| arrayUpdate {designGG} | R Documentation |
Update the allocation of samples on the arrays.
This is a subfunction needed for updateDesign, but is not directly used.
arrayUpdate(array.allocation, condition.allocation, nRILs, nSlides)
array.allocation |
matrix with nArray rows and nRIL columns. Elements of 1/0 indicate this RIL (or strain) is/not selected for this array. |
condition.allocation |
matrix with nCondition rows and nRIL columns. Elements of 1/0 indicate this RIL (or strain) is/not selected for this condition. |
nRILs |
number of RILs or strains available for the experiment. |
nSlides |
total number of slides available for experiment. |
This function is used only for designing a dual-channel experiment where samples need to be paired.
A list with the following two elements:
new.array.allocation: an updated array allocation table
new.condition.allocation: an updated condition allocation table
Yang Li <yang.li@rug.nl>, Gonzalo Vera <gonzalo.vera.rodriguez@gmail.com>
Rainer Breitling <r.breitling@rug.nl>, Ritsert Jansen <r.c.jansen@rug.nl>
Y. Li, R. Breitling and R.C. Jansen. Generalizing genetical
genomics: the added value from environmental perturbation, Trends Genet
(2008) 24:518-524.
Y. Li, M. Swertz, G. Vera, J. Fu, R. Breitling, and R.C. Jansen. designGG:
An R-package and Web tool for the optimal design of genetical genomics
experiments. (submitted)
http://gbic.biol.rug.nl/designGG