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{"sheet":"Table S12 Cis-target genes of d","index":0,"n_rows":7,"n_cols":31,"rows_kept":7,"flags":["formulas_cached_only"]}
["LncRNA","LncRNA_position","mRNA","Correlation","Distance","Position","Gene","NR:Seq-id","NR:Score","NR:Evalue","NR:Description","NT:Seq-id","NT:Score","NT:Evalue","NT:Description","Uniprot:UniProtKB-AC","Uniprot:Score","Uniprot:Evalue","Uniprot:Description","COG:gene","COG:Score","COG:Eval","COG:num","Pfam:pfam_ID","Pfam:pfam_Name","Pfam:pfam_Description","GO:biological_process","GO:cellular_component","GO:molecular_function","KEGG:KO","KEGG:Description"]
["MITD1","chr3:102055495-102072789:+","TSGA10",0.910657654,18729,"chr3:101947847-102036766:+","TSGA10","gi|803041316|ref|XP_012029185.1|",4591,0,"PREDICTED: testis-specific gene 10 protein isoform X1 [Ovis aries]","gi|548484867|ref|XM_005686280.1|",2776,0,"PREDICTED: Capra hircus testis specific, 10 (TSGA10), transcript variant X3, mRNA","Q6NY15",163,1e-40,"Testis-specific gene 10 protein",".",".",".",".","pfam01576","Myosin_tail_1","Myosin tail. The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.","GO:0030031|cell projection assembly;","GO:0005737|cytoplasm;GO:0031514|motile cilium;GO:0043005|neuron projection;GO:0031965|nuclear membrane;","GO:0005198|structural molecule activity;",".","."]
["LOC101108964","chr1:9926943-9942984:-","SFPQ",0.987639511,1267,"chr1:9909618-9925674:-","SFPQ","gi|640780872|ref|XP_008046045.1|",1533,0,"PREDICTED: splicing factor, proline- and glutamine-rich [Tarsius syrichta]","gi|593724325|ref|XM_007108236.1|",5767,0,"PREDICTED: Physeter catodon splicing factor proline/glutamine-rich (SFPQ), mRNA","P23246",590,0,"Splicing factor, proline- and glutamine-rich",".",".",".",".","pfam08075","NOPS","NOPS (NUC059) domain. This domain is found at the C-terminus of NONA and PSP1 proteins adjacent to 1 or 2 pfam00076 domains.","GO:0000380|alternative mRNA splicing, via spliceosome;GO:0000724|double-strand break repair via homologous recombination;GO:0070932|histone H3 deacetylation;GO:0006397|mRNA processing;GO:0042754|negative regulation of circadian rhythm;GO:0000122|negative regulation of transcription from RNA polymerase II promoter;GO:0045892|negative regulation of transcription, DNA-templated;GO:1902177|positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway;GO:0045876|positive regulation of sister chromatid cohesion;GO:0042752|regulation of circadian rhythm;GO:0048511|rhythmic process;GO:0008380|RNA splicing;GO:0006351|transcription, DNA-templated;","GO:0000785|chromatin;GO:0005737|cytoplasm;GO:0016363|nuclear matrix;GO:0005654|nucleoplasm;GO:0005634|nucleus;GO:0042382|paraspeckles;GO:0090575|RNA polymerase II transcription factor complex;","GO:0003682|chromatin binding;GO:0001047|core promoter binding;GO:0042826|histone deacetylase binding;GO:0000166|nucleotide binding;GO:0044822|poly(A) RNA binding;GO:0000980|RNA polymerase II distal enhancer sequence-specific DNA binding;GO:0044212|transcription regulatory region DNA binding;GO:0000976|transcription regulatory region sequence-specific DNA binding;","K13219","SFPQ, PSF; splicing factor, proline- and glutamine-rich"]
["LOC101108964","chr1:9926943-9942984:-","LOC101109132",0.974568903,16052,"chr1:9959036-9959962:+","LOC101109132","gi|802976896|ref|XP_011950722.1|",1313,3e-180,"PREDICTED: 40S ribosomal protein S2 [Ovis aries]","gi|556723717|ref|XM_005957612.1|",856,0,"PREDICTED: Pantholops hodgsonii ribosomal protein S2 (RPS2), mRNA","P15880",484,2e-171,"40S ribosomal protein S2","SPCC576.08c",321,3e-108,"COG0098","pfam00333","Ribosomal_S5","Ribosomal protein S5, N-terminal domain.","GO:0044267|cellular protein metabolic process;GO:0010467|gene expression;GO:0000184|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;GO:0051347|positive regulation of transferase activity;GO:0006614|SRP-dependent cotranslational protein targeting to membrane;GO:0006412|translation;GO:0006414|translational elongation;GO:0006413|translational initiation;GO:0006415|translational termination;GO:0019058|viral life cycle;GO:0016032|viral process;GO:0019083|viral transcription;","GO:0005737|cytoplasm;GO:0005829|cytosol;GO:0022627|cytosolic small ribosomal subunit;GO:0070062|extracellular exosome;GO:0005925|focal adhesion;GO:0016020|membrane;GO:0005654|nucleoplasm;GO:0005634|nucleus;","GO:0019899|enzyme binding;GO:0017134|fibroblast growth factor binding;GO:0003729|mRNA binding;GO:0044822|poly(A) RNA binding;GO:0003735|structural constituent of ribosome;","K02981","RP-S2e, RPS2; small subunit ribosomal protein S2e"]
["LOC101106295","chr21:38584554-38629150:+","LOC101105115",0.965742234,2044,"chr21:38631194-38641185:-","LOC101105115","gi|803190965|ref|XP_011957359.1|",1727,0,"PREDICTED: LOW QUALITY PROTEIN: pregnancy-associated glycoprotein 1-like isoform X1 [Ovis aries]","gi|555951725|ref|XM_005887996.1|",934,0,"PREDICTED: Bos mutus pregnancy-associated glycoprotein 1-like (LOC102277441), mRNA","Q29432",103,9e-23,"Pregnancy-associated glycoprotein 1",".",".",".",".","pfam00026","Asp","Eukaryotic aspartyl protease. Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases.","GO:0030163|protein catabolic process;GO:0006508|proteolysis;","GO:0005615|extracellular space;","GO:0004190|aspartic-type endopeptidase activity;",".","."]
["LOC101122926","chr2:225742875-225751462:+","CUL3",0.90933465,12821,"chr2:225623004-225730054:-","CUL3","gi|39104526|dbj|BAC97984.2|",4074,0,"mKIAA0617 protein [Mus musculus]","gi|594624375|ref|XM_007166736.1|",3325,0,"PREDICTED: Balaenoptera acutorostrata scammoni cullin 3 (CUL3), mRNA","B5DF89",87.8,5e-16,"Cullin-3","SPAC24H6.03",434,1e-131,"COG5647","pfam00888","Cullin","Cullin family.","GO:0048208|COPII vesicle coating;GO:0040016|embryonic cleavage;GO:0006888|ER to Golgi vesicle-mediated transport;GO:0007229|integrin-mediated signaling pathway;GO:0032467|positive regulation of cytokinesis;GO:0043161|proteasome-mediated ubiquitin-dependent protein catabolic process;GO:0006513|protein monoubiquitination;GO:0000209|protein polyubiquitination;GO:0042787|protein ubiquitination involved in ubiquitin-dependent protein catabolic process;GO:0017145|stem cell division;","GO:0031463|Cul3-RING ubiquitin ligase complex;GO:0000139|Golgi membrane;GO:0005634|nucleus;","GO:0031208|POZ domain binding;",".","."]
["KIAA1731","chr21:577345-625340:+","C21H11orf54",0.932030487,14858,"chr21:533738-562487:-","C21H11orf54","gi|426251439|ref|XP_004019429.1|",1678,0,"PREDICTED: ester hydrolase C11orf54 homolog [Ovis aries]","gi|548526572|ref|XM_005699392.1|",1958,0,"PREDICTED: Capra hircus chromosome 29 open reading frame, human C11orf54 (C29H11orf54), mRNA","Q2HJH3",635,0,"Ester hydrolase C11orf54 homolog",".",".",".",".","pfam08925","DUF1907","Domain of Unknown Function (DUF1907). The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxH motif that coordinates a zinc ion, and an acetate anion at a site that likely supports the enzymatic activity of an ester hydrolase.",".","GO:0070062|extracellular exosome;GO:0005634|nucleus;","GO:0016788|hydrolase activity, acting on ester bonds;GO:0008270|zinc ion binding;",".","."]