R: Pair levels for paired RILs (or strains)

pairLevel {designGG}

R Documentation

Pair levels for paired RILs (or strains)

Description

Pair levels for two RILs (or strains) allocated into one slide (bTwoColorArray=T). It is a subfunction needed for designScore function, but is not directly used.

Usage

  pairLevel( xxx, rilNames )

Arguments

`xxx`	can be `genotype.level`, `condition.level` or `interaction.level`
`rilNames`	names for all RILs (or strains) that have been selected for the experiment

Details

This function is used only for two-color array.

Author(s)

Yang Li <yang.li@rug.nl>, Gonzalo Vera <gonzalo.vera.rodriguez@gmail.com>
Rainer Breitling <r.breitling@rug.nl>, Ritsert Jansen <r.c.jansen@rug.nl>

References

Y. Li, R. Breitling and R.C. Jansen. Generalizing genetical genomics: the added value from environmental perturbation, Trends Genet (2008) 24:518-524.
Y. Li, M. Swertz, G. Vera, J. Fu, R. Breitling, and R.C. Jansen. designGG: An R-package and Web tool for the optimal design of genetical genomics experiments. (submitted)
http://gbic.biol.rug.nl/designGG