# Investigation File generated for Scientific Data with Investigation File Authoring Tool version 0.1.0 on 04/12/2017 - This metadata file is CC0
ONTOLOGY SOURCE REFERENCE
Term Source Name	NCBITAXON	GAZ	ENVO	UO	BAO	OBI	ERO	CHEBI	EFO
Term Source File	http://data.bioontology.org/ontologies/NCBITAXON	http://data.bioontology.org/ontologies/GAZ	http://data.bioontology.org/ontologies/ENVO	http://data.bioontology.org/ontologies/UO	http://data.bioontology.org/ontologies/BAO	http://data.bioontology.org/ontologies/OBI	http://data.bioontology.org/ontologies/ERO	http://data.bioontology.org/ontologies/CHEBI	http://data.bioontology.org/ontologies/EFO
Term Source Version	2016AB	$Revision: 1.512 $	unknown	2	18/08/2014	2014-08-18	2013-08-02	153	2.89
Term Source Description	National Center for Biotechnology Information (NCBI) Organismal Classification	Gazetteer	Environment Ontology	Units of Measurement Ontology	BioAssay Ontology	Ontology for Biomedical Investigations	Eagle-I Research Resource Ontology	Chemical Entities of Biological Interest Ontology	Experimental Factor Ontology
INVESTIGATION
Investigation Identifier
Investigation Title
Investigation Description
Investigation Submission Date
Investigation Public Release Date
INVESTIGATION PUBLICATIONS
Investigation PubMed ID
Investigation Publication DOI
Investigation Publication Author List
Investigation Publication Title
Investigation Publication Status
Investigation Publication Status Term Accession Number
Investigation Publication Status Term Source REF
INVESTIGATION CONTACTS
Investigation Person Last Name
Investigation Person Mid Initials
Investigation Person First Name
Investigation Person Address
Investigation Person Phone
Investigation Person Fax
Investigation Person Email
Investigation Person Affiliation
Investigation Person Roles
Investigation Person Roles Term Accession Number
Investigation Person Roles Term Source REF
STUDY
Study Identifier	10.1038/sdata.2017.160
Study Title	A compendium of multi-omic sequence information from the Saanich                    Inlet water column
Study Submission Date	02/02/2017
Study Public Release Date	31/10/2017
Study Description	http://www.nature.com/articles/sdata2017160#abstract
Study File Name	s_study_Hallam.txt
Comment[Subject Keywords]	///;//;///;//;//
Comment[Manuscript Licence]	CC BY-4.0
Comment[Experimental Metadata Licence]	CC0
Comment[Supplementary Information File Name]		Supplementary Table S1	Supplementary Table S2
Comment[Supplementary Information File Type]	x-zip-compressed	vnd.openxmlformats-officedocument.spreadsheetml.sheet	vnd.openxmlformats-officedocument.spreadsheetml.sheet
Comment[Supplementary Information File URL]	http://www.nature.com/articles/sdata2017160#supplementary-information	http://www.nature.com/articles/sdata2017160#supplementary-information	http://www.nature.com/articles/sdata2017160#supplementary-information
Comment[Data Repository]	NCBI Sequence Read Archive;PRIDE
Comment[Data Record Accession]	SRP043213;PXD004433
Comment[Data Record URI]	https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP043213;https://www.ebi.ac.uk/pride/archive/projects/PXD004433
STUDY DESIGN DESCRIPTORS
Study Design Type	time series design	observation design	data integration objective
Study Design Type Term Accession Number	OBI:0500020	OBI:0300311	ERO:0100092
Study Design Type Term Source REF	OBI	OBI	ERO
STUDY PUBLICATIONS
Study PubMed ID	""	""
Study Publication DOI	doi:10.1111/j.1462-2920.2009.02058.x	doi:10.1038/s41467-017-01376-9
Study Publication Author List	""	""
Study Publication Title	""	""
Study Publication Status	published	published
Study Publication Status Term Accession Number		
Study Publication Status Term Source REF		
STUDY FACTORS
Study Factor Name	sampling depth	temporal sampling range	RNA tag
Study Factor Type	sampling depth	temporal_interval	protocol
Study Factor Type Term Accession Number	http://www.ifomis.org/bfo/1.1/span#TemporalInterval	OBI:0000272	
Study Factor Type Term Source REF	ERO	OBI	
STUDY ASSAYS
Study Assay Measurement Type	metagenomics analysis	transcription profiling assay	ribosomal RNA	protein sequencing by tandem mass spectrometry assay
Study Assay Measurement Type Term Accession Number	ERO:0000657	OBI:0000424	CHEBI:18111	OBI:0001923
Study Assay Measurement Type Term Source REF	ERO	OBI	CHEBI	OBI
Study Assay Technology Type	DNA sequencing	RNA sequencing	DNA sequencing	liquid chromatography-tandem mass spectrometry
Study Assay Technology Type Term Accession Number	OBI:0000626	OBI:0001177	OBI:0000626	CHMO:0000701
Study Assay Technology Type Term Source REF	OBI	OBI	OBI	OBI
Study Assay Technology Platform	""	""	""	""
Study Assay File Name	a_metagenomics_Hallam.txt	a_metatranscriptomics_Hallam.txt	a_ssRNA_Hallam.txt	a_metaproteomics_Hallam.txt
STUDY PROTOCOLS
Study Protocol Name	Environmental sampling	Environmental DNA, RNA and protein extraction	Environmental DNA and RNA sequencing	Environmental protein sequencing
Study Protocol Type	selection	sample preparation for assay	nucleic acid sequencing protocol	protein sequencing by tandem mass spectrometry assay
Study Protocol Type Term Accession Number	OBI:0001928	OBI:0000073	http://www.ebi.ac.uk/efo/EFO_0004170	OBI:0001923
Study Protocol Type Term Source REF	OBI	OBI	EFO	OBI
Study Protocol Description				
Study Protocol URI	""	""	""	""
Study Protocol Version				
Study Protocol Parameters Name	""	""	manufacturer; instrument	""
Study Protocol Parameters Name Term Accession Number	""	""	""	""
Study Protocol Parameters Name Term Source REF	""	""	""	""
Study Protocol Components Name	""	""	""	""
Study Protocol Components Type	""	""	""	""
Study Protocol Components Type Term Accession Number	""	""	""	""
Study Protocol Components Type Term Source REF	""	""	""	""
STUDY CONTACTS
Study Person Last Name	Hawley	Torres-Beltrán	Zaikova	Walsh	Mueller	Scofield	Kheirandish	Payne	Pakhomova	Bhatia	Shevchuk	Gies	Fairley	Malfatti	Norbeck	Brewer	Pasa-Tolic	del Rio	Suttle	Tringe	Hallam
Study Person First Name	Alyse K.	Mónica	Elena	David A.	Andreas	Melanie	Sam	Chris	Larysa	Maya	Olena	Esther A.	Diane	Stephanie A.	Angela D.	Heather M.	Ljiljana	Tijana Glavina	Curtis A.	Susannah	Steven J.
Study Person Mid Initials																					
Study Person Email	""	""	""	""	""	""	""	""	""	""	""	""	""	""	""	""	""	""	""	""	shallam@mail.ubc.ca
Study Person Phone																					
Study Person Fax																					
Study Person Address																					
Study Person Affiliation	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Biology, Georgetown University,                    Washington, District Of Columbia 20057,                    USA	Department of Biology, Concordia University,                    Montreal, Quebec, Canada H4B 1R6	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Earth, Ocean and Atmospheric Sciences, University of British                    Columbia, Vancouver,                    British Columbia, Canada                    V6T 1Z4	Earth, Ocean and Atmospheric Sciences, University of British                    Columbia, Vancouver,                    British Columbia, Canada                    V6T 1Z4	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Civil Engineering, University of British                    Columbia, Vancouver,                    British Columbia, Canada                    V6T 1Z4	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Energy Joint Genome Institute,                    Walnut Creek, California 94598, USA	Biological and Computational Sciences Division, Pacific                    Northwest National Laboratory, Richland, Washington                99352, USA	Biological and Computational Sciences Division, Pacific                    Northwest National Laboratory, Richland, Washington                99352, USA	Biological and Computational Sciences Division, Pacific                    Northwest National Laboratory, Richland, Washington                99352, USA	Department of Energy Joint Genome Institute,                    Walnut Creek, California 94598, USA	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3	Department of Energy Joint Genome Institute,                    Walnut Creek, California 94598, USA	Department of Microbiology and Immunology, University of                    British Columbia, Vancouver, British                    Columbia, Canada V63 1Z3
Study Person Roles																					
Study Person Roles Term Accession Number																					
Study Person Roles Term Source REF																					
Comment[Study Person ORCID]	0000-0002-3516-4043																				
Comment[Funder]																					
Comment[FundRef ID]																					
Comment[Funder Term Source REF]																					
Comment[Grant Identifier]																					
