Cross-loadings for the most relevant genes Regularized dual CCA (tau_x=0.9, tau_y=0.3), feature 1 Probe Gene symbol Chromosome Cross-loading 201887_at IL13RA1 X 0.765014021155 212419_at ZCCHC24 10 0.763839404371 212423_at ZCCHC24 10 0.726075365336 222285_at IGHD 14 0.700145538327 218177_at CHMP1B 18 0.69256081912 218019_s_at PDXK 21 0.683624906669 217849_s_at CDC42BPB 14 0.679168397104 219480_at SNAI1 20 0.674128252087 219582_at OGFRL1 6 0.661774727204 204340_at TMEM187 X 0.660779063767 209679_s_at SMAGP 12 0.650045222141 210128_s_at LTB4R 14 0.648352031341 208598_s_at HUWE1 X 0.644599103809 212465_at SETD3 14 0.643013286235 206147_x_at SCML2 X 0.642949287387 202671_s_at PDXK 21 0.641424462077 202711_at EFNB1 X 0.636477399452 213282_at APOOL X 0.633422596171 209370_s_at SH3BP2 4 0.632594211432 221529_s_at PLVAP 19 0.631329780683 205708_s_at TRPM2 21 0.63099908021 37384_at PPM1F 22 0.629319216647 214037_s_at CCDC22 X 0.62738637004 203585_at ZNF185 X 0.623088168663 209326_at SLC35A2 X 0.622604484415 215726_s_at CYB5A 18 0.620224188993 204045_at TCEAL1 X 0.620138173194 210904_s_at IL13RA1 X 0.61402830095 201136_at PLP2 X 0.613614810227 212460_at C14orf147 14 0.612730196817 204643_s_at ENOX2 X 0.611340535889 213289_at APOOL X 0.611114671824 206394_at MYBPC2 19 0.609923831786 213937_s_at FTSJ1 X 0.607030031439 206674_at FLT3 13 0.606970668531 219015_s_at ALG13 X 0.606442407485 205640_at ALDH3B1 11 0.60459534349 218694_at ARMCX1 X 0.604306935335 214118_x_at PCM1 8 -0.602207408457 221709_s_at ZNF839 14 0.600441007284 201444_s_at ATP6AP2 X 0.6001165639 201209_at HDAC1 1 -0.599866406732 219767_s_at CRYZL1 21 0.598924893568 219837_s_at CYTL1 4 0.597541303841 217511_at KAZALD1 10 0.597449467545 202558_s_at HSPA13 21 0.594469975298 201393_s_at IGF2R 6 -0.594389979689 221039_s_at ASAP1 8 0.593087823424 221188_s_at CIDEB 14 0.593052070597 204301_at KBTBD11 8 0.591241450104 212410_at EFHA1 13 -0.589287373437 217269_s_at PRSS7 21 0.587290032214 205090_s_at NAGPA 16 0.586970392192 202061_s_at SEL1L 14 0.586601680166 209183_s_at C10orf10 10 0.585324917477 200790_at ODC1 2 -0.584887395664 209620_s_at ABCB7 X 0.582598405926 214937_x_at PCM1 8 -0.581177280374 205933_at SETBP1 18 0.580743083627 201443_s_at ATP6AP2 X 0.580621658721 201895_at ARAF X 0.580307591179 206001_at NPY 7 0.57940182288 201811_x_at SH3BP5 3 0.578581289736 204300_at PET112L 4 0.578201253746 214679_x_at GNA11 19 0.577284882098 211626_x_at ERG 21 0.574754407959 211375_s_at ILF3 19 -0.57473889839 221689_s_at PIGP 21 0.573975090308 205673_s_at ASB9 X 0.573777560474 201810_s_at SH3BP5 3 0.573363108151 202284_s_at CDKN1A 6 0.572064036945 214665_s_at CHP 15 -0.570955360572 213766_x_at GNA11 19 0.570239187175 219485_s_at PSMD10 X 0.569096331195 213659_at ZNF75D X 0.568476463685 202607_at NDST1 5 0.567492628883 201508_at IGFBP4 17 0.566304831596 217256_x_at RPL36A /// RPL36AP51 X 0.566149048832 203063_at PPM1F 22 0.565141066943 203506_s_at MED12 X 0.564690075724 203974_at HDHD1A X 0.564488394987 202098_s_at PRMT2 21 0.564276201835 207809_s_at ATP6AP1 X 0.563790145983 216342_x_at RPS4P13 /// RPS4P17 /// RPS4P7 /// RPS4X 20 0.563438828482 202598_at S100A13 1 0.559122863733 202217_at C21orf33 21 0.55747852251 205540_s_at RRAGB X 0.557215004296 209568_s_at RGL1 1 0.556171217619 218499_at RP6-213H19.1 X 0.555644696514 211576_s_at SLC19A1 21 0.555629043244 213508_at C14orf147 14 0.553986207559 209022_at STAG2 X 0.55390468049 214745_at PLCH1 3 0.553786424278 204057_at IRF8 16 0.552977819664 54632_at THADA 2 -0.552514847431 217805_at ILF3 19 -0.552142716079 204752_x_at PARP2 14 0.551566360988 221532_s_at WDR61 15 -0.550303610944 201126_s_at MGAT1 5 0.549142809981 214735_at IPCEF1 6 0.547863174606 216071_x_at MED12 X 0.545939453604 213347_x_at RPS4X X 0.543514145528 214527_s_at PQBP1 X 0.543298501181 207843_x_at CYB5A 18 0.542999145786 205324_s_at FTSJ1 X 0.541563808372 210176_at TLR1 4 0.54146577192 208788_at ELOVL5 6 -0.54093294037 217769_s_at POMP 13 -0.5398530537 219335_at ARMCX5 X 0.539173876558 214366_s_at ALOX5 10 0.538685657 214813_at ZNF75D X 0.537926374071 215773_x_at PARP2 14 0.537704057233 207638_at PRSS7 21 0.537452417797 222079_at ERG 21 0.537325084609 209365_s_at ECM1 1 0.535089971199 204445_s_at ALOX5 10 0.534912395571 217883_at MMADHC 2 -0.533953615921 218757_s_at UPF3B X 0.532670402455 211098_x_at TMCO1 1 -0.531910291113 201339_s_at SCP2 1 -0.530434198448 221838_at KLHL22 22 0.530035499331 214746_s_at ZNF467 7 0.530010218514 206016_at CCDC22 X 0.529781783031 202174_s_at PCM1 8 -0.529750290737 202086_at MX1 21 0.529693951724 213538_at SON 21 0.528953056802 208716_s_at TMCO1 1 -0.52883441393 204070_at RARRES3 11 -0.528772517699 211612_s_at IL13RA1 X 0.527888223924 209213_at CBR1 21 0.527838972272 209366_x_at CYB5A 18 0.527807347095 202371_at TCEAL4 X 0.526623400771 203843_at RPS6KA3 X 0.525367068191 210298_x_at FHL1 X 0.525149768216 204408_at APEX2 X 0.525133249155 205180_s_at ADAM8 10 0.524708862776 204032_at BCAR3 1 0.52350001272 50221_at TFEB 6 0.523258697275 205584_at ALG13 X 0.52264901867 212588_at PTPRC 1 -0.52215403511 216620_s_at ARHGEF10 8 0.522118126494 32625_at NPR1 1 0.521595766796 211733_x_at SCP2 1 -0.521496628719 208614_s_at FLNB 3 0.520213572861 37278_at TAZ X 0.520141095444 219600_s_at TMEM50B 21 0.518842575654 220999_s_at CYFIP2 5 -0.518223119507 206831_s_at ARSD X 0.51789341296 203776_at GPKOW X 0.517841751452 205480_s_at UGP2 2 -0.517627188024 Regularized dual CCA (tau_x=0.9, tau_y=0.3), feature 2 Probe Gene symbol Chromosome Cross-loading 205253_at PBX1 1 0.828806724196 212148_at PBX1 1 0.817380870936 212151_at PBX1 1 0.810251371116 205769_at SLC27A2 15 0.769887445552 206028_s_at MERTK 2 0.76137359346 211373_s_at PSEN2 1 0.759575745014 211913_s_at MERTK 2 0.759206879847 202796_at SYNPO 5 0.75195495104 212845_at SAMD4A 14 0.743548459856 220252_x_at CXorf21 X 0.726980675476 203999_at SYT1 12 0.725054274814 218087_s_at SORBS1 10 0.722784008339 221113_s_at WNT16 7 0.714675410436 207110_at KCNJ12 17 0.712400857953 219517_at ELL3 15 0.70569852961 205768_s_at SLC27A2 15 0.70264243028 213005_s_at KANK1 9 0.689626227374 208644_at PARP1 1 0.687655637433 220389_at CCDC81 11 0.683451597649 208567_s_at KCNJ12 /// LOC100131509 /// LOC100134444 17 0.681658821703 219551_at EAF2 3 0.6812828599 35974_at LRMP 12 0.68100717018 219271_at GALNT14 2 0.677773570207 204674_at LRMP 12 0.674026856308 203998_s_at SYT1 12 0.673603591457 206181_at SLAMF1 1 0.672914353423 206999_at IL12RB2 1 0.657709088512 212288_at FNBP1 9 -0.65423859119 206304_at MYBPH 1 0.652480220471 40148_at APBB2 4 0.65186343659 212789_at NCAPD3 11 0.640687754235 46665_at SEMA4C 2 0.635529808634 204562_at IRF4 6 0.633367502619 219518_s_at ELL3 15 0.632367894194 202178_at PRKCZ 1 0.621539652309 205083_at AOX1 2 0.621206213276 204202_at IQCE 7 0.614522140763 201695_s_at NP 14 0.606633715961 205082_s_at AOX1 2 0.603674608252 220911_s_at KIAA1305 14 0.602016265419 43544_at MED16 19 -0.598397394923 210150_s_at LAMA5 20 0.597087145177 200810_s_at CIRBP 19 -0.59646501213 205316_at SLC15A2 3 0.590105051932 202136_at ZMYND11 10 -0.589861479904 212573_at ENDOD1 11 0.582463041946 208056_s_at CBFA2T3 16 -0.581562763256 218168_s_at CABC1 1 0.578622552928 213940_s_at FNBP1 9 -0.576936793895 205893_at NLGN1 3 0.576042819236 206613_s_at TAF1A 1 0.575464509279 207926_at GP5 3 0.575135497674 213213_at DIDO1 20 -0.574901426469 213358_at KIAA0802 18 0.571084109229 217968_at TSSC1 2 0.570994413761 211819_s_at SORBS1 10 0.570441575943 209558_s_at HIP1R 12 0.56533122254 214170_x_at FH 1 0.564485417459 204114_at NID2 14 0.564343034287 213419_at APBB2 4 0.560921605027 202421_at IGSF3 1 0.560539134813 203033_x_at FH 1 0.5603246984 212549_at STAT5B 17 -0.559114286063 218181_s_at MAP4K4 2 -0.55886200469 206255_at BLK 8 0.558464541502 203736_s_at PPFIBP1 12 0.557226564861 200618_at LASP1 17 -0.557066156388 207957_s_at PRKCB 16 -0.556483466056 202741_at PRKACB 1 -0.551997709159 213909_at LRRC15 3 0.55149252758 202085_at TJP2 9 0.551089587592 206690_at ACCN1 17 0.550605133821 219155_at PITPNC1 17 0.550422966797 218325_s_at DIDO1 20 -0.549209875154 219161_s_at CKLF 16 -0.548613756214 216799_at --- 15 0.548511866579 205489_at CRYM 16 0.547923968772 204262_s_at PSEN2 1 0.546548535147 207877_s_at NVL 1 0.546242604343 209974_s_at BUB3 10 0.544123265671 202764_at STIM1 11 -0.543203162434 219663_s_at TMEM121 14 0.541955072052 201457_x_at BUB3 10 0.5409850899 219039_at SEMA4C 2 0.540288942108 203940_s_at VASH1 14 0.540152548407 214075_at NENF 1 0.539191023254 204529_s_at TOX 8 -0.538556440769 212133_at CYFIP1 15 0.537489218926 203748_x_at RBMS1 2 -0.536871362476 218578_at CDC73 1 0.535893188517 212077_at CALD1 7 0.535593962022 200811_at CIRBP 19 -0.535588624514 219875_s_at PPPDE1 1 0.535213198145 213252_at SH3PXD2A 10 0.532352771442 203263_s_at ARHGEF9 X 0.532058066753 212371_at PPPDE1 1 0.530147703293 201825_s_at SCCPDH 1 0.529799631914 38340_at HIP1R 12 0.52969903984 202733_at P4HA2 5 0.52874935485 218980_at FHOD3 18 0.528668590992 204143_s_at ENOSF1 18 -0.528614224634 204174_at ALOX5AP 13 -0.527598965365 211945_s_at ITGB1 10 -0.527053317456 206070_s_at EPHA3 3 0.526370164895 203032_s_at FH 1 0.525892415194 204776_at THBS4 5 0.524456150432 218949_s_at QRSL1 6 0.522681707465 217854_s_at POLR2E 19 -0.522252312238 201162_at IGFBP7 4 0.521840410804 214265_at ITGA8 10 0.521461254369 218948_at QRSL1 6 0.520890548784 210934_at BLK 8 0.519426670698 219157_at KLHL2 4 0.519150199483 218714_at PRR14 16 -0.518470540798 202242_at TSPAN7 X -0.518388851902 201579_at FAT1 4 0.517859236208 213405_at RAB22A 20 -0.51593303863 209685_s_at PRKCB 16 -0.515222900582 205317_s_at SLC15A2 3 0.514526399241 209484_s_at NSL1 1 0.513208581523 209605_at TST 22 0.513143634382 41037_at TEAD4 12 0.511270344038 214880_x_at CALD1 7 0.511034009784 219752_at RASAL1 12 0.510764900817 218640_s_at PLEKHF2 8 0.509583396908 215519_x_at SGSM3 22 0.508577255421 45687_at PRR14 16 -0.50783953069 205229_s_at COCH 14 0.507747236323 203865_s_at ADARB1 21 0.506751051328 221021_s_at CTNNBL1 20 0.506565730471 218771_at PANK4 1 -0.506420867543 219933_at GLRX2 1 0.504163033348 218808_at DALRD3 3 0.503023003471 214786_at MAP3K1 5 0.50212707386 205565_s_at FXN 9 0.501332322688 206928_at ZNF124 1 0.501077801659 213373_s_at CASP8 2 -0.501063632109 210450_at LOC90925 14 0.500586184817 202657_s_at SERTAD2 2 -0.500313819146 221727_at SUB1 5 -0.50018413174 220132_s_at CLEC2D 12 0.499781028721 220574_at SEMA6D 15 0.49959230859 209275_s_at CLN3 16 -0.497235624499 201355_s_at BAZ2A 12 0.496357191037 201163_s_at IGFBP7 4 0.495372340188 202696_at OXSR1 3 -0.495162058086 212224_at ALDH1A1 9 0.495006570095 202853_s_at RYK 3 -0.494779555602 203225_s_at RFK 9 0.493808585623 217124_at IQCE 7 0.492095200999