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["The double-domain cytidine deaminase APOBEC3G is a cellular site-specific RNA editing enzyme "]
[]
["Shraddha Sharma1, Santosh K. Patnaik2, Robert T. Taggart1, Bora E. Baysal1*"]
["Departments of 1Pathology and 2Thoracic Surgery, Roswell Park Cancer Institute"]
["Buffalo, NY, 14263"]
[]
["Common RNA editing sites by APOBEC3G and APOBEC3A in 293T expression systems"]
["id","chromosome","position","reference","variation","plusDNASeq","RNASeq","seqComment","invRepeatSeq","gene","region","variationEffect"]
["1:173935772-GA","1","173935772","G","G>A","cctaaaaccgctgatgagcactagg","ccuagugcucaucagcgguuuuagg","0","ccua","RC3H1","UTR3","NA"]
["1:178476987-CT","1","178476987","C","C>T","aggaaccctcttcaggattacctca","aggaacccucuucaggauuaccuca","0","agg","RASAL2","UTR3","NA"]
["1:219968740-GA","1","219968740","G","G>A","cggtctgtatctgagaagatactaa","uuaguaucuucucagauacagaccg","1","guaucu","EPRS","UTR3","NA"]
["1:235595450-GA","1","235595450","G","G>A","acagaggctggcggtggcagcagct","agcugcugccaccgccagccucugu","0","gcug","MIR5096","ncRNA_intronic","NA"]
["10:58287740-CT","10","58287740","C","C>T","ctgattcaccttcgctggattctaa","cugauucaccuucgcuggauucuaa","0","uu","CISD1","UTR3","NA"]
["10:62806522-CT","10","62806522","C","C>T","cagtagccacatctggtttactcag","caguagccacaucugguuuacucag","0","agua","ADO","UTR3","NA"]
["10:77977112-GA","10","77977112","G","G>A","atcgtcaggtgtgaagacaccatgg","ccauggugucuucacaccugacgau","0","ggugu","POLR3A","UTR3","NA"]
["10:96988124-CT","10","96988124","C","C>T","gagggccctcttcaggacacccatc","gagggcccucuucaggacacccauc","0","ggg","C10orf12,SLIT1","intergenic","NA"]
["11:17377778-CT","11","17377778","C","C>T","aacctgcactatcgtggcagtggtt","aaccugcacuaucguggcagugguu","0","aacc","NCR3LG1","downstream","NA"]
["12:48149343-GA","12","48149343","G","G>A","agctgcctgcacgatggtgcaaaca","uguuugcaccaucgugcaggcagcu","0","ugcac","ASB8","UTR3","NA"]
["13:52031958-CT","13","52031958","C","C>T","ggtgcggtgtctcacacctgtaatc","ggugcggugucucacaccuguaauc","0","ggugu","UTP14C","UTR3","NA"]
["14:23067566-GA","14","23067566","G","G>A","cagttcactggcggtggccaggctc","gagccuggccaccgccagugaacug","0","cuggc","ACIN1","intronic","NA"]
["14:77341367-GA","14","77341367","G","G>A","acctcaacaactgaagagagtgggt","acccacucucuucaguuguugaggu","0","acc","TMED8","downstream","NA"]
["14:93227418-CT","14","93227418","C","C>T","cagaacctcctccgcaggcatcacg","cagaaccuccuccgcaggcaucacg","0","ccu","UBR7","UTR3","NA"]
["15:80978617-GA","15","80978617","G","G>A","agttctcttactgatgagtaagatt","aaucuuacucaucaguaagagaacu","0","ucuuacu","MESDC2","UTR3","NA"]
["17:19446405-GA","17","19446405","G","G>A","cccacggatggcggtggccacctcc","ggagguggccaccgccauccguggg","0","ccac","RNF112,SLC47A1","intergenic","NA"]
["17:38400639-CT","17","38400639","C","C>T","gccatcccacttctgggatgggagg","gccaucccacuucugggaugggagg","0","ccauccca","SOCS7","UTR3","NA"]
["17:49053806-CT","17","49053806","C","C>T","cccacctctcatcaggggtgggggt","cccaccucucaucaggggugggggu","0","cccacc","IGF2BP1","UTR3","NA"]
["19:19506927-CT","19","19506927","C","C>T","ttgtagggccaccgccttcaaacac","uuguagggccaccgccuucaaacac","0","ugu","GATAD2A","UTR3","NA"]
["19:39356853-CT","19","39356853","C","C>T","ggcgctggccctcgccaccgccgtc","ggcgcuggcccucgccaccgccguc","0","ggcg","SAMD4B","UTR5","NA"]
["19:9140496-CT","19","9140496","C","C>T","ttggggacccctcgtgtccccacgc","uuggggaccccucguguccccacgc","0","uggggac","ZNF317","UTR5","NA"]
["2:197389906-GA","2","197389906","G","G>A","ccattagagggcgatggcccacaga","ucugugggccaucgcccucuaaugg","0","ccau","ANKRD44,SF3B1","intergenic","NA"]
["2:47690778-GA","2","47690778","G","G>A","ggcgcaggacccggtggggcagcgg","ccgcugccccaccggguccugcgcc","0","cgc","KCNK12,MSH6","intergenic","NA"]
["22:21451259-CT","22","21451259","C","C>T","tgtactggccaccgccgctgtcact","uguacuggccaccgccgcugucacu","0","ggc","HIC2","UTR3","NA"]
["5:171406561-CT","5","171406561","C","C>T","cccatgcctcttcaggctggaaaca","cccaugccucuucaggcuggaaaca","0","gccu","NPM1","UTR3","NA"]
["6:130839843-GA","6","130839843","G","G>A","tggaatgctgccgaagggcatgtgt","acacaugcccuucggcagcauucca","0","augc","EPB41L2","UTR3","NA"]
["7:139568638-GA","7","139568638","G","G>A","aaaagactagaggatgctctagatg","caucuagagcauccucuagucuuuu","0","cuagag","HIPK2","UTR3","NA"]
["7:140453323-GA","7","140453323","G","G>A","gccctccctttcggtggaaaagtat","auacuuuuccaccgaaagggagggc","0","cuuu","MKRN1","UTR3","NA"]
["7:6402828-CT","7","6402828","C","C>T","tgcaaagaccttcgtctttgagaag","ugcaaagaccuucgucuuugagaag","0","caaagac","RAC1","UTR3","NA"]
["8:96262017-CT","8","96262017","C","C>T","ggccgccgccaccgcggcaggacgg","ggccgccgccaccgcggcaggacgg","0","gccgc","PTDSS1","UTR5","NA"]
["9:122905178-GA","9","122905178","G","G>A","cggcttggcgacggaggcgcctcgt","acgaggcgccuccgucgccaagccg","0","ggcg","RC3H2","UTR5","NA"]
["9:125364501-CT","9","125364501","C","C>T","ccgccttggcctcccaaagtgcggg","ccgccuuggccucccaaagugcggg","0","ccgc","GAPVD1","UTR3","NA"]
["X:100629392-GA","X","100629392","G","G>A","tctggcaaccctgatgagggatgcc","ggcaucccucaucaggguugccaga","0","ggca","TSPAN6","UTR3","NA"]
["X:155070812-GA","X","155070812","G","G>A","ccggggtgagccgaggggcatcccg","cgggaugccccucggcucaccccgg","0","cggg","CMC4,MTCP1","UTR5","NA"]
["1:203852269-CT","1","203852269","C","C>T","agcccccactctctgtggaggatga","agcccccacucucuguggaggauga","0","ccac","ZC3H11A","exonic","nonsynonymous SNV"]
["1:35387118-CT","1","35387118","C","C>T","gaggtagcacatctgctgtttctcc","gagguagcacaucugcuguuucucc","0","agca","ZMYM4","exonic","nonsynonymous SNV"]
["1:61406638-CT","1","61406638","C","C>T","caccgccaccaccgatggccaggcc","caccgccaccaccgauggccaggcc","0","gcca","NFIA","exonic","nonsynonymous SNV"]
["10:60108996-GA","10","60108996","G","G>A","ttctcatcccgtgatgacggcttcc","ggaagccgucaucacgggaugagaa","0","ucau","ANK3","exonic","nonsynonymous SNV"]
["11:118472106-CT","11","118472106","C","C>T","taaagaccccttcgggtctcctcat","uaaagaccccuucgggucuccucau","0","agaccc","KMT2A","exonic","nonsynonymous SNV"]
["11:65573508-CT","11","65573508","C","C>T","gctcctacccaccggatgcgggcct","gcuccuacccaccggaugcgggccu","0","ccc","FAM89B","exonic","nonsynonymous SNV"]
["11:6682237-GA","11","6682237","G","G>A","ggctgtctctgcgaggcagaggcag","cugccucugccucgcagagacagcc","0","cucugc","MRPL17","exonic","nonsynonymous SNV"]
["12:10709943-GA","12","10709943","G","G>A","agacccgtgagcgacggtcaaaggt","accuuugaccgucgcucacgggucu","0","gacc","YBX3","exonic","nonsynonymous SNV"]
["15:90815230-CT","15","90815230","C","C>T","ttatggctccaccgaagcctataaa","uuauggcuccaccgaagccuauaaa","0","uuau","BLM","exonic","nonsynonymous SNV"]
["15:99706811-CT","15","99706811","C","C>T","caagcttgcctccgcaaggacttgt","caagcuugccuccgcaaggacuugu","0","cuugc","MEF2A","exonic","nonsynonymous SNV"]
["16:190035-GA","16","190035","G","G>A","gggaacggctgcggtggcgccgatg","caucggcgccaccgcagccguuccc","0","cggc","LUC7L","exonic","nonsynonymous SNV"]
["16:2764892-CT","16","2764892","C","C>T","ctgggactccctcgaggcacagcct","cugggacucccucgaggcacagccu","0","cug","SRRM2","exonic","nonsynonymous SNV"]
["16:47155742-GA","16","47155742","G","G>A","caaaatgaaaccggtgggcttcttg","caagaagcccaccgguuucauuuug","0","caa","ITFG1","exonic","nonsynonymous SNV"]
["16:56363000-GA","16","56363000","G","G>A","gacgcaccttccgaggggaggaagc","gcuuccuccccucggaaggugcguc","0","cuucc","AMFR","exonic","nonsynonymous SNV"]
["16:67438563-GA","16","67438563","G","G>A","cgattttggcgcggtggcgctgggc","gcccagcgccaccgcgccaaaaucg","0","gcgc","ATP6V0D1","exonic","nonsynonymous SNV"]
["16:69693268-CT","16","69693268","C","C>T","tacagggctcttcagttcctcaaga","uacagggcucuucaguuccucaaga","0","ucuu","NFAT5","exonic","nonsynonymous SNV"]
["17:2299912-GA","17","2299912","G","G>A","tatcctgtcggcggcggcgacatcc","ggaugucgccgccgccgacaggaua","0","ugucg","SMG6","exonic","nonsynonymous SNV"]
["17:63704497-GA","17","63704497","G","G>A","gccactgagcgcgaagggctcatgg","ccaugagcccuucgcgcucaguggc","0","ugagc","STRADA","exonic","nonsynonymous SNV"]
["18:51054838-CT","18","51054838","C","C>T","agggacagccatcgttgtccactga","agggacagccaucguuguccacuga","0","ggaca","SMAD4","exonic","nonsynonymous SNV"]
["19:4428730-CT","19","4428730","C","C>T","gtcctggcccctcggcgtcggaccg","guccuggccccucggcgucggaccg","0","gucc","CHAF1A","exonic","nonsynonymous SNV"]
["22:24098052-CT","22","24098052","C","C>T","actcccactcttcagctgggacact","acucccacucuucagcugggacacu","0","uccca","CABIN1","exonic","nonsynonymous SNV"]
["22:27982855-GA","22","27982855","G","G>A","tcgcagccgggcgatggccggccac","guggccggccaucgcccggcugcga","0","gccgg","TTC28","exonic","nonsynonymous SNV"]
["3:48469384-GA","3","48469384","G","G>A","tcgtggtaggccggtgggcccatgg","ccaugggcccaccggccuaccacga","0","ggcc","SHISA5","exonic","nonsynonymous SNV"]
["5:112838104-CT","5","112838104","C","C>T","gctcctcttcatcaagaggaagctt","gcuccucuucaucaagaggaagcuu","0","uccucuu","APC","exonic","nonsynonymous SNV"]
["8:38210252-CT","8","38210252","C","C>T","aaagtactcctccgagtattaaaaa","aaaguacuccuccgaguauuaaaaa","0","uacuc","BAG4","exonic","nonsynonymous SNV"]
["9:128916112-CT","9","128916112","C","C>T","agacgctccctccggagctcttcca","agacgcucccuccggagcucuucca","0","gcucc","LRRC8A","exonic","nonsynonymous SNV"]
["9:131495801-CT","9","131495801","C","C>T","aggaggccccctcggctgcctccca","aggaggcccccucggcugccuccca","0","ggaggc","PRRC2B","exonic","nonsynonymous SNV"]
["9:32550863-GA","9","32550863","G","G>A","ggcaggatccgcgaaggcgtacccg","cggguacgccuucgcggauccugcc","0","cgc","TOPORS","exonic","nonsynonymous SNV"]
["X:107841203-CT","X","107841203","C","C>T","ttcaccagccaccgcctggtggaac","uucaccagccaccgccugguggaac","0","caccag","MID2","exonic","nonsynonymous SNV"]
["X:129929520-CT","X","129929520","C","C>T","accggtcttcctcaaggtcggacct","accggucuuccucaaggucggaccu","0","gguc","UTP14A","exonic","nonsynonymous SNV"]
["1:20655450-GA","1","20655450","G","G>A","acccaacacctcgaaagaggatggg","cccauccucuuucgagguguugggu","0","ccca","DDOST","exonic","stopgain"]
["1:224289696-GA","1","224289696","G","G>A","aatcaaaagcttgaggaagcctcag","cugaggcuuccucaagcuuuugauu","0","gcuu","NVL","exonic","stopgain"]
["15:75375667-GA","15","75375667","G","G>A","tggttctcacctgatgagcccggag","cuccgggcucaucaggugagaacca","0","cuca","SIN3A","exonic","stopgain"]
["7:73303709-GA","7","73303709","G","G>A","tgctcaggcctcggtggggccaggc","gccuggccccaccgaggccugagca","0","ggcc","NSUN5","exonic","stopgain"]
["1:117096230-CT","1","117096230","C","C>T","ttatgccaccatcgatggctctgtc","uuaugccaccaucgauggcucuguc","0","gcca","TTF2","exonic","synonymous SNV"]
["1:27850251-CT","1","27850251","C","C>T","gacagcactcatcggtggcttgccc","gacagcacucaucgguggcuugccc","0","gca","PPP1R8","exonic","synonymous SNV"]
["10:74070808-CT","10","74070808","C","C>T","gctccttaccttcgatgaggctgag","gcuccuuaccuucgaugaggcugag","0","cuc","VCL","exonic","synonymous SNV"]
["15:42450925-GA","15","42450925","G","G>A","tctcaccacctcgaaggaagcagcg","cgcugcuuccuucgagguggugaga","0","ccu","ZNF106","exonic","synonymous SNV"]
["15:70055217-GA","15","70055217","G","G>A","ggcgtgcctcgggatgccggggcct","aggccccggcaucccgaggcacgcc","0","ggc","TLE3","exonic","synonymous SNV"]
["16:2255695-GA","16","2255695","G","G>A","ggccagcacggcggtggcagtgatc","gaucacugccaccgccgugcuggcc","0","gcca","RNPS1","exonic","synonymous SNV"]
["17:19379921-CT","17","19379921","C","C>T","cctgaggcccaccgtgccctatggc","ccugaggcccaccgugcccuauggc","0","gcc","MAPK7","exonic","synonymous SNV"]
["17:76089262-GA","17","76089262","G","G>A","cgccagcttgacgaaggcactgacg","cgucagugccuucgucaagcuggcg","0","gcc","EXOC7","exonic","synonymous SNV"]
["17:82060748-GA","17","82060748","G","G>A","gggcaagtcgccggtgggcttcgct","agcgaagcccaccggcgacuugccc","0","aag","DUS1L","exonic","synonymous SNV"]
["19:19343895-CT","19","19343895","C","C>T","ggagcacatcatcatgtgccgcctt","ggagcacaucaucaugugccgccuu","0","gcacau","MAU2","exonic","synonymous SNV"]
["19:40447937-GA","19","40447937","G","G>A","gtcgtactcatcggtggtgaggcag","cugccucaccaccgaugaguacgac","0","cuca","BLVRB","exonic","synonymous SNV"]
["20:34931394-GA","20","34931394","G","G>A","aagggcctcggcgatggcctggtcc","ggaccaggccaucgccgaggcccuu","0","ggcc","GSS","exonic","synonymous SNV"]
["3:126475152-GA","3","126475152","G","G>A","cactggacagccgaagggccgcagc","gcugcggcccuucggcuguccagug","0","cug","ZXDC","exonic","synonymous SNV"]
["3:48186719-GA","3","48186719","G","G>A","atctgttgactcggaggagcccatt","aaugggcuccuccgagucaacagau","0","cuc","CDC25A","exonic","synonymous SNV"]
["4:508915-CT","4","508915","C","C>T","ggcctcctccaccgaggaggtgaat","ggccuccuccaccgaggaggugaau","0","ccuccuc","PIGG","exonic","synonymous SNV"]
["6:31777618-GA","6","31777618","G","G>A","ctggaatagggcgatggcctcatcc","ggaugaggccaucgcccuauuccag","0","gga","VARS","exonic","synonymous SNV"]
["6:52404224-CT","6","52404224","C","C>T","cagtgctgccaccgcagcccttctg","cagugcugccaccgcagcccuucug","0","gcugc","PAQR8","exonic","synonymous SNV"]
["7:2235350-GA","7","2235350","G","G>A","caggcacaggctgatgagcctgtca","ugacaggcucaucagccugugccug","0","acaggcu","FTSJ2","exonic","synonymous SNV"]
["9:132923469-GA","9","132923469","G","G>A","gacgcctgttgtgaggacaacgacg","cgucguuguccucacaacaggcguc","0","guugu","TSC1","exonic","synonymous SNV"]
["9:35076798-GA","9","35076798","G","G>A","tagaggcctccagaagtggaggacc","gguccuccacuucuggaggccucua","0","ccucca","FANCG","exonic","synonymous SNV"]
["X:153958644-GA","X","153958644","G","G>A","catggtcttcacgatggtggtaccc","ggguaccaccaucgugaagaccaug","0","cau","HCFC1","exonic","synonymous SNV"]
["X:154360408-GA","X","154360408","G","G>A","gtccccgggctcggtgggcacgtag","cuacgugcccaccgagcccggggac","0","ccc","FLNA","exonic","synonymous SNV"]

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["A3A has 4374 sites (Sharma et al 2016)"]
["A3G has 712 sites"]

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