{"text_format":"3","workbook":"xls","n_sheets":3,"sheets":["Gene expression correlation","PCA","DE lncRNA between various compa"],"not_rendered":{"images":1,"external_links":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Gene expression correlation","index":0,"n_rows":12,"n_cols":5,"rows_kept":12,"flags":["formulas_cached_only"]}
["Correlation of expression between lncRNAs and protein-coding genes"]
[]
["LncRNA","Protein coding gene ID","Protein coding gene annotation","Expression correlation (R2)","Type of correlation"]
["dis_R_00008399","GSONMT00054615001","potassium-transporting atpase alpha chain 1",{"v":0.7542038167451551,"d":"0.75"},"Positive"]
["dis_S_00062412","GSONMT00076273001","protein fam65a",{"v":0.7540578130463432,"d":"0.75"},"Positive"]
["dis_S_00053564","GSONMT00071789001","polyunsaturated fatty acid elongase",{"v":0.7477175762274741,"d":"0.75"},"Positive"]
["dis_S_00057495","GSONMT00005124001","low quality protein: chloride channel protein -kb-like",{"v":0.7378520160794987,"d":"0.74"},"Positive"]
["dis_S_00012584","GSONMT00071637001","sushi domain-containing protein 1-like",{"v":0.7306490770046724,"d":"0.73"},"Negative"]
["dis_R_00069415","GSONMT00078206001","lipoma hmgic fusion partner",{"v":0.7137219326662156,"d":"0.71"},"Positive"]
["dis_R_00074624","GSONMT00060250001","slow myosin heavy chain 1",{"v":0.7004458373717903,"d":"0.70"},"Positive"]
["dis_S_00075739","GSONMT00015921001","heat shock 70 kda protein 4l",{"v":0.6974767287101156,"d":"0.70"},"Positive"]
["dis_S_00032921","GSONMT00050798001","transmembrane protein 68",{"v":0.6972623050455076,"d":"0.70"},"Negative"]

{"sheet":"PCA","index":1,"n_rows":20,"n_cols":16,"rows_kept":20,"flags":["formulas_cached_only"]}
["Principal component analysis of samples based on expression patterns of novel lncRNA identified from resistant (R) and susceptible (S) lines"]
[]
[{"$nulls":14},"Note"]
[{"$nulls":14},"Sample number","Sample name"]
[{"$nulls":14},1,"R-Day1-Fp"]
[{"$nulls":14},2,"R-Day1-Fp"]
[{"$nulls":14},3,"R-Day1-PBS"]
[{"$nulls":14},4,"R-Day1-PBS"]
[{"$nulls":14},5,"R-Day5-Fp"]
[{"$nulls":14},6,"R-Day5-Fp"]
[{"$nulls":14},7,"R-Day5-PBS"]
[{"$nulls":14},8,"R-Day5-PBS"]
[{"$nulls":14},9,"S-Day1-Fp"]
[{"$nulls":14},10,"S-Day1-Fp"]
[{"$nulls":14},11,"S-Day1-PBS"]
[{"$nulls":14},12,"S-Day1-PBS"]
[{"$nulls":14},13,"S-Day5-Fp"]
[{"$nulls":14},14,"S-Day5-Fp"]
[{"$nulls":14},15,"S-Day5-PBS"]
[{"$nulls":14},16,"S-Day5-PBS"]

{"sheet":"DE lncRNA between various compa","index":2,"n_rows":42,"n_cols":3,"rows_kept":42,"merged":[[2,0,2,2],[3,0,3,2],[7,0,7,2],[8,0,8,2],[13,0,13,2],[14,0,14,2],[36,0,36,2],[37,0,37,2]],"flags":["formulas_cached_only"]}
["Multiple group ANOVA analysis of novel lncRNAs expression (genetic line X infection status X time point) showing explicit expression in genetic lines or associated with Fp infection or day of infection"]
[]
["Genetic line specific LncRNAs"]
["R line specific LncRNAs"]
["Feature ID","Fold Change (R line/S line)","FDR p-value correction"]
["dis_R_00048342","∞",0.01]
["dis_R_00050098","∞",{"v":0.000561,"d":"5.61E-04"}]
[]
["S line specific LncRNAs"]
["Feature ID","Fold Change (S line/R line)","FDR p-value correction"]
["dis_S_00030301","∞",{"v":0.000561,"d":"5.61E-04"}]
["dis_S_00043616","∞",0.02]
["dis_S_00083595","∞",{"v":7.99e-07,"d":"7.99E-07"}]
[]
["Flavobacterium infection associated LncRNAs"]
["Feature ID","Fold Change (Fp/PBS) ","FDR p-value correction"]
["dis_R_00037228","∞",{"v":3.44e-09,"d":"3.44E-09"}]
["dis_R_00037932","∞",{"v":3.46e-08,"d":"3.46E-08"}]
["dis_R_00067703","∞",{"v":1.46e-30,"d":"1.46E-30"}]
["dis_S_00002625","∞",{"v":2.55e-06,"d":"2.55E-06"}]
["dis_R_00016845",-6546.59,{"v":4.78e-06,"d":"4.78E-06"}]
["dis_S_00045735","∞",{"v":4.78e-06,"d":"4.78E-06"}]
["dis_S_00034377",-5749.38,{"v":0.000461,"d":"4.61E-04"}]
["dis_S_00078190",24.12,{"v":6.77e-13,"d":"6.77E-13"}]
["dis_R_00057690",9.68,{"v":4.78e-06,"d":"4.78E-06"}]
["dis_R_00035864",6.91,0.01]
["dis_S_00030209",4.09,0.01]
["dis_S_00063498",3.95,0.02]
["dis_R_00013962",2.84,0.03]
["dis_S_00010304",3.23,0.03]
["dis_R_00021365",{"v":10253.19,"d":"10,253.19"},{"v":5.08e-09,"d":"5.08E-09"}]
["dis_R_00048869",-5295.19,0.01]
["dis_R_00036526",{"v":8913.61,"d":"8,913.61"},0.04]
["dis_S_00046889",{"v":-6231.21,"d":"-6,231.21"},{"v":7.22e-05,"d":"7.22E-05"}]
["dis_R_00052785",3.7,{"v":0.00132,"d":"1.32E-03"}]
["dis_S_00014939",{"v":-8831.02,"d":"-8,831.02"},0.05]
[]
["Infection time associated LncRNAs"]
["Feature ID","Fold Change (Day1/Day5)","FDR p-value correction"]
["dis_R_00052409",{"v":-7336.42,"d":"-7,336.42"},{"v":4e-05,"d":"4.00E-05"}]
["dis_R_00048869",-6422.15,{"v":0.000303,"d":"3.03E-04"}]
["dis_R_00086335","∞",{"v":0.000303,"d":"3.03E-04"}]