (Os04t0652400-01);Similar to OSIGBa0113E10.13 protein. (Os04t0652400-02)",4,33215040,33220582,"GO:1902358;GO:0008272;GO:0015116;GO:0008271;GO:0055085;GO:0016021;GO:0016020;GO:0005887;GO:0006810","sulfate transmembrane transport;sulfate transport;sulfate transmembrane transporter activity;secondary active sulfate transmembrane transporter activity;transmembrane transport;integral component of membrane;membrane;integral component of plasma membrane;transport","The directed movement of sulfate across a membrane. [GOC:dph, GOC:TermGenie, PMID:9055073];The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other. [GOC:ai];Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah]"]
["OS07T0495000-01",3.0120760315344603E-4,0.026520157612519003,0.522294763447924,"OS07G0495000","UGLYAH",2278.03250991745,2301.58246898578,3195.43409359632,3381.98262014995,"up","OS07G0495000","Probable (S)-ureidoglycine aminohydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q7F1K9]","RmlC-like jelly roll fold domain containing protein. (Os07t0495000-01)",7,18509998,18515145,"GO:0005783;GO:0046872;GO:0016787;GO:0006144;GO:0000256;GO:0071522;GO:0006145;GO:0010136","endoplasmic reticulum;metal ion binding;hydrolase activity;purine nucleobase metabolic process;allantoin catabolic process;ureidoglycine aminohydrolase activity;purine nucleobase catabolic process;ureide catabolic process","The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [CHEBI:26386, GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. [GOC:mah, ISBN:0198547684];Catalysis of the reaction: ureidoglycine + H2O = S-ureidoglycolate + NH3. [MetaCyc:URUR-RXN, PMID:19935661, PMID:20038185];The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [GOC:go_curators];The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium. [GOC:pz]"]
["OS03T0833800-01",3.0966396951685E-4,0.0270310102762252,0.5942658853842181,"OS03G0833800",null,1040.6582517341,1119.91132659058,1616.74329559972,1645.07762343516,"up","OS03G0833800","Glycoside hydrolase family 28 protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q75LI0]","Pectin lyase fold/virulence factor domain containing protein. (Os03t0833800-01)",3,35037354,35041627,"GO:0004650;GO:0008152;GO:0016798;GO:0005975;GO:0016787;GO:0005576;GO:0071555","polygalacturonase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity;extracellular region;cell wall organization","Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS08T0137300-01",0.000319507191017856,0.0274974188731761,1.56023958300972,"OS08G0137300",null,92.1897906609876,120.535862909597,297.379447654717,329.954488287826,"up","OS08G0137300","Os08g0137300 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJW6]","Protein of unknown function DUF604 family protein. (Os08t0137300-01)",8,2108318,2112027,"GO:0005794","Golgi apparatus","A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. [ISBN:0198506732]"]
["OS03T0120100-01",3.2373850193982804E-4,0.0277054865861782,1.63784265767317,"OS03G0120100",null,68.2900126015523,59.7011552778064,215.63081975108,182.677859609486,"up","OS03G0120100","LEM3 family/CDC50 family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10SJ9]","Protein of unknown function DUF284, transmembrane eukaryotic family protein. (Os03t0120100-01)",3,1102854,1106636,"GO:0006396;GO:0003723;GO:0016020;GO:0016021","RNA processing;RNA binding;membrane;integral component of membrane","Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0847800-01",0.000339946621485425,0.0286117057289881,1.19211058102034,"OS01G0847800",null,190.600482932691,181.16212636024,382.476386164811,466.951961996441,"up","OS01G0847800","Os01g0847800 protein [Source:UniProtKB/TrEMBL;Acc:C7IWJ1]","Similar to Aldose reductase (EC 1.1.1.21) (AR) (Aldehyde reductase) (20-alpha- hydroxysteroid dehydrogenase) (EC 1.1.1.149) (20-alpha-HSD). (Os01t0847800-01);Aldo-keto reductase (Os01t0847800-02)",1,36418161,36420029,"GO:0016491;GO:0055114","oxidoreductase activity;oxidation-reduction process","Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]"]
["OS05T0438800-01",3.4328051957739804E-4,0.0288129297640898,0.8543912563799051,"OS05G0438800",null,1414.17679558362,1657.49887651995,2801.0805389472,2752.49590580956,"up","OS05G0438800","Actin [Source:UniProtKB/TrEMBL;Acc:Q75HX0]","Similar to Actin 1. (Os05t0438800-01)",5,21500616,21504228,"GO:0005524;GO:0000166","ATP binding;nucleotide binding","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS04T0675000-02",3.4974234560418405E-4,0.029150284423722198,3.02768530624968,"OS04G0675000",null,44.8471724547508,74.2840388043313,420.021397190803,551.493919727354,"up","OS04G0675000","Os04g0675000 protein [Source:UniProtKB/TrEMBL;Acc:B9FDA0]","Similar to H0103C06.5 protein. (Os04t0675000-01);Hypothetical gene. (Os04t0675000-02);Non-protein coding transcript. (Os04t0675000-03)",4,34457067,34463729]
["OS05T0148700-02",3.5588847950664604E-4,0.0293213350373462,1.04726070432351,"OS05G0148700",null,296.570361172604,357.019916767331,668.627846591198,682.083253167453,"up","OS05G0148700","Os05g0148700 protein [Source:UniProtKB/TrEMBL;Acc:Q65XF2]","Armadillo-type fold domain containing protein. (Os05t0148700-01);Similar to OSA15 protein. (Os05t0148700-02)",5,2786118,2791149,"GO:0010150;GO:0010228;GO:0034599;GO:0072593;GO:0009507","leaf senescence;vegetative to reproductive phase transition of meristem;cellular response to oxidative stress;reactive oxygen species metabolic process;chloroplast","The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:0387987819];The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah];The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208]"]
["OS11T0618700-01",3.56780967313038E-4,0.0293213350373462,1.64624133735501,"OS11G0618700",null,416.294747900076,404.349685489666,1090.38215351515,1478.37501137323,"up","OS11G0618700","Os11g0618700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y4E0]","Protein of unknown function DUF594 domain containing protein. (Os11t0618700-01)",11,24089403,24092787,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0535400-01",3.72571895103723E-4,0.030273448242577,0.538208715215562,"OS02G0535400",null,1266.93262184671,1342.24666348723,1924.09039162502,1864.87718713641,"up","OS02G0535400","Cysteine and histidine-rich domain-containing protein RAR1 [Source:Projected from Arabidopsis thaliana (AT5G51700) UniProtKB/Swiss-Prot;Acc:Q9SE33]","Cys- and His-rich domain (CHORD, zinc binding finger motif) containing protein, Innate-immune response (Os02t0535400-01)",2,19727120,19729886,"GO:0042742;GO:0050832;GO:0005515;GO:0006952;GO:0005737;GO:0046872;GO:0005634;GO:0008270;GO:0051879;GO:0002679;GO:0009626;GO:0009816;GO:0009817;GO:0050821;GO:0017048","defense response to bacterium;defense response to fungus;protein binding;defense response;cytoplasm;metal ion binding;nucleus;zinc ion binding;Hsp90 protein binding;respiratory burst involved in defense response;plant-type hypersensitive response;defense response to bacterium, incompatible interaction;defense response to fungus, incompatible interaction;protein stabilization;Rho GTPase binding","Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl];Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Interacting selectively and non-covalently with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size. [GOC:ai];A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [GOC:add, ISBN:0781735149, PMID:12789499];The rapid, localized death of plant cells in response to invasion by a pathogen. [ISBN:0582227089];A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr];A response of an organism to a fungus that prevents the occurrence or spread of disease. [GOC:lr];Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation. [GOC:ai];Interacting selectively and non-covalently with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton. [ISBN:0198547684, PMID:12581856]"]
["OS02T0586900-01",3.7696810361329604E-4,0.030468596565062,4.84647124413376,"OS02G0586900",null,47.0555559468407,44.4327563705513,1328.09721335375,1303.98126346914,"up","OS02G0586900","Os02g0586900 protein [Source:UniProtKB/TrEMBL;Acc:Q6YY11]","Hypothetical conserved gene. (Os02t0586900-01);Similar to Glycine rich protein (Fragment). (Os02t0586900-02)",2,22622384,22623161]
["OS01T0878700-02",0.000391044082266781,0.0312330800938266,1.9696143809631401,"OS01G0878700",null,157.605404130743,189.324272555864,571.156475050195,787.64015136796,"up","OS01G0878700","Os01g0878700 protein [Source:UniProtKB/TrEMBL;Acc:Q5N9H2]","Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-02);Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-03)",1,38133475,38137770,"GO:0003333;GO:0015171;GO:0005886;GO:0016020;GO:0016021","amino acid transmembrane transport;amino acid transmembrane transporter activity;plasma membrane;membrane;integral component of membrane","The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb];Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0175600-01",3.9261541330351605E-4,0.031237463820961004,0.5913955203732311,"OS03G0175600",null,1601.24790741849,1656.19239382742,2323.15376392453,2584.84286912674,"up","OS03G0175600","Omega-amidase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G12040) UniProtKB/Swiss-Prot;Acc:Q8RUF8]","Similar to Nit protein 2 (CUA002). (Os03t0175600-01)",3,4024383,4028509,"GO:0016810;GO:0006807;GO:0016787;GO:0008270;GO:0050152;GO:0006107;GO:0006108;GO:0005829;GO:0009507;GO:0009570","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;nitrogen compound metabolic process;hydrolase activity;zinc ion binding;omega-amidase activity;oxaloacetate metabolic process;malate metabolic process;cytosol;chloroplast;chloroplast stroma","Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. [GOC:jl];The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];Catalysis of the reaction: a monoamide of a dicarboxylic acid + H2O = a dicarboxylate + NH3. [EC:3.5.1.3, MetaCyc:OMEGA-AMIDASE-RXN];The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle. [ISBN:0198506732];The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. [ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. [ISBN:0198547684]"]
["OS03T0572900-01",4.01000189369052E-4,0.0314885152274687,0.884850688100099,"OS03G0572900",null,1404.53190096924,1499.73419378903,2471.41202933872,2891.5287788247,"up","OS03G0572900","Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:Q75L61]","Multi antimicrobial extrusion protein MatE family protein. (Os03t0572900-01)",3,20868361,20875711,"GO:0006855;GO:0015297;GO:0015238;GO:0055085;GO:0016020;GO:0016021","drug transmembrane transport;antiporter activity;drug transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. [ISBN:0198506732];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS03T0640300-01",0.000407107996689256,0.0314885152274687,0.8854049090533881,"OS03G0640300",null,313.254373121935,295.696041405151,525.713250300757,599.190504422307,"up","OS03G0640300","Os03g0640300 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KHP9]","Similar to phosphatidylinositol N-acetylglucosaminyltransferase subunit P. (Os03t0640300-01)",3,24630180,24634746,"GO:0006506;GO:0017176;GO:0016757;GO:0000506;GO:0016020;GO:0016021;GO:0016740","GPI anchor biosynthetic process;phosphatidylinositol N-acetylglucosaminyltransferase activity;transferase activity, transferring glycosyl groups;glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex;membrane;integral component of membrane;transferase activity","The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol. [EC:2.4.1.198];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];An enzyme complex that catalyzes the transfer of GlcNAc from UDP-GlcNAc to an acceptor phosphatidylinositol, the first step in the production of GPI anchors for cell surface proteins. The complex contains PIG-A, PIG-C, PIG-H, PIG-Q, PIG-P, and DPM2 in human, and Eri1p, Gpi1p, Gpi2p, Gpi15p, Gpi19p, and Spt14p in budding yeast. [GOC:kp, GOC:rb, PMID:10944123, PMID:15163411];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS07T0628500-02",4.0438606697425303E-4,0.0314885152274687,0.7846323247837761,"OS07G0628500","BHLH062",1038.61974389525,1010.80231866907,1634.30598680117,1896.13756952948,"up","OS07G0628500","Transcription factor BHLH062 [Source:UniProtKB/Swiss-Prot;Acc:Q69V10]","Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os07t0628500-01);Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os07t0628500-02)",7,26039699,26042226,"GO:0005634;GO:0046983;GO:0003677;GO:0006355;GO:0006351","nucleus;protein dimerization activity;DNA binding;regulation of transcription, DNA-templated;transcription, DNA-templated","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS09T0536700-02",4.0521236202146804E-4,0.0314885152274687,1.42360504234497,"OS09G0536700",null,1602.52697835215,1579.24421087037,3689.53985537088,4845.72033436935,"up","OS09G0536700","Os09g0536700 protein [Source:UniProtKB/TrEMBL;Acc:Q69JG4]","Similar to predicted protein. (Os09t0536700-01);Nodulin-like domain containing protein. (Os09t0536700-02)",9,21110946,21114330,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS11T0421800-01",4.0704194432261606E-4,0.0314885152274687,2.10788921729499,"OS11G0421800",null,33.6353793410631,34.9972289559555,122.938838410118,172.908990111653,"up","OS11G0421800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q53JV2]","Conserved hypothetical protein. (Os11t0421800-01)",11,13200164,13202462]
["OS11T0432900-02",0.000403030610587592,0.0314885152274687,0.556713489432208,"OS11G0432900",null,1156.03600498509,1102.31866071648,1623.68979253287,1698.1570618431,"up","OS11G0432900","Carboxypeptidase [Source:UniProtKB/TrEMBL;Acc:Q2R5M2]","Peptidase S10, serine carboxypeptidase family protein. (Os11t0432900-01);Similar to Serine carboxypeptidase. (Os11t0432900-02)",11,13971700,13979647,"GO:0019748;GO:0016747;GO:0004185;GO:0004180;GO:0006508;GO:0016787;GO:0008233","secondary metabolic process;transferase activity, transferring acyl groups other than amino-acyl groups;serine-type carboxypeptidase activity;carboxypeptidase activity;proteolysis;hydrolase activity;peptidase activity","The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. [GOC:go_curators];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [http://merops.sanger.ac.uk/about/glossary.htm#CARBOXYPEPTIDASE, http://merops.sanger.ac.uk/about/glossary.htm#CATTYPE, ISBN:0716720094];Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. [GOC:jl, ISBN:0815332181]"]
["OS01T0130000-01",0.000408642668477622,0.0315245035058746,0.9196801389728291,"OS01G0130000","MTP7",1230.57508012661,1086.45974902424,2051.84052927991,2331.28461263329,"up","OS01G0130000","Metal tolerance protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU0]","Cation efflux protein family protein. (Os01t0130000-01);Similar to metal tolerance protein C3. (Os01t0130000-02)",1,1673503,1677066,"GO:0005774;GO:0005773;GO:0098655;GO:0008324;GO:0006812;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020","vacuolar membrane;vacuole;cation transmembrane transport;cation transmembrane transporter activity;cation transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane","The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:dos, GOC:vw];Enables the transfer of cation from one side of the membrane to the other. [GOC:dgf, GOC:mtg_transport, ISBN:0815340729];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS06T0114000-03",0.000410304837968951,0.0315245035058746,0.6315615477640041,"OS06G0114000",null,1634.56000808843,1700.55241630966,2499.75477878222,2667.13798714234,"up","OS06G0114000","Os06g0114000 protein [Source:UniProtKB/TrEMBL;Acc:Q9LWT6]","Hypothetical gene. (Os06t0114000-01);Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63 kDa stress protein) (GSP63). (Os06t0114000-02);Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment). (Os06t0114000-03);Similar to RuBisCo subunit binding-protein beta subunit (Fragment). (Os06t0114000-04)",6,811046,816535,"GO:0042026;GO:0006457;GO:0005737;GO:0005524;GO:0005739;GO:0007005;GO:0006458;GO:0051082;GO:0044183;GO:0005829;GO:0061077;GO:0009507;","protein refolding;protein folding;cytoplasm;ATP binding;mitochondrion;mitochondrion organization;'de novo' protein folding;unfolded protein binding;protein binding involved in protein folding;cytosol;chaperone-mediated protein folding;chloroplast;","The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. [GOC:mb];The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946];The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure. [GOC:mb];Interacting selectively and non-covalently with an unfolded protein. [GOC:ai];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding. [GOC:mtg_cambridge_2009];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];"]
["OS03T0327600-01",0.000416696944927036,0.0316108166166608,0.643131993212377,"OS03G0327600","R40C1",6866.00076143047,6535.09191768459,9864.3918050862,11064.3071891924,"up","OS03G0327600","Ricin B-like lectin R40C1 [Source:UniProtKB/Swiss-Prot;Acc:Q10M12]","Ricin B-related lectin domain containing protein. (Os03t0327600-01)",3,11957336,11959565,"GO:0030246","carbohydrate binding","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah]"]
["OS06T0628032-00",0.000420116186465985,0.0316108166166608,4.57279079357162,"OS06G0628032",null,3.17795417197264,7.40619070644376,108.252049481159,143.633335113387,"up","OS06G0628032","Os06g0628032 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WZ43]","Conserved hypothetical protein. (Os06t0628032-00)",6,25388856,25391421,"GO:0008643;GO:0016020;GO:0016021","carbohydrate transport;membrane;integral component of membrane","The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0702700-01",0.000414077003214647,0.0316108166166608,0.6573210324193951,"OS06G0702700",null,617.667875172249,582.600929090318,972.777951546726,920.227506695915,"up","OS06G0702700","Os06g0702700 protein [Source:UniProtKB/TrEMBL;Acc:Q5Z825]","Butirosin biosynthesis, BtrG-like domain containing protein. (Os06t0702700-01)",6,29665362,29667372]
["OS07T0418600-01",4.2184369473324406E-4,0.0316108166166608,0.8200310062902461,"OS07G0418600",null,380.987994272399,387.022923345108,723.211471324541,632.668745164889,"up","OS07G0418600",null,"Proline-rich glycoprotein, ABA-dependent inhibition of root growth (Os07t0418600-01)",7,13354235,13355291]
["OS08T0173600-01",4.2213973486506906E-4,0.0316108166166608,2.31118382811478,"OS08G0173600",null,30.5776175827846,38.0852197461869,137.574414411322,203.192485554937,"up","OS08G0173600","Os08g0173600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KPC6]","Conserved hypothetical protein. (Os08t0173600-01)",8,4300574,4301421]
["OS08T0207500-01",0.000416530802928317,0.0316108166166608,1.2522923753097,"OS08G0207500","ZIP4",699.782721084293,791.554972562641,1590.96411741746,1961.69520284068,"up","OS08G0207500","Zinc transporter 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6ZJ91]","Similar to Zinc transporter ZIP1 (Fragment). (Os08t0207500-01)",8,6267823,6270904,"GO:0071577;GO:0005385;GO:0046873;GO:0005886;GO:0030001;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0006829","zinc II ion transmembrane transport;zinc ion transmembrane transporter activity;metal ion transmembrane transporter activity;plasma membrane;metal ion transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;zinc II ion transport","A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah];Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. [GOC:dgf];Enables the transfer of metal ions from one side of a membrane to the other. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS03T0112800-01",0.000425681496604466,0.031798095560537004,0.7712614679110541,"OS03G0112800",null,392.412758979069,441.582683003086,718.118929125768,705.312377743578,"up","OS03G0112800","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q10SS2]","Protein of unknown function DUF726 family protein. (Os03t0112800-01)",3,721115,725224,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS05T0114700-02",0.000430532995915709,0.032082058759065196,0.8859394758091971,"OS05G0114700",null,27120.0834079258,23438.0182203366,48559.938313968,44869.7962726485,"up","OS05G0114700","Os05g0114700 protein [Source:UniProtKB/TrEMBL;Acc:C7J250]","Myb-type HTH DNA-binding domain domain containing protein. (Os05t0114700-02)",5,801229,803353,"GO:0003677","DNA binding","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS04T0485300-02",0.000440486710325219,0.032367710872862096,0.6161189087657181,"OS04G0485300",null,3978.21748546562,4268.2799027906,6031.685302796,6608.10294078692,"up","OS04G0485300","Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q7X7I6]","Glucose-6-phosphate dehydrogenase. (Os04t0485300-01);Glucose-6-phosphate dehydrogenase. (Os04t0485300-02);Similar to Glucose-6-phosphate 1-dehydrogenase. (Os04t0485300-03);Similar to Glucose-6-phosphate 1-dehydrogenase. (Os04t0485300-04)",4,24261434,24267801,"GO:0006006;GO:0050661;GO:0004345;GO:0055114;GO:0006098;GO:0005975;GO:0016491","glucose metabolic process;NADP binding;glucose-6-phosphate dehydrogenase activity;oxidation-reduction process;pentose-phosphate shunt;carbohydrate metabolic process;oxidoreductase activity","The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:0198506732];Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. [GOC:ai];Catalysis of the reaction: D-glucose 6-phosphate + NADP+ = D-glucono-1,5-lactone 6-phosphate + NADPH + H+. [EC:1.1.1.49];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators]"]
["OS04T0659000-01",0.000444655811228675,0.0325782358385095,0.970576556366027,"OS04G0659000",null,298.641398391863,290.271134281749,522.977915776374,631.068969560043,"up","OS04G0659000","OSJNBa0011F23.14 protein [Source:UniProtKB/TrEMBL;Acc:Q8S3P6]","Similar to OSIGBa0132E09-OSIGBa0108L24.10 protein. (Os04t0659000-01)",4,33623137,33623920]
["OS01T0525350-00",4.4837911248277304E-4,0.0327724369487409,1.38915168695354,"OS01G0525350",null,79.50180571524,87.4930723898888,201.970948816622,235.429754897787,"up","OS01G0525350","Os01g0525350 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3H4]","Similar to RTFL15 (ROTUNDIFOLIA LIKE 15). (Os01t0525350-00)",1,18818271,18819071]
["OS06T0232000-01",0.000458852284784312,0.0332549142292242,"Inf","OS06G0232000",null,0,0,41.9162896674498,104.917658406732,"up","OS06G0232000","Os06g0232000 protein [Source:UniProtKB/TrEMBL;Acc:Q7XXQ8]","Similar to Pro-resilin. (Os06t0232000-01);Hypothetical conserved gene. (Os06t0232000-02);Similar to Pro-resilin. (Os06t0232000-03)",6,6816406,6819804]
["OS04T0523600-01",4.6718259980194803E-4,0.0336635914838423,1.52580097541856,"OS04G0523600",null,267.044526889652,264.537877696487,650.575718344696,880.097411107778,"up","OS04G0523600","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A0P0WCX8]","Similar to OSIGBa0153E02-OSIGBa0093I20.8 protein. (Os04t0523600-01)",4,26206039,26207769,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0129700-01",0.000477812085481267,0.0339491042688922,0.812239159291513,"OS02G0129700",null,259.430864135462,267.874250528445,456.733312430338,469.180013182813,"up","OS02G0129700","Os02g0129700 protein [Source:UniProtKB/TrEMBL;Acc:Q0E496]","Hypothetical protein. (Os02t0129700-01)",2,1551553,1553359]
["OS07T0666900-02",4.7611466173059505E-4,0.0339491042688922,1.71014631450605,"OS07G0666900",null,896.832091380703,1032.37989564973,2669.1042716661,3643.16169237223,"up","OS07G0666900","Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:Q9SXJ8]","Vacuolar Na+/H+ antiporter, Salt tolerance (Os07t0666900-01);Similar to Sodium/hydrogen exchanger. (Os07t0666900-02)",7,28164424,28169307,"GO:0098719;GO:0071805;GO:0051453;GO:0015386;GO:0015385;GO:0005774;GO:0005886;GO:0006814;GO:0055075;GO:0009651;GO:0006885;GO:0015297;GO:1902600;GO:0015299;GO:0006812;GO:0006810;GO:0055085;GO:0006811;GO:0016021;GO:0016020;GO:0035725","sodium ion import across plasma membrane;potassium ion transmembrane transport;regulation of intracellular pH;potassium:proton antiporter activity;sodium:proton antiporter activity;vacuolar membrane;plasma membrane;sodium ion transport;potassium ion homeostasis;response to salt stress;regulation of pH;antiporter activity;hydrogen ion transmembrane transport;solute:proton antiporter activity;cation transport;transport;transmembrane transport;ion transport;integral component of membrane;membrane;sodium ion transmembrane transport","The directed movement of sodium ions from outside of a cell, across the plasma membrane and into the cytosol. [GOC:dos];A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah];Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in). [TC:2.A.37.-.-];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). [TC:2.A.35.1.1, TC:2.A.36.-.-];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell. [GOC:jid, GOC:mah];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. [GOC:dph, GOC:go_curators, GOC:tb];Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). [GOC:mtg_transport, ISBN:0815340729, PMID:10839820];The directed movement of hydrogen ion (proton) across a membrane. [GO_REF:0000069, GOC:pr, GOC:TermGenie];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). [GOC:ai];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:vw]"]
["OS02T0747600-01",4.8000124424773806E-4,0.0339596209960595,0.5716253344984811,"OS02G0747600",null,709.400727920603,693.768597538647,1027.41743528456,1057.96856661537,"up","OS02G0747600","Os02g0747600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VPP6]","Similar to Transcription factor AP2D8. (Os02t0747600-01)",2,31409912,31413535,"GO:0007275;GO:0003700;GO:0003677;GO:0005634;GO:0006355;GO:0006351","multicellular organism development;transcription factor activity, sequence-specific DNA binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. [GOC:curators, GOC:txnOH];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0548700-01",0.000485605457159056,0.0341320113619754,1.37070744174831,"OS08G0548700",null,216.081830918345,207.924713208912,474.192662439026,622.276987011993,"up","OS08G0548700","Os08g0548700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XK11]","Hypothetical conserved gene. (Os08t0548700-01)",8,27520994,27521450]
["OS05T0387700-01",4.9178240131426206E-4,0.034341898077791796,0.8743681167789521,"OS05G0387700",null,826.614928654611,950.071833127851,1538.68689025997,1718.34414466891,"up","OS05G0387700","Os05g0387600 protein [Source:UniProtKB/TrEMBL;Acc:Q60E63]","Protein kinase, core domain containing protein. (Os05t0387700-01);Protein kinase, core domain containing protein. (Os05t0387700-02)",5,18757319,18760229,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0005524;GO:0004672;GO:0007165;GO:0005102","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;ATP binding;protein kinase activity;signal transduction;receptor binding","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. [GOC:bf, GOC:ceb, ISBN:0198506732]"]
["OS03T0126800-00",4.9438030112272007E-4,0.034406166195675096,1.48755009625629,"OS03G0126800",null,126.62299508118,116.012569695085,306.024886731804,374.35529950835,"up","OS03G0126800","CBL-interacting serine/threonine-protein kinase 9 [Source:Projected from Arabidopsis thaliana (AT1G01140) UniProtKB/Swiss-Prot;Acc:Q9MAM1]","Similar to CBL-interacting protein kinase 9. (Os03t0126800-00)",3,1515355,1518947,"GO:0005622;GO:0035556;GO:0018107;GO:0018105;GO:0004674;GO:0016310;GO:0016301;GO:0007165;GO:0005524;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","intracellular;intracellular signal transduction;peptidyl-threonine phosphorylation;peptidyl-serine phosphorylation;protein serine/threonine kinase activity;phosphorylation;kinase activity;signal transduction;ATP binding;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. [RESID:AA0038];The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0437800-01",5.0020907107949206E-4,0.0347326989536833,1.10404352753192,"OS12G0437800",null,197.735260368674,246.009932955099,462.484201638062,491.374135741024,"up","OS12G0437800","Os12g0437800 protein [Source:UniProtKB/TrEMBL;Acc:Q5EII3]","Similar to MPI. (Os12t0437800-01)",12,14411366,14412019,"GO:0009611;GO:0004867;GO:0010951","response to wounding;serine-type endopeptidase inhibitor activity;negative regulation of endopeptidase activity","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators];Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. [GOC:ai];Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb]"]
["OS03T0667400-01",0.000502884202633616,0.034839270201501696,0.784324553919433,"OS03G0667400",null,329.503375727154,301.359307798454,546.879613252862,539.646218724563,"up","OS03G0667400","Os03g0667400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DPS2]","Similar to Iron regulated metal transporter. (Os03t0667400-01)",3,26283668,26287175]
["OS03T0116850-01",0.000506704856893723,0.0350245402439299,0.7871114652508191,"OS03G0116850",null,387.714247009032,445.591229430066,710.605427282501,727.359842561453,"up","OS03G0116850","Os03g0116850 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KGG9]","Hypothetical gene. (Os03t0116850-01)",3,946609,948961]
["OS02T0817700-02",0.000510386725452825,0.0351201244054836,0.516046976345803,"OS02G0817700",null,5781.20823098515,5924.82499619058,8013.46571319284,8726.53112241466,"up","OS02G0817700","3-ketoacyl-CoA thiolase-like protein [Source:UniProtKB/TrEMBL;Acc:Q84P96]","Similar to 3-ketoacyl-CoA thiolase (Fragment). (Os02t0817700-02)",2,35080879,35085196,"GO:0016746;GO:0016747;GO:0008152;GO:0003824;GO:0016740","transferase activity, transferring acyl groups;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS12T0197500-03",0.000517660267096689,0.0355405763603102,0.461991327263837,"OS12G0197500","SGS3",1975.43157994452,1912.93386971569,2674.22926594747,2681.7677054621,"up","OS12G0197500","Protein SUPPRESSOR OF GENE SILENCING 3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q2QWE9]","Homolog of Arabidopsis suppressor of gene silencing 3, Cofactor of RNA-dependent RNA polymerase, Defense response to virus (Os12t0197500-01);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-02);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-03)",12,5035198,5040887,"GO:0031047;GO:0005737;GO:0050688;GO:0005655","gene silencing by RNA;cytoplasm;regulation of defense response to virus;nucleolar ribonuclease P complex","Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. [GOC:ai];A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. [GOC:mah, PMID:12045094]"]
["OS01T0800900-01",5.3342680612722306E-4,0.0360925035591044,5.12059987960757,"OS01G0800900",null,2.03850783885231,2.05866052682091,70.2507648057816,72.2896342839678,"up","OS01G0800900","Os01g0800900 protein [Source:UniProtKB/TrEMBL;Acc:C7IXG9]","Conserved hypothetical protein. (Os01t0800900-01)",1,33917599,33918536]
["OS03T0159100-01",5.4357215031899508E-4,0.0361330681268151,0.550233730102321,"OS03G0159100",null,1375.99279122531,1236.22564635596,1908.47911055707,1916.65219547493,"up","OS03G0159100","Os03g0159100 protein [Source:UniProtKB/TrEMBL;Acc:Q10RH3]","Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-). (Os03t0159100-01)",3,3165801,3168806,"GO:0007178;GO:0006468;GO:0004675;GO:0007166;GO:0005886;GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0004672","transmembrane receptor protein serine/threonine kinase signaling pathway;protein phosphorylation;transmembrane receptor protein serine/threonine kinase activity;cell surface receptor signaling pathway;plasma membrane;phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein kinase activity","A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling];The process of introducing a phosphate group on to a protein. [GOC:hb];Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [EC:2.7.11.30];A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS05T0339000-01",5.4288854363499807E-4,0.0361330681268151,0.49431098978855204,"OS05G0339000",null,1068.17810755861,1124.02864764422,1524.05131425876,1563.99600660314,"up","OS05G0339000","Os05g0339000 protein [Source:UniProtKB/TrEMBL;Acc:Q5WMP2]","VHS domain containing protein. (Os05t0339000-01)",5,15873838,15880419,"GO:0006886;GO:0005622","intracellular protein transport;intracellular","The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732]"]
["OS02T0593700-04",0.000549652791891667,0.0364273147459311,0.9388338004449581,"OS02G0593700",null,964.844256221878,882.40539568617,1923.52625534376,1617.61073766053,"up","OS02G0593700","Os02g0593700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZH84]","Similar to TA4 protein (Fragment). (Os02t0593700-01);Similar to Ubiquitin-associated protein. (Os02t0593700-02);Similar to Ubiquitin-associated protein. (Os02t0593700-03);Similar to TA4 protein (Fragment). (Os02t0593700-04)",2,22981859,22987590,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS01T0323775-00",0.000553284485182495,0.036471958877028005,1.19110484437991,"OS01G0323775",null,20940.0046709258,20862.0401159122,41872.9038045569,53572.674208297,"up","OS01G0323775","Os01g0323775 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V1R5]","Hypothetical protein. (Os01t0323775-00)",1,12363862,12365491]
["OS02T0185200-01",5.5868279505266706E-4,0.036471958877028005,0.7890994721538771,"OS02G0185200",null,397.365836205939,398.039321559115,740.29666529806,634.159879120214,"up","OS02G0185200","Os02g0185200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZIH2]","Cytochrome P450 family protein. (Os02t0185200-01)",2,4754173,4756298,"GO:0044550;GO:0016020;GO:0016709;GO:0055114;GO:0046872;GO:0016491;GO:0004497;GO:0016705;GO:0005506;GO:0020037","secondary metabolite biosynthetic process;membrane;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen;oxidation-reduction process;metal ion binding;oxidoreductase activity;monooxygenase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor. [GOC:mah];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS08T0176100-01",5.5836159320489509E-4,0.036471958877028005,0.7288155752906921,"OS08G0176100",null,391.393505059643,420.996077734877,637.135408585769,709.219925542711,"up","OS08G0176100","Os08g0176100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XCP7]","DNA/pantothenate metabolism flavoprotein, C-terminal domain containing protein. (Os08t0176100-01)",8,4430918,4434203,"GO:0016874;GO:0015937;GO:0004632","ligase activity;coenzyme A biosynthetic process;phosphopantothenate--cysteine ligase activity","Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. [EC:6, GOC:mah];The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [ISBN:0198547684];Catalysis of the reaction: CTP + (R)-4'-phosphopantothenate + L-cysteine = CMP + diphosphate + (R)-4'-phosphopantothenoyl-L-cysteine. Cysteine can be replaced by some of its derivatives. [EC:6.3.2.5]"]
["OS07T0569600-01",0.000563166278608479,0.0366082045618005,1.5125331547043999,"OS07G0569600",null,65.2322508432739,89.8682015370388,217.936774428946,224.581197683215,"up","OS07G0569600","Os07g0569600 protein [Source:UniProtKB/TrEMBL;Acc:Q7XIH6]","Chaperonin-like RbcX domain containing protein. (Os07t0569600-01)",7,22925654,22926972,"GO:0030246;GO:0006468;GO:0005524;GO:0004672;GO:0016020;GO:0016021","carbohydrate binding;protein phosphorylation;ATP binding;protein kinase activity;membrane;integral component of membrane","Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. [CHEBI:16646, GOC:mah];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS04T0437000-01",0.000581146264263151,0.037425469192295197,1.80241546518544,"OS04G0437000",null,44.8471724547508,39.1145500095973,168.796976547225,124.064642622485,"up","OS04G0437000","OSJNBa0006B20.9 protein [Source:UniProtKB/TrEMBL;Acc:Q7XV60]","No apical meristem (NAM) protein domain containing protein. (Os04t0437000-01)",4,21733625,21734709,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]
["OS08T0118100-00",5.8186363793991407E-4,0.037425469192295197,2.1638288580697402,"OS08G0118100",null,96.8291223454846,71.0237881753215,313.53089100089,438.622240452724,"up","OS08G0118100","Os08g0118100 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZJ53]","Similar to F5O11.14 (ACR8). (Os08t0118100-00)",8,1015367,1017012]
["OS01T0735300-01",0.000587747638752521,0.0374675325954977,2.26532109033084,"OS01G0735300",null,17.3273166302446,19.6534397779465,83.7192159329477,94.0699890929766,"up","OS01G0735300","Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q0JJJ6]","UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os01t0735300-01)",1,30666642,30668299,"GO:0043231;GO:0080044;GO:0080043;GO:0016758;GO:0016757;GO:0008152;GO:0016020;GO:0016021;GO:0016740","intracellular membrane-bounded organelle;quercetin 7-O-glucosyltransferase activity;quercetin 3-O-glucosyltransferase activity;transferase activity, transferring hexosyl groups;transferase activity, transferring glycosyl groups;metabolic process;membrane;integral component of membrane;transferase activity","Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule. [PMID:15352060];Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). [GOC:jl];Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0260266-00",0.000587011100842685,0.0374675325954977,"Inf","OS03G0260266",null,0,0,83.3083486620014,91.5017442963745,"up","OS03G0260266","Os03g0260266 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VVX7]","Hypothetical protein. (Os03t0260266-00)",3,8437541,8441853]
["OS10T0463800-01",5.8685369758985808E-4,0.0374675325954977,0.5905012723286021,"OS10G0463800",null,714.496997517734,663.918019899744,1061.5671126207,1014.00865387512,"up","OS10G0463800","Os10g0463800 protein [Source:UniProtKB/TrEMBL;Acc:Q337M4]","Domain of unknown function, DUF1338, containing green-plant-unique protein, Regulation of starch synthesis and amyloplast development, Peripheral endosperm development (Os10t0463800-01)",10,17112008,17115350]
["OS08T0484500-01",0.000591544233086961,0.037495558940400096,0.9316374041020941,"OS08G0484500",null,349.400243579286,300.309037306821,613.198110948243,626.083125634761,"up","OS08G0484500","Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q6YTT3]","Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1). (Os08t0484500-01);Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2. (Os08t0484500-02)",8,23934860,23938837,"GO:0003849;GO:0009423;GO:0009073;GO:0008652;GO:0009536;GO:0009507;GO:0003824;GO:0016740","3-deoxy-7-phosphoheptulonate synthase activity;chorismate biosynthetic process;aromatic amino acid family biosynthetic process;cellular amino acid biosynthetic process;plastid;chloroplast;catalytic activity;transferase activity","Catalysis of the reaction: D-erythrose 4-phosphate + H(2)O + phosphoenolpyruvate = 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate + phosphate. [EC:2.5.1.54, RHEA:14720];The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds. [GOC:sm, ISBN:0198547684];The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators];The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS03T0116700-01",5.955093420459361E-4,0.0376687399962473,1.00316394777056,"OS03G0116700",null,397.5090285762,489.961205383377,867.401804338054,911.435524147864,"up","OS03G0116700","F-box family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10SN2]","Cyclin-like F-box domain containing protein. (Os03t0116700-01)",3,942736,944993]
["OS06T0695800-02",6.0215470302660908E-4,0.0376988329648954,1.31196326717156,"OS06G0695800","STAR1",338.392301249483,275.860510594002,689.823482190106,835.238342064763,"up","OS06G0695800","Protein STAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q0D9V6]","Phosphate transport system permease protein 1 domain containing protein. (Os06t0695800-01);Bacterial-type ATP binding cassette (ABC) transporter, Al tolerance (Os06t0695800-02)",6,29072361,29076031,"GO:0035435;GO:0005315;GO:0016887;GO:0005524;GO:0000166;GO:0016020;GO:0012506;GO:0015786;GO:0010044;GO:0005460;GO:0005515;GO:0042626;GO:0006810;GO:0055085;GO:0016021","phosphate ion transmembrane transport;inorganic phosphate transmembrane transporter activity;ATPase activity;ATP binding;nucleotide binding;membrane;vesicle membrane;UDP-glucose transport;response to aluminum ion;UDP-glucose transmembrane transporter activity;protein binding;ATPase activity, coupled to transmembrane movement of substances;transport;transmembrane transport;integral component of membrane","The directed movement of phosphate across a membrane by means of some agent such as a transporter or pore. [GOC:vw];Enables the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. [GOC:mtg_transport];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The lipid bilayer surrounding any membrane-bounded vesicle in the cell. [GOC:mah, GOC:vesicle];The directed movement of UDP-glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-glucose is a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm];Enables the transfer of a UDP-glucose from one side of the membrane to the other. UDP-glucose is a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai, GOC:mtg_transport, ISBN:0815340729];Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). [GOC:go_curators];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS08T0557200-01",0.000600975880370155,0.0376988329648954,5.0113319178486,"OS08G0557200",null,6.11552351655692,2.05866052682091,101.473326941685,162.163233664036,"up","OS08G0557200","Calcineurin-like phosphoesterase family-like [Source:UniProtKB/TrEMBL;Acc:Q6ZJ14]","Metallophosphoesterase domain containing protein. (Os08t0557200-01)",8,27884019,27885268,"GO:0016787","hydrolase activity","Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS09T0412700-01",0.000607332468880986,0.0377314191787404,0.763753940763881,"OS09G0412700",null,293.545128794732,326.297693501115,537.613491777579,514.819422535825,"up","OS09G0412700","Os09g0412700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ES39]","Conserved hypothetical protein. (Os09t0412700-01)",9,14659942,14661222,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS07T0520100-00",6.09834805151178E-4,0.0377924400952916,0.835615699545414,"OS07G0520100",null,885.271576538082,861.111118526204,1694.56928391884,1422.05757950593,"up","OS07G0520100","Os07g0520100 protein [Source:UniProtKB/TrEMBL;Acc:B9FXJ6]","Similar to taxane 10-beta-hydroxylase. (Os07t0520100-00)",7,20077825,20081243,"GO:0016125;GO:0010268;GO:0007275;GO:0004497;GO:0016132;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037","sterol metabolic process;brassinosteroid homeostasis;multicellular organism development;monooxygenase activity;brassinosteroid biosynthetic process;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding","The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:0198547684];Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602];The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:0192801023];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai]"]
["OS03T0237201-00",0.000614363572158623,0.0378428142269965,3.44857719275543,"OS03G0237201",null,9.90219396834862,11.5334871634702,108.498406460526,125.526707511451,"up","OS03G0237201","Os03g0237201 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VV60]","Hypothetical protein. (Os03t0237201-00)",3,7229093,7231307]
["OS06T0641400-01",0.00061425048515915,0.0378428142269965,2.5263674000417797,"OS06G0641400",null,20.27970353761,15.4428443814394,122.180790689361,83.6236753801385,"up","OS06G0641400","Os06g0641400 protein [Source:UniProtKB/TrEMBL;Acc:Q0DAP0]","Hypothetical protein. (Os06t0641400-01)",6,26092437,26093341]
["OS09T0511700-01",6.1324378860169206E-4,0.0378428142269965,0.510133007232698,"OS09G0511700",null,1662.75718373389,1526.05127387866,2209.87960858308,2331.5623717343,"up","OS09G0511700",null,"Similar to Prunasin hydrolase isoform PH C precursor (EC 3.2.1.118). (Os09t0511700-01)",9,19900504,19904484]
["OS08T0563400-00",6.1975206428027208E-4,0.0380979176416316,1.37189615759827,"OS08G0563400",null,63.1937430044216,74.1117789655528,186.359667748671,169.001442312519,"up","OS08G0563400","Os08g0563400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZBW8]","Similar to LOB domain protein 17. (Os08t0563400-00)",8,28212725,28213764]
["OS05T0545000-01",0.000625149647365067,0.0383525542696737,0.6717860902483691,"OS05G0545000",null,758.30124687641,748.393317061637,1197.73815443239,1202.49253969558,"up","OS05G0545000","Os05g0545000 protein [Source:UniProtKB/TrEMBL;Acc:Q65X38]","Similar to Phosphatidylinositol transfer-like protein IV. (Os05t0545000-01);Similar to Phosphatidylinositol transfer-like protein III. (Os05t0545000-02)",5,27043471,27048544,"GO:0016020;GO:0016021;GO:0005622;GO:0006810;GO:0005215","membrane;integral component of membrane;intracellular;transport;transporter activity","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf]"]
["OS01T0159800-01",6.3798991860271608E-4,0.0385214782473323,0.861138911962084,"OS01G0159800",null,230.351385790311,213.071364525964,385.403501365052,420.06138840684,"up","OS01G0159800","Os01g0159800 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0UYC0]","Similar to DNA binding protein. (Os01t0159800-01)",1,3129056,3130649,"GO:0046983","protein dimerization activity","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS07T0521400-01",0.00063765936305558,0.0385214782473323,2.95598382151702,"OS07G0521400",null,21.9064272674074,12.7962068968182,144.754708983805,124.524137910042,"up","OS07G0521400","Os07g0521400 protein [Source:UniProtKB/TrEMBL;Acc:Q0D5Z9]","Hypothetical protein. (Os07t0521400-01)",7,20157460,20162635]
["OS08T0130600-01",6.357926099863681E-4,0.0385214782473323,0.6315733974953871,"OS08G0130600",null,1170.56219413021,1277.86495650203,1797.77559367875,1995.45918568301,"up","OS08G0130600","Os08g0130600 protein [Source:UniProtKB/TrEMBL;Acc:Q7EZR6]","BTB domain containing protein. (Os08t0130600-01)",8,1723655,1729958]
["OS11T0235200-01",6.3645254485829306E-4,0.0385214782473323,0.695249695975332,"OS11G0235200",null,522.153496856503,455.826397385447,782.644122738352,800.866347969035,"up","OS11G0235200","Nitrate transporter NTL1, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q53JI5]","Peptide transporter (PTR) family transporter, Proton oligopeptide tansporter (POT), Panicle elongation (Os11t0235200-01)",11,7193230,7198486,"GO:0006810;GO:0005215;GO:0016020;GO:0016021","transport;transporter activity;membrane;integral component of membrane","The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0106400-01",0.000640511175748684,0.0385974308510331,0.660741887782454,"OS01G0106400",null,1062.10042140524,1100.82800798662,1592.15858218815,1827.20495812862,"up","OS01G0106400","Os01g0106400 protein [Source:UniProtKB/TrEMBL;Acc:Q9FTN5]","Similar to Isoflavone reductase homolog IRL (EC 1.3.1.-). (Os01t0106400-01)",1,327128,328450]
["OS01T0267100-01",0.000648295540548143,0.038857464600334006,0.48024435275925703,"OS01G0267100",null,1385.52460358337,1418.77952709401,1890.77746889584,2021.17047589317,"up","OS01G0267100","Os01g0267100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JNT2]","MT-A70 family protein. (Os01t0267100-01)",1,9159753,9165677,"GO:0032259;GO:0008168;GO:0006139;GO:0003676","methylation;methyltransferase activity;nucleobase-containing compound metabolic process;nucleic acid binding","The process in which a methyl group is covalently attached to a molecule. [GOC:mah];Catalysis of the transfer of a methyl group to an acceptor molecule. [ISBN:0198506732];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS12T0145500-01",0.000654905306756193,0.0390032493801466,0.684845759576578,"OS12G0145500",null,392.412758979069,392.174830359384,599.965905258889,661.28226786154,"up","OS12G0145500","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:Q2QXS0]","Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein. (Os12t0145500-01)",12,2236066,2239402,"GO:0000413;GO:0016853;GO:0003755","protein peptidyl-prolyl isomerization;isomerase activity;peptidyl-prolyl cis-trans isomerase activity","The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570];Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. [ISBN:0198506732];Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). [EC:5.2.1.8]"]
["OS01T0647200-04",6.5621192866839909E-4,0.039005032771745,3.38258031624967,"OS01G0647200",null,182.492998705995,389.838919661819,3011.75198549071,2957.31021783293,"up","OS01G0647200","Os01g0647200 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5W5]","Hypothetical conserved gene. (Os01t0647200-01);Non-protein coding transcript. (Os01t0647200-04)",1,26086062,26088337]
["OS01T0172100-01",6.62348615876879E-4,0.0392933493442144,0.6624742051272551,"OS01G0172100","PPT3",547.339354731845,479.667902749273,804.956680066248,820.585037818013,"up","OS01G0172100","Phosphoenolpyruvate/phosphate translocator 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5VQL3]","Similar to Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT). (Os01t0172100-01)",1,3711212,3713653,"GO:0031969;GO:0008643;GO:0009536;GO:0009507;GO:0006810;GO:0005215;GO:0016021;GO:0016020;GO:0015121;GO:0071917;GO:0015714;GO:0035436;GO:0089722","chloroplast membrane;carbohydrate transport;plastid;chloroplast;transport;transporter activity;integral component of membrane;membrane;phosphoenolpyruvate:phosphate antiporter activity;triose-phosphate transmembrane transporter activity;phosphoenolpyruvate transport;triose phosphate transmembrane transport;phosphoenolpyruvate transmembrane transport","Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells. [GOC:ai, GOC:dgf];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphoenolpyruvate(out) + phosphate(in) = phosphoenolpyruvate(in) + phosphate(out). [GOC:bf, GOC:jl];Catalysis of the transfer of a triose phosphate from one side of a membrane to the other. [GOC:mah, GOC:vw];The directed movement of phosphoenolpyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc];The directed movement of triose phosphate across a membrane by means of some agent such as a transporter or pore. Triose phosphate is any organic three carbon compound phosphate ester. [GOC:bf, ISBN:0198506732];The directed movement of phosphoenolpytuvate across a membrane. [GOC:dos]"]
["OS02T0237100-01",0.00066810265699842,0.0394054454696102,0.689222546902024,"OS02G0237100",null,328.064153314566,318.680384966085,514.859443953746,527.960744083329,"up","OS02G0237100","Thermospermine synthase ACAULIS5 [Source:Projected from Arabidopsis thaliana (AT5G19530) UniProtKB/Swiss-Prot;Acc:Q9S7X6]","Similar to Spermine synthase. (Os02t0237100-01)",2,7772399,7776161,"GO:0006596;GO:0003824;GO:0016740;GO:0010487;GO:0016768;GO:0009926;GO:0010087;GO:0048759","polyamine biosynthetic process;catalytic activity;transferase activity;thermospermine synthase activity;spermine synthase activity;auxin polar transport;phloem or xylem histogenesis;xylem vessel member cell differentiation","The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];Catalysis of the reaction: S-adenosyl-L-methioninamine + spermidine = S-methyl-5'-thioadenosine + thermospermine + H+. [EC:2.5.1.79, MetaCyc:RXN-11190, PMID:17560575];Catalysis of the reaction: S-adenosylmethioninamine + spermidine = 5'-methylthioadenosine + spermine. [EC:2.5.1.22];The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally. [GOC:sm];The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb];The process in which a relatively unspecialized cell acquires specialized features of a vessel member cell. A vessel member cell is one of the components of a vessel in the xylem. It is a dead cell with the wall between adjacent members being variously perforated and the walls that persist variously thickened. [GOC:jid, PO:0002003]"]
["OS12T0572500-01",6.6578597514009206E-4,0.0394054454696102,0.650944143413665,"OS12G0572500",null,458.664263741769,432.318710632392,711.288993658539,687.728412647478,"up","OS12G0572500","Os12g0572500 protein [Source:UniProtKB/TrEMBL;Acc:Q2QNA9]","Region of unknown function XH domain containing protein. (Os12t0572500-01)",12,23596228,23600217,"GO:0031047;GO:0005655","gene silencing by RNA;nucleolar ribonuclease P complex","Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. [GOC:mah, PMID:12045094]"]
["OS02T0196600-01",6.7071272053436607E-4,0.0394828806122658,0.51271859306516,"OS02G0196600","HMA4",1820.38750009511,1632.51779776898,2465.60670366959,2460.77822650426,"up","OS02G0196600","Copper-transporting ATPase HMA4 [Source:UniProtKB/Swiss-Prot;Acc:Q6H7M3]","Heavy metal P1B-type ATPase, Cu-transporting ATPase, Control of Cu accumulation in rice grain (Os02t0196600-01)",2,5404703,5410606,"GO:0005388;GO:0070588;GO:0005774;GO:0005773;GO:0043231;GO:0005887;GO:0099132;GO:0030001;GO:0006812;GO:0046872;GO:0019829;GO:0005507;GO:0006810;GO:0000166;GO:0006811;GO:0016787;GO:0016021;GO:0005524;GO:0016020","calcium-transporting ATPase activity;calcium ion transmembrane transport;vacuolar membrane;vacuole;intracellular membrane-bounded organelle;integral component of plasma membrane;ATP hydrolysis coupled cation transmembrane transport;metal ion transport;cation transport;metal ion binding;cation-transporting ATPase activity;copper ion binding;transport;nucleotide binding;ion transport;hydrolase activity;integral component of membrane;ATP binding;membrane","Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). [EC:3.6.3.8];A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah];The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. [GOC:go_curators];The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The transport of an inorganic cation across a membrane and against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:BHF];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). [GOC:ai];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS08T0191700-03",0.000675606816570442,0.039694498961269496,0.503708989038764,"OS08G0191700","GLYI-11",11113.7519348123,10748.287629004,15208.9743780855,15788.2060108241,"up","OS08G0191700","Lactoylglutathione lyase [Source:UniProtKB/Swiss-Prot;Acc:Q948T6]","Glyoxalase I, Abiotic stress response (Os08t0191700-01);Glyoxalase I, Splicing variant, Stress tolerance (Os08t0191700-02);Similar to Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D- lactoylglutathione methylglyoxal lyase). (Os08t0191700-03);Glyoxalase I, Splicing variant, Stress tolerance (Os08t0191700-04)",8,5373362,5377125,"GO:0004462;GO:0019863;GO:0006979;GO:0046872;GO:0016829;GO:0016151;GO:0009651;GO:0006970;GO:0019243;GO:0046686;GO:0005773;GO:0005777;GO:0005829;GO:0005886;GO:0009941","lactoylglutathione lyase activity;IgE binding;response to oxidative stress;metal ion binding;lyase activity;nickel cation binding;response to salt stress;response to osmotic stress;methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione;response to cadmium ion;vacuole;peroxisome;cytosol;plasma membrane;chloroplast envelope","Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal. [EC:4.4.1.5, RHEA:19072];Interacting selectively and non-covalently with an immunoglobulin of the IgE isotype. [GOC:add, ISBN:0781735149];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Interacting selectively and non-covalently with nickel (Ni) cations. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl];The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step. [GOC:ai, GOC:dph, PMID:2198020];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai];A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. [GOC:mtg_sensu, ISBN:0198506732];A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. [GOC:pm, PMID:9302272, UniProtKB-KW:KW-0576];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. [GOC:tb]"]
["OS02T0205500-01",6.7855541838711506E-4,0.0397841613674725,1.80066338847316,"OS02G0205500",null,114.479782574029,139.233847740961,367.61687049212,516.271646012284,"up","OS02G0205500","3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:Q6Z6C7]","Similar to Fatty acid elongase 1. (Os02t0205500-01)",2,5930298,5933077,"GO:0016746;GO:0006633;GO:0016747;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0016740","transferase activity, transferring acyl groups;fatty acid biosynthetic process;transferase activity, transferring acyl groups other than amino-acyl groups;metabolic process;catalytic activity;membrane;integral component of membrane;transferase activity","Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:0198506732];Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). [GOC:jl];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS04T0543900-02",0.000681039421156982,0.0397841613674725,0.533606957755961,"OS04G0543900","GDH2",1012.2973608088,989.086668582,1376.80560434638,1520.28534964813,"up","OS04G0543900","Glutamate dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q33E23]","Similar to glutamic dehydrogenase1. (Os04t0543900-01);Similar to Glutamate dehydrogenase 2. (Os04t0543900-02)",4,27233362,27238105,"GO:0009409;GO:0016639;GO:0006520;GO:0005739;GO:0055114;GO:0016491;GO:1901698;GO:0010446;GO:0006995;GO:0004353;GO:0009651","response to cold;oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor;cellular amino acid metabolic process;mitochondrion;oxidation-reduction process;oxidoreductase activity;response to nitrogen compound;response to alkaline pH;cellular response to nitrogen starvation;glutamate dehydrogenase [NAD(P)+] activity;response to salt stress","Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr];Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP. [GOC:ai];The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:0198506732];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. [GOC:pr, GOC:TermGenie];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH > 7. pH is a measure of the acidity or basicity of an aqueous solution. [GOC:go_curators, GOC:tb, http://en.wikipedia.org/wiki/PH];Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl];Catalysis of the reaction: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H + H+. [EC:1.4.1.3];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]"]
["OS06T0718400-00",6.87978206930566E-4,0.0400364003393193,2.42069706085869,"OS06G0718400",null,108.241551918216,70.1653013131006,402.508613867545,552.734595073002,"up","OS06G0718400","Blue copper binding protein-like [Source:UniProtKB/TrEMBL;Acc:Q5Z8N5]","Hypothetical conserved gene. (Os06t0718400-00)",6,30528045,30529070,"GO:0046658;GO:0009055;GO:0016020;GO:0016021","anchored component of plasma membrane;electron carrier activity;membrane;integral component of membrane","The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. [GOC:dos, GOC:mah];Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. [ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0390500-01",6.8966953671027709E-4,0.0400585241170578,0.7808631753862381,"OS10G0390500",null,1149.22377596318,1073.48990941559,1759.81727976668,2059.15724898212,"up","OS10G0390500","Os10g0390500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XUE4]","Alanine aminotransferase, Starch synthesis in developing seeds (Os10t0390500-01)",10,12967859,12974077,"GO:0030170;GO:0009058;GO:0003824","pyridoxal phosphate binding;biosynthetic process;catalytic activity","Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. [GOC:curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732]"]
["OS03T0724700-02",0.000695365230042383,0.0403127106418499,0.843923239905482,"OS03G0724700",null,319.374655256703,278.655400167979,548.625730521059,524.793126279102,"up","OS03G0724700","Maf-like protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10DP6]","Similar to cDNA clone:002-104-C06, full insert sequence. (Os03t0724700-01);Similar to cDNA clone:002-144-A12, full insert sequence. (Os03t0724700-02);Maf-like protein family protein. (Os03t0724700-03)",3,29454977,29457859,"GO:0047429","nucleoside-triphosphate diphosphatase activity","Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide. [EC:3.6.1.19, MetaCyc:3.6.1.19-RXN]"]
["OS09T0536700-01",7.2275559772292308E-4,0.0415849887413008,1.36642770958297,"OS09G0536700",null,171.212498666708,136.575183106638,431.509149104935,362.063994925681,"up","OS09G0536700","Os09g0536700 protein [Source:UniProtKB/TrEMBL;Acc:Q69JG4]","Similar to predicted protein. (Os09t0536700-01);Nodulin-like domain containing protein. (Os09t0536700-02)",9,21110946,21114330,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0123700-01",7.2803291476421206E-4,0.0418098902478876,1.38550650504077,"OS02G0123700","GLU14",55.0397116490123,59.730894452472,154.961620534292,144.892272950372,"up","OS02G0123700","Endoglucanase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z715]","Similar to CEL5=CELLULASE 5 (Fragment). (Os02t0123700-01)",2,1237099,1240160,"GO:0030245;GO:0000272;GO:0008810;GO:0008152;GO:0016798;GO:0005975;GO:0004553;GO:0016787;GO:0005576;GO:0003824;GO:0071555","cellulose catabolic process;polysaccharide catabolic process;cellulase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;carbohydrate metabolic process;hydrolase activity, hydrolyzing O-glycosyl compounds;hydrolase activity;extracellular region;catalytic activity;cell wall organization","The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators];Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. [EC:3.2.1.4];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]"]
["OS08T0103000-01",0.000740478774330299,0.042207290136827,0.8916496219916321,"OS08G0103000",null,285.333790349699,260.736395147598,548.830250633839,464.291751930324,"up","OS08G0103000","Os08g0103000 protein [Source:UniProtKB/TrEMBL;Acc:A0A0N7KP48]","Similar to serine/threonine-protein kinase CTR1. (Os08t0103000-01);Similar to serine/threonine-protein kinase CTR1. (Os08t0103000-02)",8,172099,179389,"GO:0004871;GO:0005829;GO:0035556;GO:0004674;GO:0016310;GO:0016301;GO:0006468;GO:0005524;GO:0004672","signal transducer activity;cytosol;intracellular signal transduction;protein serine/threonine kinase activity;phosphorylation;kinase activity;protein phosphorylation;ATP binding;protein kinase activity","Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. [GOC:go_curators];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS01T0689451-01",7.4463703005276207E-4,0.0423476021686503,"Inf","OS01G0689451",null,0,0,124.477883763008,42.2078001435043,"up","OS01G0689451","Hemerythrin motif-containing really interesting new gene (RING)-and zinc-finger protein 1 [Source:UniProtKB/TrEMBL;Acc:V9G2Z0]","Similar to predicted protein. (Os01t0689451-01);Similar to predicted protein. (Os01t0689451-02)",1,28447888,28458988,"GO:0008270","zinc ion binding","Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS07T0685000-02",0.000746546698889693,0.0423476021686503,0.45497257354819104,"OS07G0685000",null,1402.49339313039,1324.56152965045,1847.98539641876,1890.14353533569,"up","OS07G0685000","AOBP-like protein [Source:UniProtKB/TrEMBL;Acc:Q84PD2]","Similar to Dof3 gene (Fragment). (Os07t0685000-02)",7,29077209,29081176,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS12T0568200-01",0.000751060778581532,0.0424148038950517,1.32493451267744,"OS12G0568200","MT4B",1342.64450508757,1617.94239329259,3281.07482871393,4135.83234289099,"up","OS12G0568200","Metallothionein-like protein 4B [Source:UniProtKB/Swiss-Prot;Acc:Q2QNE8]","Metallothionein-like protein type 1. (Os12t0568200-01)",12,23383189,23384177,"GO:0046872","metal ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai]"]
["OS02T0571300-01",7.5440230627487411E-4,0.0424980568946463,3.99954319309663,"OS02G0571300","KSL5",3.05776175827846,8.23464210728365,84.8863408069861,95.7349210787682,"up","OS02G0571300","Ent-pimara-8(14),15-diene synthase [Source:UniProtKB/Swiss-Prot;Acc:Q6Z5J6]","Terpenoid synthase domain containing protein. (Os02t0571300-01)",2,21853581,21863592,"GO:0006952;GO:0016829;GO:0010333;GO:0000287;GO:0046872;GO:0008152;GO:0034282","defense response;lyase activity;terpene synthase activity;magnesium ion binding;metal ion binding;metabolic process;ent-pimara-8(14),15-diene synthase activity","Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators];Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, ISBN:0198547684];Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators];Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the reaction: ent-copalyl diphosphate = ent-pimara-8(14),15-diene + diphosphate. [RHEA:25543]"]
["OS03T0126825-01",0.000756461359003667,0.0424980568946463,1.02651749696422,"OS03G0126825",null,823.321657823996,974.048179256587,1685.38915449876,1976.03470167039,"up","OS03G0126825","Os03g0126825 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VSK8]","Hypothetical gene. (Os03t0126825-01)",3,1514817,1519042]
["OS10T0530900-01",0.000756708004408471,0.0424980568946463,2.4137898979309202,"OS10G0530900","GSTU6",203.257465033852,163.335577501147,742.365712530909,1211.10714297449,"up","OS10G0530900","Probable glutathione S-transferase GSTU6 [Source:UniProtKB/Swiss-Prot;Acc:Q06398]","Similar to Glutathione S-transferase GST 30 (EC 2.5.1.18). (Os10t0530900-01);Similar to cDNA clone:006-203-F02, full insert sequence. (Os10t0530900-03)",10,20633891,20634928,"GO:0004364;GO:0005737;GO:0016740;GO:0006749;GO:0009407","glutathione transferase activity;cytoplasm;transferase activity;glutathione metabolic process;toxin catabolic process","Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group. [EC:2.5.1.18];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732];The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. [GOC:go_curators]"]
["OS03T0391700-01",7.6382610444982108E-4,0.0426625505359249,0.40603868385205105,"OS03G0391700",null,3378.8267428977,3482.22428111757,4612.15785051291,4479.02666475666,"up","OS03G0391700","Os03g0391700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VZ61]","Helix-loop-helix DNA-binding domain containing protein. (Os03t0391700-01)",3,15685589,15689245,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS02T0810450-01",0.000767786554661494,0.042727531544659296,0.5976055950732191,"OS02G0810450",null,535.108307698731,545.545039607542,856.669048603837,778.578898977329,"up","OS02G0810450","Os02g0810450 protein [Source:UniProtKB/TrEMBL;Acc:B9F460]","Similar to endoribonuclease. (Os02t0810450-01)",2,34649425,34653705,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0379300-02",7.750375372607821E-4,0.0429744951694944,2.80337835652782,"OS03G0379300",null,502.818710469216,582.647759705321,2678.29053878562,4899.06014766071,"up","OS03G0379300","Helix-loop-helix DNA-binding domain containing protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q10KL8]","Helix-loop-helix DNA-binding domain containing protein. (Os03t0379300-01);Helix-loop-helix DNA-binding domain containing protein. (Os03t0379300-02)",3,15000100,15002140,"GO:0046983;GO:0003677","protein dimerization activity;DNA binding","The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw]"]
["OS01T0953000-01",7.8623159674824107E-4,0.0432067118615054,1.95285997249608,"OS01G0953000",null,42.9922366204023,37.319702248084,128.615049581637,182.305580907432,"up","OS01G0953000","Os01g0953000 protein [Source:UniProtKB/TrEMBL;Acc:Q0JFY9]","Hypothetical protein. (Os01t0953000-01)",1,41981690,41984377]
["OS12T0132500-00",7.8618241322322708E-4,0.0432067118615054,3.8342388759085,"OS12G0132500",null,5.59342138860059,8.00426394956394,69.1184245228046,124.829840617179,"up","OS12G0132500","Os12g0132500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y6P8]","Similar to Major facilitator superfamily antiporter. (Os12t0132500-00)",12,1567509,1572559,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0390701-00",7.9747306302928008E-4,0.0433530196115135,0.763188324157484,"OS10G0390701",null,5062.63421778971,4262.4566207827,7778.32079210682,8048.57157926501,"up","OS10G0390701","Os10g0390701 protein [Source:UniProtKB/TrEMBL;Acc:B9G5J8]","Conserved hypothetical protein. (Os10t0390701-00)",10,12983013,12983507]
["OS02T0816600-01",7.9973988112696907E-4,0.0433990281495402,1.33710543384295,"OS02G0816600",null,120.23225130062,137.088075990574,341.572802327679,308.53134716599,"up","OS02G0816600","Os02g0816600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DWG0]","Similar to ABC(yeast) homolog1. (Os02t0816600-01);Similar to ABC1 family protein. (Os02t0816600-02)",2,35004914,35006549,"GO:0006468;GO:0005524;GO:0004672","protein phosphorylation;ATP binding;protein kinase activity","The process of introducing a phosphate group on to a protein. [GOC:hb];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN]"]
["OS03T0405500-01",8.024223029456021E-4,0.0434673868787128,0.7386659529424461,"OS03G0405500",null,1022.17400096557,1090.73824749302,1626.4801847865,1899.19313619326,"up","OS03G0405500","Probable nucleoredoxin 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y0E8]","Similar to PDI-like protein. (Os03t0405500-01);Hypothetical conserved gene. (Os03t0405500-02)",3,16590192,16595911,"GO:0005623;GO:0045454;GO:0047134;GO:0004791;GO:0005737;GO:0055114;GO:0016491;GO:0098869","cell;cell redox homeostasis;protein-disulfide reductase activity;thioredoxin-disulfide reductase activity;cytoplasm;oxidation-reduction process;oxidoreductase activity;cellular oxidant detoxification","The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+. [EC:1.8.1.8, MetaCyc:1.6.4.4-RXN];Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. [EC:1.8.1.9, RHEA:20348];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide. [GOC:dos, GOC:vw]"]
["OS02T0120300-01",8.2018978356263907E-4,0.0440766175669592,1.37705300131504,"OS02G0120300",null,64.2160905596003,71.5670530065537,194.290765705181,158.388654361859,"up","OS02G0120300","Os02g0120300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YUS4]","Nicotinamide N-methyltransferase, putative domain containing protein. (Os02t0120300-01)",2,1067045,1069130]
["OS10T0195100-00",8.2332997877697107E-4,0.0440766175669592,0.812503023610546,"OS10G0195100",null,589.883480162549,696.706685863333,1122.72491921282,1136.85657502721,"up","OS10G0195100","Os10g0195100 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0XSD0]","Hypothetical conserved gene. (Os10t0195100-00)",10,6583644,6586293]
["OS03T0680800-05",8.299787810338501E-4,0.0440998067668887,0.46201767443738306,"OS03G0680800",null,1616.1920834558,1595.1081146969,2141.90921041136,2281.55058789831,"up","OS03G0680800","Associated with HOX family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q5KQP1]","Similar to cDNA clone:J023038C04, full insert sequence. (Os03t0680800-01);Similar to Prep (Fragment). (Os03t0680800-02);Similar to Associated with HOX family protein, expressed. (Os03t0680800-03);Similar to cDNA clone:J023038C04, full insert sequence. (Os03t0680800-04);Similar to cDNA clone:J023038C04, full insert sequence. (Os03t0680800-05)",3,27057033,27063684,"GO:0003677;GO:0005634;GO:0006355","DNA binding;nucleus;regulation of transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS03T0818200-01",0.000840740123167712,0.0444399519775432,0.753528859631948,"OS03G0818200",null,237.673281967955,243.669116759,405.045819359573,406.454896462752,"up","OS03G0818200","NAD dependent epimerase/dehydratase family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q84JG9]","NAD(P)-binding domain containing protein. (Os03t0818200-01)",3,34340287,34343211,"GO:0050662;GO:0003824;GO:0005829","coenzyme binding;catalytic activity;cytosol","Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:0198506732];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl]"]
["OS01T0897800-03",8.6888866561921107E-4,0.0456906824647128,7.80461096880854,"OS01G0897800",null,0.263550398316839,1.46425645331215,201.961839962321,184.331479879634,"up","OS01G0897800","Sister chromatid cohesion 1 protein 4 [Source:Projected from Arabidopsis thaliana (AT5G16270) UniProtKB/Swiss-Prot;Acc:Q8W1Y0]","Rad21/Rec8 like protein, C-terminal domain containing protein. (Os01t0897800-01);Similar to Rad21/Rec8-like protein. (Os01t0897800-02);Rad21/Rec8 like protein, C-terminal domain containing protein. (Os01t0897800-03);Similar to Rad21/Rec8-like protein. (Os01t0897800-04)",1,39025299,39035049,"GO:0000228;GO:0003682;GO:0006302;GO:0007062;GO:0000798;;GO:0070601","nuclear chromosome;chromatin binding;double-strand break repair;sister chromatid cohesion;nuclear cohesin complex;;centromeric sister chromatid cohesion","A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact. [GOC:dph, GOC:mah];Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. [GOC:jl, ISBN:0198506732, PMID:20404130];The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. [GOC:elh];The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other. [GOC:jh, GOC:mah, ISBN:0815316194];A cohesin complex required for cohesion between sister chromatids that remain in the nucleus. [GOC:elh];;The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the centromeric region of the chromosome. [GOC:mah]"]
["OS02T0509500-01",8.8434488671661606E-4,0.0458718250916232,0.7982888802958631,"OS02G0509500",null,515.742483229634,467.315939588347,787.393988864802,922.181280595481,"up","OS02G0509500","Os02g0509500 protein [Source:UniProtKB/TrEMBL;Acc:Q0E0Z7]","Protein of unknown function DUF3339 domain containing protein. (Os02t0509500-01)",2,18211500,18211991,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS10T0567400-01",0.00088240207968055,0.0458718250916232,2.71020735945519,"OS10G0567400","CAO",95.5927853945801,176.48548488947,984.689168132844,795.833747975624,"up","OS10G0567400","Chlorophyllide a oxygenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S7E1]","Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-03)",10,22482882,22486431,"GO:0010277;GO:0051537;GO:0016705;GO:0005506;GO:0016491;GO:0055114;GO:0031969;GO:0051536;GO:0015995;GO:0009579;GO:0009536;GO:0009535;GO:0009507;GO:0046872;GO:0016020","chlorophyllide a oxygenase [overall] activity;2 iron, 2 sulfur cluster binding;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;oxidoreductase activity;oxidation-reduction process;chloroplast membrane;iron-sulfur cluster binding;chlorophyll biosynthetic process;thylakoid;plastid;chloroplast thylakoid membrane;chloroplast;metal ion binding;membrane","Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+; and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+. [EC:1.13.12.14, MetaCyc:RXN-7677];Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. [GOC:ai, PMID:15952888, Wikipedia:Iron-sulfur_cluster];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. [GOC:mah, GOC:pz];Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai];The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl];A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. [GOC:ds, GOC:mtg_sensu, ISBN:0198506732];Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. [GOC:jl, ISBN:0198547684];The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu];A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. [ISBN:0471245208];Interacting selectively and non-covalently with any metal ion. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS12T0197500-01",8.8357142515630707E-4,0.0458718250916232,0.672551951381126,"OS12G0197500","SGS3",565.568441184884,497.757607191597,839.28467940836,855.539939703407,"up","OS12G0197500","Protein SUPPRESSOR OF GENE SILENCING 3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q2QWE9]","Homolog of Arabidopsis suppressor of gene silencing 3, Cofactor of RNA-dependent RNA polymerase, Defense response to virus (Os12t0197500-01);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-02);Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog. (Os12t0197500-03)",12,5035198,5040887,"GO:0031047;GO:0005737;GO:0050688;GO:0005655","gene silencing by RNA;cytoplasm;regulation of defense response to virus;nucleolar ribonuclease P complex","Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. [GOC:ai];A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. [GOC:mah, PMID:12045094]"]
["OS01T0537250-01",0.000912647669226431,0.0461378551722512,1.5855880820813,"OS01G0537250",null,39.8476628723587,54.7261744621089,151.485394292336,132.359171698022,"up","OS01G0537250","Os01g0537250 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V3N0]","Protein of unknown function DUF3778 domain containing protein. (Os01t0537250-01)",1,19549155,19550345,"GO:0016020;GO:0016021","membrane;integral component of membrane","A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS01T0623500-01",0.000906884571706172,0.0461378551722512,0.511711869961552,"OS01G0623500",null,633.341104132381,638.745542789286,896.369172133858,917.296845846565,"up","OS01G0623500","Cell division cycle gene CDC48-like [Source:UniProtKB/TrEMBL;Acc:Q9AX97]","ATPase, AAA-type, core domain containing protein. (Os01t0623500-01)",1,24894706,24899506,"GO:0016887;GO:0051301;GO:0005634;GO:0005524","ATPase activity;cell division;nucleus;ATP binding","Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. [GOC:di, GOC:go_curators, GOC:pr];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732]"]
["OS01T0630900-00",9.1587527180304407E-4,0.0461378551722512,"Inf","OS01G0630900",null,0,0,33.8037683581396,34.3884717596225,"up","OS01G0630900","Os01g0630900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5L2]","Hypothetical conserved gene. (Os01t0630900-00)",1,25219700,25221448,"GO:0006355","regulation of transcription, DNA-templated","Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH]"]
["OS01T0646700-02",9.0808591955522807E-4,0.0461378551722512,0.6980301009336211,"OS01G0646700",null,823.195791623082,746.707692210768,1351.37579971138,1195.46003262321,"up","OS01G0646700","Os01g0646700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0V5T8]","Similar to OSIGBa0105P02.4 protein. (Os01t0646700-01);Similar to OSIGBa0105P02.4 protein. (Os01t0646700-02);Hypothetical conserved gene. (Os01t0646700-03)",1,26060892,26064410,"GO:0000723;GO:0003678;GO:0032508;GO:0004386;GO:0006281","telomere maintenance;DNA helicase activity;DNA duplex unwinding;helicase activity;DNA repair","Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. [GOC:BHF, GOC:BHF_telomere, GOC:elh, GOC:rl, PMID:11092831];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. [GOC:jl, GOC:mah];The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands. [GOC:isa_complete, GOC:mah];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]"]
["OS04T0381600-00",0.000902843575556664,0.0461378551722512,0.6688346310758081,"OS04G0381600",null,374.066188429399,423.054738261697,615.669897117336,651.583595505494,"up","OS04G0381600","Os04g0381600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0W9L9]","GTPase EngC family protein. (Os04t0381600-00)",4,18702259,18707741,"GO:0005525;GO:0003924","GTP binding;GTPase activity","Interacting selectively and non-covalently with GTP, guanosine triphosphate. [GOC:ai];Catalysis of the reaction: GTP + H2O = GDP + phosphate. [ISBN:0198547684]"]
["OS05T0587300-01",8.985219341877121E-4,0.0461378551722512,0.45835480475202206,"OS05G0587300",null,1289.0147688619,1205.85127184064,1677.40459002629,1750.47672279145,"up","OS05G0587300","'unknow protein, contains tetratricopeptide (TPR) domain [Source:UniProtKB/TrEMBL;Acc:Q6L5C2]","Molecular chaperone, heat shock protein, Hsp40, DnaJ domain containing protein. (Os05t0587300-01);Hypothetical gene. (Os05t0587300-02)",5,29257808,29262204,"GO:0005623;GO:0045454","cell;cell redox homeostasis","The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]"]
["OS05T0366600-01",0.000921355707812441,0.0462981243175752,1.23069940308979,"OS05G0366600","BGLU22",118.233454653434,88.5224026532992,244.901971753489,240.314189646704,"up","OS05G0366600","Beta-glucosidase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q60DX8]","Similar to Hydroxyisourate hydrolase. (Os05t0366600-01)",5,17594979,17600507,"GO:1901657;GO:0102483;GO:0008422;GO:0008152;GO:0016798;GO:0004553;GO:0005975;GO:0016787","glycosyl compound metabolic process;scopolin beta-glucosidase activity;beta-glucosidase activity;metabolic process;hydrolase activity, acting on glycosyl bonds;hydrolase activity, hydrolyzing O-glycosyl compounds;carbohydrate metabolic process;hydrolase activity","The chemical reactions and pathways involving glycosyl compound. [GOC:pr, GOC:TermGenie];Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin [EC:3.2.1.21];Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. [EC:3.2.1.21];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of the hydrolysis of any glycosyl bond. [GOC:jl];Catalysis of the hydrolysis of any O-glycosyl bond. [GOC:mah];The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:0198506732];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732]"]
["OS06T0125400-00",0.000925646577355911,0.0463697498851309,1.01202635865597,"OS06G0125400",null,587.195130999647,539.495059955999,1010.42368678157,1261.81946760586,"up","OS06G0125400","Os06g0125400 protein [Source:UniProtKB/TrEMBL;Acc:Q5VS43]","Similar to Oligopeptide transporter 9. (Os06t0125400-00)",6,1365218,1368983,"GO:0005887;GO:0035672;GO:0035673;GO:0055085;GO:0016020;GO:0016021","integral component of plasma membrane;oligopeptide transmembrane transport;oligopeptide transmembrane transporter activity;transmembrane transport;membrane;integral component of membrane","The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The directed movement of an oligopeptide across a membrane by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [GOC:vw, ISBN:0198506732];Enables the transfer of oligopeptides from one side of the membrane to the other. [GOC:vw];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS06T0570100-01",0.000926264589893983,0.0463697498851309,0.5246700308958451,"OS06G0570100","CYP701A6",844.179545739925,844.118887739257,1148.85282626917,1279.94091241979,"up","OS06G0570100","Ent-kaurene oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5Z5R4]","Ent-kaurene oxidase (EC 1.14.13.78) (AtKO1) (Cytochrome P450 701A3). (Os06t0570100-01)",6,22073976,22082485,"GO:0009686;GO:0009707;GO:0005783;GO:0010241;GO:0009740;GO:0004497;GO:0055114;GO:0046872;GO:0016491;GO:0016705;GO:0005506;GO:0020037;GO:0016020;GO:0016021;GO:0052615;GO:0052616;GO:0052617","gibberellin biosynthetic process;chloroplast outer membrane;endoplasmic reticulum;ent-kaurene oxidation to kaurenoic acid;gibberellic acid mediated signaling pathway;monooxygenase activity;oxidation-reduction process;metal ion binding;oxidoreductase activity;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;iron ion binding;heme binding;membrane;integral component of membrane;ent-kaurene oxidase activity;ent-kaur-16-en-19-ol oxidase activity;ent-kaur-16-en-19-al oxidase activity","The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [ISBN:0387969845];The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope. [GOC:tb];The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). [ISBN:0198506732];The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase. [EC:1.14.13.78, GOC:tb];A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm];Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. [http://www.onelook.com/, ISBN:0198506732];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. [GOC:mah];Interacting selectively and non-covalently with iron (Fe) ions. [GOC:ai];Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [CHEBI:30413, GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: H+ + NADPH + ent-kaur-16-ene + oxygen = H2O + NADP+ + ent-kaur-16-en-19-ol. [MetaCyc:1.14.13.78-RXN];Catalysis of the reaction: H+ + NADPH + ent-kaur-16-en-19-ol + oxygen = 2 H2O + NADP+ + ent-kaur-16-en-19-al. [MetaCyc:RXN-5242];Catalysis of the reaction: NADPH + ent-kaur-16-en-19-al + oxygen = H2O + NADP+ + ent-kaurenoate. [MetaCyc:RXN-7580]"]
["OS02T0528900-01",0.000950622599451645,0.0466378598334469,1.5402552625495,"OS02G0528900",null,210.985561321214,146.164897404285,536.637786710832,502.119892188641,"up","OS02G0528900","Os02g0528900 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VJX8]","Similar to PDR-like ABC transporter. (Os02t0528900-01)",2,19406608,19420786,"GO:0042626;GO:0016021;GO:0005886;GO:0055085;GO:0006810;GO:0016887;GO:0005524;GO:0000166;GO:0016020","ATPase activity, coupled to transmembrane movement of substances;integral component of membrane;plasma membrane;transmembrane transport;transport;ATPase activity;ATP binding;nucleotide binding;membrane","Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. [EC:3.6.1.3, GOC:jl];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. [ISBN:0716731363];The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other [GOC:dph, GOC:jid];The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. [GOC:dos, GOC:dph, GOC:jl, GOC:mah];Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. [EC:3.6.1.3, GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194]"]
["OS02T0562300-01",0.000943017789358386,0.0466378598334469,0.49953793525979606,"OS02G0562300",null,1105.30670863034,1009.31482693522,1495.90782819733,1493.66097761189,"up","OS02G0562300","Os02g0562300 protein [Source:UniProtKB/TrEMBL;Acc:Q6YU05]","Calmodulin binding protein-like family protein. (Os02t0562300-01);Hypothetical conserved gene. (Os02t0562300-02)",2,21319944,21325117,"GO:0005516;GO:0006950","calmodulin binding;response to stress","Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. [GOC:krc];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]"]
["OS03T0265600-01",9.5237677207935607E-4,0.0466378598334469,0.5417293773038211,"OS03G0265600",null,630.918176124789,687.592615958185,975.705066746967,943.672793490715,"up","OS03G0265600","Os03g0265600 protein [Source:UniProtKB/TrEMBL;Acc:Q0DT74]","Similar to Transformer-2-like protein. (Os03t0265600-01)",3,8767643,8770548,"GO:0003723;GO:0030529;GO:0003676;GO:0019013","RNA binding;intracellular ribonucleoprotein complex;nucleic acid binding;viral nucleocapsid","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];An intracellular macromolecular complex containing both protein and RNA molecules. [GOC:krc, GOC:vesicles];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. [ISBN:0781702534]"]
["OS05T0102800-04",9.4001490857964108E-4,0.0466378598334469,0.639613240639308,"OS05G0102800","ML3",1102.7607280386,1233.4305687287,1726.21666793369,1913.36251816365,"up","OS05G0102800","Protein MEI2-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q75M35]","Similar to AML1. (Os05t0102800-01);Similar to AML1. (Os05t0102800-02);Similar to AML1. (Os05t0102800-03);Similar to AML6. (Os05t0102800-04)",5,160715,167722,"GO:0003723;GO:0003676","RNA binding;nucleic acid binding","Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl]"]
["OS05T0497600-01",9.4259343752222909E-4,0.0466378598334469,0.513655013562358,"OS05G0497600",null,974.406746971403,886.039740031845,1362.94980827225,1293.13996209127,"up","OS05G0497600","Os05g0497600 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WPB2]","Arsenic-induced RING E3 ligase, Abiotic stress response (Os05t0497600-01)",5,24473136,24478871,"GO:0008276;GO:0006479","protein methyltransferase activity;protein methylation","Catalysis of the transfer of a methyl group (CH3-) to a protein. [GOC:jl, ISBN:0198506732];The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom. [GOC:ai]"]
["OS07T0563350-01",9.5254073501148406E-4,0.0466378598334469,0.42531615118138805,"OS07G0563350",null,1785.73286683462,1762.2134109587,2302.66395752284,2461.75511345404,"up","OS07G0563350",null,"NA",7,22537954,22542649,"GO:0046872;GO:0003677;GO:0005634;GO:0006355;GO:0006351;GO:0003676;GO:0008270","metal ion binding;DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;nucleic acid binding;zinc ion binding","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai]"]
["OS09T0455300-01",0.000934362471260544,0.0466378598334469,1.89529032487185,"OS09G0455300",null,19.3658244690969,23.6745960584405,82.9349306734922,77.1740690328846,"up","OS09G0455300","Basic helix-loop-helix (BHLH)-like protein [Source:UniProtKB/TrEMBL;Acc:Q67TR8]","Similar to INDEHISCENT protein. (Os09t0455300-01)",9,17132211,17133470,"GO:0005634;GO:0046983","nucleus;protein dimerization activity","A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. [ISBN:0198506732]"]
["OS11T0600700-02",9.4684467883514507E-4,0.0466378598334469,0.43461050907562604,"OS11G0600700",null,1945.94348948547,1947.0679445038,2552.18769011882,2709.39595522412,"up","OS11G0600700","Os11g0600700 protein [Source:UniProtKB/TrEMBL;Acc:Q2R1L5]","Similar to RING domain protein. (Os11t0600700-01);Similar to RING domain protein. (Os11t0600700-02)",11,23065978,23072515,"GO:0046872;GO:0008270;GO:0016020;GO:0016021","metal ion binding;zinc ion binding;membrane;integral component of membrane","Interacting selectively and non-covalently with any metal ion. [GOC:ai];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS12T0190000-01",0.000950569588194934,0.0466378598334469,0.5353885036632761,"OS12G0190000",null,1060.47336949262,972.386520563725,1449.51187101098,1496.77781817183,"up","OS12G0190000","Os12g0190000 protein [Source:UniProtKB/TrEMBL;Acc:Q2QWM9]","Similar to VTC2. (Os12t0190000-01);Similar to VTC2. (Os12t0190000-02)",12,4533049,4537221,"GO:0005737;GO:0080048;GO:0006006","cytoplasm;GDP-D-glucose phosphorylase activity;glucose metabolic process","All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the reaction: GDP-D-glucose + phosphate = D-glucose-1-P + GDP. [PMID:18463094];The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:0198506732]"]
["OS12T0260500-01",0.000976113286320865,0.0475633383152712,1.87280867091978,"OS12G0260500",null,831.982171028561,808.268006749117,2353.39336390621,3653.93926331841,"up","OS12G0260500","Os12g0260500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0Y8Z9]","Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os12t0260500-01)",12,9124141,9125439]
["OS03T0851900-02",0.000994274051057455,0.0482586630554266,0.46597384879367904,"OS03G0851900",null,999.329448840942,1036.00438892187,1416.90568727922,1394.39797632808,"up","OS03G0851900","AFG1-like ATPase family protein, putative, expressed [Source:UniProtKB/TrEMBL;Acc:Q10AH7]","ATPase, AFG1-like domain containing protein. (Os03t0851900-01);Similar to ATPase. (Os03t0851900-02)",3,35868698,35875491,"GO:0005524;GO:0019538;GO:0016818;GO:0016746;GO:0008026;GO:0006260;GO:0050660;GO:0030163;GO:0005623;GO:0045454;GO:0090305;GO:0006139;GO:0008408;GO:0055114;GO:0016491;GO:0003676;GO:0008375;GO:0008152;GO:0003824;GO:0016020;GO:0016021;GO:0004148","ATP binding;protein metabolic process;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;transferase activity, transferring acyl groups;ATP-dependent helicase activity;DNA replication;flavin adenine dinucleotide binding;protein catabolic process;cell;cell redox homeostasis;nucleic acid phosphodiester bond hydrolysis;nucleobase-containing compound metabolic process;3'-5' exonuclease activity;oxidation-reduction process;oxidoreductase activity;nucleic acid binding;acetylglucosaminyltransferase activity;metabolic process;catalytic activity;membrane;integral component of membrane;dihydrolipoyl dehydrogenase activity","Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma];Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. [GOC:jl];Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). [GOC:jl, ISBN:0198506732];Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. [EC:3.6.1.3, GOC:jl];The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah];Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. [CHEBI:24040, GOC:ai, GOC:imk, ISBN:0198506732];The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah];The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:go_curators];Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:ai];Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. [GOC:ai];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to a sugar. [ISBN:0198506732];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+. [EC:1.8.1.4]"]
["OS07T0188800-01",0.000999374503260763,0.0483115345310488,0.7780557019977931,"OS07G0188800",null,1780.17818279089,1691.59958888094,2710.57683129171,3242.89115768227,"up","OS07G0188800","Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Source:Projected from Arabidopsis thaliana (AT2G14170) UniProtKB/Swiss-Prot;Acc:Q0WM29]","Similar to Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27). (Os07t0188800-01);Similar to Methylmalonate semi-aldehyde dehydrogenase. (Os07t0188800-02)",7,4734626,4741454,"GO:0004491;GO:0016491;GO:0055114;GO:0008152;GO:0005507;GO:0006979;GO:0005739","methylmalonate-semialdehyde dehydrogenase (acylating) activity;oxidoreductase activity;oxidation-reduction process;metabolic process;copper ion binding;response to oxidative stress;mitochondrion","Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+. [EC:1.2.1.27];Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [GOC:go_curators];A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph];The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. [GOC:go_curators, ISBN:0198547684];Interacting selectively and non-covalently with copper (Cu) ions. [GOC:ai];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731];A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. [GOC:giardia, ISBN:0198506732]"]
["OS02T0790500-01",0.0010180665869552,0.048828838877009596,1.16205508915869,"OS02G0790500",null,134.006510146507,146.918402921087,304.246340785321,324.396094092274,"up","OS02G0790500","Os02g0790500 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VQK2]","Hypothetical protein. (Os02t0790500-01);Similar to Trehalose-6-phosphate synthase. (Os02t0790500-02);Similar to trehalose-6-phosphate synthase. (Os02t0790500-03)",2,33569391,33573165,"GO:0005992;GO:0003824;GO:0070413;GO:0016791;GO:0005737;GO:0016311;","trehalose biosynthetic process;catalytic activity;trehalose metabolism in response to stress;phosphatase activity;cytoplasm;dephosphorylation;","The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:0028623819];Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. [GOC:vw, ISBN:0198506732];The chemical reactions and pathways involving trehalose that occur as a result of a stimulus indicating the organism is under stress. [GOC:jp, GOC:mah, PMID:9797333];Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:0198506732];"]
["OS07T0495100-01",0.00102248286344979,0.0489637875299655,0.385405265155606,"OS07G0495100",null,3425.7124231913,3254.74229290386,4315.54351022183,4410.64457827182,"up","OS07G0495100","Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:Q84RS4]","Protein kinase beta subunit (regulatory subunit), Regulation of phosphate transporters (Os07t0495100-01)",7,18519391,18523619,"GO:0005956;GO:0045859;GO:0019887;GO:0016310;GO:0016301","protein kinase CK2 complex;regulation of protein kinase activity;protein kinase regulator activity;phosphorylation;kinase activity","A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein. [GOC:mah, PMID:10994779];Any process that modulates the frequency, rate or extent of protein kinase activity. [GOC:go_curators];Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein. [GOC:ai];The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732]"]
["OS02T0159200-02",1.0251062024287999E-3,0.0490125895095533,0.9693827877861291,"OS02G0159200",null,879.118821886289,1086.79261392023,1823.23578237454,2026.02420608981,"up","OS02G0159200","Os02g0159200 protein [Source:UniProtKB/TrEMBL;Acc:Q6ETI1]","Protein of unknown function DUF292, eukaryotic domain containing protein. (Os02t0159200-01);Hypothetical conserved gene. (Os02t0159200-02)",2,3212392,3216619,"GO:0015031","protein transport","The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]"]
["OS11T0586200-00",0.00105211306402902,0.049775944698163,2.14581535838064,"OS11G0586200",null,35.6738871799154,60.7304855412169,222.460755218308,204.16937250472,"up","OS11G0586200","NA","Similar to Calmodulin. (Os11t0586200-00)","NA","NA","NA","NA","NA","NA"]
["OS07T0429700-01",1.04889602878521E-3,0.049775944698163,1.2583305821203,"OS07G0429700",null,36152.514420197,31833.7531268202,70137.7598356627,92498.151906858,"up","OS07G0429700","Os07g0429700 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZL66]","Similar to Thionin-like peptide. (Os07t0429700-01)",7,14118026,14118911]
["OS06T0350700-01",1.0548541772757401E-3,0.0498112903000441,1.5617526764543,"OS06G0350700",null,47.5067439529808,47.2630400873835,117.243181116797,162.52884780467,"up","OS06G0350700","Os06g0350700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0WWP0]","Similar to OSIGBa0109M01.4 protein. (Os06t0350700-01)",6,14221117,14227611,"GO:0015074;GO:0004190;GO:0006508;GO:0003676;GO:0008270;GO:0016020;GO:0016021","DNA integration;aspartic-type endopeptidase activity;proteolysis;nucleic acid binding;zinc ion binding;membrane;integral component of membrane","The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah];Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. [ISBN:0198506732];The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with zinc (Zn) ions. [GOC:ai];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators]"]
["OS02T0215700-01",0.00107059210109829,0.0499988345403692,1.69911735363769,"OS02G0215700",null,29.6841936737074,37.6168854280476,118.798512059025,99.7296018070525,"up","OS02G0215700","Os02g0215700 protein [Source:UniProtKB/TrEMBL;Acc:A0A0P0VGF4]","Protein kinase, catalytic domain domain containing protein. (Os02t0215700-01)",2,6476685,6480097,"GO:0016310;GO:0016301;GO:0005524;GO:0004674;GO:0000166;GO:0006468;GO:0004672;GO:0016020;GO:0016021;GO:0016740","phosphorylation;kinase activity;ATP binding;protein serine/threonine kinase activity;nucleotide binding;protein phosphorylation;protein kinase activity;membrane;integral component of membrane;transferase activity","The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:0198506732];Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [ISBN:0198506732];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. [GOC:bf];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684];The process of introducing a phosphate group on to a protein. [GOC:hb];Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. [MetaCyc:PROTEIN-KINASE-RXN];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [ISBN:0198506732]"]
["OS02T0557800-02",0.00107201352905327,0.0499988345403692,0.46576317840749,"OS02G0557800","RR2",1690.81384238538,1880.50534162386,2509.55952797557,2422.60271523044,"up","OS02G0557800","Two-component response regulator ORR2 [Source:UniProtKB/Swiss-Prot;Acc:Q6YVX7]","A-type response regulator, Cytokinin signaling (Os02t0557800-01);A-type response regulator, Cytokinin signaling (Os02t0557800-02)",2,21128650,21131368,"GO:0005829;GO:0009736;GO:0000160;GO:0005737;GO:0005622;GO:0005634;GO:0006355;GO:0006351;GO:0016020;GO:0016021;GO:0009735","cytosol;cytokinin-activated signaling pathway;phosphorelay signal transduction system;cytoplasm;intracellular;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated;membrane;integral component of membrane;response to cytokinin","The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. [GOC:hjd, GOC:jl];A series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:sm, PMID:24080474];A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. [ISBN:0198506732];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH];A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. [GOC:dos, GOC:mah, ISBN:0815316194];The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. [GOC:dos, GOC:go_curators];Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl]"]
["OS03T0583900-02",1.07044096940544E-3,0.0499988345403692,14.4860107628174,"OS03G0583900","DCL2A",7.7419893027798605E-3,0.00912268666849331,211.694779648615,175.297016439727,"up","OS03G0583900","Endoribonuclease Dicer homolog 2a [Source:UniProtKB/Swiss-Prot;Acc:Q10HL3]","DEAD-like helicase, N-terminal domain containing protein. (Os03t0583900-01);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-02);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-03);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-04)",3,21500778,21515569,"GO:0016891;GO:0003723;GO:0090502;GO:0003676;GO:0005524;GO:0090501;GO:0004525;GO:0006396;GO:0016442;GO:0030422;GO:0005634;GO:0005737;GO:0004519;GO:0004518;GO:0031047;GO:0004386;GO:0090305;GO:0046872;GO:0016787;GO:0000166","endoribonuclease activity, producing 5'-phosphomonoesters;RNA binding;RNA phosphodiester bond hydrolysis, endonucleolytic;nucleic acid binding;ATP binding;RNA phosphodiester bond hydrolysis;ribonuclease III activity;RNA processing;RISC complex;production of siRNA involved in RNA interference;nucleus;cytoplasm;endonuclease activity;nuclease activity;gene silencing by RNA;helicase activity;nucleic acid phosphodiester bond hydrolysis;metal ion binding;hydrolase activity;nucleotide binding","Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. [GOC:ai];Interacting selectively and non-covalently with an RNA molecule or a portion thereof. [GOC:jl, GOC:mah];The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any nucleic acid. [GOC:jl];Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [ISBN:0198506732];The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. [PMID:11157775, PMID:15242644];Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah];A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation. [PMID:10749213, PMID:15145345];Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. [GOC:mah, PMID:11524674];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. [GOC:mah, ISBN:0198547684];Catalysis of the hydrolysis of ester linkages within nucleic acids. [ISBN:0198547684];Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054];Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. [GOC:mah, ISBN:0198506732];The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb];Interacting selectively and non-covalently with any metal ion. [GOC:ai];Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. [ISBN:0198506732];Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. [GOC:mah, ISBN:0198547684]"]
["OS08T0205400-01",0.0010659529070728,0.0499988345403692,1.12299061837385,"OS08G0205400",null,4848.59089471022,4617.57556165931,8936.48270633547,11680.6372585595,"up","OS08G0205400","Os08g0205400 protein [Source:UniProtKB/TrEMBL;Acc:Q6ZCF3]","Heavy metal transport/detoxification protein domain containing protein. (Os08t0205400-01)",8,6159123,6161383,"GO:0046916;GO:0030001;GO:0046914;GO:0005737;GO:0046872;GO:0000785","cellular transition metal ion homeostasis;metal ion transport;transition metal ion binding;cytoplasm;metal ion binding;chromatin","Any process involved in the maintenance of an internal steady state of transition metal ions at the level of a cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [GOC:mah, ISBN:0198506732];The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai];Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:0198506732];All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. [ISBN:0198547684];Interacting selectively and non-covalently with any metal ion. [GOC:ai];The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. [GOC:elh, PMID:20404130]"]
["OS08T0516600-01",1.07355444679504E-3,0.0499988345403692,0.469444446087225,"OS08G0516600",null,1125.25632704647,1249.60693978029,1631.37887160093,1656.80026683256,"up","OS08G0516600","Os08g0516600 protein [Source:UniProtKB/TrEMBL;Acc:Q7EZ85]","Conserved hypothetical protein. (Os08t0516600-01)",8,25628754,25629637]
["OS12T0586300-00",1.0682060629875901E-3,0.0499988345403692,1.01499296500634,"OS12G0586300",null,153.907341833349,121.460971082434,277.100238956139,279.389667638038,"up","OS12G0586300","Myb-like DNA-binding domain, SHAQKYF class family protein, expressed [Source:UniProtKB/TrEMBL;Acc:Q2QMY1]","Myb-like DNA-binding domain, SHAQKYF class domain containing protein. (Os12t0586300-00)",12,24475101,24477611,"GO:0003677;GO:0005634;GO:0006355;GO:0006351","DNA binding;nucleus;regulation of transcription, DNA-templated;transcription, DNA-templated","Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). [GOC:dph, GOC:jl, GOC:tb, GOC:vw];A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. [GOC:go_curators];Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. [GOC:go_curators, GOC:txnOH];The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]"]