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{"sheet":"Supplementary Table 3 Repeat El","index":0,"n_rows":55,"n_cols":4,"rows_kept":55,"merged":[[0,0,0,3]],"flags":["formulas_cached_only"]}
["Supplementary Table 3 : Summary of all repeat elements masked using RepeatMasker in the tilapia genome."]
[]
[]
["reference genome file name"," oreNil2.fa               "]
["sequences",5678]
["total length","927696114 bp  (816084674 bp excl N/X-runs)"]
["GC level",{"v":0.4042,"d":"40.42%"}]
["bases masked","112902001 bp ( 12.17 %)"]
[]
["Name Of Elements","Number of Elements","Length Occupied","Percentage of Genome"]
["Retroelements",206987,"53298936 bp",{"v":0.0575,"d":"5.75%"}]
["SINEs:",45918,"6640642 bp",{"v":0.0072,"d":"0.72%"}]
["Penelope",19438,"3546538 bp",{"v":0.0038,"d":"0.38%"}]
["LINEs:",137810,"38082122 bp",{"v":0.0411,"d":"4.11%"}]
["CRE/SLACS",0,"0 bp",{"v":0,"d":"0.00%"}]
["L2/CR1/Rex",67908,"18088450 bp",{"v":0.0195,"d":"1.95%"}]
["R1/LOA/Jockey",1600,"544687 bp",{"v":0.0006,"d":"0.06%"}]
["R2/R4/NeSL",7814,"3209574 bp",{"v":0.0035,"d":"0.35%"}]
["RTE/Bov-B",27784,"7239286 bp",{"v":0.0078,"d":"0.78%"}]
["L1/CIN4",10127,"4671606 bp",{"v":0.005,"d":"0.50%"}]
["LTR elements:",23259,"8576172 bp",{"v":0.0092,"d":"0.92%"}]
["BEL/Pao",2056,"1697223 bp",{"v":0.0018,"d":"0.18%"}]
["Ty1/Copia",241,"210799 bp",{"v":0.0002,"d":"0.02%"}]
["Gypsy/DIRS1",9455,"5445194 bp",{"v":0.0059,"d":"0.59%"}]
["Retroviral",8414,"953741 bp",{"v":0.001,"d":"0.10%"}]
["DNA transposons:",245024,"42830381 bp",{"v":0.0462,"d":"4.62%"}]
["hobo-Activator",69080,"7550156 bp",{"v":0.0081,"d":"0.81%"}]
["Tc1-IS630-Pogo",105934,"27576224 bp",{"v":0.0297,"d":"2.97%"}]
["En-Spm",0,"0 bp",{"v":0,"d":"0.00%"}]
["MuDR-IS905",0,"0 bp",{"v":0,"d":"0.00%"}]
["PiggyBac",4845,"794335 bp",{"v":0.0009,"d":"0.09%"}]
["Tourist/Harbinger",5538,"860732 bp",{"v":0.0009,"d":"0.09%"}]
["Other (Mirage,  P-element, Transib)",818,"81814 bp",{"v":0.0001,"d":"0.01%"}]
["Total interspersed repeats",null,"97963135 bp",{"v":0.1056,"d":"10.56%"}]
["Small RNA:",2256,"193273 bp",{"v":0.0002,"d":"0.02%"}]
["Satellites:",3332,"524200 bp",{"v":0.0006,"d":"0.06%"}]
["Simple repeats:",318248,"12238054 bp",{"v":0.0132,"d":"1.32%"}]
["Low complexity:",49226,"2344193 bp",{"v":0.0025,"d":"0.25%"}]
[]
[]
[]
["* most repeats fragmented by insertions or deletions"]
["  have been counted as one element"]
["The query species was assumed to be vertebrata metazoa"]
["RepeatMasker version open-4.0.6 , sensitive mode"]
["                                 "]
["run with rmblastn version 2.2.27+"]
["RepBase Update 20150807, RM database version 20150807"]
[]
[]
[]
[]
[]
[]
["                                                      "]