{"text_format":"3","workbook":"xls","n_sheets":3,"sheets":["Total reads","Mapped reads","Length distribution"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Total reads","index":0,"n_rows":54,"n_cols":8,"rows_kept":54,"flags":["formulas_cached_only"]}
["Supplementary Dataset S1"]
["Dynamics of miRNA transcriptome during gonadal development of zebrafish"]
["Christopher Presslauer, Teshome Tilahun Bizuayehu, Martina Kopp, Jorge M.O. Fernandes, Igor Babiak"]
["Total number of reads before and after quality trimming for each small RNA library"]
[]
[null,null,"Total reads",null,null,"Quality trimmed reads"]
[null,"Library #","Run 1","Run 2","Total","Run 1","Run 2","Total"]
["Gonad 3 weeks","W3_G",3215359,3562539,6777898,2651317,2955671,5606988]
["Testis 6 weeks","W6_M1",5633889,null,5633889,4803503,null,4803503]
[null,"W6_M2",4926900,null,4926900,4333604,null,4333604]
[null,"W6_M3",3700181,null,3700181,3149848,null,3149848]
[null,"W6_M4",3919731,null,3919731,3221940,null,3221940]
[null,"W6-M5",4072909,null,4072909,3397311,null,3397311]
["Ovary 6 weeks","W6_F1",4157968,null,4157968,3679337,null,3679337]
[null,"W6_F2",4124216,null,4124216,3698662,null,3698662]
[null,"W6_F3",4549773,null,4549773,4059485,null,4059485]
[null,"W6_F4",4495288,null,4495288,4058674,null,4058674]
[null,"W6_F5",3598121,null,3598121,3139445,null,3139445]
["Testis 9 weeks","W9_M1",3097842,3837749,6935591,2770877,3362083,6132960]
[null,"W9_M2",4612252,4823564,9435816,4127288,4188755,8316043]
[null,"W9_M3",3598149,3591200,7189349,3273436,3209852,6483288]
[null,"W9_M4",3415122,3271574,6686696,3016730,2814220,5830950]
[null,"W9_M5",4021962,3828276,7850238,3641671,3407698,7049369]
["Ovary 9 weeks","W9_F1",4170672,null,4170672,3687134,null,3687134]
[null,"W9_F2",4942817,null,4942817,4441590,null,4441590]
[null,"W9_F3",5583848,null,5583848,5107770,null,5107770]
[null,"W9_F4",5566496,null,5566496,4985204,null,4985204]
[null,"W9_F5",4185859,null,4185859,3787993,null,3787993]
["Testis 12 weeks","W12_M1",3682215,null,3682215,2742173,null,2742173]
[null,"W12_M2",3164889,null,3164889,2625774,null,2625774]
[null,"W12_M3",3660606,null,3660606,3063395,null,3063395]
[null,"W12_M4",4011043,null,4011043,3294146,null,3294146]
[null,"W12_M5",3229904,null,3229904,2479609,null,2479609]
["Ovary 12 weeks","W12_F1",5584971,null,5584971,4937973,null,4937973]
[null,"W12_F2",3890313,null,3890313,3411227,null,3411227]
[null,"W12_F3",4522969,null,4522969,3836718,null,3836718]
[null,"W12_F4",3428646,null,3428646,2720492,null,2720492]
[null,"W12_F5",4184930,null,4184930,3563214,null,3563214]
["Testis 24 weeks","W24_M1",4735839,null,4735839,4082559,null,4082559]
[null,"W24_M2",4377295,null,4377295,3112265,null,3112265]
[null,"W24_M3",4650123,null,4650123,4106169,null,4106169]
[null,"W24_M4",4575526,null,4575526,3997527,null,3997527]
[null,"W24_M5",4563010,null,4563010,3864088,null,3864088]
["Ovary 24 weeks","W24_F1",3975271,null,3975271,3471080,null,3471080]
[null,"W24_F2",4377295,null,4377295,3110999,null,3110999]
[null,"W24_F3",4810673,null,4810673,4232139,null,4232139]
[null,"W24_F4",4382877,null,4382877,3225909,null,3225909]
[null,"W24_F5",4201633,null,4201633,3016153,null,3016153]
["Unfertilized eggs","Egg1",2739974,2877233,5617207,1990000,2098371,4088371]
[null,"Egg2",2490496,2623959,5114455,1625890,1732710,3358600]
[null,"Egg3",2340264,2393885,4734149,1739984,1787702,3527686]
[null,"Egg4",2270466,2323108,4593574,1837931,1892382,3730313]
[null,"Egg5",2339086,2426811,4765897,1788044,1867900,3655944]
["Spermatozoa","Spermatozoa1",3024723,3110102,6134825,2546090,2619999,5166089]

{"sheet":"Mapped reads","index":1,"n_rows":50,"n_cols":19,"rows_kept":50,"flags":["formulas_cached_only"]}
["Total number of reads mapped to each class of RNA"]
[]
[null,"Library #","lincRNA","miscRNA","piRNA","Processed Transcripts","pseudogenes","ribozyme","sense_intronic","snoRNA","snRNA","sRNA","tRNA","tRF","rRNA","scaRNA","antisense","miRNA","Total"]
["Gonad 3 weeks","W3_G",81969,443,313557,3413,77,33,352,1532,892,0,5663,3048,4956,9,18483,14905,449332]
["Testis 6 weeks","W6_M1",756040,1280,1873786,39550,2112,334,3998,16412,4264,0,247170,8596,13856,62,187228,197426,3352114]
[null,"W6_M2",752548,1122,1856710,37894,1408,170,3814,9378,2452,2,60050,7416,13066,28,169136,139786,3054980]
[null,"W6_M3",440140,1132,1458946,24278,754,198,2196,5122,2190,0,52544,1126,8006,64,113830,210676,2321202]
[null,"W6_M4",460414,2126,1683182,17098,824,258,2026,4452,1800,0,17556,854,9184,40,86924,169900,2456638]
[null,"W6_M5",396326,1082,1874446,19498,1226,250,2096,4598,2208,0,39312,1392,7372,76,95104,158102,2603088]
["Ovary 6 weeks","W6_F1",656864,712,1710056,45562,756,54,4148,6650,1610,4,15812,2072,13184,24,215198,59956,2732662]
[null,"W6_F2",623002,922,1617164,41180,712,64,5604,8820,1246,2,120008,3420,17586,28,197098,105748,2742604]
[null,"W6_F3",639946,382,1755520,49258,620,8,7132,7348,1420,0,14824,2666,7802,30,210928,89856,2787740]
[null,"W6_F4",703378,1160,1480492,53538,998,82,6598,10978,2038,2,159436,3426,27788,52,226128,49238,2725332]
[null,"W6_F5",475662,292,1584196,35360,722,24,4582,7958,892,4,211772,1832,10520,30,163548,71478,2568872]
["Testis 9 weeks","W9_M1",267556,1686,1034204,12006,348,136,1076,9108,830,0,10358,1156,22562,52,53042,43670,1457790]
[null,"W9_M2",2846922,13490,11244230,141744,5896,1406,18278,97774,18866,6,558612,31724,274472,314,630536,873824,16758094]
[null,"W9_M3",240950,1044,884940,11410,516,56,1878,11632,1702,0,125848,4192,14602,20,53320,146554,1498664]
[null,"W9_M4",471210,2452,1759690,26910,1068,276,2450,9804,4310,2,71756,5538,76368,46,104048,142516,2678444]
[null,"W9_M5",184482,622,628238,9358,382,80,948,2170,896,0,31542,2282,9792,16,40518,58200,969526]
["Ovary 9 weeks","W9_F1",465224,1434,1809648,36758,448,104,3716,43368,2438,0,125658,1584,44460,64,147470,138830,2821204]
[null,"W9_F2",591558,1296,2131664,39956,512,24,5260,22998,1822,2,23490,2240,22786,44,192894,343392,3379938]
[null,"W9_F3",613620,1364,2478350,49806,534,106,6918,34200,2522,2,33024,4404,50812,54,215698,168524,3659938]
[null,"W9_F4",715074,976,2323132,47014,620,32,6452,22046,2630,4,220898,5916,25816,38,224404,352136,3947188]
[null,"W9_F5",500722,490,2058410,33648,696,30,4804,8810,1404,2,152834,1996,11216,14,190616,121104,3086796]
["Testis 12 weeks","W12_M1",450576,9394,959848,32168,1234,1298,1960,5390,3002,2,351754,11308,24042,64,139016,243664,2234720]
[null,"W12_M2",916294,11124,1756654,57334,1760,2072,3418,8226,4716,2,103038,28258,39446,86,242972,444692,3620092]
[null,"W12_M3",735764,16122,1569748,47046,1490,2486,3260,7622,5544,0,168436,23108,38116,104,211778,549600,3380224]
[null,"W12_M4",622940,16900,1713644,48596,3844,2826,3466,9912,10530,0,1238364,23426,47918,138,205212,670300,4618016]
[null,"W12_M5",557698,13750,1524748,35946,1640,2078,4220,6640,8636,0,352772,9004,40892,118,152420,405522,3116084]
["Ovary 12 weeks","W12_F1",713590,836,2130748,49022,680,50,2982,13040,1354,0,28436,9192,19530,52,213460,919806,4102778]
[null,"W12_F2",433460,890,1624330,26664,532,14,4862,12244,1136,0,261760,4976,18714,28,124792,492174,3006576]
[null,"W12_F3",493874,1602,1650252,31478,552,68,2734,12268,1084,2,388460,5324,20342,50,141564,859754,3609408]
[null,"W12_F4",321342,994,1050562,20400,220,48,2304,8428,1062,0,22066,5394,17594,24,90330,443724,1984492]
[null,"W12_F5",465410,4700,1764528,32794,538,698,3312,15168,1634,4,746284,5590,29006,118,135992,426620,3632396]
["Testis 24 weeks","Ad_M1",440236,5382,1135082,22332,3086,1696,2358,6740,8680,0,604900,12374,15472,62,140492,600324,2999216]
[null,"Ad_M2",478052,3608,1255190,21904,3352,1434,2818,5804,6974,0,1202850,11194,6866,32,159320,695500,3854898]
[null,"Ad_M3",442252,3110,1148362,20470,2552,1210,2380,4918,6658,4,740734,7856,9456,38,142654,612144,3144798]
[null,"Ad_M4",391242,3008,1016148,17268,1732,1114,2214,3830,4680,0,1279460,9574,5228,44,129318,734742,3599602]
[null,"Ad_M5",421010,2742,920398,16884,2158,1160,2894,4126,4956,4,1557230,10896,5822,32,129424,721526,3801262]
["Ovary 24 weeks","Ad_F1",312796,3828,1729004,13024,420,486,5222,22394,35412,0,965006,5588,54144,154,103638,704966,3956082]
[null,"Ad_F2",311708,420,1324936,16428,574,24,11694,12636,406,0,795066,2756,7524,26,115372,897656,3497226]
[null,"Ad_F3",495454,1084,1853278,28072,758,62,8550,29038,980,0,1139432,35264,12128,86,180030,409678,4193894]
[null,"Ad_F4",314082,1128,1409062,17690,512,88,10506,24740,706,0,796056,6444,25880,62,125974,882198,3615128]
[null,"Ad_F5",299898,1542,1392624,15674,370,46,5924,16932,584,0,926818,3768,16258,36,89984,1144290,3914748]
["Unfertilized eggs","Egg1",476574,3902,3298612,12852,256,120,2114,12768,5264,2,302116,54480,73710,64,65878,27036,4335748]
[null,"Egg2",349634,2032,2856528,19952,282,58,5606,15858,1844,0,159758,13408,49542,44,100616,35958,3611120]
[null,"Egg3",295868,2514,2680190,13160,312,72,3842,9028,2374,2,97152,8582,60286,34,70652,148184,3392252]
[null,"Egg4",203886,2086,1899862,712,40,90,110,4006,1602,0,201706,26222,61804,16,5916,9752,2417810]
[null,"Egg5",166666,534,1628338,8950,164,28,2202,5138,828,2,19438,2086,13010,10,51952,20010,1919356]
["Spermatozoa","Spermatozoa1",520904,5232,1007884,14372,272,172,966,546,2956,0,9418,766,10878,102,164404,48692,1787564]

{"sheet":"Length distribution","index":2,"n_rows":34,"n_cols":95,"rows_kept":34,"flags":["formulas_cached_only"]}
["Distribution of reads for each library by size (# nucleotides)"]
[]
[null,"Undifferentiated gonad",{"$nulls":21},"Ovary",{"$nulls":28},"Testis",{"$nulls":34},"Gametes"]
[null,"3 weeks post fertilization",null,"6 weeks post fertilization",{"$nulls":9},"9 weeks post fertilization",{"$nulls":9},"12 weeks post fertilization",{"$nulls":9},"24 weeks post fertilization",{"$nulls":9},"6 weeks post fertilization",{"$nulls":9},"9 weeks post fertilization",{"$nulls":9},"12 weeks post fertilization",{"$nulls":9},"24 weeks post fertilization",{"$nulls":9},"Unfertilized Eggs",{"$nulls":9},"Spermatozoa"]
[null,"W3_G",null,"W6_F1",null,"W6_F2",null,"W6_F3",null,"W6_F4",null,"W6_F5",null,"W9_F1",null,"W9_F2",null,"W9_F3",null,"W9_F4",null,"W9_F5",null,"W12_F1",null,"W12_F2",null,"W12_F3",null,"W12_F4",null,"W12_F5",null,"W24_F1",null,"W24_F2",null,"W24_F3",null,"W24_F4",null,"W24_F5",null,"W6_M1",null,"W6_M2",null,"W6_M3",null,"W6_M4",null,"W6_M5",null,"W9_M1",null,"W9_M2",null,"W9_M3",null,"W9_M4",null,"W9_M5",null,"W12_M1",null,"W12_M2",null,"W12_M3",null,"W12_M4",null,"W12_M5",null,"W24_M1",null,"W24_M2",null,"W24_M3",null,"W24_M4",null,"W24_M5",null,"Egg1",null,"Egg2",null,"Egg3",null,"Egg4",null,"Egg5",null,"Spermatozoa1"]
["Length (nt)","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads","Total reads","% reads"]
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