Altered non-coding RNA expression profile in F1 progeny one year after parental irradiation is linked to adverse effects in zebrafish Leonardo Martín, Jorke H Kamstra, Selma Hurem, Leif C Lindeman, Dag A Brede, Håvard Aanes, Igor Babiak, Amilcar Arenal, Deborah Oughton, Brit Salbu, Jan Ludvig Lyche, Peter Aleström. Matched clusters represent any piRNA cluster in F1 control (F1-C) and F1 gamma group (F1-γ) for which their genomic coordinates overlap at least by 50 %. Coordinate values correspond to the consensus coordinate from three replicates in each experimental group. +/- indicates bidirectionality In clusters name, F1-C and F1-γ are represented by c and g respectively. matched clusters coordinate F1-C strand coordinate F1-γ strand Chromosome cluster 1c-2g 26910008-26915839 + 26909049-26917239 + chr1 cluster 3c-3g 27195031-27203295 - 27197184-27204030 - chr1 cluster 4c-4g 27205118-27213739 - 27205032-27214008 - chr1 cluster 5c-5g 27220238-27237268 +/- 27220236-27235820 +/- chr1 cluster 9c-8g 11970128-11978025 -/+ 11971213-11978025 - chr10 cluster 12c-10g 12014299-12034775 - 12275057-12281024 - chr10 cluster 13c-12g 15189937-15194076 + 15189146-15194836 + chr11 cluster 15c-14g 32411043-32417723 - 32411035-32417730 - chr11 cluster 16c-15g 12639431-12649491 - 12639301-12649467 - chr12 cluster 17c-16g 12855627-12861602 - 12855621-12861587 - chr12 cluster 19c-19g 15175068-15182001 - 15175044-15181991 - chr12 cluster 20c-20g 15200038-15210669 -/+ 15200008-15210787 + chr12 cluster 22c-23g 48553896-48563017 +/- 48553741-48563358 -/+ chr13 cluster 29c-29g 13018035-13027020 + 13018030-13027020 + chr14 cluster 32c-33g 15150399-15160009 -/+ 15150147-15161016 + chr14 cluster 34c-34g 15267187-15273691 - 15267592-15273836 - chr14 cluster 45c-45g 9602015-9614809 - 9602028-9615936 - chr16 cluster 46c-46g 9618019-9635641 - 9618052-9635182 - chr16 cluster 48c-48g 15827037-15836017 +/- 15827001-15836017 +/- chr16 cluster 55c-53g 6486847-6492977 - 6486003-6492975 - chr17 cluster 57c-54g 40698049-40706631 + 40698041-40706647 + chr17 cluster 58c-55g 40712229-40728017 + 40712229-40728001 + chr17 cluster 60c-56g 40756002-40765927 - 40756002-40766007 - chr17 cluster 62c-59g 40832090-40841025 - 40830019-40840981 - chr17 cluster 63c-60g 41874032-41880311 + 41874000-41879338 + chr17 cluster 64c-61g 48636209-48644824 - 48636114-48644268 - chr17 cluster 65c-62g 49443210-49466990 -/+ 49443208-49466739 -/+ chr17 cluster 66c-63g 49474168-49509396 - 49474286-49509859 - chr17 cluster 67c-64g 49606107-49612987 -/+ 49606108-49615026 -/+ chr17 cluster 68c-65g 28956000-28963806 -/+ 28956000-28962936 -/+ chr18 cluster 69c-66g 29683700-29689360 + 29681680-29689395 + chr18 cluster 70c-67g 29707041-29716023 - 29707017-29716020 - chr18 cluster 71c-68g 29723026-29744018 -/+ 29723025-29749018 -/+ chr18 cluster 76c-76g 32075008-32081999 - 32076010-32082022 +/- chr18 cluster 77c-77g 32091000-32098983 + 32091004-32100023 -/+ chr18 cluster 78c-78g 32319025-32329882 - 32319008-32330959 - chr18 cluster 81c-80g 32676225-32683467 - 32676227-32684932 - chr18 cluster 82c-81g 32750762-32758925 - 32750021-32758996 - chr18 cluster 85c-85g 33235012-33244709 -/+ 33235015-33244784 - chr18 cluster 86c-87g 33512010-33529994 +/- 33512130-33528971 +/- chr18 cluster 90c-91g 33814004-33823603 - 33814003-33823637 - chr18 cluster 91c-92g 33854050-33863921 + 33855139-33863997 + chr18 cluster 92c-93g 33867003-33877844 + 33867000-33877844 + chr18 cluster 93c-94g 33923367-33930614 - 33923350-33930998 - chr18 cluster 96c-97g 35022094-35034747 - 35022100-35035026 - chr18 cluster 97c-98g 37728019-37739990 - 37728065-37739986 - chr18 cluster 99c-99g 15089083-15095970 + 15085053-15094003 + chr19 cluster 100c-101g 16870009-16879025 - 16870012-16879026 - chr19 cluster 101c-102g 16952015-16967014 - 16952011-16967021 - chr19 cluster 102c-103g 17060011-17066684 - 17060005-17066792 - chr19 cluster 103c-104g 17080065-17088023 + 17080559-17088023 +/- chr19 cluster 104c-105g 17134196-17144027 -/+ 17134112-17144028 -/+ chr19 cluster 105c-106g 17210001-17218903 -/+ 17210066-17218905 - chr19 cluster 109c-111g 11547069-11554145 + 11547687-11555805 + chr2 cluster 110c-112g 13098002-13104014 - 13097018-13106009 -/+ chr2 cluster 112c-116g 15136114-15149945 - 15136110-15149945 - chr2 cluster 113c-117g 15152000-15216011 - 15152000-15216016 - chr2 cluster 117c-120g 6411188-6418856 -/+ 6412454-6418855 + chr20 cluster 119c-124g 47304038-47314000 -/+ 47305000-47314019 -/+ chr20 cluster 120c-125g 47341104-47346949 - 47339045-47347015 - chr20 cluster 121c-126g 30146527-30153953 - 30145014-30153912 - chr21 cluster 123c-127g 36646488-36651902 + 36644006-36653002 + chr21 cluster 124c-130g 24453486-24462551 - 24453112-24465958 - chr22 cluster 125c-131g 24800887-24807783 - 24799510-24807959 - chr22 cluster 126c-134g 31749044-31757765 - 31747276-31758376 - chr22 cluster 127c-135g 31769601-31780472 + 31769016-31780787 + chr22 cluster 128c-136g 31829018-31836940 + 31826273-31836935 + chr22 cluster 130c-139g 16268020-16278003 - 16266341-16277989 - chr23 cluster 131c-140g 16476598-16485025 - 16476544-16486028 - chr23 cluster 132c-141g 6053210-6059513 - 6053212-6059888 - chr24 cluster 135c-144g 37253912-37261027 - 37253938-37261996 - chr24 cluster 136c-145g 10067092-10077003 -/+ 10068008-10077024 -/+ chr25 cluster 139c-147g 25801015-25809024 + 25800149-25809023 + chr25 cluster 141c-148g 27226301-27247590 -/+ 27226196-27247590 -/+ chr25 cluster 142c-151g 3182736-3192824 -/+ 3181746-3193009 -/+ chr3 cluster 143c-153g 6286097-6291978 - 6285828-6291930 - chr3 cluster 147c-158g 49705003-49716020 -/+ 49705021-49717024 -/+ chr3 cluster 148c-159g 28762004-28772861 +/- 28764005-28772967 +/- chr4 cluster 149c-160g 28792171-28801883 + 28792186-28801869 + chr4 cluster 151c-162g 28990006-28999652 - 28990003-28999983 - chr4 cluster 152c-163g 29025154-29033695 -/+ 29025042-29033908 -/+ chr4 cluster 154c-165g 29105177-29114962 +/- 29105175-29116821 +/- chr4 cluster 155c-166g 29248024-29257004 - 29248017-29257023 - chr4 cluster 156c-167g 29261064-29275380 +/- 29261065-29272007 +/- chr4 cluster 157c-168g 29530592-29553008 +/- 29530592-29551982 +/- chr4 cluster 158c-169g 29585390-29592028 + 29584728-29592019 + chr4 cluster 159c-170g 29601046-29605599 - 29598133-29605596 - chr4 cluster160c-171g 29969095-29976178 - 29969103-29977654 - chr4 cluster 161c-172g 30062341-30081024 -/+ 30060012-30080003 -/+ chr4 cluster 164c-174g 33233000-33250023 - 33233000-33250023 - chr4 cluster 166c-176g 34309091-34317010 - 34308030-34318001 - chr4 cluster 169c-184g 41879032-41883796 + 41876910-41883921 + chr4 cluster 170c-185g 42141997-42153821 + 42140426-42153840 + chr4 cluster 171c-186g 42405008-42417014 - 42405002-42416999 - chr4 cluster 173c-188g 43504105-43521998 - 43504126-43520443 - chr4 cluster 175c-190g 44714090-44723763 - 44715948-44723845 - chr4 cluster 176c-191g 44743368-44776019 - 44742209-44774933 - chr4 cluster 177c-192g 45264346-45272899 - 45264716-45272906 - chr4 cluster 178c-193g 45431099-45449941 - 45431203-45449731 - chr4 cluster 181c-195g 46800019-46807769 - 46796018-46808793 - chr4 cluster 184c-197g 48690027-48707018 + 48691084-48709930 + chr4 cluster 185c-198g 48805047-48812389 -/+ 48805056-48812939 -/+ chr4 cluster 186c-199g 48817606-48831904 - 48817494-48829997 - chr4 cluster 187c-200g 48833016-48839058 +/- 48833018-48839055 - chr4 cluster 188c-201g 48887515-48892970 - 48884071-48891875 - chr4 cluster 189c-203g 49120968-49134012 - 49120079-49134014 - chr4 cluster 190c-204g 49907014-49916021 + 49907014-49916896 + chr4 cluster 191c-207g 54395037-54404001 + 54395027-54404005 + chr4 cluster 192c-208g 54841332-54851011 + 54841332-54851011 + chr4 cluster 194c-211g 56094022-56102993 - 56094034-56102978 - chr4 cluster 197c-213g 59360129-59378891 - 59360128-59378957 - chr4 cluster 198c-215g 59660011-59669977 + 59661006-59666984 + chr4 cluster 199c-216g 59683338-59707955 + 59683338-59701013 + chr4 cluster 200c-217g 60922021-60935014 - 60922008-60934015 - chr4 cluster 204c-220g 61021076-61030888 - 61022050-61030796 - chr4 cluster 207c-221g 61494743-61504023 + 61494761-61504006 + chr4 cluster 210c-225g 62236374-62248980 +/- 62237083-62245772 + chr4 cluster 212c-227g 64201065-64214805 -/+ 64200041-64215202 -/+ chr4 cluster 214c-230g 65323003-65343027 - 65326001-65342981 - chr4 cluster 219c-234g 68498147-68506975 + 68498147-68507018 + chr4 cluster 220c-235g 72259035-72270029 - 72259614-72270029 - chr4 cluster 221c-236g 72271438-72279895 - 72271562-72283883 - chr4 cluster 222c-237g 73150041-73157786 + 73150041-73158027 + chr4 cluster 223c-238g 74826012-74836024 + 74826023-74836021 + chr4 cluster 224c-239g 74946058-74960030 + 74946028-74958997 + chr4 cluster 225c-240g 75414002-75424026 +/- 75412006-75424004 +/- chr4 cluster 226c-241g 505497-514982 - 503412-515021 - chr5 cluster 229c-243g 645052-676758 +/- 645032-676809 +/- chr5 cluster 230c-244g 39377067-39390714 + 39377096-39390890 + chr5 cluster 231c-245g 47014037-47023022 -/+ 47014019-47025791 -/+ chr5 cluster 232c-246g 47042006-47050792 - 47042006-47050544 - chr5 cluster 235c-249g 52625373-52631016 -/+ 52624072-52631979 -/+ chr5 cluster 238c-251g 53398587-53405027 + 53397004-53405014 + chr5 cluster 239c-252g 9022693-9027743 - 9021026-9028201 - chr6 cluster 240c-253g 15809092-15819688 - 15811615-15817372 - chr6 cluster 241c-254g 17286028-17295986 - 17286020-17296011 - chr6 cluster 242c-256g 18141009-18150025 + 18141154-18150025 + chr6 cluster 243c-257g 18201125-18210974 +/- 18201361-18210874 +/- chr6 cluster 247c-260g 18316016-18324994 -/+ 18316020-18324992 -/+ chr6 cluster 250c-264g 20335038-20350759 - 20335719-20345024 - chr6 cluster 253c-266g 20461315-20470001 + 20461316-20469927 + chr6 cluster 254c-267g 20588024-20608023 - 20588014-20608024 - chr6 cluster 255c-268g 20619003-20627689 -/+ 20619003-20630025 -/+ chr6 cluster 258c-271g 20765358-20798989 -/+ 20765282-20798919 -/+ chr6 cluster 260c-273g 20827018-20834704 - 20827024-20834704 - chr6 cluster 261c-274g 22584019-22604930 -/+ 22584026-22603207 -/+ chr6 cluster 262c-277g 22755053-22763787 + 22755053-22762974 + chr6 cluster 264c-279g 278309-282867 - 278305-282594 - chr7 cluster 265c-280g 3527134-3534026 + 3527363-3534011 + chr7 cluster 268c-281g 4613111-4622022 + 4613105-4622024 + chr7 cluster 271c-283g 37932012-37943901 + 37932031-37943918 + chr7 cluster 272c-284g 45591111-45599975 - 45591010-45600019 - chr7 cluster 273c-285g 60501812-60509004 - 60501801-60510573 - chr7 cluster 275c-287g 366007-376017 - 366011-376008 - chr8 cluster 276c-288g 37477029-37491032 - 37478012-37491479 - chr8 cluster 278c-289g 38804111-38814876 -/+ 38804111-38814869 -/+ chr8 cluster 279c-290g 38826899-38832945 + 38826895-38833006 + chr8 cluster 280c-291g 38966006-38980905 - 38966087-38980761 - chr8 cluster 282c-292g 39217078-39231025 - 39217073-39231010 - chr8 cluster 283c-293g 39418050-39424896 + 39418050-39426968 + chr8 cluster 284c-294g 39544239-39549815 - 39543271-39549824 - chr8 cluster 287c-296g 43651659-43664893 +/- 43651644-43664891 +/- chr8 cluster 288c-297g 44985635-44992025 - 44984067-45004024 - chr8 cluster 290c-298g 45197003-45205907 + 45190119-45208986 -/+ chr8 cluster 291c-299g 45210098-45232001 -/+ 45210098-45224941 -/+ chr8 cluster 294c-302g 45596031-45617214 - 45596034-45618781 - chr8 cluster 297c-304g 45665018-45674022 - 45665515-45673947 -/+ chr8 cluster 298c-305g 45676004-45688022 + 45676004-45688018 + chr8 cluster 299c-309 15660022-15668992 +/- 15657031-15668992 +/- chr9 cluster 300c-310g 15753059-15763011 - 15753239-15762992 - chr9 cluster 303c-s313g 31346942-31352869 - 31347003-31352864 - chr9