Detailed summary for zero-inflated mixed models with negative binomial distribution fitted with glmmTBM function from glmmTBM package. Each model included population as a random factor. -------------------------------------------------------- *** SNP_204238_67 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7599766 1.603148 1.7215981 0.08514235 SNP_204238_67G/G -0.1474469 1.336532 -0.1103206 0.91215515 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.347071 1.566647 0.2215374 0.8246740 SNP_204238_67G/G -1.321842 1.606663 -0.8227250 0.4106644 -------------------------------------------------------- *** SNP_204238_647 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.0168 1.2085 2.496 0.0125 * SNP_204238_647G/G -0.6628 0.7540 -0.879 0.3794 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -15.91 3444.89 -0.005 0.996 SNP_204238_647G/G 14.78 3444.89 0.004 0.997 -------------------------------------------------------- *** SNP_204238_784 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) -13.04 4208.79 -0.003 0.998 SNP_204238_784G/A -15.45 2441252.12 0.000 1.000 SNP_204238_784G/G 15.74 4208.79 0.004 0.997 -------------------------------------------------------- *** SNP_204238_1144 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.7948445 1.2381188 1.449655 0.1471549 SNP_204238_1144G/G 0.7913271 0.7793024 1.015430 0.3099008 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -15.41015 3980.847 -0.003871074 0.9969113 SNP_204238_1144G/G 14.46247 3980.847 0.003633013 0.9971013 -------------------------------------------------------- *** SNP_322391_149 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4644060 0.9851042 2.501670 0.0123609 SNP_322391_149C/T 0.5954993 0.3826336 1.556317 0.1196326 SNP_322391_149T/T -11.0212061 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9897362 0.4444703 -2.2267770 0.02596218 SNP_322391_149C/T -0.1324076 0.7933363 -0.1668997 0.86744900 SNP_322391_149T/T 7.5250101 NaN NaN NaN -------------------------------------------------------- *** SNP_385130_246 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7329708 0.9685319 2.8217663 0.004775997 SNP_385130_246T/C 0.1922372 0.4019808 0.4782249 0.632490157 SNP_385130_246T/T -0.4478160 0.3961691 -1.1303658 0.258322131 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.42177668 0.4683142 -0.90062757 0.3677864 SNP_385130_246T/C -0.05231028 0.5787587 -0.09038357 0.9279824 SNP_385130_246T/T -17.85450075 4936.0828007 -0.00361714 0.9971139 -------------------------------------------------------- *** SNP_385130_247 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3771645 1.411482 1.6841623 0.0921503 SNP_385130_247G/C 0.4970875 1.176240 0.4226073 0.6725818 SNP_385130_247G/G 0.2357473 1.156219 0.2038950 0.8384356 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1969363 2.794518 -0.4283158 0.6684212 SNP_385130_247G/C 0.7365292 2.825201 0.2606997 0.7943241 SNP_385130_247G/G -0.3655681 2.870057 -0.1273731 0.8986451 -------------------------------------------------------- *** SNP_385130_447 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6729 0.9327 2.866 0.00416 ** SNP_385130_447C/T -0.8123 1.1542 -0.704 0.48154 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9692 0.3771 -2.571 0.0102 * SNP_385130_447C/T -9.2300 3516.7748 -0.003 0.9979 -------------------------------------------------------- *** SNP_621907_50 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7594 1.2454 2.216 0.0267 * SNP_621907_50G/A -0.2259 0.9954 -0.227 0.8205 SNP_621907_50G/G -0.5485 1.0545 -0.520 0.6030 -------------------------------------------------------- *** SNP_621907_107 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.531445 3.487289 1.2994175 0.1938007 SNP_621907_107G/A -2.423934 3.437057 -0.7052351 0.4806639 SNP_621907_107G/G -2.282742 3.423093 -0.6668654 0.5048581 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.2316822 5.838997 -0.03967842 0.9683495 SNP_621907_107G/A -0.6863184 5.916842 -0.11599404 0.9076573 SNP_621907_107G/G -0.7061186 5.839382 -0.12092350 0.9037516 -------------------------------------------------------- *** SNP_433236_258 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.8418675 0.9960717 2.8530752 0.004329837 SNP_433236_258A/T -0.3941622 0.3876146 -1.0168922 0.309204732 SNP_433236_258T/T -0.3689498 0.5277585 -0.6990884 0.484496811 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.5110551 0.3906522 -1.3082099 0.1908021 SNP_433236_258A/T -0.6926634 0.7819422 -0.8858243 0.3757122 SNP_433236_258T/T -1.0286396 1.4585905 -0.7052285 0.4806681 -------------------------------------------------------- *** SNP_433236_336 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.568834175 1.426950 1.8002274713 0.07182473 SNP_433236_336T/T -0.001039042 1.145527 -0.0009070422 0.99927629 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -13.50138 4343.649 -0.003108303 0.9975199 SNP_433236_336T/T 12.56127 4343.649 0.002891870 0.9976926 -------------------------------------------------------- *** SNP_228863_252 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5302567 1.0008639 2.528073 0.01146906 SNP_228863_252C/T 0.5582331 0.9310931 0.599546 0.54880886 SNP_228863_252T/T -11.2508503 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9317787 3.704222e-01 -2.5154502618 0.01188805 SNP_228863_252C/T -18.9334084 2.412331e+04 -0.0007848595 0.99937377 SNP_228863_252T/T 3.5649850 NaN NaN NaN -------------------------------------------------------- *** SNP_209960_237 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.0761 0.9997 3.077 0.00209 ** SNP_209960_237T/T -0.6821 0.3486 -1.956 0.05042 . Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.1461 0.3834 -0.381 0.7031 SNP_209960_237T/T -1.1927 0.7154 -1.667 0.0955 . -------------------------------------------------------- *** SNP_393751_426 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5963456 0.9860885 2.6329742 0.008464078 SNP_393751_426C/T -0.4597138 0.7776135 -0.5911855 0.554396113 SNP_393751_426T/T -10.7719893 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8714128 0.3500273 -2.4895568 0.01279025 SNP_393751_426C/T -1.3386887 4.4563644 -0.3003993 0.76387260 SNP_393751_426T/T 4.9847559 NaN NaN NaN -------------------------------------------------------- *** SNP_393751_492 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6646189 0.9960710 2.675130 0.007470037 SNP_393751_492C/T -0.6792630 0.5319732 -1.276874 0.201646560 SNP_393751_492T/T 0.3962222 0.5630892 0.703658 0.481645795 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6373290 0.3201876 -1.9904863 0.04653739 SNP_393751_492C/T -1.6911504 3.2985954 -0.5126880 0.60816956 SNP_393751_492T/T -0.9134328 1.3766177 -0.6635341 0.50698855 -------------------------------------------------------- *** SNP_393751_859 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3282644 1.410261 1.6509455 0.0987497 SNP_393751_859G/G 0.2496605 1.057212 0.2361498 0.8133164 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -2.309504 6.684156 -0.3455192 0.7297040 SNP_393751_859G/G 1.394680 6.668443 0.2091462 0.8343341 -------------------------------------------------------- *** SNP_162264_46 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.7386403 1.927655 1.9394755 0.05244346 SNP_162264_46T/G 0.2737024 1.156171 0.2367318 0.81286486 SNP_162264_46T/T -1.8556678 1.942613 -0.9552432 0.33945474 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -10.98481 3541.402 -3.101827e-03 0.9975251 SNP_162264_46T/G -14.92781 2392680.428 -6.238948e-06 0.9999950 SNP_162264_46T/T 10.04885 3541.402 2.837535e-03 0.9977360 -------------------------------------------------------- *** SNP_344793_874 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9640 2.4377 1.216 0.224 SNP_344793_874G/G -0.1382 2.3360 -0.059 0.953 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.485 2.026 0.733 0.463 SNP_344793_874G/G -2.498 2.051 -1.218 0.223 -------------------------------------------------------- *** SNP_344793_1014 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6424 0.9515 2.777 0.00548 ** SNP_344793_1014C/T -1.0638 1.0454 -1.018 0.30885 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9709 0.3861 -2.515 0.0119 * SNP_344793_1014C/T -11.4411 3577.5796 -0.003 0.9974 -------------------------------------------------------- *** SNP_344793_1115 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5836226 0.9629140 2.6831292 0.007293681 SNP_344793_1115C/T 0.2934656 0.4650403 0.6310541 0.528005146 SNP_344793_1115T/T -8.0418335 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.094778 0.4372703 -2.503664 0.01229148 SNP_344793_1115C/T 1.007793 0.7004927 1.438692 0.15023785 SNP_344793_1115T/T 3.715367 NaN NaN NaN -------------------------------------------------------- *** SNP_41358_42 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.0948745 0.9731868 2.152592 0.03135072 SNP_41358_42T/C 0.4260877 0.3451242 1.234593 0.21698220 SNP_41358_42T/T 0.8257345 0.3328877 2.480520 0.01311909 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -17.66312 4147.286 -0.004258959 0.9966019 SNP_41358_42T/C 16.95406 4147.286 0.004087989 0.9967383 SNP_41358_42T/T 17.03433 4147.285 0.004107345 0.9967228 -------------------------------------------------------- *** SNP_303102_402 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9814508 1.2476560 2.3896418 0.01686481 SNP_303102_402T/C -0.8095689 0.9407437 -0.8605627 0.38947895 SNP_303102_402T/T -0.1771354 0.8608342 -0.2057718 0.83696914 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.1166847 1.132964 0.1029906 0.9179704 SNP_303102_402T/C -1.9373810 2.162258 -0.8959989 0.3702533 SNP_303102_402T/T -0.8892746 1.181852 -0.7524419 0.4517853 -------------------------------------------------------- *** SNP_309599_211 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.717112 1.0540792 3.526406 0.0004212401 SNP_309599_211T/C -1.215229 0.4635597 -2.621516 0.0087539578 SNP_309599_211T/T -1.376006 0.4886031 -2.816204 0.0048594854 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.7890455 0.5219739 1.511657 0.13062118 SNP_309599_211T/C -2.1905811 0.9388513 -2.333257 0.01963468 SNP_309599_211T/T -1.9937629 0.9607283 -2.075262 0.03796226 -------------------------------------------------------- *** SNP_155465_171 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5270302 1.0205950 2.4760363 0.01328501 SNP_155465_171G/A 0.1827637 0.3639254 0.5022010 0.61552611 SNP_155465_171G/G -0.2213830 0.6600798 -0.3353882 0.73733227 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.818460 1.020495 -1.7819381 0.07475933 SNP_155465_171G/A 1.072085 1.061824 1.0096631 0.31265674 SNP_155465_171G/G 1.194644 1.422256 0.8399641 0.40092851 -------------------------------------------------------- *** SNP_155465_594 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.382457 1.114625 2.137452 0.03256128 SNP_155465_594C/T 2.934857 1.437357 2.041843 0.04116708 SNP_155465_594T/T 1.111824 1.317650 0.843793 0.39878509 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9545486 0.3725505 -2.56219901 0.010401170 SNP_155465_594C/T 3.1408282 0.9927097 3.16389386 0.001556736 SNP_155465_594T/T -10.8002521 3995.9637068 -0.00270279 0.997843488 -------------------------------------------------------- *** SNP_265198_105 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.43166350 1.1055017 2.19960179 0.02783516 SNP_265198_105C/T -0.48017225 0.4389930 -1.09380383 0.27404102 SNP_265198_105T/T 0.02967616 0.7325392 0.04051136 0.96768545 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9744758 3.630807e-01 -2.6839100729 0.007276668 SNP_265198_105C/T -15.6031376 4.509893e+03 -0.0034597579 0.997239518 SNP_265198_105T/T -20.1857264 3.412218e+04 -0.0005915721 0.999527994 -------------------------------------------------------- *** SNP_480532_672 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5267 1.0050 2.514 0.0119 * SNP_480532_672C/T -0.3227 1.1972 -0.270 0.7875 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0163 0.4062 -2.502 0.0123 * SNP_480532_672C/T -11.4668 3504.1282 -0.003 0.9974 -------------------------------------------------------- *** SNP_329123_744 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4893804 0.9858659 2.5250700 0.01156753 SNP_329123_744C/T 0.0997398 0.4532684 0.2200458 0.82583550 SNP_329123_744T/T 1.1869442 0.6196357 1.9155515 0.05542221 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0942658 0.4978696 -2.1978966 0.02795648 SNP_329123_744C/T 0.2563679 0.8250271 0.3107388 0.75599919 SNP_329123_744T/T 1.2708797 1.1201558 1.1345561 0.25656134 -------------------------------------------------------- *** SNP_428810_55 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.49847619 0.9972304 2.50541512 0.01223078 SNP_428810_55A/T -0.01231209 0.4262128 -0.02888719 0.97695456 SNP_428810_55T/T 0.33777673 0.7643891 0.44189108 0.65856803 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.2655094 0.5449893 -2.3220814 0.02022855 SNP_428810_55A/T 0.8222480 0.7111566 1.1562124 0.24759431 SNP_428810_55T/T 0.6558418 1.2308148 0.5328517 0.59413626 -------------------------------------------------------- *** SNP_381177_366 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3894 1.0472 2.282 0.0225 * SNP_381177_366C/T 0.8407 0.5646 1.489 0.1365 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8679 0.3404 -2.549 0.0108 * SNP_381177_366C/T -17.2870 4096.8486 -0.004 0.9966 -------------------------------------------------------- *** SNP_435139_834 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6233 0.9793 2.679 0.00739 ** SNP_435139_834C/T -0.9281 0.4977 -1.865 0.06221 . Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0385 0.3738 -2.778 0.00547 ** SNP_435139_834C/T -14.0578 3601.3065 -0.004 0.99689 -------------------------------------------------------- *** SNP_354713_654 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5974370 0.9964631 2.6066566 0.009143101 SNP_354713_654G/T -0.2273258 0.5100824 -0.4456648 0.655839373 SNP_354713_654T/T -16.8502802 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.894613 0.3411936 -2.622010103 0.008741284 SNP_354713_654G/T -16.035495 4125.1528946 -0.003887249 0.996898432 SNP_354713_654T/T 7.603105 NaN NaN NaN -------------------------------------------------------- *** SNP_222230_528 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5268736 1.002718 2.5200243 0.01173467 SNP_222230_528C/T 0.9296557 1.679428 0.5535549 0.57988351 SNP_222230_528T/T -10.9860719 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9922004 0.3793055 -2.6158342 0.008900976 SNP_222230_528C/T 0.8979946 2.2986100 0.3906685 0.696042270 SNP_222230_528T/T 3.4932921 NaN NaN NaN -------------------------------------------------------- *** SNP_222230_1003 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.67353125 0.8966976 2.9815305 0.002868115 SNP_222230_1003C/T 0.04443728 0.3866672 0.1149239 0.908505468 SNP_222230_1003T/T -0.31817668 0.4240226 -0.7503768 0.453027826 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.86680648 0.4581391 -1.892016059 0.05848884 SNP_222230_1003C/T -0.03462265 0.6492146 -0.053330057 0.95746893 SNP_222230_1003T/T -17.28464424 4462.7666223 -0.003873078 0.99690974 -------------------------------------------------------- *** SNP_404977_723 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.567 2.813 1.624 0.104 SNP_404977_723G/G -2.067 2.716 -0.761 0.447 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.447 2.303 0.628 0.530 SNP_404977_723G/G -2.384 2.322 -1.027 0.304 -------------------------------------------------------- *** SNP_369888_60 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.2415233 1.482668 1.5118172 0.1305804 SNP_369888_60G/A 0.8688425 1.164912 0.7458442 0.4557615 SNP_369888_60G/G 0.1626006 1.150340 0.1413501 0.8875934 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -2.349339 6.883916 -0.3412794 0.7328933 SNP_369888_60G/A 1.594126 6.897356 0.2311213 0.8172205 SNP_369888_60G/G 1.347831 6.879016 0.1959337 0.8446620 -------------------------------------------------------- *** SNP_369888_93 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7949611 0.9957615 2.8068580 0.005002729 SNP_369888_93T/T -0.2664812 0.3799966 -0.7012727 0.483132870 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6822248 0.4962186 -1.3748473 0.1691788 SNP_369888_93T/T -0.4558560 0.6837247 -0.6667245 0.5049481 -------------------------------------------------------- *** SNP_369888_307 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3217201 0.9849806 2.3571226 0.01841716 SNP_369888_307A/G 0.6315701 0.3537713 1.7852496 0.07422084 SNP_369888_307G/G -0.3609661 0.4820918 -0.7487496 0.45400814 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.334520 0.7525856 -1.77324674 0.07618783 SNP_369888_307A/G 0.902432 0.8057394 1.12000481 0.26271171 SNP_369888_307G/G -13.491507 2962.7372819 -0.00455373 0.99636666 -------------------------------------------------------- *** SNP_252388_426 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7023050 0.9648083 2.8008725 0.005096465 SNP_252388_426C/T -0.3352862 0.4352720 -0.7702913 0.441127123 SNP_252388_426T/T -0.8217401 2.2260831 -0.3691417 0.712022116 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.7753937 0.3581126 -2.16522351 0.03037057 SNP_252388_426C/T -0.7360448 1.1951110 -0.61587987 0.53797381 SNP_252388_426T/T -0.1335458 5.3536983 -0.02494458 0.98009916 -------------------------------------------------------- *** SNP_271438_39 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.601110 0.9926954 2.620250 0.008786545 SNP_271438_39A/G -1.731554 1.0479998 -1.652247 0.098484261 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9684382 0.3811517 -2.540820655 0.01105926 SNP_271438_39A/G -11.9626623 3422.6573552 -0.003495139 0.99721129 -------------------------------------------------------- *** SNP_271438_626 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4394236 0.9851229 2.4762632 0.01327657 SNP_271438_626A/G 0.3939339 0.3547659 1.1104053 0.26682444 SNP_271438_626G/G 0.1180532 0.9511351 0.1241182 0.90122166 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0828189 0.5416465 -1.9991247 0.04559487 SNP_271438_626A/G 0.3588647 0.6825428 0.5257761 0.59904376 SNP_271438_626G/G 0.2270410 1.6662402 0.1362595 0.89161614 -------------------------------------------------------- *** SNP_271438_627 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9006904 1.0419850 2.7838121 0.005372415 SNP_271438_627T/C -0.2186836 0.4542150 -0.4814539 0.630193930 SNP_271438_627T/T -0.5747254 0.4822056 -1.1918678 0.233313085 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.3968430 0.5832376 -0.6804139 0.4962424 SNP_271438_627T/C -0.1397681 0.6929292 -0.2017062 0.8401464 SNP_271438_627T/T -1.2771404 1.1711000 -1.0905477 0.2754720 -------------------------------------------------------- *** SNP_314888_504 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.56701558 1.1645497 2.20429881 0.02750334 SNP_314888_504C/C 0.05052903 0.8070674 0.06260819 0.95007850 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.15368 4494.839 -0.003593829 0.9971325 SNP_314888_504C/C 15.11645 4494.839 0.003363068 0.9973167 -------------------------------------------------------- *** SNP_433232_225 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4722944 1.0111412 2.4450535 0.01448306 SNP_433232_225C/T 1.1121716 0.4714707 2.3589411 0.01832716 SNP_433232_225T/T -0.2212365 0.9876811 -0.2239959 0.82276053 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9894339 0.3855016 -2.566614248 0.01026968 SNP_433232_225C/T 1.6308530 0.6949073 2.346864295 0.01893215 SNP_433232_225T/T -15.6300511 4594.9622512 -0.003401562 0.99728595 -------------------------------------------------------- *** SNP_372070_273 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.099519 1.586206 2.584480 0.009752584 SNP_372070_273G/A -1.500472 1.352979 -1.109014 0.267424089 SNP_372070_273G/G -1.449095 1.349351 -1.073919 0.282858770 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.2373209 1.738923 -0.136475793 0.8914452 SNP_372070_273G/A -16.4253880 4575.480310 -0.003589872 0.9971357 SNP_372070_273G/G -0.7244458 1.780103 -0.406968481 0.6840311 -------------------------------------------------------- *** SNP_221652_115 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1356756 1.432463 1.4909120 0.1359846 SNP_221652_115G/A 0.6068308 1.065305 0.5696311 0.5689279 SNP_221652_115G/G 0.2074697 1.045477 0.1984450 0.8426969 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -14.60709 3753.412 -0.003891681 0.9968949 SNP_221652_115G/A 12.25727 3753.413 0.003265633 0.9973944 SNP_221652_115G/G 13.75791 3753.413 0.003665441 0.9970754 -------------------------------------------------------- *** SNP_266965_261 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5096250 0.9997791 2.5101797 0.01206698 SNP_266965_261C/T 0.2469309 0.5187464 0.4760146 0.63406400 SNP_266965_261T/T 0.6509938 4.5660150 0.1425737 0.88662685 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8827707 0.3709937 -2.3794760 0.01733727 SNP_266965_261C/T -0.7760956 1.4204009 -0.5463919 0.58479655 SNP_266965_261T/T 2.1665475 4.7943448 0.4518965 0.65134356 -------------------------------------------------------- *** SNP_410766_552*** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6092360 1.0636351 2.4531308 0.01416188 SNP_410766_552C/T -0.6617879 0.4520468 -1.4639809 0.14319916 SNP_410766_552T/T -0.2862819 0.6774286 -0.4226009 0.67258650 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9802902 0.3930033 -2.49435625 0.01261858 SNP_410766_552C/T -0.1977649 1.0706301 -0.18471824 0.85345004 SNP_410766_552T/T 0.1030889 1.3538839 0.07614312 0.93930524 -------------------------------------------------------- *** SNP_410766_569 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3723748 0.9380781 2.5289735 0.011439666 SNP_410766_569C/T 0.9487707 0.3430487 2.7657026 0.005680031 SNP_410766_569T/T 0.3771694 1.0170668 0.3708403 0.710756491 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.2537262 0.6495840 -1.9300447 0.0536013 SNP_410766_569C/T 0.7202824 0.7589084 0.9491033 0.3425681 SNP_410766_569T/T 1.0192260 1.4122311 0.7217133 0.4704708 -------------------------------------------------------- *** SNP_410766_570 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.54782699 1.0067598 2.5307199 0.01138287 SNP_410766_570A/G 0.01420165 0.3758452 0.0377859 0.96985839 SNP_410766_570G/G 0.09446126 0.7609612 0.1241341 0.90120907 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.7043577 0.4146065 -1.6988585 0.08934585 SNP_410766_570A/G -0.8095919 0.8783946 -0.9216722 0.35669959 SNP_410766_570G/G 0.2622256 1.1867965 0.2209524 0.82512948 -------------------------------------------------------- *** SNP_410766_610 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4207880 1.0832713 2.2347016 0.02543695 SNP_410766_610C/G -0.2131634 0.4029568 -0.5289983 0.59680663 SNP_410766_610G/G 0.4689829 0.9727932 0.4820993 0.62973543 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8999538 3.598521e-01 -2.500899e+00 0.01238786 SNP_410766_610C/G -29.4087950 1.012442e+07 -2.904740e-06 0.99999768 SNP_410766_610G/G -12.6615830 3.765063e+03 -3.362914e-03 0.99731679 -------------------------------------------------------- *** SNP_410766_624 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6745691 0.9735720 2.7471713 0.006011173 SNP_410766_624C/T -0.3189372 0.4517337 -0.7060293 0.480169902 SNP_410766_624T/T -9.5141055 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.7710648 0.3649309 -2.1129065 0.03460878 SNP_410766_624C/T -1.1481822 1.7582073 -0.6530414 0.51372959 SNP_410766_624T/T 9.3166532 NaN NaN NaN -------------------------------------------------------- *** SNP_461687_643 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6422876 0.9738141 2.7133389 0.006660895 SNP_461687_643A/G -0.1191889 0.3903817 -0.3053138 0.760127157 SNP_461687_643G/G 0.1058632 0.6020231 0.1758458 0.860415087 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6905285 0.4164134 -1.6582763 0.09726171 SNP_461687_643A/G -0.5165742 0.7883730 -0.6552408 0.51231271 SNP_461687_643G/G -1.2672001 1.8736982 -0.6763096 0.49884408 -------------------------------------------------------- *** SNP_461687_699 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4225116 0.9735514 2.4883244 0.01283466 SNP_461687_699G/T 0.6364537 0.3378915 1.8836034 0.05961864 SNP_461687_699T/T -0.1968491 0.5521378 -0.3565216 0.72144996 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.94933512 0.4719338 -2.011585367 0.04426366 SNP_461687_699G/T 0.09716347 0.6415691 0.151446635 0.87962340 SNP_461687_699T/T -15.26652307 3888.5635692 -0.003926006 0.99686751 -------------------------------------------------------- *** SNP_589289_144 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4021641 0.9761863 2.46076385 0.01386416 SNP_589289_144A/G 0.5865139 0.3477890 1.68640729 0.09171738 SNP_589289_144G/G 0.0850284 1.0020208 0.08485692 0.93237514 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.96855995 0.5111212 -1.89497130 0.0580962 SNP_589289_144A/G 0.02884103 0.6788509 0.04248508 0.9661120 SNP_589289_144G/G -1.15380050 4.1395640 -0.27872512 0.7804558 -------------------------------------------------------- *** SNP_234776_254 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5550423 0.9647065 2.6485178 0.008084559 SNP_234776_254T/T 0.1324026 0.4119273 0.3214223 0.747890365 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.8568276 1.425014 -1.3030240 0.1925666 SNP_234776_254T/T 0.9821984 1.438927 0.6825908 0.4948655 -------------------------------------------------------- *** SNP_234776_486 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.8200659 0.9861549 2.8596580 0.004240981 SNP_234776_486C/T -0.6191843 0.4985511 -1.2419676 0.214248516 SNP_234776_486T/T -0.4013519 0.7030545 -0.5708688 0.568088591 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.5493917 0.2946911 -1.86429648 0.06228008 SNP_234776_486C/T -1.6150808 2.5668410 -0.62920952 0.52921190 SNP_234776_486T/T -4.3275892 44.7959836 -0.09660663 0.92303879 -------------------------------------------------------- *** SNP_342084_2497 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.99926749 1.471924 2.03765096 0.04158485 SNP_342084_2497T/C -0.04626343 0.960959 -0.04814298 0.96160229 SNP_342084_2497T/T -0.79502775 1.245723 -0.63820581 0.52333972 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -13.29972 2978.483 -4.465268e-03 0.9964372 SNP_342084_2497T/C -17.52556 5670633.200 -3.090583e-06 0.9999975 SNP_342084_2497T/T 12.36171 2978.483 4.150338e-03 0.9966885 -------------------------------------------------------- *** SNP_362654_2058 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4761660 0.9781834 2.531392 0.01136107 SNP_362654_2058C/T 0.4489676 0.3732409 1.202890 0.22901899 SNP_362654_2058T/T -12.7961139 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1580460 0.5901124 -1.9624160 0.04971407 SNP_362654_2058C/T 0.5141706 0.7193628 0.7147584 0.47475837 SNP_362654_2058T/T 5.3665960 NaN NaN NaN -------------------------------------------------------- *** SNP_153958_145 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7264 1.0604 2.571 0.0101 * SNP_153958_145G/G -0.1428 0.5035 -0.284 0.7767 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.94963 0.93411 -1.017 0.309 SNP_153958_145G/G 0.02817 0.98809 0.028 0.977 -------------------------------------------------------- *** SNP_153958_384 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.58208798 1.0201383 2.53111573 0.01137003 SNP_153958_384A/G -0.00526665 0.4250788 -0.01238982 0.99011461 SNP_153958_384G/G 0.17927330 0.4743242 0.37795524 0.70546384 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.6881197 1.013219 -1.6660964 0.09569422 SNP_153958_384A/G 1.0351834 1.078517 0.9598210 0.33714529 SNP_153958_384G/G 0.3570125 1.229074 0.2904728 0.77145455 -------------------------------------------------------- *** SNP_223488_1410 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.736437 1.394788 2.6788572 0.007387389 SNP_223488_1410T/C -1.018381 1.049405 -0.9704361 0.331829178 SNP_223488_1410T/T -1.270616 1.045575 -1.2152322 0.224277547 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.8727664 1.229399 0.709913 0.4777581 SNP_223488_1410T/C -1.6318318 1.323918 -1.232578 0.2177333 SNP_223488_1410T/T -1.9657105 1.323551 -1.485180 0.1374963 -------------------------------------------------------- *** SNP_223488_1530 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5516940 0.9577524 2.664252 0.007715968 SNP_223488_1530A/G 0.5549814 0.6016750 0.922394 0.356323089 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9459932 0.3613752 -2.617759079 0.008850927 SNP_223488_1530A/G -16.0990689 3604.6506953 -0.004466194 0.996436505 -------------------------------------------------------- *** SNP_72382_149 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6930749 1.0400879 2.5892762 0.009617792 SNP_72382_149C/T -0.2377573 0.3322730 -0.7155481 0.474270431 SNP_72382_149T/T -1.1896061 0.9295868 -1.2797149 0.200645427 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8149597 0.4111607 -1.9820955 0.04746855 SNP_72382_149C/T -0.4990193 0.7053253 -0.7075024 0.47925435 SNP_72382_149T/T -1.9634047 10.6787947 -0.1838601 0.85412318 -------------------------------------------------------- *** SNP_373125_426 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7735543 1.1039880 2.5123047 0.01199455 SNP_373125_426T/C -0.3475772 0.5831526 -0.5960312 0.55115437 SNP_373125_426T/T -0.4368458 0.5918218 -0.7381374 0.46043097 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6543211 0.913484 -0.7162918 0.4738112 SNP_373125_426T/C -0.1185859 1.025033 -0.1156898 0.9078984 SNP_373125_426T/T -0.4072532 1.030279 -0.3952842 0.6926331 -------------------------------------------------------- *** SNP_373125_792 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6277754 1.0007874 2.6257079 0.008646899 SNP_373125_792C/T -0.5893607 0.9505798 -0.6200013 0.535256956 SNP_373125_792T/T -0.6621243 0.6769469 -0.9781038 0.328023010 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.888605 0.3584956 -2.478705114 0.01318603 SNP_373125_792C/T -1.400914 6.2579097 -0.223862901 0.82286398 SNP_373125_792T/T -13.594079 3263.6330455 -0.004165321 0.99667656 -------------------------------------------------------- *** SNP_438995_351 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4409775 1.039293 2.348689 0.01883962 SNP_438995_351A/C 0.4432418 0.414080 1.070426 0.28442781 SNP_438995_351C/C 2.1198135 1.487457 1.425126 0.15412085 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0015055 0.4208833 -2.3795325 0.01733461 SNP_438995_351A/C -0.2751798 0.9356095 -0.2941183 0.76866754 SNP_438995_351C/C 2.5455468 1.3635207 1.8668927 0.06191657 -------------------------------------------------------- *** SNP_281950_1015 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7813124 1.3048408 2.1315340 0.03304518 SNP_281950_1015G/A 0.1089533 0.9286502 0.1173244 0.90660302 SNP_281950_1015G/G -0.2828712 0.9138303 -0.3095445 0.75690735 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.6924546 0.9025889 0.7671871 0.44297027 SNP_281950_1015G/A -1.0902409 0.9822203 -1.1099759 0.26700940 SNP_281950_1015G/G -1.9934518 1.0492005 -1.8999723 0.05743676 -------------------------------------------------------- *** SNP_281950_1710 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.69681543 1.0085932 2.67383848 0.007498856 SNP_281950_1710A/G 0.03421392 0.3714959 0.09209772 0.926620403 SNP_281950_1710G/G -0.60332944 0.6132456 -0.98383010 0.325199056 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.340085 0.3963659 -0.8580077 0.3908882 SNP_281950_1710A/G -0.711066 0.6226841 -1.1419370 0.2534802 SNP_281950_1710G/G -3.331672 13.1376541 -0.2535972 0.7998068 -------------------------------------------------------- *** SNP_318275_2206 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.3550 1.2866 2.608 0.00912 ** SNP_318275_2206G/G -0.6747 0.9409 -0.717 0.47332 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.272 1.060 1.200 0.2303 SNP_318275_2206G/G -2.298 1.132 -2.031 0.0422 * -------------------------------------------------------- *** SNP_526800_134 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.8038204 1.2396763 1.4550737 0.1456488 SNP_526800_134G/C 0.5114763 0.9292144 0.5504395 0.5820180 SNP_526800_134G/G 0.8799420 0.8257137 1.0656745 0.2865708 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -14.53509 3790.031 -0.003835084 0.9969401 SNP_526800_134G/C 13.35479 3790.034 0.003523660 0.9971885 SNP_526800_134G/G 13.57800 3790.031 0.003582557 0.9971415 -------------------------------------------------------- *** SNP_262882_163 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.9611516 1.0697331 1.833309 0.06675659 SNP_262882_163G/A 0.7727192 0.5327484 1.450439 0.14693607 SNP_262882_163G/G 0.9269702 0.6216404 1.491168 0.13591741 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -2.286550 3.421178 -0.6683516 0.5039092 SNP_262882_163G/A 1.407443 3.410779 0.4126455 0.6798663 SNP_262882_163G/G 2.137962 3.435343 0.6223430 0.5337164 -------------------------------------------------------- *** SNP_262882_252 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6119822 0.9824966 2.6585153 0.007848579 SNP_262882_252C/T -1.0197843 0.3752889 -2.7173311 0.006581074 SNP_262882_252T/T 0.6243241 0.8603805 0.7256371 0.468061241 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8485788 3.138323e-01 -2.703923881 0.006852598 SNP_262882_252C/T -15.2728880 3.803306e+03 -0.004015688 0.996795953 SNP_262882_252T/T -22.2899578 1.057960e+05 -0.000210688 0.999831895 -------------------------------------------------------- *** SNP_121540_174 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1598446 1.2567516 1.7185931 0.08568850 SNP_121540_174A/G 0.1887598 0.5758186 0.3278113 0.74305433 SNP_121540_174G/G 3.2896080 1.3130948 2.5052326 0.01223709 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9520848 0.3791959 -2.5107997 0.012045804 SNP_121540_174A/G 0.1486147 1.0068161 0.1476086 0.882651693 SNP_121540_174G/G 2.4441240 0.8728940 2.8000238 0.005109885 -------------------------------------------------------- *** SNP_121540_874 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6399244 1.1122410 2.3735184 0.01761951 SNP_121540_874G/A -0.1166204 0.4968572 -0.2347161 0.81442909 SNP_121540_874G/G -0.4401863 0.5413761 -0.8130879 0.41616767 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0680101 0.8639759 -1.2361573 0.2164001 SNP_121540_874G/A -0.4506875 1.0569742 -0.4263940 0.6698207 SNP_121540_874G/G 0.4401963 0.9900248 0.4446316 0.6565860 -------------------------------------------------------- *** SNP_152845_180 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.873495 1.0315301 3.755096 0.0001732751 SNP_152845_180G/A -1.242079 0.5116835 -2.427437 0.0152059219 SNP_152845_180G/G -1.399447 0.4453159 -3.142594 0.0016745800 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -17.95629 3963.955 -0.004529892 0.9963857 SNP_152845_180G/A 17.19179 3963.955 0.004337031 0.9965396 SNP_152845_180G/G 16.87313 3963.955 0.004256640 0.9966037 -------------------------------------------------------- *** SNP_152845_240 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9237565 1.0054058 2.9080364 0.003637061 SNP_152845_240C/T -0.3194242 0.5179715 -0.6166830 0.537443813 SNP_152845_240T/T -0.1555515 0.5565464 -0.2794942 0.779865587 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.1175509 0.5581813 0.2105963 0.8332023 SNP_152845_240C/T -1.2918745 0.8016224 -1.6115748 0.1070545 SNP_152845_240T/T -1.2529787 0.8554420 -1.4647149 0.1429987 -------------------------------------------------------- *** SNP_183332_760 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.6717 0.9966 1.677 0.0935 . SNP_183332_760C/C 1.1213 0.5495 2.041 0.0413 * Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -12.37 3872.97 -0.003 0.997 SNP_183332_760C/C 11.35 3872.97 0.003 0.998 -------------------------------------------------------- *** SNP_183332_963 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4940147 0.9959491 2.5041589 0.01227429 SNP_183332_963C/T 0.1888052 0.4210359 0.4484303 0.65384269 SNP_183332_963T/T 0.7503534 0.8831406 0.8496421 0.39552412 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.239355 0.5038910 -2.459570636 0.01391033 SNP_183332_963C/T 1.057928 0.6766802 1.563409141 0.11795639 SNP_183332_963T/T -14.815933 4003.5006846 -0.003700744 0.99704724 -------------------------------------------------------- *** SNP_183332_1134 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5775068 0.9759934 2.6409058 0.008268469 SNP_183332_1134C/T 0.2127277 0.5992559 0.3549864 0.722599815 SNP_183332_1134T/T -11.5726130 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9318481 0.3858469 -2.4150724 0.01573208 SNP_183332_1134C/T -0.3135531 1.1822134 -0.2652255 0.79083578 SNP_183332_1134T/T 5.3443081 NaN NaN NaN -------------------------------------------------------- *** SNP_334485_624 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7142 0.8152 3.330 0.00087 *** SNP_334485_624C/T -17.8200 4097.0436 -0.004 0.99653 SNP_334485_624T/T 0.5025 1.1332 0.443 0.65747 -------------------------------------------------------- *** SNP_100265_641 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.53696964 1.0677660 2.3759603 0.01750335 SNP_100265_641C/T -0.78167061 0.3109613 -2.5137228 0.01194643 SNP_100265_641T/T 0.08806274 0.7602158 0.1158391 0.90778004 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6996442 0.3009034 -2.325145708 0.02006417 SNP_100265_641C/T -14.5932438 3745.7882576 -0.003895907 0.99689152 SNP_100265_641T/T 0.6960178 0.9786577 0.711196373 0.47696256 -------------------------------------------------------- *** SNP_600228_243 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4611561 0.9899791 2.4860687 0.0129163 SNP_600228_243A/C 0.5181111 0.4018554 1.2892974 0.1972947 SNP_600228_243C/C 0.7408023 0.8989562 0.8240694 0.4099001 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.091718 0.4923488 -2.21736727 0.0265980 SNP_600228_243A/C 0.759678 0.6977571 1.08874282 0.2762673 SNP_600228_243C/C -15.197842 3445.3476698 -0.00441112 0.9964804 -------------------------------------------------------- *** SNP_600228_315 *** Model encountered the complete separation problem. Could not be fitted, as only two genotypes were present. -------------------------------------------------------- *** SNP_600228_549 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5839 0.8423 3.068 0.00216 ** SNP_600228_549C/T -22.7150 40370.8932 -0.001 0.99955 SNP_600228_549T/T -14.5296 3936.0921 -0.004 0.99705 -------------------------------------------------------- *** SNP_260500_369 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5288028 0.9795881 2.581496 0.009837309 SNP_260500_369C/T 0.8196872 0.6711414 1.221333 0.221959957 SNP_260500_369T/T 1.1199647 1.0003586 1.119563 0.262899904 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.080333 0.3891756 -2.77595178 0.005504037 SNP_260500_369C/T 2.018979 0.7308239 2.76260664 0.005734183 SNP_260500_369T/T -15.816769 4668.3024264 -0.00338812 0.997296677 -------------------------------------------------------- *** SNP_293928_105 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5475183 0.9591578 2.6559948 0.007907482 SNP_293928_105C/T 0.2795262 0.4326188 0.6461258 0.518197857 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.93974568 0.4084837 -2.30057081 0.0214159 SNP_293928_105C/T -0.02356493 0.8342973 -0.02824524 0.9774666 -------------------------------------------------------- *** SNP_292200_906 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6160504 0.9705989 2.6952951 0.007032631 SNP_292200_906A/T -0.4501061 1.7284681 -0.2604075 0.794549437 SNP_292200_906T/T -8.2032218 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9181143 0.3677428 -2.49662111 0.01253828 SNP_292200_906A/T -4.1855614 183.5146620 -0.02280778 0.98180360 SNP_292200_906T/T 3.7611127 NaN NaN NaN -------------------------------------------------------- *** SNP_292200_1193 *** Model encountered the complete separation problem. Could not be fitted, as only two genotypes were pres -------------------------------------------------------- *** SNP_203955_360 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.8773713 0.9501614 1.975845 0.04817239 SNP_203955_360A/G 0.9427002 0.3696542 2.550222 0.01076545 SNP_203955_360G/G 0.8573271 0.3895337 2.200906 0.02774265 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -14.41323 3527.547 -0.004085907 0.9967399 SNP_203955_360A/G 13.69768 3527.547 0.003883060 0.9969018 SNP_203955_360G/G 13.38402 3527.547 0.003794144 0.9969727 -------------------------------------------------------- *** SNP_203955_702 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9866900 1.0494896 2.845850 0.004429304 SNP_203955_702T/C -0.4555969 0.4838370 -0.941633 0.346380552 SNP_203955_702T/T -0.5084146 0.5024143 -1.011943 0.311565258 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.3986282 0.9114665 -1.5344813 0.1249113 SNP_203955_702T/C 0.6957266 1.0277873 0.6769169 0.4984587 SNP_203955_702T/T 0.1709465 1.1563171 0.1478371 0.8824714 -------------------------------------------------------- *** SNP_374909_24 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3810229 0.9991059 2.383154 0.01716503 SNP_374909_24C/T 0.5185096 0.3782103 1.370956 0.17038869 SNP_374909_24T/T 1.2003293 0.5913069 2.029960 0.04236063 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0294875 0.5136831 -2.00412976 0.04505616 SNP_374909_24C/T 0.2755597 0.7380234 0.37337525 0.70886918 SNP_374909_24T/T -16.4173125 3911.3798019 -0.00419732 0.99665103 -------------------------------------------------------- *** SNP_232236_192 *** Model encountered the complete separation problem. Could not be fitted, as only two genotypes were present. -------------------------------------------------------- *** SNP_232236_534 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.29657135 1.0076157 2.279214 0.02265438 SNP_232236_534G/A -0.02853751 0.4507086 -0.063317 0.94951408 SNP_232236_534G/G 0.47229380 0.3820477 1.236217 0.21637799 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -12.05511 3693.194 -0.003264142 0.9973956 SNP_232236_534G/A 10.41231 3693.190 0.002819328 0.9977505 SNP_232236_534G/G 11.52957 3693.193 0.003121844 0.9975091 -------------------------------------------------------- *** SNP_232236_1065 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.9562728 1.0751024 1.819615 0.06881761 SNP_232236_1065G/A 0.7501458 0.4584500 1.636265 0.10178410 SNP_232236_1065G/G 0.5077461 0.4294838 1.182224 0.23711673 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.70468 4506.454 -0.003706834 0.9970424 SNP_232236_1065G/A 16.59873 4506.454 0.003683323 0.9970611 SNP_232236_1065G/G 15.27043 4506.454 0.003388568 0.9972963 -------------------------------------------------------- *** SNP_231234_204 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.66681088 1.006585 2.64936352 0.008064354 SNP_231234_204C/T -0.29290845 0.484143 -0.60500404 0.545176310 SNP_231234_204T/T -0.07780732 0.803284 -0.09686154 0.922836351 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6829285 0.3611554 -1.890954845 0.05863037 SNP_231234_204C/T -1.1107164 1.6254111 -0.683344909 0.49438892 SNP_231234_204T/T -15.7063827 3634.5765254 -0.004321379 0.99655205 -------------------------------------------------------- *** SNP_231234_262 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.0837 1.1103 1.877 0.0606 . SNP_231234_262G/G 0.5604 0.6025 0.930 0.3523 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -15.29 3514.48 -0.004 0.997 SNP_231234_262G/G 14.34 3514.48 0.004 0.997 -------------------------------------------------------- *** SNP_231234_351 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4004547 0.9516791 2.522336 0.01165782 SNP_231234_351A/C 0.8678833 0.3808800 2.278626 0.02268929 SNP_231234_351C/C 1.2636175 0.6500773 1.943796 0.05192008 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.167509642 0.6444798 -1.81155351 0.07005521 SNP_231234_351A/C 0.001885183 0.8541913 0.00220698 0.99823909 SNP_231234_351C/C 1.227116254 1.1943243 1.02745653 0.30420554 -------------------------------------------------------- *** SNP_231234_1035 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4170089 1.0852246 2.2271969 0.02593412 SNP_231234_1035C/C 0.1841544 0.5459769 0.3372934 0.73589572 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.4708304 1.495743 -0.9833447 0.3254378 SNP_231234_1035C/C 0.5988262 1.506576 0.3974750 0.6910172 -------------------------------------------------------- *** SNP_231234_2074 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.936 1.446 1.339 0.181 SNP_231234_2074G/T 1.633 1.767 0.924 0.355 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.0790 0.4312 -2.502 0.0123 * SNP_231234_2074G/T -11.7501 3908.7402 -0.003 0.9976 -------------------------------------------------------- *** SNP_231234_2083 *** Model encountered the complete separation problem. Could not be fitted, as only two genotypes were present. -------------------------------------------------------- *** SNP_225441_354 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.21389792 1.420489 1.55854592 0.1191039 SNP_225441_354T/C 0.03011508 1.169492 0.02575056 0.9794563 SNP_225441_354T/T 0.71589058 1.137218 0.62951062 0.5290148 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.0342598 1.498563 -0.02286177 0.9817605 SNP_225441_354T/C -1.8016761 2.086240 -0.86359956 0.3878079 SNP_225441_354T/T -1.0068058 1.536734 -0.65515931 0.5123652 -------------------------------------------------------- *** SNP_251818_120 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3817255 1.0381350 2.294235 0.02177701 SNP_251818_120C/T 0.6076101 0.4559929 1.332499 0.18269625 SNP_251818_120T/T 1.2913980 0.7346936 1.757737 0.07879229 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.136305 0.4250331 -2.673450 0.00750755 SNP_251818_120C/T 1.399837 0.6794174 2.060349 0.03936522 SNP_251818_120T/T 1.687728 1.0579357 1.595303 0.11064457 -------------------------------------------------------- *** SNP_142225_405 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.57038620 1.1352576 2.2641435 0.02356529 SNP_142225_405T/C 0.13831662 0.8546475 0.1618406 0.87143142 SNP_142225_405T/T 0.09601606 0.8515388 0.1127559 0.91022405 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8677604 1.666896 -0.52058464 0.6026562 SNP_142225_405T/C -0.1611762 1.771980 -0.09095822 0.9275258 SNP_142225_405T/T -0.5806011 1.752858 -0.33123107 0.7404700 -------------------------------------------------------- *** SNP_623775_504 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1085231 1.173106 1.7973843 0.07227462 SNP_623775_504T/C -0.2748006 0.875207 -0.3139835 0.75353354 SNP_623775_504T/T 0.5784520 0.772393 0.7489090 0.45391207 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -10.75303 4460.046 -2.410968e-03 0.9980763 SNP_623775_504T/C -13.76093 707866.424 -1.944001e-05 0.9999845 SNP_623775_504T/T 9.81717 4460.046 2.201136e-03 0.9982437 -------------------------------------------------------- *** SNP_240627_207 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.2813357 1.0639072 2.144299 0.03200891 SNP_240627_207C/T 0.3993919 0.3410139 1.171189 0.24152264 SNP_240627_207T/T 1.7086789 0.7555304 2.261562 0.02372447 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8325526 0.4761129 -1.7486454 0.08035233 SNP_240627_207C/T -0.5948680 0.7364638 -0.8077356 0.41924283 SNP_240627_207T/T 1.4389327 1.5182717 0.9477439 0.34325985 -------------------------------------------------------- *** SNP_240627_381 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5563691 0.9693159 2.6372919 0.008357087 SNP_240627_381C/T 0.2953758 0.6655415 0.4438127 0.657178027 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8919911 0.3504711 -2.545120296 0.01092401 SNP_240627_381C/T -16.3057640 4422.6982292 -0.003686836 0.99705834 -------------------------------------------------------- *** SNP_340268_193 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.5380281 1.1116917 3.182562 0.001459781 SNP_340268_193G/A -2.0537752 0.9811007 -2.093338 0.036319007 SNP_340268_193G/G -0.9803302 0.6150795 -1.593827 0.110974851 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8660073 1.164298 -0.7438023 0.4569961 SNP_340268_193G/A -0.6461753 3.278268 -0.1971088 0.8437424 SNP_340268_193G/G -0.1781931 1.210190 -0.1472439 0.8829395 -------------------------------------------------------- *** SNP_199751_1059 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.2314 1.0501 2.125 0.0336 * SNP_199751_1059G/G 0.3875 0.6153 0.630 0.5289 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -14.44 3433.62 -0.004 0.997 SNP_199751_1059G/G 13.40 3433.62 0.004 0.997 -------------------------------------------------------- *** SNP_101329_103 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.8011903 0.8725111 3.2104926 0.001325077 SNP_101329_103A/G 0.0881174 0.6913677 0.1274537 0.898581295 SNP_101329_103G/G -12.8820544 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.089870 0.4181268 -2.606553 0.009145861 SNP_101329_103A/G 1.425491 0.9231681 1.544130 0.122556893 SNP_101329_103G/G 5.214126 NaN NaN NaN -------------------------------------------------------- *** SNP_176851_201 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.998 1.399 1.428 0.153 SNP_176851_201C/T 1.763 1.717 1.026 0.305 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9366 0.3651 -2.565 0.0103 * SNP_176851_201C/T -12.0971 3616.5318 -0.003 0.9973 -------------------------------------------------------- *** SNP_176851_1011 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7204162 0.9586087 2.8378796 0.00454143 SNP_176851_1011C/T -0.3831065 0.5462683 -0.7013156 0.48310608 SNP_176851_1011T/T -12.2609143 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8314161 0.3649086 -2.2784231 0.02270138 SNP_176851_1011C/T -0.7877467 1.7862807 -0.4409983 0.65921423 SNP_176851_1011T/T 4.9651551 NaN NaN NaN -------------------------------------------------------- *** SNP_114449_398 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.2715728 0.9983377 3.277020 0.001049088 SNP_114449_398C/A -0.7736207 0.5224979 -1.480620 0.138707937 SNP_114449_398C/C -0.6191119 0.4710846 -1.314227 0.188769973 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8450639 0.6798281 -1.2430553 0.2138475 SNP_114449_398C/A -0.1595516 1.0290453 -0.1550482 0.8767833 SNP_114449_398C/C -0.3640245 0.9313370 -0.3908623 0.6958990 -------------------------------------------------------- *** SNP_271499_1357 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5584872 0.9485476 2.6972681 0.006991097 SNP_271499_1357A/G 0.2251497 0.3476251 0.6476798 0.517192097 SNP_271499_1357G/G -0.7755934 0.7444995 -1.0417649 0.297520676 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.7966035 0.4260841 -1.869592160 0.06154047 SNP_271499_1357A/G -0.3514326 0.6660406 -0.527644433 0.59774615 SNP_271499_1357G/G -14.5912271 4099.3139912 -0.003559431 0.99715999 -------------------------------------------------------- *** SNP_239007_161 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1671630 1.0218223 2.1208805 0.03393186 SNP_239007_161G/A -0.4415004 0.4763434 -0.9268532 0.35400277 SNP_239007_161G/G 0.7827342 0.5699561 1.3733235 0.16965179 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.5982974 3228.398 -0.005141342 0.9958978 SNP_239007_161G/A 0.3438782 NaN NaN NaN SNP_239007_161G/G 15.4262931 3228.398 0.004778312 0.9961875 -------------------------------------------------------- *** SNP_239007_528 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5098968 0.9814571 2.5573170 0.01054831 SNP_239007_528A/G 0.5915422 0.7452970 0.7936999 0.42737013 SNP_239007_528G/G -11.0690583 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.021631 0.3815606 -2.677506 0.007417246 SNP_239007_528A/G 1.123823 0.6795911 1.653676 0.098193377 SNP_239007_528G/G 3.251291 NaN NaN NaN -------------------------------------------------------- *** SNP_244860_1665 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.72535649 0.9697258 2.81044025 0.004947377 SNP_244860_1665C/T -0.51323532 0.5181068 -0.99059745 0.321882181 SNP_244860_1665T/T -0.01441943 0.5827375 -0.02474429 0.980258925 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9555303 0.5388236 -1.7733639 0.07616843 SNP_244860_1665C/T -2.0699286 6.1010221 -0.3392757 0.73440204 SNP_244860_1665T/T 0.2689425 0.9560209 0.2813144 0.77846925 -------------------------------------------------------- *** SNP_138885_311 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.43470681 1.0213993 2.38369727 0.0171397 SNP_138885_311C/T 0.21859293 0.3619376 0.60395200 0.5458756 SNP_138885_311T/T 0.01199396 0.3907508 0.03069466 0.9755130 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.74898970 0.4546651 -1.647343651 0.09948743 SNP_138885_311C/T -0.03379155 0.6141928 -0.055017824 0.95612426 SNP_138885_311T/T -16.50557646 3465.0481523 -0.004763448 0.99619933 -------------------------------------------------------- *** SNP_251880_684 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1406883 1.0425870 2.053247 0.04004866 SNP_251880_684C/T 0.6564152 0.3559698 1.844020 0.06518029 SNP_251880_684T/T 1.3114929 0.5989413 2.189685 0.02854708 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.3559028 0.8285237 -1.6365287 0.1017290 SNP_251880_684C/T 0.6915199 0.8882491 0.7785202 0.4362624 SNP_251880_684T/T 1.6346780 1.1764934 1.3894494 0.1646961 -------------------------------------------------------- *** SNP_251880_2079 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.41971713 0.9443258 2.56237525 0.010395893 SNP_251880_2079C/T 0.01386145 0.4429548 0.03129315 0.975035752 SNP_251880_2079T/T 1.99299870 0.6362842 3.13224625 0.001734743 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -2.041850 2.142425 -0.9530555 0.3405619 SNP_251880_2079C/T -9.237258 NaN NaN NaN SNP_251880_2079T/T 1.347606 2.467878 0.5460587 0.5850256 -------------------------------------------------------- *** SNP_251880_2352 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.768102 1.3685215 2.753411 0.005897786 SNP_251880_2352G/A -2.065301 1.0442683 -1.977749 0.047956998 SNP_251880_2352G/G -1.187600 0.9768981 -1.215684 0.224105220 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.831216 4517.023 -3.726175e-03 0.9970269 SNP_251880_2352G/A -5.839749 114790.806 -5.087296e-05 0.9999594 SNP_251880_2352G/G 15.945887 4517.023 3.530176e-03 0.9971833 -------------------------------------------------------- *** SNP_622808_242 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.188188 1.847762 2.2666275 0.02341299 SNP_622808_242G/A -1.628130 1.648493 -0.9876476 0.32332529 SNP_622808_242G/G -1.677237 1.644935 -1.0196369 0.30790071 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.302946 1.56896 0.8304523 0.4062831 SNP_622808_242G/A -2.290545 1.81123 -1.2646349 0.2060022 SNP_622808_242G/G -2.268251 1.61978 -1.4003450 0.1614100 -------------------------------------------------------- *** SNP_193618_387 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.47929009 0.9837204 2.52032001 0.01172482 SNP_193618_387C/T 0.03835499 0.3847837 0.09967936 0.92059888 SNP_193618_387T/T 0.66953026 0.5304237 1.26225550 0.20685686 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.3479276 0.6168184 -2.1852909 0.02886752 SNP_193618_387C/T 0.5242537 0.7956531 0.6588974 0.50996168 SNP_193618_387T/T 1.7796915 0.8472297 2.1006009 0.03567601 -------------------------------------------------------- *** SNP_417237_213 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5625161 0.9683543 2.6462590 0.008138748 SNP_417237_213C/T 0.1071181 0.3652542 0.2932699 0.769315842 SNP_417237_213T/T -0.2013947 0.4694240 -0.4290251 0.667904968 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.89927337 0.4519591 -1.98972286 0.04662147 SNP_417237_213C/T 0.06111386 0.6405368 0.09541038 0.92398887 SNP_417237_213T/T -15.21838401 4017.8214611 -0.00378772 0.99697784 -------------------------------------------------------- *** SNP_417237_294 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.8634923 1.0619132 1.754844 0.07928595 SNP_417237_294A/G 0.7686045 0.3520217 2.183401 0.02900630 SNP_417237_294G/G 0.7233257 0.4403379 1.642660 0.10045320 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -12.20800 4425.099 -0.002758807 0.9977988 SNP_417237_294A/G 11.21356 4425.098 0.002534081 0.9979781 SNP_417237_294G/G 11.74037 4425.098 0.002653131 0.9978831 -------------------------------------------------------- *** SNP_343265_177 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.547 2.738 1.660 0.0968 . SNP_343265_177G/G -1.941 2.649 -0.733 0.4638 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.298 2.291 0.567 0.571 SNP_343265_177G/G -2.190 2.305 -0.950 0.342 -------------------------------------------------------- *** SNP_343265_423 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9792 1.0733 2.776 0.00551 ** SNP_343265_423G/G -0.4875 0.5484 -0.889 0.37400 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -17.17 3302.93 -0.005 0.996 SNP_343265_423G/G 16.28 3302.93 0.005 0.996 -------------------------------------------------------- *** SNP_194809_624 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3434211 1.0107340 2.318534 0.0204203183 SNP_194809_624A/G 0.6510343 0.3824974 1.702062 0.0887437305 SNP_194809_624G/G 2.4744139 0.5236164 4.725624 0.0000022941 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8979448 0.4056625 -2.213526861 0.02686134 SNP_194809_624A/G -0.2095345 0.7663355 -0.273424023 0.78452729 SNP_194809_624G/G -15.9361407 4523.5064071 -0.003522962 0.99718909 -------------------------------------------------------- *** SNP_194809_1116 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7736737 1.1315020 2.4513203 0.01423332 SNP_194809_1116G/A -0.1582405 0.5807476 -0.2724773 0.78525506 SNP_194809_1116G/G -0.5842173 0.6031945 -0.9685389 0.33277531 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.2345846 1.392073 -0.8868676 0.3751502 SNP_194809_1116G/A 0.4425178 1.440087 0.3072855 0.7586261 SNP_194809_1116G/G 0.1744287 1.495340 0.1166481 0.9071389 -------------------------------------------------------- *** SNP_373156_174 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1997114 1.1472654 1.91735186 0.05519325 SNP_373156_174T/C 0.7073615 0.6838135 1.03443642 0.30093219 SNP_373156_174T/T 0.0262597 0.7274331 0.03609912 0.97120332 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.4343855 2.087551 -0.6871140 0.4920109 SNP_373156_174T/C 1.0745004 2.098524 0.5120267 0.6086323 SNP_373156_174T/T -0.6946516 2.620603 -0.2650732 0.7909531 -------------------------------------------------------- *** SNP_373156_509 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9644043 1.365686 2.1706343 0.02995883 SNP_373156_509G/A -0.6592703 1.182751 -0.5574042 0.57725126 SNP_373156_509G/G -0.4565460 1.097444 -0.4160087 0.67740364 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -15.53284 3406.855 -0.004559289 0.9963622 SNP_373156_509G/A 14.34616 3406.857 0.004210968 0.9966401 SNP_373156_509G/G 14.63678 3406.855 0.004296273 0.9965721 -------------------------------------------------------- *** SNP_397528_23 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.45136837 1.0591143 2.3145456 0.02063781 SNP_397528_23A/G 0.13311765 0.4315009 0.3084992 0.75770255 SNP_397528_23G/G 0.05955895 0.4926137 0.1209040 0.90376711 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1714184 0.7419996 -1.5787319 0.1143976 SNP_397528_23A/G 0.6561367 0.8293862 0.7911111 0.4288791 SNP_397528_23G/G -0.5320824 1.3111756 -0.4058056 0.6848855 -------------------------------------------------------- *** SNP_201987_235 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.8404 1.2748 3.013 0.00259 ** SNP_201987_235G/G -1.4362 0.8153 -1.762 0.07814 . Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.3722 1.3117 0.284 0.777 SNP_201987_235G/G -1.3841 1.3621 -1.016 0.310 -------------------------------------------------------- *** SNP_201987_732 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.2229837 1.2858519 1.7288023 0.08384448 SNP_201987_732G/A 0.2655771 0.8663314 0.3065536 0.75918314 SNP_201987_732G/G 0.3480571 0.8597624 0.4048294 0.68560290 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1629043 1.946367 -0.5974744 0.5501907 SNP_201987_732G/A 0.5294616 1.977365 0.2677611 0.7888832 SNP_201987_732G/G -0.2249550 2.012164 -0.1117976 0.9109839 -------------------------------------------------------- *** SNP_201987_837 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5778743 0.9736450 2.6476532 0.008105263 SNP_201987_837C/T -0.1281435 0.4924367 -0.2602233 0.794691541 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8517364 0.3285001 -2.592804454 0.009519688 SNP_201987_837C/T -17.2042469 4568.0156127 -0.003766241 0.996994982 -------------------------------------------------------- *** SNP_201987_954 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9498625 1.1074581 2.6636336 0.007730172 SNP_201987_954G/A -0.3617331 0.6065445 -0.5963835 0.550919064 SNP_201987_954G/G -0.4612309 0.5632904 -0.8188156 0.412891644 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9003479 0.8724506 -1.0319758 0.3020835 SNP_201987_954G/A 0.5052451 0.9904876 0.5100974 0.6099832 SNP_201987_954G/G -0.3971572 1.0491538 -0.3785500 0.7050220 -------------------------------------------------------- *** SNP_201987_1128 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.567930 1.357391 1.155106 0.2480471 SNP_201987_1128G/A 1.545953 1.288881 1.199454 0.2303516 SNP_201987_1128G/G 1.245608 1.223665 1.017933 0.3087100 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -10.047883 3327.573 -0.003019583 0.9975907 SNP_201987_1128G/A 10.684305 3327.573 0.003210840 0.9974381 SNP_201987_1128G/G 8.977856 3327.573 0.002698019 0.9978473 -------------------------------------------------------- *** SNP_324461_93 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7414 0.9087 3.017 0.00256 ** SNP_324461_93C/T -1.4353 1.1485 -1.250 0.21141 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9403 0.3706 -2.537 0.0112 * SNP_324461_93C/T -11.5486 4278.9941 -0.003 0.9978 -------------------------------------------------------- *** SNP_297458_264 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.46148649 1.0993014 2.2391370 0.0251470 SNP_297458_264T/C -0.05918226 0.4071119 -0.1453710 0.8844180 SNP_297458_264T/T -0.28354489 0.4155020 -0.6824153 0.4949764 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -18.31723 4099.971 -0.004467650 0.9964353 SNP_297458_264T/C 17.77855 4099.971 0.004336262 0.9965402 SNP_297458_264T/T 17.17534 4099.971 0.004189137 0.9966576 -------------------------------------------------------- *** SNP_199628_132 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.1970708 1.0692114 2.99012 0.002788676 SNP_199628_132G/G -0.6937134 0.5431562 -1.27719 0.201535336 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -18.01051 4256.048 -0.004231744 0.9966236 SNP_199628_132G/G 17.14999 4256.048 0.004029557 0.9967849 -------------------------------------------------------- *** SNP_199628_214 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.8250888 1.2660342 2.2314475 0.0256515 SNP_199628_214T/A -0.9010121 0.9051048 -0.9954783 0.3195037 SNP_199628_214T/T -0.3058800 0.7903196 -0.3870332 0.6987316 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.52117 3821.497 -0.004323219 0.9965506 SNP_199628_214T/A 14.13886 3821.501 0.003699817 0.9970480 SNP_199628_214T/T 15.79032 3821.497 0.004131971 0.9967032 -------------------------------------------------------- *** SNP_199628_248 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5054244 1.0237454 2.4473120 0.01439262 SNP_199628_248C/T -0.4360681 0.6628399 -0.6578784 0.51061625 SNP_199628_248T/T -11.4218816 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9356401 0.369182 -2.534360206 0.01126529 SNP_199628_248C/T -15.7212174 10573.334757 -0.001486874 0.99881365 SNP_199628_248T/T 3.5745662 NaN NaN NaN -------------------------------------------------------- *** SNP_254919_291 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6759708 1.0979559 2.4372297 0.01480027 SNP_254919_291T/C -0.2922131 0.6623724 -0.4411614 0.65909619 SNP_254919_291T/T -0.1417946 0.6363842 -0.2228128 0.82368117 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.2304815 1.357404 -0.9064962 0.3646733 SNP_254919_291T/C 0.4139116 1.475099 0.2805991 0.7790179 SNP_254919_291T/T 0.1838241 1.408505 0.1305101 0.8961629 -------------------------------------------------------- *** SNP_254919_297 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.512373 1.363503 3.309397 0.0009349707 SNP_254919_297G/A -2.604284 1.206798 -2.158011 0.0309269785 SNP_254919_297G/G -2.265890 1.048286 -2.161518 0.0306553440 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -15.83820 3970.665 -0.003988804 0.9968174 SNP_254919_297G/A 15.27338 3970.667 0.003846552 0.9969309 SNP_254919_297G/G 14.80773 3970.666 0.003729280 0.9970245 -------------------------------------------------------- *** SNP_201724_525 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.41462963 1.1016676 2.19179503 0.0283943102 SNP_201724_525G/T -0.02416148 0.8320765 -0.02903757 0.9768346241 SNP_201724_525T/T 3.54913541 1.0362185 3.42508412 0.0006146091 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9737662 0.3820778 -2.5486073 0.010815401 SNP_201724_525G/T 0.2280453 1.3830208 0.1648893 0.869031135 SNP_201724_525T/T 2.4126004 0.8908763 2.7081206 0.006766543 -------------------------------------------------------- *** SNP_353771_483 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6709752 0.9632006 2.7730206 0.005553861 SNP_353771_483C/T 0.5472373 4.1621794 0.1314786 0.895396749 SNP_353771_483T/T 0.4171356 1.1891434 0.3507866 0.725748442 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.951517 0.3747346 -2.539175507 0.01111141 SNP_353771_483C/T 2.754839 3.8249138 0.720235564 0.47137997 SNP_353771_483T/T -11.017230 1343.6731026 -0.008199338 0.99345795 -------------------------------------------------------- *** SNP_26438_387 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.0649983 1.0688607 1.9319621 5.336418e-02 SNP_26438_387C/T 0.3432864 0.3541808 0.9692405 3.324252e-01 SNP_26438_387T/T 1.8067938 0.3695806 4.8887676 1.014692e-06 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8569591 0.4904608 -1.7472530 0.08059346 SNP_26438_387C/T -0.1561207 0.6819431 -0.2289351 0.81891934 SNP_26438_387T/T -0.8766761 1.1882794 -0.7377693 0.46065463 -------------------------------------------------------- *** SNP_329556_606 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.513825178 1.0140839 2.478912385 0.01317837 SNP_329556_606A/T 0.003319175 0.5690308 0.005833032 0.99534594 SNP_329556_606T/T -12.184051527 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.010844 0.4067472 -2.485189 0.01294825 SNP_329556_606A/T 0.316908 0.9757111 0.324797 0.74533474 SNP_329556_606T/T 4.024332 NaN NaN NaN -------------------------------------------------------- *** SNP_380699_727 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.9732187 1.0587782 2.8081600 0.004982547 SNP_380699_727G/G -0.4685447 0.4694283 -0.9981178 0.318222239 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8186497 0.7428864 -1.1019852 0.2704681 SNP_380699_727G/G -0.1944292 0.8463478 -0.2297273 0.8183037 -------------------------------------------------------- *** SNP_246173_255 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.3213 1.0969 3.028 0.00246 ** SNP_246173_255G/G -0.9903 0.5479 -1.808 0.07068 . Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.6434 0.7440 -0.865 0.387 SNP_246173_255G/G -0.2985 0.8139 -0.367 0.714 -------------------------------------------------------- *** SNP_242486_426 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.0201715 1.3226457 1.5273716 0.1266686 SNP_242486_426G/A 0.5827919 0.9708668 0.6002800 0.5483196 SNP_242486_426G/G 0.6067394 0.9749764 0.6223119 0.5337368 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1309463 2.394936 -0.47222400 0.6367669 SNP_242486_426G/A 0.2328079 2.421476 0.09614297 0.9234070 SNP_242486_426G/G 0.1214594 2.427681 0.05003102 0.9600977 -------------------------------------------------------- *** SNP_230664_231 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.743127 0.8949563 3.0650959 0.002176002 SNP_230664_231C/T -1.714140 4.8525847 -0.3532427 0.723906500 SNP_230664_231T/T -12.556793 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1035334 0.4014133 -2.74912040 0.005975543 SNP_230664_231C/T -0.4951039 24.4861684 -0.02021974 0.983868082 SNP_230664_231T/T 3.9770532 NaN NaN NaN -------------------------------------------------------- *** SNP_437039_207 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3465261 1.1058734 2.1218759 0.03384816 SNP_437039_207G/A 0.2154697 0.5769849 0.3734409 0.70882036 SNP_437039_207G/G 0.2682264 0.5979169 0.4486015 0.65371913 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.96801932 1.052393 -0.91982710 0.3576631 SNP_437039_207G/A 0.02024088 1.131182 0.01789356 0.9857238 SNP_437039_207G/G 0.04620541 1.157269 0.03992624 0.9681519 -------------------------------------------------------- *** SNP_278191_379 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3562368 1.0135899 2.3246450 0.02009095 SNP_278191_379C/T 0.2295684 0.4549047 0.5046517 0.61380347 SNP_278191_379T/T 0.5015293 0.5207303 0.9631268 0.33548387 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.691309 1.426601 -1.1855519 0.2357993 SNP_278191_379C/T 0.728485 1.453934 0.5010441 0.6163401 SNP_278191_379T/T 1.389309 1.488296 0.9334893 0.3505674 -------------------------------------------------------- *** SNP_278191_558 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 4.654 2.781 1.673 0.0943 . SNP_278191_558C/C -2.197 2.676 -0.821 0.4116 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.079 2.438 0.442 0.658 SNP_278191_558C/C -2.016 2.455 -0.821 0.412 -------------------------------------------------------- *** SNP_43500_219 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4121 2.0831 1.158 0.247 SNP_43500_219C/C 0.1859 1.8462 0.101 0.920 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 0.05429 2.58739 0.021 0.983 SNP_43500_219C/C -1.11504 2.61542 -0.426 0.670 -------------------------------------------------------- *** SNP_43500_360 *** Model encountered the complete separation problem. Could not be fitted, as only two genotypes were present. -------------------------------------------------------- *** SNP_43500_562 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1044961 1.2403424 1.6967057 0.08975231 SNP_43500_562C/G 0.5600032 0.7340567 0.7628882 0.44553006 SNP_43500_562G/G 0.2277463 0.7557707 0.3013431 0.76315284 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -4.231718 29.67865 -0.14258456 0.8866183 SNP_43500_562C/G 3.878866 29.66278 0.13076542 0.8959609 SNP_43500_562G/G 2.450382 29.65178 0.08263862 0.9341389 -------------------------------------------------------- *** SNP_43500_642 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4524493 1.004675 2.4410378 0.01464512 SNP_43500_642C/T 0.3893636 0.623958 0.6240221 0.53261307 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9874581 0.3861653 -2.5570864 0.0105553 SNP_43500_642C/T -0.7476467 1.6815708 -0.4446121 0.6566001 -------------------------------------------------------- *** SNP_43500_821 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.0576480 1.0324274 2.961611 0.003060346 SNP_43500_821C/C -0.5382954 0.4494876 -1.197576 0.231082268 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.2894113 0.8120918 -1.5877655 0.1123394 SNP_43500_821C/C 0.3495318 0.8867750 0.3941606 0.6934624 -------------------------------------------------------- *** SNP_281059_636 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.412711 1.1533475 1.224879 0.22062097 SNP_281059_636G/G 1.183013 0.6095573 1.940774 0.05228568 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -14.84225 3678.124 -0.004035276 0.9967803 SNP_281059_636G/G 13.92637 3678.124 0.003786269 0.9969790 -------------------------------------------------------- *** SNP_281059_675 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.738e+00 7.894e-01 3.469 0.000523 *** SNP_281059_675C/T -1.823e+01 3.737e+03 -0.005 0.996109 SNP_281059_675T/T -2.085e+01 1.067e+05 0.000 0.999844 -------------------------------------------------------- *** SNP_286191_456 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4064254 1.0902388 2.2072461 0.02729687 SNP_286191_456C/T 0.3944500 0.9017413 0.4374315 0.66179847 SNP_286191_456T/T 0.7461952 1.0583758 0.7050380 0.48078659 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9665075 0.3734269 -2.588210553 0.009647599 SNP_286191_456C/T 0.8939961 1.1024439 0.810922118 0.417410398 SNP_286191_456T/T -12.7977928 3747.1522244 -0.003415338 0.997274960 -------------------------------------------------------- *** SNP_152082_816 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.1560 1.4807 1.456 0.145 SNP_152082_816T/T 0.4598 1.2362 0.372 0.710 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -5.537 191.380 -0.029 0.977 SNP_152082_816T/T 4.625 191.352 0.024 0.981 -------------------------------------------------------- *** SNP_219405_317 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.6611884 1.357494 1.2237165 0.2210592 SNP_219405_317G/G 0.9599198 1.051812 0.9126344 0.3614349 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.50015 4319.939 -0.003819534 0.9969525 SNP_219405_317G/G 15.62724 4319.939 0.003617468 0.9971137 -------------------------------------------------------- *** SNP_182044_141 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4782790 1.0316241 2.4023082 0.01629198 SNP_182044_141C/T 0.3275378 0.3962957 0.8264985 0.40852137 SNP_182044_141T/T 1.0503566 0.6604699 1.5903172 0.11176332 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9109347 0.3717039 -2.450699741 0.01425788 SNP_182044_141C/T 0.4708342 0.6395305 0.736218515 0.46159773 SNP_182044_141T/T -16.0246572 4302.3050336 -0.003724668 0.99702815 -------------------------------------------------------- ***SNP_306701_582 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4363080 1.0366789 2.3501086 1.876793e-02 SNP_306701_582A/G 0.2660327 0.6766809 0.3931435 6.942135e-01 SNP_306701_582G/G 4.2096011 1.0688370 3.9384876 8.199684e-05 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9140999 0.3691172 -2.4764489 0.0132696609 SNP_306701_582A/G -0.3954213 1.3177708 -0.3000683 0.7641250270 SNP_306701_582G/G 3.8789864 1.0920618 3.5519842 0.0003823378 -------------------------------------------------------- *** SNP_306701_957 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.0725580 1.0278780 2.016346 0.04376379 SNP_306701_957C/T 0.5391524 0.3059501 1.762223 0.07803162 SNP_306701_957T/T 0.7002226 0.3614513 1.937253 0.05271442 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.94475 4433.502 -0.003821979 0.9969505 SNP_306701_957C/T 16.33598 4433.502 0.003684668 0.9970601 SNP_306701_957T/T 16.37696 4433.502 0.003693911 0.9970527 -------------------------------------------------------- *** SNP_343154_267 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3055 0.9149 2.520 0.0117 * SNP_343154_267T/C 0.2611 0.2336 1.118 0.2637 SNP_343154_267T/T 0.3066 0.2954 1.038 0.2993 -------------------------------------------------------- *** SNP_343154_386 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5355192 0.9289414 2.7294715 0.006343593 SNP_343154_386C/T 0.2857258 0.3459441 0.8259305 0.408843535 SNP_343154_386T/T -1.5385182 1.0378265 -1.4824426 0.138222555 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.7517715 0.4428737 -1.697485343 0.08960494 SNP_343154_386C/T -0.6491904 0.7054669 -0.920227954 0.35745365 SNP_343154_386T/T -12.9008321 3631.1904243 -0.003552783 0.99716530 -------------------------------------------------------- *** SNP_343154_831 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.8282 1.4874 1.901 0.0572 . SNP_343154_831G/G -0.3987 1.1977 -0.333 0.7392 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -13.11 3518.91 -0.004 0.997 SNP_343154_831G/G 12.06 3518.91 0.003 0.997 -------------------------------------------------------- ***SNP_343154_1302 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.0038 1.4214 1.41 0.159 SNP_343154_1302T/T 0.6831 1.1988 0.57 0.569 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -12.59 3797.87 -0.003 0.997 SNP_343154_1302T/T 11.62 3797.87 0.003 0.998 -------------------------------------------------------- *** SNP_343154_1452 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) -14.00 3466.84 -0.004 0.997 SNP_343154_1452G/A 16.41 3466.84 0.005 0.996 SNP_343154_1452G/G 16.54 3466.84 0.005 0.996 -------------------------------------------------------- *** SNP_343154_1475 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.469743261 1.0494844 2.353292002 0.01860802 SNP_343154_1475C/T -0.003876157 0.8133876 -0.004765449 0.99619774 SNP_343154_1475T/T -11.314251493 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9926872 0.3927906 -2.5272681 0.01149537 SNP_343154_1475C/T -0.1827822 1.6264185 -0.1123833 0.91051951 SNP_343154_1475T/T 3.3796869 NaN NaN NaN -------------------------------------------------------- *** SNP_343154_1558 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6139809 1.0028695 2.6065016 0.009147239 SNP_343154_1558C/T -0.2666215 0.7118531 -0.3745457 0.707998370 SNP_343154_1558T/T 0.7780302 1.7101385 0.4549515 0.649144098 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9965205 0.3960813 -2.5159496 0.01187122 SNP_343154_1558C/T 0.1650411 1.2997917 0.1269750 0.89896017 SNP_343154_1558T/T 0.8994248 2.3262567 0.3866404 0.69902244 -------------------------------------------------------- *** SNP_260893_408 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.6382544 1.388882 2.6195569 0.008804407 SNP_260893_408G/A -0.6792923 1.081233 -0.6282569 0.529835649 SNP_260893_408G/G -1.1355062 1.058509 -1.0727409 0.283387385 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.58563 3995.07 -0.004151525 0.9966876 SNP_260893_408G/A 15.68687 3995.07 0.003926556 0.9968671 SNP_260893_408G/G 15.68129 3995.07 0.003925159 0.9968682 -------------------------------------------------------- *** SNP_260893_819 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) -12.134 3758.315 -0.003 0.997 SNP_260893_819C/A -9.158 163740.618 0.000 1.000 SNP_260893_819C/C 14.670 3758.315 0.004 0.997 -------------------------------------------------------- *** SNP_260893_945 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.59081435 1.0749052 2.4102724 0.01594062 SNP_260893_945T/G -0.14934462 0.5411393 -0.2759818 0.78256204 SNP_260893_945T/T 0.08189439 0.5418560 0.1511368 0.87986781 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9631520 0.8801229 -1.0943380 0.2738068 SNP_260893_945T/G -0.2437926 1.0570121 -0.2306432 0.8175920 SNP_260893_945T/T 0.2114370 0.9706762 0.2178244 0.8275659 -------------------------------------------------------- *** SNP_260893_961 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.529648 0.9750713 2.5943206 0.009477806 SNP_260893_961G/T 0.429026 0.7070799 0.6067575 0.544011872 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.05177859 0.4016877 -2.61839894 0.008834346 SNP_260893_961G/T 0.03183334 1.4104502 0.02256963 0.981993572 -------------------------------------------------------- *** SNP_198248_1210 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6520158 0.9598913 2.7628294 0.005730271 SNP_198248_1210C/G -0.7200716 0.8597415 -0.8375444 0.402286642 SNP_198248_1210G/G -17.9625876 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9501592 0.3668083 -2.59034284 0.009588039 SNP_198248_1210C/G -14.6569294 4397.7166172 -0.00333285 0.997340775 SNP_198248_1210G/G 6.3643335 NaN NaN NaN -------------------------------------------------------- *** SNP_198248_1498 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.64360209 0.9897395 2.67100808 0.007562383 SNP_198248_1498G/A -0.03422746 0.3655227 -0.09363976 0.925395325 SNP_198248_1498G/G -0.26372632 0.6016303 -0.43835277 0.661130581 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9922819 0.5303619 -1.8709524 0.06135167 SNP_198248_1498G/A 0.1716614 0.6787275 0.2529165 0.80033276 SNP_198248_1498G/G -0.2611048 1.4227399 -0.1835226 0.85438803 -------------------------------------------------------- *** SNP_428039_473 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.2008771 1.1579974 1.9005889 0.05735588 SNP_428039_473G/A 0.5618837 0.7963311 0.7055905 0.48044284 SNP_428039_473G/G 0.2801810 0.7865597 0.3562107 0.72168277 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.21874 3797.175 -0.004271264 0.9965920 SNP_428039_473G/A 15.77619 3797.175 0.004154719 0.9966850 SNP_428039_473G/G 15.12184 3797.175 0.003982392 0.9968225 -------------------------------------------------------- *** SNP_428039_659 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.4514068 0.9478698 2.586227 0.00970329 SNP_428039_659C/T 0.5078454 0.3862557 1.314791 0.18858027 SNP_428039_659T/T 0.8152677 0.6711796 1.214679 0.22448858 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.1043802 0.6463633 -1.70860603 0.08752395 SNP_428039_659C/T 0.2695701 0.7747481 0.34794548 0.72788113 SNP_428039_659T/T -0.1385848 1.4635370 -0.09469168 0.92455972 -------------------------------------------------------- *** SNP_428039_1406 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.7089566 1.0679763 2.536532 0.01119564 SNP_428039_1406C/T -0.7820472 0.4056232 -1.928014 0.05385340 SNP_428039_1406T/T -1.3560428 0.4850693 -2.795565 0.00518091 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.4789811 0.267274 -1.792097862 0.07311729 SNP_428039_1406C/T -1.5293574 1.777197 -0.860544673 0.38948887 SNP_428039_1406T/T -16.0259853 4416.574292 -0.003628601 0.99710480 -------------------------------------------------------- *** SNP_428039_1687 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6205657 0.9673972 2.708883 0.006751015 SNP_428039_1687A/G -0.8769858 0.5856493 -1.497459 0.134273840 SNP_428039_1687G/G 1.1882145 0.9768903 1.216323 0.223861796 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.8856195 3.398629e-01 -2.605814185 0.009165617 SNP_428039_1687A/G -15.3646665 4.627020e+03 -0.003320640 0.997350518 SNP_428039_1687G/G -17.8715736 1.183240e+04 -0.001510393 0.998794881 -------------------------------------------------------- *** SNP_128936_282 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.5803477 1.0673846 1.480579 0.138718679 SNP_128936_282C/T 0.8236181 0.3996859 2.060663 0.039335161 SNP_128936_282T/T 1.1953450 0.3875814 3.084114 0.002041596 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -15.56750 3200.812 -0.004863611 0.9961194 SNP_128936_282C/T 14.62619 3200.812 0.004569526 0.9963541 SNP_128936_282T/T 14.95671 3200.812 0.004672787 0.9962717 -------------------------------------------------------- *** SNP_358374_195 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3622054 1.0549488 2.239166 0.02514512 SNP_358374_195C/T 0.7142121 0.6069993 1.176628 0.23934417 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.9779339 0.3882974 -2.518517798 0.01178499 SNP_358374_195C/T -16.1331980 4088.1674839 -0.003946315 0.99685130 -------------------------------------------------------- *** SNP_271698_251 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 1.6769448 1.0971314 1.528481 0.12639307 SNP_271698_251G/A 0.8653278 0.3536952 2.446535 0.01442367 SNP_271698_251G/G 0.8610332 0.3581563 2.404071 0.01621361 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -17.18106 4552.206 -0.003774228 0.9969886 SNP_271698_251G/A 16.78829 4552.206 0.003687947 0.9970575 SNP_271698_251G/G 16.30555 4552.206 0.003581901 0.9971421 -------------------------------------------------------- *** SNP_341837_617 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5561085 0.9735878 2.6254524 0.00865339 SNP_341837_617C/T 0.1618041 0.3597018 0.4498285 0.65283411 SNP_341837_617T/T -0.9184929 0.5799746 -1.5836779 0.11326705 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -0.87710043 0.4827926 -1.816722870 0.06925956 SNP_341837_617C/T -0.03241159 0.6281701 -0.051596843 0.95884993 SNP_341837_617T/T -14.64193349 4068.7829047 -0.003598603 0.99712874 -------------------------------------------------------- ***SNP_341837_768 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6688 0.7975 3.346 0.000819 *** SNP_341837_768C/T -16.2828 5392.5373 -0.003 0.997591 SNP_341837_768T/T -15.4363 4559.4449 -0.003 0.99729 -------------------------------------------------------- *** SNP_338193_2169 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.59621 1.40577 1.847 0.0648 . SNP_338193_2169G/G -0.06824 1.29207 -0.053 0.9579 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -16.11 4657.40 -0.003 0.997 SNP_338193_2169G/G 15.16 4657.40 0.003 0.997 -------------------------------------------------------- *** SNP_373029_222 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.5944477 1.0053375 2.5806733 0.009860786 SNP_373029_222C/T 0.1080965 0.3700684 0.2920988 0.770211118 SNP_373029_222T/T -0.3489738 0.8022891 -0.4349726 0.663582321 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.3359911 0.7217558 -1.8510294 0.06416532 SNP_373029_222C/T 0.4292251 0.8073204 0.5316664 0.59495708 SNP_373029_222T/T 0.9428674 1.4083898 0.6694648 0.50319902 -------------------------------------------------------- *** SNP_187211_199 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.6306 0.8139 3.232 0.00123 ** SNP_187211_199A/G -22.1422 96500.2994 0.000 0.99982 SNP_187211_199G/G -14.2246 4511.4538 -0.003 0.99748 -------------------------------------------------------- *** SNP_187211_1709 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) 2.3335089 0.9605328 2.4293902 0.01512425 SNP_187211_1709G/A 0.5493424 0.3966887 1.3848201 0.16610748 SNP_187211_1709G/G 0.2729254 0.7551744 0.3614071 0.71779517 Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.3710800 0.9985909 -1.3730148 0.1697478 SNP_187211_1709G/A 0.4423424 1.0405052 0.4251227 0.6707472 SNP_187211_1709G/G 0.8830454 1.3738332 0.6427603 0.5203797 -------------------------------------------------------- *** SNP_290940_132 *** Conditional model: Estimate Std. Error z value Pr(>|z|) (Intercept) -6.992263 NaN NaN NaN SNP_290940_132G/A -14.134575 NaN NaN NaN SNP_290940_132G/G 9.759059 NaN NaN NaN Zero-inflation model: Estimate Std. Error z value Pr(>|z|) (Intercept) 3.833196 NaN NaN NaN SNP_290940_132G/A 7.411394 NaN NaN NaN SNP_290940_132G/G -4.783297 NaN NaN NaN --------------------------------------------------------