Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | uc001aoe.1_4_5 | chr1:6692430 | + | AG | TG | (A1) shift; increase; inframe | alternative | THAP3 | NP_612359.2 | NM_138350.3 | THAP domain-containing protein 3 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 6692430 | 6692555 | + | AG | ACTTCACCCTGCCGTTCCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACGTAAAACAG |
| Chimp | panTro2 | chr1 | 6691722 | 6691847 | + | TG | ACTTCACCCTGCCGTTCCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACGTAAAACAG |
| Gorilla | gorGor1 | Supercontig_0039685 | 7380 | 7505 | - | TG | ACTTCACCCTGCCGTTCCCAGGTCCTCCCTGAGGCGGGGGCTGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACGTAAAACAG |
| Orangutan | ponAbe2 | chr1 | 223877427 | 223877552 | - | TG | ACTCCACCCTGCCGTTCCCAGGTCCTCCCTGAGGGGGGGGCCGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGACCCCGTAAAACAG |
| Rhesus | rheMac2 | chr1 | 9652285 | 9652410 | + | TG | ACTCCACGCTGCCGTTCCCAGGGCCTCCCTGAGGGGGGGGCCGGAGAGGACAGCCCTGGGAGAAAGATGGACACTGCGCTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCCCGTAAAACAG |
| Baboon | papHam1 | scaffold9211 | 13801 | 13926 | - | TG | ACTCCACGCTGCCGTTCCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGCCCTGGGAGAAAGATGGACACTGCGCTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCCCGTAAAACAG |
| Marmoset | calJac1 | Contig1199 | 553569 | 553694 | + | TG | ACTTCACCCTGCTGTTCCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGAATGGCCCTGGGAGAAACATGAACACTGCGCATGAGGAGCTTCAGTTGCCCCCAGATGCTGCAGGACCCGTAAAACAG |
| Lemur | micMur1 | scaffold_4729 | 49593 | 49718 | + | TG | ATTGCACCCTGCTGTCCCCAGGTCCTCCCTGAGGCAGGGGCTGAGGAGCACAGCCCCGGGAGAAACATGGACACTGCACTCGAAGAGCTTCAGCTGCCCCCGAATGCTGAAGGCCCCACCAAACAG |
| Mouse | mm9 | chr4 | 151357744 | 151357865 | - | TG | ACTCCGCCTGCTGTTCCCAGGTCTGCCCTGAGGTGGGGGCTGGTGGGGACAGCTCAGGGAGGAACATGGACACCACACTGGAAGAACTTCAGCCTCCAACCCCGGAAGGCCCCGTGCAGCAG |
| Cow | bosTau4 | chr16 | 43984955 | 43985079 | - | TG | GCTCCGCCCTGTCTTTACAGGTCCTCCCTGAGACGGGCTCCGGGGAGTGTGGCCTGGGGAGGAAGATGGATACGACAGTTGAAGTGCTGCAGCTGCCCCCCGAGGTTGGAGGCCTAGGAGCACAG |
Alignment (splice site sequences are in lowercase)
Human agACTTCACCCTGCCGTTCCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCA Chimp t............................................................................... Gorilla t..........................................T.................................... Orangutan t....C..............................G........................................... Rhesus t....C...G..............G...........G..................C...........G...........G Baboon t....C...G.............................................C...........G...........G Marmoset t.............T...................................A.TG.C...............A.......G Lemur t..T.G........T..C...................A.....T.AG...C....C..C..................... Mouse t....C.G.-....T...........TG........T......T..T.G......CT.A.....G...........CA.. Cow t.G..C.G.....T.-..TA...............A....CT....G...TGTG.C.TG.....G..G.....T..GA.. Human CTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACGTAAAACAGgt Chimp .................................................. Gorilla .................................................. Orangutan ..................................A..C............ Rhesus .....................................C............ Baboon .....................................C............ Marmoset .A...G..................G....T.C...A.C............ Lemur ..C............C.......G.....T.......C.ACC........ Mouse ..G.....A.....---...T....CCC.G.......C...GC.G..... Cow G......T...G...C.......CG.G.TT.G.....TA.G.GC......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | uc001bfa.2_3_15 | chr1:22047656 | - | AG | AA | (A3) shift; decrease; inframe | alternative | USP48 | Q86UV5-5 | AK021830.1 | ubiquitin specific protease 48 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 22047529 | 22047656 | - | AG | CGATGGATTTTGGGTGGGGAAGTCCTCCTTGCGGAGTTGGCGCCAGCTAGCTCTTGAACAGCTGGATGAGCAAGATGGTGATGCAGAACAAAGCAACGGAAAGATGAACGGTAGCACCTTAAATAAAG |
| Chimp | panTro2 | chr1 | 21861000 | 21861127 | - | AA | CGATGGATTTTGGGTGGGGAAGTCTTCCTTGCGGAGTTGGCGCCAGCTAGCTCTTGAACAGCTGGATGAGCAAGATGGTGATGCAGAACAAAGCAACGGAAAGATGAACGGTAGCACCTTAAATAAAG |
| Gorilla | gorGor1 | Supercontig_0390476 | 8198 | 8325 | - | AA | CGATGGATTTTGGGTGGGGAAGTCCTCCTTGCGGAGTTGGCGCCAGCTAGCTCTTGAACAGCTGGATGAGCAAGATGGTGATGCAGAACAAAGCAACGGAAAGATGAACGGTAGCACCTTAAATAAAG |
| Orangutan | ponAbe2 | chr1 | 208731124 | 208731251 | + | AA | CGATGGATTTTGGGTGGGGAAGTCCTCCTTGCGGAGTTGGCGCCAGCTAGCTCTTGAACAGCTGGATGAGCAAGATGGTGATGCAGAACAAAGCAACGGAAAGATGAACGGTAGCACCTTAAATAAAG |
| Baboon | papHam1 | scaffold641 | 49150 | 49277 | + | AA | TGATGGATTTTGGGTGGGGAAGTCCTCCTTGAGGAGCTGGCGCCAGCTAGCTCTTGAACAGCTAGATGAGCAAGATGGTGATGCAGAACAAAGCAACGGAAAGATGAATGGTAGCACCTTAAATAAAG |
| Marmoset | calJac1 | Contig1452 | 351274 | 351401 | - | AA | CGATGGATTTTGGGTGGGGAAGTCTTCTTTGCGGAGTTGGCGCCAGCTAGCTCTTGAACAGCTAGATGAGCAAGACGGTGATGCAGAACAAAGCAACGGAAAGATGAACGGCAGCACCTTAAATAAAG |
| Tarsier | tarSyr1 | scaffold_3926 | 16289 | 16416 | + | AA | TGATGGATTTTGGGTGGGGAAGTCCTCCTTGCGGAGCTGGCGCCAGCTGGCTCTTGAGCAACTAGATGAGCAAGACGGTGATGGAGACCAAAGCAATGGAAAAATGAACGGCAACACCTTGAACAAAG |
| Galago | otoGar1 | scaffold_96755.1-30206 | 20280 | 20407 | + | AC | GGATGGATTTTGGGTGGGAAAATCCTCCTTGCGGAGTTGGCGCCAGCTGGCTCTCGAACAGCTGGACGAGCAAGATGGCGACACAGACCACAGCAATGGAAAAATGAATGGCAGCACCTTGAATAAAG |
| Mouse | mm9 | chr4 | 137181075 | 137181202 | + | AG | TGATGGATTTTGGGTAGGAAAGTCTTCCTTGCGTAGCTGGCGCCAGCTGGCTCTTGAACAACTAGATGAGCAAGATGGTGAGGCGGAGCAAAGCAACGGGAAGATAAACGGGAGCACCTTCAATAAAG |
| Cow | bosTau4 | chr2 | 135543495 | 135543622 | + | AG | TGATGGATTTTGGGTGGGGAAGTCCTCCTTACGCAGTTGGCGCCAGCTGGCTCTTGAACAGCTTGATGAGCAAGATGGCGATGCAGACCAAAGCAACGGGAAAATGAATGGCAACACCTTGAATAAAG |
| Dog | canFam2 | chr2 | 80345184 | 80345311 | + | AA | TGATGGATTTTGGGTGGGGAAATCCTCCCTGCGCAGTTGGCGCCAGCTCGCTCTTGAACAGTTAGATGAACAAGATGGTGATGTAGACCAAAGCAACGGGAAAATGAACGGCAACACATTGAGTAAAG |
Alignment (splice site sequences are in lowercase)
Human agCGATGGATTTTGGGTGGGGAAGTCCTCCTTGCGGAGTTGGCGCCAGCTAGCTCTTGAACAGCTGGATGAGCAAGATGG Chimp .a........................T..................................................... Gorilla .a.............................................................................. Orangutan .a.............................................................................. Baboon .aT..............................A....C..........................A.............. Marmoset .a........................T..T...................................A...........C.. Tarsier .aT...................................C...........G........G..A..A...........C.. Galago .cG.................A..A..........................G.....C...........C........... Mouse ..T..............A..A.....T........T..C...........G...........A..A.............. Cow ..T.............................A..C..............G..............T.............. Dog .aT....................A......C....C..............C............T.A.....A........ Human TGATGCAGAACAAAGCAACGGAAAGATGAACGGTAGCACCTTAAATAAAGgt Chimp .................................................... Gorilla .................................................... Orangutan .................................................... Baboon ..............................T..................... Marmoset .................................C.................. Tarsier .....G...C........T.....A........C.A......G..C...... Galago C..CA....C..C.....T.....A.....T..C........G......... Mouse ...G..G..G...........G.....A.....G........C......... Cow C........C...........G..A.....T..C.A......G......... Dog .....T...C...........G..A........C.A...A..G.G.......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | uc001cax.1_15_15 | chr1:36932509 | - | AG | AA | (A1) shift; increase; inframe | alternative | CSF3R | NP_724781.1 | NM_156039.3 | granulocyte colony-stimulating factor receptor |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 36931958 | 36932509 | - | AG | CTGCCCGGACCCAGACAGGGACAGTGGCTGGGGCAGACATCTGAAATGAGCCGTGCTCTCACCCCACATCCTTGTGTGCAGGATGCCTTCCAGCTGCCCGGCCTTGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGATGAAAAGAAGCCGGTGCCCTGGGAGTCCCATAACAGCTCAGAGACCTGTGGCCTCCCCACTCTGGTCCAGACCTATGTGCTCCAGGGGGACCCAAGAGCAGTTTCCACCCAGCCCCAATCCCAGTCTGGCACCAGCGATCAGGTCCTTTATGGGCAGCTGCTGGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGTGACTCCACTCAGCCCCTCTTGGCGGGCCTCACCCCCAGCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCTTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCAACTTCCCCCTCCTGCAGGGGATCCGGGTCCATGGGATGGAGGCGCTGGGGAGCTTCTAG |
| Chimp | panTro2 | chr1 | 37006241 | 37006792 | - | AA | CTGCCCGGACCCAGACAGGGACGGTGGCTGGGGCACACATCTGAAATGAGCCGTGCTCTCACCCCACATCCTTGTGTGCAGGATGCCTTCCAGCTGCCCGGCCTTGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGATGAGAAGAAGCCGGTGCCCTGGGAGTCCCATAACAGCTCAGAGACCTGTGGCCTCCCTACTCTGGTCCAGACCTATGTGCTCCAGGGGGACCCAAGAGCAGCTTCCACCCAGCCCCAATCCCAGTCTGGCACCAGCGATCAGGTCCTTTATGGGCAGCTGCTGGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGTGACTCCACTCAGCCTCTCTTGGCGGGCCTCACCCCCAGCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCTTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCAACTTCCCCCTCCTGCAGGGGATCCGGGTCCATGGGATGGAGGCGCTGGGGAGCTTCTAG |
| Gorilla | gorGor1 | Supercontig_0053709 | 14103 | 14654 | - | AA | CTGCCCGGACCCAGACAGGGACGGTGACTGGGGCAGACATCTGAAATAAGCCGTGCTCTCACCCCACATCCTTGTGTGCAGGATGCCTTCCAGCTGCCCGGCCTTGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGACGAGAAGAAGCCAGTGCCCTGGGAGTCCCATAACAGCTCAGAGACCTGTGGCCTCCCCACTCTGGTCCAGACCTATGTGCTCCAGGGGGACCCAAGAGCAGCTTCCACCCAGCCCCAATCCCAGTCTGGCACCAGCGATCAGGTCCTTTATGGGCAGCTGCTGGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGTGACTCCACTCAGCCCCTCTTGGCGGGCCTCACCCCCAGCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCTTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCAACTTCCCCCTCCTGCAGGGGATCCGGGTCCATGGGATGGAGGCGTTGGGGAGCTTCTAG |
| Orangutan | ponAbe2 | chr1 | 193720293 | 193720844 | + | AA | CTGCCTGGACCCAGACAGGGATGGTGGCTGGGGCAGACATCTGAAAAGAGCCGTGCTCTCACCCCACATCCTTGTGTGCAGGATGCCTTCCAGCTGCCCGGCCTTGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGACAAGAAGAAGCCGGTGCCCTGGGAATCCCATAACAGCTCAGAGACCTGTGGCCTCCCCACTCTGGTCCAAACCTATGTGCTCCAGGGGGACCCAAGAGCAGCTTCCACCCAGCCCCAATCCCAGTCTGGCACCAGCGATCAGGTCCTTTATGGGCAGCTGCTGGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGTGACTCCACTCAGCCCCTCTTGGCGGGCCTCACCCCCAGCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCCTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCGACTTCCCCCTCCTGCAGGGGATCCGGGTGCATGGGATGGAGGGGCTGGGGAGCTTCTAG |
| Rhesus | rheMac2 | chr1 | 39331835 | 39332386 | - | AA | CTGCCTGGACCTAGACAGGGACGGTGGCTGGGGCAGACATCTGAAAGGAGCCGTGCCCTCACCCCACATCCTTGTGTGCAGGAGGCCTTCCAGCTGCCTGGCCTGGGCATGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGACGAGAAGAAGCCACTGCCCTGGGAGTCCCATAACAGCTCAGAGACCTGTGGCCTCCCCACTCTGGTCCAGACCTATGTGCTCCAGGGGGACCTAAGAGCAGCTTCCGCCCAGCCCCAATCCCAGTCTGGCACCAGCAATCAGGTCCTCTACGGGCAGCTGCTGGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGCGACTCCACTCAGCCCCTCTTGGCGGGCCTCACCCCCAGCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCCTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCGACTTCCCCCTCCTGCAGGGGATCCGAGTCCATGGGGTGGAGGGGCTGGAAAGCTTCTAG |
| Baboon | papHam1 | scaffold7406 | 46194 | 46745 | - | AA | CTGCCTGGACCTAGACAGGGACGGTGGCTGGGGCAGACATCTGAAAGGAGCCGTGCCCTCACCCCACATCCTTGTGTGCAGGAGGCCTTCCAGCTGCCCGGCCTGGGCATGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGACGAGAAGAAGCCACTGCCCTGGGAGTCCCATGACAGCTCAGAGACCTGTGGCCTCCCCACTCTGGTCCAGACCTACGTGCTCCAGGGGGACCTAAGAGCAGCTTCCGCCCAGCCCCAATCCCAGTCCGGCACCAGCAATCAGGTCCTCTACGGGCAGCTGCTGGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGCGACTCCACTCAGCCCCTCTTGGCGGGCCTCACCCCCAGCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCCTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCGACTTCCCCCTCCTGCAGGGGATCCGGGTCCATGGGGTGGAGGGGCTGGAAAGCTTCTAG |
| Marmoset | calJac1 | Contig2067 | 341153 | 341693 | + | CA | CTGCCAGAACCCAGACAGGGACTGTGGCTGGGGCAGACATATGAAATGAGCCCCACATCCTTGTGTGCAGGAGGCCTTCCAGCTGCCCAGCCTCGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGAGAAGAAGAAGCCGGTGCCCTGGGAGTCTCTTAACAGCTCCGAGACTTGTGGCCTCCCCACTCTGGTCCAGCCCTATGTGCTCCAGAGGGACCCAAGAACAGCTTCCACCCAGCCCCAATCCCAGTCTGGCACCAGCAATCAGGTCCTTTATGGGCAGCTGGTGGGCAGTCCCACAAGCCCAGGGCCAGGGCACTACCTCCGCTGTGACTCCACTCAGCCCCTCTTGGGGGGCGTCAGCCCCAGCACTAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCCTGGGGACCCTGGTAGCCCCAGCCCCAAGCCAGGAGGACGACTGTGTCTTTGGGCCACTGCTCGACTTCCCCCTCCTGCAGGGGATCCAGGTCCATGGGGTGGAGGGGTTGGGGAGCTTCTAG |
| Lemur | micMur1 | scaffold_1740 | 123257 | 123807 | + | TA | CTGCCCCAACTCAGGAAGGGACAGTGGCTGGGGTAGATATCTGAAATGAACCATGCCCTCCCCCAATGTCCTGTGTCCAGGAGACCTTCCAGCTGCCCAGCCTTCGGGACCCTGGCATGCCACCCATCACCAAGATCACAGTGCTAGAGGAGGAAGAGAAGAAGCTGGGGCCCTGGGAGTCCAGTGACAGCTCAGAGACCTGCCTCCCCACCCTGGTCCAGACCTATGTGCTCCAAGGGGACCCAAAAGCAGCTTCTACCCAGCCACAGGCCGAATCTAGCACCAGCGACCCGGTCCTTTACGGGCAGGTGCTGGGCAGCCCCACAGGCCCAGGGCACTACCTCCGCTATGACTCTACTCAGCCCCTTTTGGGGGGCCTCACTCCCAGCCCCAAGTGTTATGAGAACCTCTGGTTCCAGACCAGCCCCTTGAGGTCCCCTGTACCCTCAGACCCAAGCCAGGAGGATGACTGTGTCTTTGGGCCACTGCTAGACTTCCCCCTCCTGCAGGGGCTCCAGGTCCATGGGGTGGAGGGACTAGGGGGCTTCTAG |
| Mouse | mm9 | chr4 | 125720527 | 125721082 | + | AA | CTACCTCATCTCTGGAAGGAACGATGTGTGGAGCAGACATGTGAGACAAACCATGCCGTATTGTGTATATCCCTGTGTTCAGGAAACCTTCCAGTTACCCAGCTTCTGGGACTCCAGCGTGCCATCAATCACCAAGATCACTGAACTGGAGGAAGACAAGAAACCGACCCACTGGGATTCCGAAAGCTCTGGGAATGGTAGCCTTCCAGCCCTGGTTCAGGCCTATGTGCTCCAAGGAGATCCAAGAGAAATTTCCAACCAGTCCCAGCCTCCCTCTCGCACTGGTGACCAGGTCCTCTATGGTCAGGTGCTTGAGAGCCCCACCAGCCCAGGAGTAATGCAGTACATTCGCTCTGACTCCACTCAGCCCCTCTTGGGGGGCCCCACCCCTAGCCCTAAATCTTATGAAAACATCTGGTTCCATTCAAGACCCCAGGAGACCTTTGTGCCCCAACCTCCAAACCAGGAAGATGACTGTGTCTTTGGGCCTCCATTTGATTTTCCCCTCTTTCAGGGGCTCCAGGTCCATGGAGTTGAAGAACAAGGGGGTTTCTAG |
| Cow | bosTau4 | chr3 | 116643351 | 116643910 | + | CA | CCACCCCAGTGCAGGAAGGGACAGTGGCTGGAACAGACATCTGAAATGAACCAGGCCCTCACCACACATCTTTATGTCAGGATATCTTACAGCTGCCCAGCCTTCGGGACCCCGGCATGCCACCCATCACCAAGATCACGGTGCTGGAGGAGGAAGAGAAGAAGCCAGGGCCCTGGGAGTCCAATGCCAGCTCAGGGCCCGGTAGCCTCTCCACCCTTGTCCAGGCCTATGTGCTCCAGGGGGACCCAAGAGTGCCCTCCGCTCAGCCTCAGCCCCAGCCTGGCAACAGCGACCAGGTGCTTTACGTGCAGGTGCTGGGCAGCCCCACGGGCCCAGGGCCTGGGCACTACCTCCGCTGCGACTCAACTCAGCCCCTCTTGGAGGGCCTCTCCCCCAGTCCCAAGTCCTACGAGAACCTCTGGTTCCAGACCAGCTCTCCGGGGACCCCAGAGCCCCTAGTCCCACATCCGGAGGACGACAGTATCTTTGAGCCTCTGCTTGACTTCCCTCTACTACAAGGACTCCGGGTCAGTGGGGCGGAGGGTCTTGGGGGCTTCTAG |
Alignment (splice site sequences are in lowercase)
Human agCTGCCCGGACCCAGACAGGGACAGTGGCTGGGGCAGACATCTGAAATGAGCCGTGCTCTCAC-CCCACATCCTTGTGT Chimp .a......................G............C..........................-............... Gorilla .a......................G...A....................A..............-............... Orangutan .a.....T...............TG.......................A...............-............... Rhesus .a.....T.....T..........G.......................G.........C.....-............... Baboon .a.....T.....T..........G.......................G.........C.....-............... Marmoset ca.....A.A..............T.................A..........------------............... Lemur ta......CA..T...GA.................T...T...........A..A...C...C.-..A.TG...-..... Mouse .a..A..TCAT.T.T.GA...A..GA..TG...A........G...G.CA.A..A...CG.ATTGTGT.T....C..... Cow ca.CA...CAGTG...GA...............AA................A..AG..C.....-.A......T..A... Human GCAGGATGCCTTCCAGCTGCCCGGCCTT---------GGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGATG Chimp ............................---------........................................... Gorilla ............................---------.........................................C. Orangutan ............................---------.........................................CA Rhesus ......G..............T.....G---------....T....................................C. Baboon ......G....................G---------....T....................................C. Marmoset ......G...............A....C---------.........................................GA Lemur C.....GA..............A.....CGGGACCCT....T................A..........A........A. Mouse T.....AA........T.A...A..T.CTGGGACTCCA..GT....T.A.........A....T.AA........A..C- Cow -......AT...A.........A.....CGGGACCCC....T................A....G..............A. Human AAAAGAAGCCGGTGCCCTGGGAGTCCCATAACAGCTCAGAGACCTGTGGCCTCCCCACTCTGGTCCAGACCTATGTGCTC Chimp .G.....................................................T........................ Gorilla .G........A..................................................................... Orangutan .G....................A............................................A............ Rhesus .G........AC.................................................................... Baboon .G........AC.................G...........................................C...... Marmoset .G.......................T.T.........C.....T........................C........... Lemur .G.......T..G.............AG.G...............---..........C..................... Mouse --.....A...ACC.A......T...---G.A.....T.G..ATG..A....T..AG.C.....T...G........... Cow .G........A.G.............A..GC........G.C..G..A.....T....C..T......G........... Human CAGGGGGACCCAAGAGCAGTTTCCACCCAGCCCCAATCCCAGTCTGGCACCAGCGATCAGGTCCTTTATGGGCAGCTGCT Chimp ...................C............................................................ Gorilla ...................C............................................................ Orangutan ...................C............................................................ Rhesus ..........T........C....G.............................A..........C..C........... Baboon ..........T........C....G...................C.........A..........C..C........... Marmoset ...A...........A...C..................................A.......................G. Lemur ..A..........A.....C...T........A..GG..G.A...A..........C.C.........C......G.... Mouse ..A..A..T.......A.A......A....T....GC.T.CC...C....TG.T..C........C.....T...G.... Cow ................TGCCC...G.T.....T..GC.....C......A......C.....G.....C.T....G.... Human GGGCAGCCCCACAAGCCCAGGGCCAGGGCACTATCTCCGCTGTGACTCCACTCAGCCCCTCTTGGCGGGCCTCACCCCCA Chimp .........................................................T...................... Gorilla ................................................................................ Orangutan ................................................................................ Rhesus ..........................................C..................................... Baboon ..........................................C..................................... Marmoset ......T..........................C...............................G....G...G..... Lemur .............G.......------......C.......A......T...........T....G.........T.... Mouse T.AG........C........AGT.AT...G..CA.T....C.......................G.....C......T. Cow ............GG..........T........C........C.....A................A.......T...... Human GCCCCAAGTCCTATGAGAACCTCTGGTTCCAGGCCAGCCCCTTGGGGACCCTGGTAACCCCAGCCCCAAGCCAGGAGGAC Chimp ................................................................................ Gorilla ................................................................................ Orangutan .........................................C...................................... Rhesus .........................................C...................................... Baboon .........................................C...................................... Marmoset ..A.T....................................C..............G....................... Lemur .........GT.....................A...........A..T...CT...C..T...A...............T Mouse ....T..A..T.....A...A..........TT.A..A...CA..A....T.T..GC...A.C.T....A......A..T Cow .T...........C..................A.....T.TCC........CA.AGC...T..T....CAT.C....... Human GACTGTGTCTTTGGGCCACTGCTCAACTTCCCCCTCCTGCAGGGGATCCGGGTCCATGGGATGGAGGCGCTGGGGAGCTT Chimp ................................................................................ Gorilla .....................................................................T.......... Orangutan ........................G............................G.............G............ Rhesus ........................G.........................A.........G......G.....AA..... Baboon ........................G...................................G......G.....AA..... Marmoset ........................G........................A..........G......G.T.......... Lemur .......................AG....................C...A..........G......GA..A...G.... Mouse .................T.CAT.TG.T..T......T.T......C...A.........AG.T..A.AA.AA...G.T.. Cow ...A..A......A...T.....TG.......T..A..A..A..AC........AG....GC.....GT..T...G.... Human CTAG Chimp .... Gorilla .... Orangutan .... Rhesus .... Baboon .... Marmoset .... Lemur .... Mouse .... Cow ....
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | uc001ctt.2_5_16 | chr1:52859475 | - | AG | GG | (A1) shift; increase; inframe | constitutive | ORC1 | NP_004144.2 | NM_004153.3 | origin recognition complex subunit 1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 52859115 | 52859475 | - | AG | ACTTAGGTAACCCTCAGATGTCCCAGCAGACTTCATGTGCCTCCTTGGATTCTCCAGGAAGAATAAAACGGAAAGTGGCCTTCTCGGAGATCACCTCACCTTCTAAGAGATCTCAGCCTGATAAACTTCAAACCTTGTCTCCAGCTCTGAAAGCCCCAGAGAAAACCAGAGAGACTGGACTCTCTTATACTGAGGATGACAAGAAGGCTTCACCTGAACATCGCATAATCCTGAGAACCCGAATTGCAGCTTCGAAAACCATAGACATTAGAGAGGAGAGAACACTTACCCCTATCAGTGGGGGACAGAGATCTTCAGTGGTGCCATCCGTGATTCTGAAACCAGAAAACATCAAAAAGAG |
| Chimp | panTro2 | chr1 | 53261382 | 53261742 | - | GG | ACTTAGGTAACCCTCAGATGTCCCAGCAGACTTCATGTGCCTCCTTGGATTCTCCAGGAAGAATAAAACGGAAAGTGGCCTTCTCGGAGATCACCTCACCTTCTAAGAGATCTCAGCCTGATAAACTTCAAACCTTGTCTCTAGCTCTGAAAGCCCCAGAGAAAACCAGAGAGACTGGACTCTCTTATACTGAGGATGACAAGAAGGCTTCATCTGAACATCGCATAATCCTGAGAACCCGAATTCCAGCTTCGAAAACCACAGACATTAGAGAGGAGAGAACACTTACCCCTATCAGTGGGGGACAGAGATCTTCAGTGGTGCCATCCGTGATTCTGAAACCAGAAAACATCAAAAAGAG |
| Orangutan | ponAbe2 | chr1 | 177353853 | 177354213 | + | GG | GCTTAGGTAACCCTCAGATGTCCCAGCAGACTTCATGTGCCTCCTTGGATTCTCCAGGAAGAATAAAACGGAGAGTGGCCTTCTCGGAGATCACCTCACCTTCTAAGAGATCTCAGCCTGATAAACTTCAAACCTTGTCTCCAGCTCTGAAAGCCCCAGAGAAAACCAGAGAGACTGGACTCTCTTATACTGAGGATGACAAGAAGGCTTCACCTGAATGTTGCGTAATCCTGAGAACCCGAATTCCAGCTTTGAAAACCATAGACATTAGAGAGGAGAGAACACTTACCCCTATCAGTGGGGGACAGAGATCTTCAGTGGTGCCATCCGTGATTCTGAAACCAGAAAACATCAAAAAGAG |
| Rhesus | rheMac2 | chr1 | 55228661 | 55229018 | - | GG | GCTTAGGTAACCCTCAGATGTCCCAGCAGACTTCACGTGCCTCCTTGGATTCTCCAGGAAGAATGAAACGGAAAGTGGCCTTCTCGGAGATCACCTCACCTTCTAAGAGATCTCAGCCTGATAAACTTCAGACCTTGTCTCCAGCTCTGAAAGCCCCAGAGAAAACCAGAGAGACTGGACTCTGTTATACTGAGGATGATGAGGCTTCACCCAAACGTTGCATAATCCTGAGAACCCGAATTCCAGCTTCGAAAACCATAGACATTAAAGAGGAGAGAATACTTACCCCTATCAGAGGGGGACAGAAATCTTCAGTGATGCCATCTGTGATTCTGAAACCAGAAAACATCAAAAAGAG |
| Baboon | papHam1 | scaffold6699 | 47359 | 47716 | - | GG | GCTTAGGTAACCCTCAGATGTCCCAGCAGACTTCACGTGCCTCCTTGGATTCTCCAGGAAGAATGAAACGGAAAGTGGCCTTCTCGGAGATCACCTCACCTTCTAAGAGATCTCAGCCTGATAAACTTCAGACCTTGTCTCCAGCTCTGAAAGCCCCAGAGAAAACCAGAGAGACTGGACTCTGTTATACTGAGGATGATGAGGCTTCACCCAAACGTTGCATAATCCTGAGAACCCGAATTCCAGCTTCGAAAACCATAGACATTAAAGAGGAGAGAATACTTACCCCTATCAGAGGGGGACAGAAATCTTCAGTGATGCCATCTGTGATTCTGAAACCAGAAAACATCAAAAAGAG |
| Lemur | micMur1 | scaffold_5022 | 61445 | 61820 | - | GG | GCTTAGGTTTACCAAGGACACCTAACACTAGGATGTGCCAGCAAACTTCATCTGCCTCCTTGAGTTCTCCAGAAGGAAATAAACGGAAAGTGGCTTTCTCCGAGATCACCTCACCTTCTAAGAGGTGTCAGCCTGATAAACTTCAGACCCTGTCTCCAGTTCTGAAAGCCCCAGAGAAAACTGGAAAGATGCCTCTCTCTTGTACTGGTGCTGACAAGAAGGCTTCACCTGAATGTCACATGATCCTGAGAGCCCGAATCACTGCTTTGGAAGCCACAGAAACTAGCAAGGAAAGAACACTTTCCCCTATCAGTGGGGGTCAGAGATCCTCAGTGATGGCTTCAGTGATTCTGAAACCAGAAAGCATCAAAAAGAG |
| Galago | otoGar1 | scaffold_83145.1-54844 | 20349 | 20721 | - | GG | GCTTAGGTTTCCCTAGGACACCTAACACGAGGATGTCGCAGCAGACTTCATGTGCCTCCTCGGGTTCTCTGGGAGTGAGTAAACGGAAAATGGCCCTCTCTGAGATCACTTCACCTTCTAAGAGGTCCCAGCCTGATAAACTTCAAACCTTATCTCCAGTTCGGAAAGCCCCAGAGAAAAGTGGAAAGATTCGACTCTTTGGTACTAAAGATGACAAGAAGGCCTTACCCGAACATCACATGATCCTGAGAACCCGAATCTCAGCTTTGGAAACCACAGAAGTTAGTGGGGACACAACACTTAACCCTGTCAGCGGGGGATGGAGATCCTCAGAGGTGCCTTCCATCATCCTGAAGCCAGTAATCAAAAAGAG |
| Mouse | mm9 | chr4 | 108269735 | 108270083 | + | AG | GCTTAGGTTTTACCAGGAAGCCTAACACGAGGTGGTCAAAGAAGAGCTCGTGTGACTCCTTGGATTATCAAAAAACATCTAAAAGAAGAGCAGCCTTCTCTGAGACCACCTCGCCTCCTAAAAAGCCTAATAAACCTCGTGAAATCAAGCCCTCTTCAGCTTTGGAAACTCGAGTTAAAAATGGACAAACTCAACCTTTTTGTGCCAAAAGTAGTGTGGTTCTGAGAGCCCGGAACCCAGCTATGACGACCACAAAGCTTGGTGTGGACAACACACTTAGCCCTATCAGGAATGGGTTGAGATCTTCAGTGGTGCCCTCTGGGGGTCTGACACCAGTATACATTAGGAG |
| Cow | bosTau4 | chr3 | 100723002 | 100723377 | + | GA | ACTTAGGTTTCCCTAGGACTCCTAACACAAGGATTTCCCCGGCAGCTTCGTGTGCCTCATTGGATTCTCCTGGAAGAATGAAACGGAAAGTGGCCTTCTCTGAGGTCATGTCACCTTCAAAGAGGTCTCTGCCTGATGGTTTTCAGACCTCATCTCCAGCTCTGAAAGCCCCAGAGAAAACTGGAGAGATTCAACACTCCTGTACCAAAGATGCCAAGAAGACCTCACCTGATCATGGCATGATCCTGAGAGCTCGAGCCCCAGCTTTGAAAATAACAGAGACTAGTGAAGAAAGAACACTTACTCCTATCGGCGGGGGACGGAAATCCTCAGTGGTGCCTTCTGTGATTCTGAAACCAGAATACATCAAAAGAAG |
| Dog | canFam2 | chr15 | 11988227 | 11988602 | + | GG | GATTAGGTTTCCCTAGGACACCTAGCACTAGGATTTCCCAGCAGAATTCAGGGGCCTTGTTGGATTCTCCCGGAAGAAGTAAAAGAAAAGTGGCCTTATCTGAGATCACCTCACCTACTAAGAGGTCTCAGCCTGATGAACTTCATACCTTGTCTCCAGCTCTGAAAACTCCACAGAAAACTGGAGAGATTCACAGCTCATGTGCCAGGAATGACAAGAAGGCATCACCTGACTGTCAGAGAATCCTGAGAACCCGAGTCCCAGCTTTGAATACCATGGAGATTATTGAGGAAAGAACACTTAAGCCTATCTACAGGGGCTGGCCATCCTCGGTGGTGCCTTCCGTGATTCTGACACCAAAAAACATCAAAAAGAG |
Alignment (splice site sequences are in lowercase)
Human agACTTAGG---------------TAACCCTCAGATGTCCCAGCAGACTTCATGTGCCTCCTTGGATTCTCCAGGAAGAA Chimp g........---------------........................................................ Orangutan g.G......---------------........................................................ Rhesus g.G......---------------............................C........................... Baboon g.G......---------------............................C........................... Lemur g.G......TTTACCAAGGACACC....A..AG.....G......A.......C..........AG........A.G... Galago g.G......TTTCCCTAGGACACC....A.GAG......G......................C..G.....TG...GTG. Mouse ..G......TTTTACCAGGAAGCC....A.GAG.TG...AA..A...GC..G....A...........A..A.AA..C.T Cow ga.......TTTCCCTAGGACTCC....A.AAG...T....C.GCAG....G........A...........T....... Dog g.GA.....TTTCCCTAGGACACC..G.A..AG...T..........A....G.G....TG...........C....... Human TAAAACGGAAAGTGGCCTTCTCGGAGATCACCTCACCTTCTAAGAGATCTCAGCCTGATAAACT--------TCAAACCT Chimp ................................................................--------........ Orangutan .........G......................................................--------........ Rhesus .G..............................................................--------...G.... Baboon .G..............................................................--------...G.... Lemur AT..............T.....C.......................G.G...............--------...G...C Galago GT.........A.....C....T........T..............G..C..............--------........ Mouse CT...A.A.G..CA........T....C......G...C....A.------.....A......CTCGTGAAA....G..C Cow .G....................T...G...TG........A.....G....T.......GGTT.--------...G.... Dog GT...A.A...........A..T...............A.......G............G....--------...T.... Human TGTCTCCAGCTCTGAAAGCCCCAGAGAAAACCAGAGAGACTGGACTCTCTTATACTGAGGATGACAAGAAGGCTTCACCT Chimp ......T......................................................................T.. Orangutan ................................................................................ Rhesus ................................................G...............T---G..........C Baboon ................................................G...............T---G..........C Lemur .........T.....................TG..A...TGCCT.......G.....GT.C................... Galago .A.......T..G.................GTG..A...T.C......T.GG....A.A..............C.T...C Mouse --...T.....T..G..A.T.G..TT....ATG..C.A...CA..CT.T..G.G.CA.AA-------------------- Cow CA.............................TG......T.CA..A...C.G...CA.A....C.......A.C...... Dog .................A.T...C.......TG......T.CACAG...A.G.G.CAG.A.............A...... Human GAACATCGCATAATCCTGAGAACCCGAATTGCAGCTTCGAAAACCATAGACATTAGAGAGGAGAGAACACTTACCCCTAT Chimp ..............................C...............C................................. Orangutan ...TG.T..G....................C......T.......................................... Rhesus A...G.T.......................C........................A...........T............ Baboon A...G.T.......................C........................A...........T............ Lemur ...TG..A...G.........G.......CA.T....T.G..G...C...A.C...CA....A.........T....... Galago .......A...G.................CT......T.G......C...AG....T.G...C.C........A....G. Mouse ----G.A.TG.GG.T......G....G.ACC.....AT..CG....C.A.GC..G.T.T...C.AC.......G...... Cow ..T...G....G.........G.T...GCCC......T.....TA.C...G.C...T..A..A...........T..... Dog ..CTG..AG.G................G.CC......T...T.....G..G....TT.....A..........AG..... Human CAGTGGGGGACAGAGATCTTCAGTGGTGCCATCCGTGATTCTGAAACCAGAAAACATCAAAAAGAGgt Chimp .................................................................... Orangutan .................................................................... Rhesus ...A..........A..........A.......T.................................. Baboon ...A..........A..........A.......T.................................. Lemur .........T........C......A..G.T..A...................G.............. Galago ...C......TG......C....A......T...A.C..C.....G....T.---............. Mouse ...GAAT..GTT..................C..T.G.GG.....C.....T.T....T---.G..... Cow .G.C.......G..A...C...........T..T..................T.........GA.... Dog .TACA....CTG.CC...C..G........T.............C....A..................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5 | uc010ork.1_15_16 | chr1:78338686 | + | AG | AA | (A1) shift; increase; inframe | alternative | FAM73A | B7ZLZ8 | BC144167.1 | family with sequence similarity 73, member A | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 78338686 | 78338805 | + | AG | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG |
| Chimp | panTro2 | chr1 | 79201210 | 79201329 | + | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG |
| Gorilla | gorGor1 | Supercontig_0542555 | 675 | 794 | + | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG |
| Orangutan | ponAbe2 | chr1 | 151258906 | 151259025 | - | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTCTATGATTTATGTTGCTTTTTTAAG |
| Rhesus | rheMac2 | chr1 | 80709557 | 80709676 | + | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTCTATGATTTATGTTGCTTTTTTAAG |
| Baboon | papHam1 | scaffold11774 | 55224 | 55343 | - | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTCTATGATTTATGTTGCTTTTTTAAG |
| Marmoset | calJac1 | Contig317 | 462421 | 462540 | + | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGCCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTCTATGATTTATGTTGCTTTTTTAAG |
| Lemur | micMur1 | scaffold_1980 | 4086 | 4205 | + | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGCCCAGTCCTAGCCTGGGGCTTTCTGGGTCCTAGAAATTCTCTCTATGATTTATGTTGCTTCTTTAAG |
| Mouse | mm9 | chr3 | 151941857 | 151941976 | - | AA | CAGATCTCAGATGGATTTTTCGCTCATTTTTATGCCATTTGTGAGCATGTCAGCCCTGTTTTAGCCTGGGGCTTCTTGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAG |
| Dog | canFam2 | chr6 | 72089743 | 72089862 | - | AA | CAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAGCAAATCAGCCCTGTCCTTGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAG |
Alignment (splice site sequences are in lowercase)
Human agCAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTG Chimp .a.............................................................................. Gorilla .a.............................................................................. Orangutan .a.............................................................................. Rhesus .a.............................................................................. Baboon .a.............................................................................. Marmoset .a.....................................................C........................ Lemur .a.....................................................C..A..................C.. Mouse .a......T.............C..T....................G..TG....C.....TT.............C... Dog .a............................................G..A.....C........T............... Human GGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAGgt Chimp ............................................ Gorilla ............................................ Orangutan .................C.......................... Rhesus .................C.......................... Baboon .................C.......................... Marmoset .................C.......................... Lemur .................C.................C........ Mouse .................C.....C...........C........ Dog .................C.....C...........C........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6 | uc001flb.2_9_11 | chr1:155583216 | + | AG | TG | (A2) shift; increase; frameshift | alternative | MSTO1 | Q9BUK6-7 | AK056128.1 | misato homolog 1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 155583216 | 155583357 | + | AG | CCACAGACTAATGGTGGTTTTGGCTTTGTTCTGGCAGCCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATGCATGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACAGCAGCAGCCTGGAGTCATGAG |
| Chimp | panTro2 | chr1 | 134788762 | 134788903 | + | TG | CCACAGACTAATGGTGGTTTTGGCTTTGTTCTGGCAGTCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATGCATGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACAGCAGCAGCCTGGAGTCATGAG |
| Orangutan | ponAbe2 | chr1 | 95768097 | 95768238 | - | TG | CCACAGACTAATGGTGGTTTTGGCTTTGTTCTGGCAGCCAGCTCACCCCAGGGACACCTCCACCCTCCGCCCTTCATGCATGTACCACTGGGGAAGAAGTCTTGGCTCAGTATTTACAACAGCAGCAGCCTGGAGTGATGAG |
| Rhesus | rheMac2 | chr1 | 134191728 | 134191869 | + | TG | CCACAGCCTAATGGTGGTTTTGGCTTTGTTCTGGCAGCCAGCTCACCCCAGGGACACCTCCACCCTCCTCCCTTCACGCATGTACCACTGGGGAAGAAGTCTTGGCTCAGTATTTACAACAGCAGCAGCCTAGAGTCATGAG |
| Mouse | mm9 | chr3 | 88714236 | 88714370 | - | AG | CCAAAGGTAAATGCGGTTTTTTCCTTGCAGTAAGCTCAACCCAGGGACACCTCTGCCCTCTGCTCTCCACGCATGCGCCTCTGGAGAAGAAGTCTTGGCCCAGTACTTACAGCAGCAGCATCCTAGAGTCTTGAG |
| Cow | bosTau4 | chr3 | 16379677 | 16379818 | - | TG | CCACTGATTAAAGGTGGTTTTGGCTTTGTTCTGGCAGTCAGCTCGCCCCCGGGACACCTCTGCCCTCCCCGCTCCATGCGTGCGCCACTGGGGAAGAAGTCTTGGCCCAGTATTTGCAGCAGCAGCAGCCTAGAGTCAGGAG |
| Dog | canFam2 | chr7 | 44974039 | 44974180 | - | TG | CCATGGACTTAAAGGCAGTTTTGGCTTTGTTCTGCAGTCAGCTCGTCCCGGGGACACCTCTGCCTTCGCCACTCCATGCCTGCACCGCCGGGGAGGATGTCCTGGCTCAGTATTTACAGCAGCAGCAGCCTCGGGTCAGGAG |
Alignment (splice site sequences are in lowercase)
Human agCCACAGAC-TAATGGTGGTTTTGGCTTTGTTCTGGCAGCCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCAT Chimp t.........-.............................T....................................... Orangutan t.........-...........................................................C......... Rhesus t.......C.-...........................................................CT.......C Mouse ...--------C..A...AAA.GC..T...T.C..T....TA......A..............TG........T..C..C Cow t.....T..T-...A.........................T......G....C..........TG.....CC.G..C... Dog t....TG...T...A..CA................-....T......GT...G..........TG..T..GC.A..C... Human GCATGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACAGCAGCAGCCTGGAGTCATGAGgt Chimp ................................................................... Orangutan .....................G.....................................G....... Rhesus .....................G................................A............ Mouse .....CG..T....A......G.......C.....C.....G........T...A.....T...... Cow ..G..CG..............G.......C........G..G............A......G..... Dog ..C..C...G.C.....G..TG..C................G............C.G....G.....
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7 | uc001gli.1_6_25 | chr1:177930074 | - | AG | GG | (A3) shift; decrease; inframe | alternative | SEC16B | NP_149118.2 | NM_033127.2 | protein transport protein Sec16B | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 177929926 | 177930074 | - | AG | ATGTCTCCTCAGCTGGTCCCAAAGCACCCATGAAGTTCTACATCCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGCATGTAGGTCCCAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG |
| Chimp | panTro2 | chr1 | 157548953 | 157549101 | - | GG | ATGTCTCCTCAGCTGGTCCCAAAGCACCCATGAAGTTCTACATCCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGCGTGTAGGTCCCAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG |
| Gorilla | gorGor1 | Supercontig_0597956 | 664 | 812 | + | GG | ATGTCTCCTCAGCTGGTCCCAAAGCACCCGTGAAGTTCTACATCCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGCGTGTGGGTCCNAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG |
| Orangutan | ponAbe2 | chr1 | 72885805 | 72885953 | + | GG | ATGTCTCATCAGCTGGTCCCAAAGCACCCATGAAGTTCTACATCCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGCGTGTAGGTCCCAGCTTTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG |
| Rhesus | rheMac2 | chr1 | 207547781 | 207547929 | - | GG | ATGTCTCCTCAGCTGGTCCCAAAGCGCCCATGAAGTTCTACGTTCCTCATGCTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGTGTGTAGGTCCCAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG |
| Baboon | papHam1 | scaffold16654 | 27993 | 28141 | + | GG | ATGTCTCCTCAGCTGGTCCCAAAGCGCCCATGAAGTTCTACGTTCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGTGTGTAGGTCCCAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG |
| Marmoset | calJac1 | Contig2688 | 176345 | 176493 | + | GT | ATGTCTCCTCAGCTGGTCCCAAAGCACCCATGAAGTTCTACGTCCCTCATGTTCCTGTGAATTTTGGGCCAGGAGGTCAGTTGGTGTGTGTGGGTCCCAGCTCTCTCACTGACGGGCAAGCAGCCCTCGTTGAAGTGCACAGCATGGAG |
| Tarsier | tarSyr1 | scaffold_18420 | 16461 | 16609 | + | GG | ATGTCTCCACAGCTGGTTCCAAAGCACTTGTGAAGTTCTACAACCCTCACGTACCTGTGAGTTTTGGGCCAGGAGGTCAGCTGGTGTGTGTGGTGCCCAGTTCCCCCATGGATGGGCAGACAGCTCTTGTGGAACTGCACAGCATGGAA |
| Lemur | micMur1 | scaffold_1609 | 147389 | 147537 | + | GG | ATGTCTCTGCAGCTGATCCCAAAGCACCCATGAAGTTCTATGGCCCTCATGTACCTGTGAGTTTTGGACCAGGAGGTCAGCTGGTGTGTGTGGCGCCCAGCTCGCCCACTGGTGGGCGAACAGCCCTTGTTGACCTGCACAGCGTGGAG |
| Galago | otoGar1 | scaffold_15320.1-212087 | 194900 | 195048 | + | GA | ATATCTCCACAGCTGGTCCCAAAACACCCATGAAGTTCTATATCCCTCATGTACCTGTGAGTTTTGGACCTGGAGGTCAGCTGGTGTGTGTGGCTCCCAGCTCTTTTATTGATGAGCAATCTGCCCTTGTTGAACTGCACAGCATGGAG |
| Mouse | mm9 | chr1 | 159465495 | 159465643 | + | TG | ACACCTCAGCGACAGTTCCAAAGGCACCTATGAGGTTCTATGTTCCCCATGTGTCTGTGAGCTTTGGGCCAGGAGGCCAGCTAGTGTGTGTCCCCCCCAACTCTCCTGCTGATGGACAAACGGCCCTCGTTGAAGTGCACAGCATGGAG |
| Cow | bosTau4 | chr16 | 57155708 | 57155856 | - | GG | ACATCTCAGCAGCTGGTCCCAAGGAACCCATGAAGTTCTATGTCCCTCACATGCCTGTGAGTTTTGGGCCAGGAGGTCAGCTGGTGTGTGTGAGTCCCAGCTCTCCCAGTGATGGACAGACAGCCCTTGTTGAACTGCACAGCATGGAG |
| Dog | canFam2 | chr7 | 24676283 | 24676431 | + | GA | ATGTCTCGGCAGCAGGTCCTAAGGAGCCCATGAAATTCTACATCCCTCATGTGCCTGTGAGTTTTGGGCCAGGAGGTCAGCTGGTGTATGTGAGTCCCAGCTCCCCCAGAGATGGACAGACGGCCCTAGTTGAACTGCACAGCATGGAG |
Alignment (splice site sequences are in lowercase)
Human agATGTCTCCTCAGCTGGTCCCAAAGCACCCATGAAGTTCTACATCCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTC Chimp g............................................................................... Gorilla g..............................G................................................ Orangutan g........A...................................................................... Rhesus g..........................G...............G.T.......C.......................... Baboon g..........................G...............G.T.................................. Marmoset gt.........................................G..................A...T............. Tarsier g.........A........T.........TTG............A......C..A...........T............. Lemur g........TG......A........................TGG.........A...........T..A.......... Galago ga..A.....A..............A................T...........A...........T..A..T....... Mouse t..CAC...AG.GA.A.T...A..G.....T....G......TG.T..C.....GT.......C..T...........C. Cow g..CA....AG.............G.A...............TG.......CA.G...........T............. Dog ga.......GG....A.....T..G.AG........A.................G...........T............. Human AGCTGGTGCATGTAGGTCCCAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAGgt Chimp .........G............................................................... Gorilla .........G...G.....N..................................................... Orangutan .........G..............T................................................ Rhesus ........TG............................................................... Baboon ........TG............................................................... Marmoset ..T.....TG...G.............T.....................C......G................ Tarsier ........TG...G.TG.....T..C....TG..T.....GA....T.....G.................A.. Lemur ........TG...G.CG........G.......GT....G.A.............C.........G....... Galago ........TG...G.C..........TTT.T...T.A....T.T............................. Mouse ....A...TG...CCCC....A......TG....T..A...A.G.....C......G................ Cow ........TG...GA...............G...T..A..GA............................... Dog ........T....GA..........C....GA..T..A..GA.G.....A.......................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8 | uc001how.2_33_83 | chr1:225347031 | + | AG | AA | (A3) shift; decrease; inframe | alternative | DNAH14 | NP_001364.1 | NM_001373.1 | dynein heavy chain 14, axonemal |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr1 | 225347031 | 225347187 | + | AG | TCTTTCTGAAGCAGATGAAACCTTGATTGTTATCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTCCCACTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTGAAAGTAAATCAACTTGCCTTGGAG |
| Chimp | panTro2 | chr1 | 205772224 | 205772380 | + | AA | TCTTTCTGAAGCAGATGAAACCTTGATTGTTGTCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTCCCGCTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTGAAAGTAAATCAACTTGCCTTGGAG |
| Orangutan | ponAbe2 | chr1 | 24572514 | 24572670 | - | AA | TCTTTCTGAAGCAAATGAAACCTTGATTGTTATCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTCCCACTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTAAAAGTAAATCAACTTGCCTTGGAG |
| Rhesus | rheMac2 | chr1 | 145291465 | 145291621 | - | AA | TCTTTCTGAAGCAGATGAAACCTTGATTGTTATCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTCCCACTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTAAAAGTAAATCAACTTGCCTTGGAG |
| Baboon | papHam1 | scaffold38439 | 3649 | 3805 | - | AA | TCTTTCTGAAGCAGATGAAACCTTGATTGTTATCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTTCCACTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTAAAAGTAAATCAACTTGCCTTGGAG |
| Tarsier | tarSyr1 | scaffold_224456 | 1768 | 1926 | + | AA | TCTTGCTGAAGCAGATGAAACTCTGATCATTATTGAGGCTATAAGAGAAGCTAATTTACCAAAATGTCCTCCTGAAGATGTCCCGCTTTTTGAAAATATTATAGGAGGTATATTTCCAGGAGTGTCAGTTTTAAAAGTAAATCAACTTGCCCTTGGAAG |
| Galago | otoGar1 | scaffold_15462.1-40686 | 5626 | 5782 | - | AA | TCTTTCTGAAGCAGAGGAAACGCTGATCATTATTGAGGCTGTAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTTCCACTTTTTGAAAGGATTATAGGAGATATTTTTCCTGGAGTGACAGTTTTAAAAGCAAATCAACTTGCATTGGAG |
| Mouse | mm9 | chr1 | 183596490 | 183596646 | + | CA | CCTCTCTGAGTTAGACGAGTCCCTCATCCTCATCGAGGCCATCCGAGAAGCCAGTTTGTCCAAGCTCCTTCCGGAAGATGTCCTACCTTTTGAAAAGATCATAGAAGATGTTTTTCCTAGAATAACGGTTTCAAAAATAAATCACCTTACCTTGGAG |
| Dog | canFam2 | chr7 | 42456886 | 42457042 | - | CA | TCTTTCTGAAACAGATGAGACTCTGATCATTATTGAGGCTATAAGAGAAGCTAGTCTGCCAAAATTTCTCCCTAAAGATGCCCCACATTTTGAAAAGATTATAAGAGATTTTTTTCCTGGAGCAACATTTTCAACAGCAAATCAAATTGCCTTGGAG |
Alignment (splice site sequences are in lowercase)
Human agTCTTTCTGAAGCAGATGAAACCTTGATTGTTATCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGA Chimp .a...............................G.............................................. Orangutan .a.............A................................................................ Rhesus .a.............................................................................. Baboon .a.............................................................................. Tarsier .a....G................TC....CA....T...................A...A.................... Galago .a...............G.....GC....CA....T......G..................................... Mouse caC..C.....GTT...C..GT..C.C..CC.C........C..CC.......C......T.C..GCTC.T...G..... Dog ca..........A.......G..TC....CA....T.....................C.........T..TC...A.... Human TGTCCCACTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTGAAAGTAAATCAACTTGCCTT--GGA Chimp ......G....................................................................--... Orangutan ......................................................A....................--... Rhesus ......................................................A....................--... Baboon ...T..................................................A....................--... Tarsier ......G......................G...A.......G....T.......A..................C.TG.A. Galago ...T.............GG....................T.G............A....C............A..--... Mouse .....T..C.........G..C....A....G.......TAG.A.A..G....CA...A.......C...A....--... Dog ..C.....A.........G......A.....T.......T.G..CA...T...CA.C..C.......A.......--... Human Ggt Chimp ... Orangutan ... Rhesus ... Baboon ... Tarsier ... Galago ... Mouse ... Dog ...
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9 | uc002rin.2_3_8 | chr2:27317342 | + | AG | GG | (A1) shift; increase; inframe | alternative | KHK | P50053-2 | BX427548.2 | ketohexokinase | NAGNAG, dbSNP:rs74537742 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr2 | 27317342 | 27317479 | + | AG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACACAGTCTTTCAGACCACAGGCTCCGTCCCCATCGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTATGACAG |
| Chimp | panTro2 | chr2a | 27685036 | 27685173 | + | GG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACACAGTCTTTCAGACCACAGGCTCCGTCCCCATCGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTATGACAG |
| Gorilla | gorGor1 | Supercontig_0000008 | 34173 | 34310 | + | GG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACATGGTCTTTCAGACCACAGGCTCCGTCCCCATCGCCACAGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTATGACAG |
| Orangutan | ponAbe2 | chr2a | 85042113 | 85042250 | - | GG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACACGGTCTTTCAGACCACAGGCTCCGTCCCCATCGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTATGACAG |
| Rhesus | rheMac2 | chr13 | 27047891 | 27048028 | + | GG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACACGGTCTTTCAGACCACGGGCTCCGTCCCCATCGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTACGACAG |
| Baboon | papHam1 | scaffold2792 | 115698 | 115835 | + | GG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACACGGTCTTTCAGACCACGGGCTCCGTCCCCATCGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTACGACAG |
| Marmoset | calJac1 | Contig652 | 515297 | 515434 | + | GG | CAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTCCGCTACATGGTCTTTCAGACCACAGGCTCCGTCCCCATCGCCACAGTGATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATATTATGACAG |
| Lemur | micMur1 | scaffold_1117 | 236307 | 236444 | + | GG | CAGTTTTGTCCTGGATGACCTCCGTCGCTATTCTGTGGACCTACGCTACACAGTCTTTCAGACCACAGGCTCCGTCCCCATTGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTCCAACAG |
| Galago | otoGar1 | scaffold_93321.1-65426 | 3319 | 3456 | + | GG | CAGTTTTGTCCTGGATGACCTCCGTCGCTATTCTGTGGACCTACGCTACACAGTCTTTCAGACCATAGGCTCCGTTCACATCGCCACAGTCATCATCAACGAGGCCAGTGGTAGTCGCACCATCCTATACTCTGACAG |
| Mouse | mm9 | chr5 | 31229058 | 31229195 | + | GG | CAGTTTTGTCCTGGATGACCTCCGCCAACATTCTGTGGACTTACGATATGTGGTCCTTCAGACCGAGGGCTCCATCCCCACTTCTACAGTCATCATCAACGAGGCCAGCGGCAGCCGCACCATTCTGCACGCCTACAG |
| Cow | bosTau4 | chr11 | 74632728 | 74632865 | - | GG | CAGTTTTGTCCTGGACGACCTTCGCCGCTATTCTGTGGACCTCCGCTACATGGTCTTTCAGACCACGGGCTCCGTCCCCATCTCCACAGTCATCATCAGCGAGGCCAGCGGTAGCCGCACCATCCTACATGCCTACAG |
| Dog | canFam2 | chr17 | 24067520 | 24067657 | + | GG | CAGTTTTGTCCTGGATGACTTCCGCCGCTATTCCGTGGACCTCCACTACACAGTCTTTCAGACCACGGGCTCTGTCCCCATCTCCACGGTCATCATCAACAAGGCCAGTGGTAGCCGCACCATCCTACATGCCTACAG |
Alignment (splice site sequences are in lowercase)
Human agCAGTTTTGTCCTGGATGACCTCCGCCGCTATTCTGTGGACCTACGCTACACAGTCTTTCAGACCACAGGCTCCGTCCC Chimp g............................................................................... Gorilla g...................................................TG.......................... Orangutan g....................................................G.......................... Rhesus g....................................................G..............G........... Baboon g....................................................G..............G........... Marmoset g...........................................C.......TG.......................... Lemur g.........................T..................................................... Galago g.........................T........................................T.........T.A Mouse g...........................AAC...........T....A..TGTG...C........GAG......A.... Cow g................C.....T....................C.......TG..............G........... Dog g....................T.............C........C.A.....................G.....T..... Human CATCGCCACGGTCATCATCAACGAGGCCAGTGGTAGCCGCACCATCCTATACTATGACAGgt Chimp .............................................................. Gorilla .........A.................................................... Orangutan .............................................................. Rhesus ......................................................C....... Baboon ......................................................C....... Marmoset .........A..G......................................T.......... Lemur ...T.................................................CCA...... Galago .........A..........................T................C........ Mouse ..CTT.T..A....................C..C...........T..GC..GCCT...... Cow ....T....A..........G.........C..................C.TGCCT...... Dog ....T.................A..........................C.TGCCT......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10 | uc002rtl.2_7_13 | chr2:44023026 | + | AG | AA | (A1) shift; increase; inframe | alternative | DYNC2LI1 | NP_001180393.1 | NM_001193464.1 | cytoplasmic dynein 2 light intermediate chain 1 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr2 | 44023026 | 44023097 | + | AG | CAGGATCATGAATTAATTGACCCATTTCCGGTACCTCTGGTCATAATTGGAAGTAAATATGATGTTTTTCAG |
| Chimp | panTro2 | chr2a | 44818737 | 44818808 | + | AA | CAGGATCGTGAATTAATTGACCCATTTCCGGTACCTCTGGTCATAATTGGAAGTAAATATGATGTTTTTCAG |
| Gorilla | gorGor1 | Supercontig_0254163 | 538 | 609 | - | AA | CAGGATCGTGAATTAATTGACCCATTTCCAGTACCTCTGGTCATAATTGGAAGTAAATATGATGTTTTTCAG |
| Orangutan | ponAbe2 | chr2a | 67647682 | 67647753 | - | AA | CAGGATCGTGAATTAATTGACCCATTTCCAGTACCTCTGGTCATAATTGGAAGTAAATATGATATTTTTCAG |
| Rhesus | rheMac2 | chr13 | 43915623 | 43915694 | + | AA | CAGGATCGTGAATTAATTGACCCATTTCCAGTACCTCTGGTCATAATTGGAAGTAAATATGATATTTTTCAG |
| Baboon | papHam1 | scaffold268 | 185519 | 185590 | - | AA | CAGGATCGTGAATTAATTGACCCATTTCCAGTACCTCTGGTCATAATTGGAAGTAAATATGATATTTTTCAG |
| Marmoset | calJac1 | Contig1007 | 494477 | 494548 | - | AA | CAGGATCGTGAAATAATTGACCCATTTCCAGTACCTCTGGTCATTATCGGAAGTAAATATGATATTTTTCAG |
| Tarsier | tarSyr1 | scaffold_9653 | 15471 | 15542 | + | AA | CAGGATCGTGAATTAATTGATCCATTTCCAATACCTCTGGTCATAATTGGAAGTAAATATGATATTTTTCAG |
| Galago | otoGar1 | scaffold_87102.1-63967 | 48737 | 48808 | + | AA | CAGGATCGTGAATTAATTGACCCATTTCCAATACCTCTGGTCATAATTGGAAGTAAATATGATATTTTTCAG |
| Mouse | mm9 | chr17 | 85043442 | 85043513 | + | AA | CAGGACCGGGAATTAATTGACCCATTTCCAATACCTCTGGTCATTATTGGAAGTAAATATGATATTTTCCAG |
| Cow | bosTau4 | chr11 | 27368866 | 27368937 | + | AA | CAGGATCGTGAATTACTTGACCCATTTCCAATTCCTCTGGTCATAATCGGAAGTAAATACGATATTTTTCAG |
| Dog | canFam2 | chr10 | 49381939 | 49382010 | + | AA | CAGGACCGTGAATTAGTTGACCCATTTCTAATACCTCTGGTCATAATTGGAAGTAAATACGATATTTTTCAG |
Alignment (splice site sequences are in lowercase)
Human agCAGGATCATGAATTAATTGACCCATTTCCGGTACCTCTGGTCATAATTGGAAGTAAATATGATGTTTTTCAGgt Chimp .a.......G.................................................................. Gorilla .a.......G.....................A............................................ Orangutan .a.......G.....................A.................................A.......... Rhesus .a.......G.....................A.................................A.......... Baboon .a.......G.....................A.................................A.......... Marmoset .a.......G....A................A..............T..C...............A.......... Tarsier .a.......G............T........AA................................A.......... Galago .a.......G.....................AA................................A.......... Mouse .a.....C.GG....................AA.............T..................A....C..... Cow .a.......G.......C.............AA.T..............C...........C...A.......... Dog .a.....C.G.......G............TAA............................C...A..........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 | uc002smk.1_5_7 | chr2:74758694 | + | AG | GG | (A1) shift; increase; inframe | alternative | HTRA2 | O43464-3 | AF141306.1 | HtrA serine peptidase 2 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr2 | 74758694 | 74758829 | + | AG | GCTAGGGAACTGGGGGCTGTATCCCTGCAGGATGGGGAGGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGTCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGA |
| Chimp | panTro2 | chr2a | 76131026 | 76131161 | + | GG | GCTAGGGAACTGGGGGCTGTATCCCTGCAGGATGGGGAGGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGTCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGA |
| Orangutan | ponAbe2 | chr2a | 36168757 | 36168892 | - | GG | GCTAGGGAACTGGGGGCTGTATCCCTGCAGGATGGGGAGGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGTCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGA |
| Rhesus | rheMac2 | chr13 | 74761901 | 74762036 | + | GG | GCTAGGGAACTGGGGGATGTATCCCTGCAGGATGGAGAGGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGCCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGA |
| Baboon | papHam1 | Contig78359 | 121 | 256 | - | GG | GCTAGGGAACTGGGGGATGTATCCCTGCAGGATGGAGAGGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGCCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGA |
| Marmoset | calJac1 | Contig2284 | 188503 | 188638 | - | GG | GCTAGGGAACAGGGGGCTGTGTCCCTGCAGGATGGAGAAGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATCTCCTTTGCTATCCCTTCTGATCGCCTTCGAGAATTTCTGCGTCGTGGGGAACAGGAAA |
| Lemur | micMur1 | scaffold_1959 | 222426 | 222561 | + | GG | GCTAGGGAACAGGGGGCTGTGTCCTTGCAGGATGGGGAGGTGATCGGAGTGAACACTATGAAGGTCACAGCCGGAATCTCCTTTGCCATCCCTTCTGACCGCCTTCGAGAGTTTCTTCGTCGTGGGGAAAAGAAGA |
| Mouse | mm9 | chr6 | 83002692 | 83002827 | - | GG | GCTAGGGGACAGGGGGCTGTGTCCCTGCAGGATGGGGAGGTGATTGGAGTGAACACCATGAAGGTGACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGCCTTAGGGAGTTTCTGCATCGCGGGGAAAAGAAAA |
| Cow | bosTau4 | chr11 | 10420816 | 10420951 | - | GG | GTTAGAGAATAGTGGGCTGTGTCCCAACAGGATGGGGAGGTGATTGGGGTGAATACCATGAAGGTCACATCTGGAATCTCCTTTGCCATCCCTTCTGATCGCCTTCGAGAGTTTCTGCATCGTGGAGAAAAGAAGA |
| Dog | canFam2 | chr17 | 51680864 | 51680999 | - | GG | GCTAGGGATTAGTGGGCTCTGTTCCTGCAGGATGGGGAGGTGATTGGAGTGAATACCATGAAGGTCACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGCCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGA |
Alignment (splice site sequences are in lowercase)
Human agGCTAGGGAACTGGGGGCTGTATCCCTGCAGGATGGGGAGGTGATTGGAGTGAACACCATGAAGGTCACAGCTGGAATC Chimp g............................................................................... Orangutan g............................................................................... Rhesus g.................A..................A.......................................... Baboon g.................A..................A.......................................... Marmoset g...........A.........G..............A..A....................................... Lemur g...........A.........G...T...................C...........T..............C...... Mouse g........G..A.........G............................................G............ Cow g..T...A...TA.T.......G....AA....................G.....T...............T........ Dog g.........TTA.T.....C.G.T..............................T........................ Human TCCTTTGCCATCCCTTCTGATCGTCTTCGAGAGTTTCTGCATCGTGGGGAAAAGAAGAgt Chimp ............................................................ Orangutan ............................................................ Rhesus .......................C.................................... Baboon .......................C.................................... Marmoset ........T..............C........A.......G..........C..G.A... Lemur ....................C..C..............T.G................... Mouse .......................C...A.G..............C...........A... Cow .......................C.......................A............ Dog .......................C....................................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12 | uc002tzo.2_3_9 | chr2:158958552 | + | AG | GA | (A7) novel start | alternative | UPP2 | NP_001128570.1 | NM_001135098.1 | uridine phosphorylase 2 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr2 | 158958552 | 158958637 | + | AG | GTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGGTCCATGAGATCTGACAGGAATACATATGTTGG |
| Chimp | panTro2 | chr2b | 162731779 | 162731864 | + | GA | GTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGTTCCATGAGATCTGACAGGAATACATATGTTGG |
| Gorilla | gorGor1 | Supercontig_0070212 | 2645 | 2730 | - | GA | GTGACTTTTCACATANTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGTTCCATGAGATCTGACAGGAATACATATGTTGG |
| Orangutan | ponAbe2 | chr2b | 47781659 | 47781744 | + | GA | GTGACTATTCACATAGTAGAGAGAATGGCTTCGGTTATACCTGTCTCCAATAGTTCCATGAAATCTGACAGGAATACATACATTGG |
| Rhesus | rheMac2 | chr12 | 21689320 | 21689405 | + | GA | GTGACTATTCACATAGTAGAGAGAATGGCTTCGGTTATACCTGCCTCCAATAGTTCCATGAGATCTGATAGGAATACATATGTGGG |
| Baboon | papHam1 | scaffold11107 | 33443 | 33528 | + | GA | GTGACTATTCACATAGTAGAGAGAATGGCTTCGGTTATACCTGCCTCCAATAGTTCCATGAGATCTGATAGGAATACATATGTTGG |
| Marmoset | calJac1 | Contig8926 | 13368 | 13453 | + | GA | GTGACTGTTCACACAGTAGAGAGAATGGCTTCGGTTTTACCTGCCTCCAAAAGATCCATGAGATCTGACGGGAATACATATGTTGG |
| Tarsier | tarSyr1 | scaffold_506693 | 68 | 153 | + | GA | GTACCTATCCACATAGTGGAAAATATAGCTTTGGTTTTATCTGCCACCAATAGATCCATGAGATGTGGTAGGAATACATATATTGG |
| Lemur | micMur1 | scaffold_1196 | 190701 | 190786 | + | CA | GTGACTATCCACACAGGACAAAGGATGGCTTCGGCTTTACCTGCCTCCAATACATCCATGAGATCTGACAGGAATACATATGTTGG |
| Galago | otoGar1 | scaffold_108496.1-16178 | 10052 | 10137 | + | AA | GCGACTGTCCACATAGTGCAAAGTATGGCCTCCGTCCTACCTGCTTCCAATAGCTGCATGAGAGCTGACAGGAAGGCATACGTTGG |
| Cow | bosTau4 | chr2 | 39649904 | 39649989 | - | GA | GTGACTATCTTCATATTACAAAGTATGGCTTCAGTTTTACCTGCTTCCAATACATCCATGAGATCTGACAGGAATACATATGTTGG |
Alignment (splice site sequences are in lowercase)
Human agGTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGGTCCATGAGATCTGACAGGAATACA Chimp ga.....................................................T........................ Gorilla ga...............N.....................................T........................ Orangutan ga......A.........................G..........T.........T.......A................ Rhesus ga......A.........................G....................T..............T......... Baboon ga......A.........................G....................T..............T......... Marmoset ga......G......C..................G...T.............A..A...............G........ Tarsier ga..AC..A.C........G..A.AT..A....TG...T..T.....A.......A..........G..GT......... Lemur ca......A.C....C..G.C.A..G........G.C.T...............CA........................ Galago .a.C....G.C........GC.A..T.....C..C..CC.......T........C.G.......G..........GG.. Cow ga......A.CTT....T..C.A..T............T.......T.......CA........................ Human TATGTTGGgt Chimp .......... Gorilla .......... Orangutan ..CA...... Rhesus .....G.... Baboon .......... Marmoset .......... Tarsier ...A...... Lemur .......... Galago ..C....... Cow ..........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13 | uc002vnu.2_6_8 | chr2:224845117 | - | AG | AA | (A1) shift; increase; inframe | alternative | SERPINE2 | NP_006207.1 | NM_006216.3 | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr2 | 224845028 | 224845117 | - | AG | CAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Chimp | panTro2 | chr2b | 229997294 | 229997383 | - | AA | CAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Gorilla | gorGor1 | Supercontig_0006475 | 6178 | 6267 | - | AA | CAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Orangutan | ponAbe2 | chr2b | 116096812 | 116096901 | - | AA | CAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Rhesus | rheMac2 | chr12 | 87860837 | 87860926 | - | AA | CAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Baboon | papHam1 | scaffold1966 | 103286 | 103375 | - | AA | CAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Marmoset | calJac1 | Contig846 | 201927 | 202016 | - | AA | CAGGGTCAGAAAACCTCCATGTTTCTCAAATTTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Tarsier | tarSyr1 | scaffold_19321 | 30401 | 30490 | - | AA | CAGAGTCAGAAAACCTGCACGTTTCTCACATCTTGCAAAAAGCAAAAATCGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Lemur | micMur1 | scaffold_742 | 214941 | 215030 | - | AA | CAGGGTCAGAGAACCTCCATGTTTCTCACATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCTACAA |
| Galago | otoGar1 | scaffold_109401.1-310823 | 232172 | 232261 | - | AA | CAGGGTCCGAAAACCTTCATGTTTCTCACATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCTACAA |
| Mouse | mm9 | chr1 | 79796043 | 79796132 | - | AA | CAGGGTCAGAGAGCCTTCATGTCTCTCACATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTTCGGCAGCAACAA |
| Cow | bosTau4 | chr2 | 116633129 | 116633218 | - | AA | CAGGGTCAGAAAACCTTCATGTTTCTCACATCTTGCAAAAAGCAAAAATCGAAGTCAGTGAAGATGGAACCAAAGCTTCAGCAGCAACAA |
| Dog | canFam2 | chr37 | 32705071 | 32705160 | - | AA | CAGGGTCAGAAAACCTGCACGTGTCTCACATCTTGCAGAAAGCAAAAATCGAAGTCAGCGAAGACGGAACCAAAGCTTCAGCAGCAACAA |
Alignment (splice site sequences are in lowercase)
Human agCAGGGTCAGAAAACCTCCATGTTTCTCATATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGAACCAAAGCTT Chimp .a.............................................................................. Gorilla .a.............................................................................. Orangutan .a.............................................................................. Rhesus .a.............................................................................. Baboon .a.............................................................................. Marmoset .a............................A..T.............................................. Tarsier .a...A............G..C........C....................C............................ Lemur .a..........G.................C................................................. Galago .a.......C........T...........C................................................. Mouse .a..........G.G...T.....C.....C................................................. Cow .a................T...........C....................C............................ Dog .a................G..C..G.....C........G...........C........C.....C............. Human CAGCAGCAACAAgt Chimp .............. Gorilla .............. Orangutan .............. Rhesus .............. Baboon .............. Marmoset .............. Tarsier .............. Lemur .......T...... Galago .......T...... Mouse .G............ Cow .............. Dog ..............
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14 | uc003epq.2_3_5 | chr3:133302846 | + | AG | AA | (A1) shift; increase; inframe | alternative | CDV3 | NP_001127894.1 | NM_001134422.1 | protein CDV3 homolog | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr3 | 133302846 | 133302994 | + | AG | CAGTGAAAAGGAAGAAGACGATAATGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGAGGTATGGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCCAGTACAAGCACCTCCTGCTCCAGTAATTG |
| Chimp | panTro2 | chr3 | 138155556 | 138155704 | + | AA | CAGTGAAAAGGAAGAAGACGATAATGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGAGGTATGGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCCAGTACAAGCACCTCCTGCTCCAGTAATTG |
| Rhesus | rheMac2 | chr2 | 154153700 | 154153848 | - | AA | CAGTGAAAAGGAAGAAGATGATAATGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGAGGTATGGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCTGGTCCAAGCACCTCCTGCTCCAGTAATCG |
| Baboon | papHam1 | scaffold8414 | 151 | 299 | + | AA | CAGTGAAAAGGAAGAAGATGATACTGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGAGGTATGGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCTGGTCCAAGCACCTCCTGCTCCAGTAATCG |
| Marmoset | calJac1 | Contig13381 | 12786 | 12934 | + | AA | CAGTGAAAAGGAAGAAGATGATAATGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGTGGTATGGAAAAATCTTCAGGTCCCTGGAACAAAACAGCTCCGGTACAAGCACCTCCTGCTCCAGTAATTG |
| Tarsier | tarSyr1 | scaffold_162908 | 3216 | 3364 | + | AA | TAGTGAAAAGGAAGAAGACGATAATGAAAAGAGAGAAGATCCAGGCGACAACTGGGAAGAAGGTGGAGGAGGTGGTGGTGGTGTAGAAAAGTCTTCAGGTCCCTGGAATAAAGCAGCTCCGGCCCAAGCACCTCCTGCTCCTGTAATTG |
| Lemur | micMur1 | scaffold_646 | 39654 | 39802 | + | TA | TAGCGAAAAGGAAGAAGAAGATAATGAAAAGAGAGAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGAGGAGGTGGTGGTATAGAAAAGTCTTCAGGTCCCTGGAATAAAACAGCCCCGGTACAAGCACCTCCTGCTCCAGTAATTG |
| Galago | otoGar1 | scaffold_99972.1-148850 | 106341 | 106489 | + | AA | AAGTGAAAAGGAAGAAGATGATAATGAAAAGAGAGAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGAGGTGGTGGTGGTATAGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCCGGTTCAGGCACCTCCTGCTCCAGTAATTG |
| Mouse | mm9 | chr9 | 103262206 | 103262351 | - | AA | TAGTGAAAAGGAAGATGATGATAATGAGAAGAGAGAAGATCCAGGAGATAATTGGGAAGAAGGTGGAGGTGGCAGTGGAGCAGAAAAATCTTCAGGTCCCTGGAATAAAACCGCTCCGGTACAAGCGCCTCCTGCTCCAGTAACAG |
| Cow | bosTau4 | chr1 | 138025864 | 138026012 | - | GA | TAGTGAAAAGGAAGAAGATGAAGTTGAAAAGAGAGAAGATCCAAGTGATAATTGGGAAGAAGGTGGAGGTGGTGGTGGTGGTGTAGAAAAGTCTTCAGGCCCTTGGAATAAAACTGCTCCGGTACAAGCACCTCCTGCTCCAGTAGTTG |
| Dog | canFam2 | chr23 | 33530133 | 33530281 | + | AA | TAGTGAAAAGGAAGAAGATGATAATGAGAAAAGAGAAGATCCCGGTGATAACTGGGAAGAAGGTGGAGGTGGCGGTGGTGGTGTAGAAAAGTCTTCAGGTCCCTGGAATAAAACAGCTCCAGTACAAGCACCTCCTGCTGCAGTAATTG |
Alignment (splice site sequences are in lowercase)
Human agCAGTGAAAAGGAAGAAGACGATAATGAAAAGAGACAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGG Chimp .a.............................................................................. Rhesus .a..................T........................................................... Baboon .a..................T....C...................................................... Marmoset .a..................T........................................................... Tarsier .aT.................................G..........C..C....................A........ Lemur taT..C..............A...............G..................................A..A..... Galago .aA.................T...............G..................................A........ Mouse .aT..............T..T........G......G..........A.....T....................CA.... Cow gaT.................T..AGT..........G........A.......T.......................... Dog .aT.................T........G..A...G.......C.............................C..... Human AGGTATGGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCCAGTACAAGCACCTCCTGCTCCAGTAATTGgt Chimp ......................................................................... Rhesus .........................................TG..C.......................C... Baboon .........................................TG..C.......................C... Marmoset T.............................C...........G.............................. Tarsier T...G.A.....G.....................G.......G.CC.................T......... Lemur T.....A.....G..........................C..G.............................. Galago T.....A...................................G..T..G........................ Mouse ..---CA.............................C.....G........G................CA... Cow T...G.A.....G........C..T...........T.....G........................G..... Dog T...G.A.....G................................................G...........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15 | uc003gay.2_6_10 | chr4:678391 | - | AG | CG | (A1) shift; increase; inframe | alternative | MFSD7 | Q6UXD7 | AY203936.1 | major facilitator superfamily domain containing 7 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr4 | 678272 | 678391 | - | AG | CAGCTCATGTGGAACAAGGCCTATGTCATCCTGGCTGTGTGCTTGGGGGGAATGATCGGGATCTCTGCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGTGCAAGCGGCCACTCCAGT |
| Chimp | panTro2 | chr4 | 706909 | 707021 | - | CG | AAGCTGGTGTGGAACAAGGCCTATGTCATCCTGGCTGTGTGCTTGGGGGGAATGATCGGGATCTCTGCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGTGCAAGCGGCCACTCCAGT |
| Gorilla | gorGor1 | Supercontig_0019078 | 14270 | 14389 | + | TG | CAGCTCGTGTGGAACAAGGCCTATGTCATCCTGGCTGTGTGTGGGGGGGGAATGATCGGGATCTCTGCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGTGCAAGCGGCCACTCCAGT |
| Orangutan | ponAbe2 | chr4 | 667010 | 667129 | - | CG | CAGCTCGTGAGGAACAAGGCCTATGTCATCCTGGCTGTGTGCTTGGGGGGAGTCATCGGGATCTTCTCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGCGCAAGCAGCTACTCCAGT |
| Baboon | papHam1 | scaffold3334 | 88428 | 88547 | + | CG | AAGCTGGTGCGGAATAAGGCCTATGTCATCCTGGCTGTGTGCTTCGGGGGATGCATCGGGATCTCCTACAGCTTCTCAACCCTCCTGCAGCAGATCCTCTGTGCAAGCGGCTACTCCAGT |
| Marmoset | calJac1 | Contig9194 | 3677 | 3796 | + | TG | CAGCTCCTGAGGAACAAGGCCTATGTCATCCTGGCTGTGTGTTTTGGGGGAGGCATCGGGATCTTCTCCAGCTTCTCAGCCCTCCTGGAGCAGATCCTCTGTGCGAGCGGCTACTCCAGC |
| Mouse | mm9 | chr5 | 108873490 | 108873609 | - | TC | TAGCTCATACAGAATAAGGCCTACGTCCTCCTGGCCGTATGCTTCGGTGGTGGCATTGGTGTCTTCTCTAGCTTCTCAGCCCTCCTGGAACAGATCCTTTGTGCCAGTGGCTATTCTAAT |
| Cow | bosTau4 | chr6 | 117908586 | 117908705 | - | TT | TAGCTCACGAGGAACAAGGCCTACATGGTCCTGGCTGTGTGCTTTGGGGGCGGCATTGGCATCTTCTCCAACTTCTCAGCCCTCCTGGAGCAGGTCCTCTGCGTGAACGGCTACTCCAGC |
| Dog | canFam2 | chr3 | 94562730 | 94562849 | + | CC | CAGCTCCTGCACAACAGGGCCTACGTCACCCTGGCCGTGTGCTTCGGGGGCGGCATCGGCATCTTCTCCGGCTTTTTGGCCCTCCTGGAGCAGGTCCTCTGCGTGAAGGGCTACTCGAAG |
Alignment (splice site sequences are in lowercase)
Human agCAGCTCATGTGGAACAAGGCCTATGTCATCCTGGCTGTGTGCTTGGGGGGAATGATCGGGATCTCTGCCAGCTTCTCA Chimp c.A....GG....................................................................... Gorilla t.......G..................................TGG.................................. Orangutan c.......G..A.........................................G.C..........TCT........... Baboon c.A....GG..C....T.............................C......TGC...........CTA.......... Marmoset t.......C..A...............................T..T......GGC..........TCT........... Mouse tcT.......ACA...T........C...C.......C..A.....C..T..TGGC..T..TG...TCT.T......... Cow ttT......C.A.............CA.GG................T.....CGGC..T..C....TCT...A....... Dog cc......C..CAC....G......C....C......C........C.....CGGC.....C....TCT..G....T.TG Human GCCCTCCTGGAGCAGATCCTCTGTGCAAGCGGCCACTCCAGTgt Chimp ............................................ Gorilla ............................................ Orangutan .......................C......A..T.......... Baboon A........C.......................T.......... Marmoset ..........................G......T.......C.. Mouse ...........A........T.....C..T...T.T..T.A... Cow ...............G.......C.TG.A....T.......C.. Dog ...............G.......C.TG.AG...T....G.AG..
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16 | uc003htb.3_18_23 | chr4:95200074 | + | AG | GG | (A1) shift; increase; inframe | alternative | SMARCAD1 | NP_001121902.1 | NM_001128430.1 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr4 | 95200074 | 95200201 | + | AG | TCACAGAAAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Chimp | panTro2 | chr4 | 97337187 | 97337314 | + | GG | TCACAGAAAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Orangutan | ponAbe2 | chr4 | 98325097 | 98325225 | + | GG | TCACAGAGAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAANAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Rhesus | rheMac2 | chr5 | 87261286 | 87261413 | + | GG | TCACAGAGAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Baboon | papHam1 | scaffold30603 | 17315 | 17442 | - | GG | TCACAGAGAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Marmoset | calJac1 | Contig3767 | 132126 | 132253 | - | GG | TCACAGAGAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Tarsier | tarSyr1 | scaffold_21280 | 1419 | 1546 | + | TA | TCACAGAAAAAAATACAGAAATGTGCAATGTCATGATGCAGTTGAGAAAAATGGCCAATCATCCTTTATTACACCGCCAATATTACACAGCTGAAAAGCTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Lemur | micMur1 | scaffold_3875 | 29473 | 29600 | + | GA | TCACAGAAAAAAACACAGAAATGTGTAATGTCATGATGCAGCTGAGAAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Mouse | mm9 | chr6 | 65049254 | 65049381 | + | GA | TCACAGAAAAAAACACAGAGATGTGCAATGTCATGATGCAATTGAGAAAAATGGCCAATCACCCTTTACTACACCGCCAGTATTACACACCTGAGAAACTGAAGGAGATGTCTCAGCTAATGCTGAAG |
| Cow | bosTau4 | chr6 | 32226072 | 32226199 | - | GA | TCACAGAAAAAAATACAGAAATGTGCAATGTCATGATGCAATTGAGAAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAG |
| Dog | canFam2 | chr32 | 20122694 | 20122821 | + | AA | TCACAGAAAAAAGCACAGAAATGTGCAATGTCATGATGCAGTTGAGAAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAGCTCAAGGAAATGTCTCAGCTTATGCTAAAG |
Alignment (splice site sequences are in lowercase)
Human agTCACAGAAAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCC Chimp g............................................................................... Orangutan g........G...................................................................... Rhesus g........G...................................................................... Baboon g........G...................................................................... Marmoset g........G...................................................................... Tarsier ta.............T................................A..........................C.... Lemur ga.........................T...............C....A............................... Mouse ga...................G....................A.....A..............C......C....C.... Cow ga.............T..........................A.....A............................... Dog .a............G.................................A............................... Human AATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAGgt Chimp .................................................... Orangutan .................................................... Rhesus .................................................... Baboon .................................................... Marmoset .................................................... Tarsier ...................G................................ Lemur .................................................... Mouse .G.........C....G.....G.....G...........A.....G..... Cow .................................................... Dog ...................G................................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17 | uc011chk.1_3_6 | chr4:141484669 | - | AG | AA | (A3) shift; decrease; inframe | alternative | UCP1 | Q4KMT7 | BC096736.1 | uncoupling protein 1 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr4 | 141484472 | 141484669 | - | AG | CACCTAGTTTAGGAAGCAAGATTTTAGCTGGTCTAACGACTGGAGGAGTGGCAGTATTCATTGGGCAACCCACAGAGGTCGTGAAAGTCAGACTTCAAGCACAGAGCCATCTCCACGGAATCAAACCTCGCTACACGGGGACTTATAATGCGTACAGAATAATAGCAACAACCGAAGGCTTGACGGGTCTTTGGAAAG |
| Chimp | panTro2 | chr4 | 144325998 | 144326195 | - | AA | CACCTAGTTTAGGAAGCAAGATTTTAGCTGGTCTAACGACTGGAGGAGTGGCAGTATTCATTGGGCAACCCACAGAGGTCGTGAAAGTCAGACTTCAAGCACAGAGCCATCTCCACGGAATCAAACCTCGCTACACGGGGACTTATAACGCGTACAGAATAATAGCAACAACCGAAGGCTTGACGGGTCTTTGGAAAG |
| Orangutan | ponAbe2 | chr4 | 145993480 | 145993677 | - | AA | CACCTAGTTTAGGAAGCAAGATCTTAGCTGGTCTAACGACTGGAGGAGTGGCAGTATTCATTGGGCAACCCACAGAGGTCGTGAAAGTCAGACTTCAAGCACAGAGCCATCTCCACGGTATCAAACCTCGCTACACGGGGACTTATAACGCGTACAGAATAATAGCAACAACCGAAGGCTTGACGGGTCTTTGGAAAG |
| Rhesus | rheMac2 | chr5 | 133016226 | 133016423 | - | AA | CACCTAGTTTAGGAAGCAAGATCTTAGCTGGTCTAATGACTGGAGGAGTGGCAGTATTCATCGGACAACCCACAGAGGTTGTGAAAGTCAGACTTCAAGCGCAGAGCCATCTCCACGGTATCAAACCTCGCTACACGGGGACTTATAACGCGTACAGAATAGTAGCAACAACGGAAGGCTTGACGGGTCTTTGGAAAG |
| Baboon | papHam1 | scaffold563 | 44577 | 44774 | - | AA | CACCTAGTTTAGGAAGCAAGATCTTAGCTGGTCTAATGACTGGAGGAGTGGCAGTATTCATCGGACAACCCACAGAGGTTGTGAAAGTCAGACTTCAAGCGCAGAGCCATCTCCACGGTATCAAACCTCGCTACACGGGGACTTATAACGCGTACAGAATAGTAGCAACAACGGAAGGCTTGACGGGTCTTTGGAAAG |
| Marmoset | calJac1 | Contig4071 | 8957 | 9154 | + | AA | CACCTAGTTTAGGAAGCAAGATCTTAGCTGGTCTAGCGACTGGAGGAGTGGCAGTATTCATTGGGCAACCCACAGAGGTCGTGAAAGTCAGACTTCAAGCACAGAGCCATCTCCACGGTATCAAACCTCGCTACACGGGGACTTACAACGCCTACAGAATAATAGCAACAACCGAAGGCTTGATGGGTCTTTGGAAAG |
| Tarsier | tarSyr1 | scaffold_17027 | 21900 | 22097 | + | AA | CTGCTACTTTAGGAAACAAGATTTCGGCGGGTCTGACAACGGGAGGAGTGGCAGTATTCATCGGGCAACCCACAGAGGTGGTGAAAGTCAGACTCCAAGCGCAGAGTCACCTGCACGGTCCCAAACCTCGCTACACGGGGACTTACAATGCTTACAGAATCATAGCAACGACAGAAGGCTTGACGGGGCTTTGGAAAG |
| Lemur | micMur1 | scaffold_586 | 6656 | 6850 | - | AA | CAAGCCTGGGAAGCAAGATCTCAGCTGGCTTGACAACTGGAGGAGTGGCAGTGTTCATTGGGCAGCCCACCGAGGTCGTGAAAGTCAGACTGCAAGCCCAGAGCCATCTACATGGCCTCAAACCTCGCTACACTGGGACTTACAATGCTTACAGAATCATAGCAACAACGGAAGGCTTGACGGGTCTTTGGAAAG |
| Galago | otoGar1 | scaffold_84212.1-414233 | 372321 | 372518 | + | AA | CAGGTAGTCTGGGAAGCAAGATCTCAGCTGGCTTAACAACAGGAGGAGTGGCAGTGTTCATTGGGCAGCCCACAGAGGTTGTAAAAGTCAGACTTCAGGCACAGAGCCATCTACATGGCCTCCAACCTCGCTATACCGGGACTTACAATGCTTACAGAATCATAGCAACAACAGAAGGCTTGACAGGTCTTTGGAAAG |
| Mouse | mm9 | chr8 | 85817790 | 85817987 | + | AC | CTGCCTCTCTCGGAAACAAGATCTCAGCCGGCTTAATGACTGGAGGTGTGGCAGTGTTCATTGGGCAGCCTACAGAGGTCGTGAAGGTCAGAATGCAAGCCCAGAGCCATCTGCATGGGATCAAACCCCGCTACACGGGGACCTACAATGCTTACAGAGTTATAGCCACCACAGAAAGCTTGTCAACACTTTGGAAAG |
| Cow | bosTau4 | chr17 | 18325087 | 18325284 | + | AA | CAGCTAGTTTAGGAAGCAAGATCTCAGCGGGCCTAATGACTGGAGGCGTGGCCGTGTTCATTGGGCAACCCACAGAGGTGGTCAAGGTCAGACTGCAAGCTCAGAGCCATCTCCACGGTCCCAAACCTCGATACACTGGGACTTACAATGCTTACAGAATTATAGCAACAACAGAAGGCTTGACGGGGCTTTGGAAAG |
| Dog | canFam2 | chr19 | 5287096 | 5287293 | + | AG | CAGCTAGTTTAGGAAGCAGGATCTCCGCTGGTGTAATGACGGGAGGAGCAGCAGTGTTCATAGGGCAACCCACTGAGGTCGTGAAGGTGAGACTTCAAGCACAGAGCCATCTGCATGGCCGCAAACCTCGGTACACCGGCACTTACAATGCCTACAGAATCATAGCCACCACGGAGGGCCTGACGGGCCTTTGGAAAG |
Alignment (splice site sequences are in lowercase)
Human agCACCTAGTTTAGGAAGCAAGATTTTAGCTGGTCTAACGACTGGAGGAGTGGCAGTATTCATTGGGCAACCCACAGAGG Chimp .a.............................................................................. Orangutan .a......................C....................................................... Rhesus .a......................C.............T........................C..A............. Baboon .a......................C.............T........................C..A............. Marmoset .a......................C............G.......................................... Tarsier .a.TG...C........A........CG..G.....G..A..G....................C................ Lemur .a..---..CC.G...........C.C......CT.G..A.................G...........G.....C.... Galago .a..GG....C.G...........C.C......CT....A..A..............G...........G.......... Mouse .c.TG.CTC.C.C....A......C.C...C..CT...T.........T........G...........G..T....... Cow .a..G...................C.C...G..C....T.........C.....C..G...................... Dog ....G...............G...C.CC......G...T...G.......CA.....G.....A...........T.... Human TCGTGAAAGTCAGACTTCAAGCACAGAGCCATCTCCACGGAATCAAACCTCGCTACACGGGGACTTATAATGCGTACAGA Chimp ......................................................................C......... Orangutan ........................................T.............................C......... Rhesus .T....................G.................T.............................C......... Baboon .T....................G.................T.............................C......... Marmoset ........................................T..........................C..C..C...... Tarsier .G..............C.....G.....T..C..G.....TCC........................C.....T...... Lemur ................G.....C...........A..T..CC................T........C.....T...... Galago .T..A..............G..............A..T..CC..C..........T..C........C.....T...... Mouse .......G......A.G.....C...........G..T..G........C..............C..C.....T...... Cow .G..C..G........G.....T.................TCC.........A.....T........C.....T...... Dog .......G..G.......................G..T..CCG.........G.....C..C.....C.....C...... Human ATAATAGCAACAACCGAAGGCTTGACGGGTCTTTGGAAAGgt Chimp .......................................... Orangutan .......................................... Rhesus ...G..........G........................... Baboon ...G..........G........................... Marmoset .........................T................ Tarsier ..C........G..A..............G............ Lemur ..C...........G........................... Galago ..C...........A...........A............... Mouse G.T.....C..C..A...A.....T.AACA............ Cow ..T...........A..............G............ Dog ..C.....C..C..G..G...C.......C............
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18 | uc003kib.2_7_7 | chr5:82648944 | + | AG | GA | (A1) shift; increase; inframe | alternative | XRCC4 | NP_071801.1 | NM_022406.2 | X-ray repair complementing defective repair in Chinese hamster cells 4 | dbSNP:rs1805377 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr5 | 82648944 | 82649061 | + | AG | TTCTAGGCCTGATTCTTCACTACCTGAGACGTCTAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Chimp | panTro2 | chr5 | 32294709 | 32294826 | - | GA | TTCTAGGCCTGATTCTTCACTACCTGAGACGTCGAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Gorilla | gorGor1 | Supercontig_0008430 | 18836 | 18953 | + | AA | TTCTAGGCCTGATTCTTCACTACCTGAGACGTCGAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Orangutan | ponAbe2 | chr5 | 83570317 | 83570434 | + | AT | CTCTAGGCCTGATTCTTCACTACCTGAGACGTCGAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Rhesus | rheMac2 | chr6 | 79540522 | 79540639 | + | AA | CTCTAGGCCTGATTCTTCACTACCTGAGACATCGAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Baboon | papHam1 | scaffold19342 | 28160 | 28277 | - | AA | CTCTAGGCCTGATTCTTCACTACCTGAGACATCGAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Marmoset | calJac1 | Contig2687 | 88315 | 88432 | + | aa | CTCTAGGCCTGATTCTTCACTACCTGAGACGTTGAAAAAGGAGCACATCTCAGCTGAAAACATGTCCTTAGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Tarsier | tarSyr1 | scaffold_30956 | 15744 | 15861 | - | AA | CTCTAGGCTTGACTCTTCACCACCTGAGACATTGAAAGAGGAGCGCATCTCGGCTGAAGACATGTCTTTAGAAATGCTAAGAAACAGCAACCCAGAAGACCTCTTTGATGAGATTTAA |
| Lemur | micMur1 | scaffold_1322 | 107980 | 108097 | + | AA | CTCTAGACTTGATTCTTCACTACCTGAAACGTTGAAAAAGGGGCACATCTCAGCTGAAAACATGTCTTTGGAAACTCTGAAAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Galago | otoGar1 | scaffold_10305.1-641162 | 189385 | 189502 | - | TG | CTCTAGACTTGATCCTTCTCTACCTGCGACATTGAAAAAGGAGCCCATCTCAGCTGAAAGCGTGTCTTTGGAAACTCTGAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA |
| Mouse | mm9 | chr13 | 89988958 | 89989074 | - | TA | CTGTAGGCTTGCCTCTTCACTACCCCAGACCTTGAAAGAGGAGAGCACCTCTGCTGAAAACATGTCTTTAGAAACCCTGAGAAACAGCAGCCCAGAAGATCTCTTTGATTAGATATA |
| Cow | bosTau4 | chr7 | 84252830 | 84252947 | + | TA | CTCTAGGCTTGATCCTCCACTACCTGAGATGCCGAAAAAGGATCATGGCCCAGCTGAAAACATGTCCTTAGAAACTCTAAGAAATAGTAGTCCAGGAGACCTCTTTGATGAGATTTAA |
| Dog | canFam2 | chr3 | 27213538 | 27213655 | - | TA | CTCTAGGCTTGATCCTCCACTACCTGAGACGTCAAAAAAGGAGCACAGCTCAGCTGAAAACATGTCTTTAGAAACTCTAAGAAACAGTAGTTCAGAAGACCTCTTTGATGAGATTTAA |
Alignment (splice site sequences are in lowercase)
Human agTTCTAGGCCTGATTCTTCACTACCTGAGACGTCTAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCT Chimp ga.................................G............................................ Gorilla .a.................................G............................................ Orangutan .tC................................G............................................ Rhesus .aC.............................A..G............................................ Baboon .aC.............................A..G............................................ Marmoset .aC...............................TG................................C........... Tarsier .aC.......T...C.......C.........A.TG...G......G......G......G...............TG.. Lemur .aC.....A.T..................A....TG.......G...........................G........ Galago t.C.....A.T....C....T.......C...A.TG..........C..............G.G.......G........ Mouse taC.G.....T..CC...........CC....C.TG...G.....AG..C...T.......................C.. Cow taC.......T....C..C............T.C.G........T..TGG.C................C........... Dog taC.......T....C..C................A.............G.............................. Human GAGAAACAGCAGCCCAGAAGACCTCTTTGATGAGATTTAA Chimp ........................................ Gorilla ........................................ Orangutan ........................................ Rhesus ........................................ Baboon ........................................ Marmoset ........................................ Tarsier A..........A............................ Lemur ..A..................................... Galago ........................................ Mouse .....................T.........T....A... Cow A.....T..T..T....G...................... Dog A........T..TT..........................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19 | uc010kiv.2_6_61 | chr6:152629763 | - | AG | GG | (A3) shift; decrease; inframe | alternative | SYNE1 | NP_149062.1 | NM_033071.3 | spectrin repeat containing, nuclear envelope 1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr6 | 152629624 | 152629763 | - | AG | CTGTGGTACAATATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCTCACAGAGAGATTGAGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAG |
| Chimp | panTro2 | chr6 | 155091091 | 155091230 | - | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCTCACAGAGAGATTGAGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAG |
| Gorilla | gorGor1 | Supercontig_0001868 | 36145 | 36284 | + | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCTCACAGAGAGATTGAGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAG |
| Orangutan | ponAbe2 | chr6 | 155578435 | 155578574 | - | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCTCACAGAGAGATTGAGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAG |
| Rhesus | rheMac2 | chr4 | 110773550 | 110773689 | + | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCCCACAGAGAGATTGAGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAG |
| Baboon | papHam1 | scaffold943 | 207471 | 207610 | - | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCCCACAGAGAGATTGAGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAG |
| Marmoset | calJac1 | Contig1075 | 252005 | 252144 | - | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAGCATCTCCAGCAACTGATAGAAGGAGCTCACAGAGAGATTGAGGATAAACCTGTCGCCACCAGTAACATACAGGAGCTGCAAGCTCAGATTTCTCGGCATGAG |
| Tarsier | tarSyr1 | scaffold_154 | 93285 | 93424 | - | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAGCATCTTCAGCAGCTGATAGAAGGGGCTCACAGAGAGATTGAGGATAAGCCCGTGGCCACCAGTAATATCCAGGAGCTGCAAGCGCAGATCTCTCGACATGAG |
| Lemur | micMur1 | scaffold_307 | 471491 | 471630 | - | GG | CAGTGGTGCAGTATGAACAATATGAACAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCTCACAGGGAAATTGAGGATAAACCCGTGGCCACCAGTAACATCCAGGAGCTGCAAGCCCAGATTTCTCGGCATGAG |
| Galago | otoGar1 | scaffold_85226.1-288156 | 46792 | 46931 | - | GG | CTGTGGTGCAGTATGAACAATATGAGCAAGAAATGAAGCATCTCCAGCAACTGATAGAAGGAGCCCACAGGGAAATTGAGGATAAACCCGTGGCCACCAGTAACATCCAGGAGCTGCAAGCACAGATTTCTCGGCACGAG |
| Mouse | mm9 | chr10 | 5144406 | 5144545 | + | GG | CTGTGGTGCAGTATGAACAGTACAAGCAGGAAATGAAGCATCTCCAGCAGCTGATAGAAGAGGCACACAGAGAGATCGAGGACAAACCCGTGGCCACCAGTAACATCCAGGAGCTACAGGCACAGATCTCTCTGCACGAG |
| Cow | bosTau4 | chr9 | 92876001 | 92876140 | - | GG | CTGTGGTGCAATATGAACAATATGAGCAAGAAATGCAGCACCTCCAGGAACTCATAGAAGGAGCTCACAGAGAGATTGAGGATAAGCCTGTGGCCACCAGCAACATCCAGGAACTGCAAGCCCAGATTTCTCGGCATGAG |
| Dog | canFam2 | chr1 | 45595291 | 45595430 | - | GG | CTGTGGTGCAATATGAACAGTATGAGCAAGAAATGCAGCACCTCCGGGAGCTTATAGAAGGAGCGCACAGAGAAATCGAGGATACACCTGTGGCCACCAGTAACATCCAGGAGCTGCAAGCCCAGATTTCTCGGCATGAG |
Alignment (splice site sequences are in lowercase)
Human agCTGTGGTACAATATGAACAATATGAGCAAGAAATGAAACATCTCCAGCAACTGATAGAAGGAGCTCACAGAGAGATTG Chimp g........G..G................................................................... Gorilla g........G..G................................................................... Orangutan g........G..G................................................................... Rhesus g........G..G.....................................................C............. Baboon g........G..G.....................................................C............. Marmoset g........G..G..........................G........................................ Tarsier g........G..G..........................G.....T.....G...........G................ Lemur g..A.....G..G..............A............................................G..A.... Galago g........G..G..........................G..........................C.....G..A.... Mouse g........G..G........G..CA....G........G...........G..........AG..A...........C. Cow g........G...........................C.G..C......G....C......................... Dog g........G...........G...............C.G..C....G.G.G..T...........G........A..C. Human AGGATAAACCTGTTGCCACCAGTAACATACAGGAGCTGCAGGCTCAGATTTCTCGGCATGAGgt Chimp ................................................................ Gorilla ................................................................ Orangutan ................................................................ Rhesus ................................................................ Baboon ................................................................ Marmoset .............C..........................A....................... Tarsier .......G..C..G...........T..C...........A..G.....C.....A........ Lemur ..........C..G..............C...........A..C.................... Galago ..........C..G..............C...........A..A..............C..... Mouse ....C.....C..G..............C........A.....A.....C....T...C..... Cow .......G.....G........C.....C.....A.....A..C.................... Dog ......C......G..............C...........A..C....................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20 | uc003svh.2_2_4 | chr7:22533398 | - | AG | AC | (A3) shift; decrease; inframe | alternative | STEAP1B | NP_997225.1 | NM_207342.2 | STEAP family member 1B |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr7 | 22532943 | 22533398 | - | AG | CAAACAGCCCATGCTGATGAATTTGACTGCCCTTCAGAACTTCAGCACGCACAGGAACTCTTTCCACAGTGGCACTTGCCAATTAAAATAGCTGCTGTTATGGCATCTCTGACTTTTCTTTACACTCTTCTGAGGGAAGTAATTCACCCTTTAGCAACTTCCCATCAACAATATTTTTATAAAATTCCAATCCTGGTCATCAACAAAGTCTTGCCAATGGTTTCCATCACTCTCTTGGCATTGGTTTACCTACCAGGTGTGATAGCAGCAATTGTCCAAGTTCATAATGGAACCAAGTATAAGAAGTTTCCACATTGGTTGGATAAGTGGATGTTAACAAGAAAGCAGTTTGGGCTTCTCAGTTTGTTTTTTGCTGTACTGCATGCAATTTATACTCTGTCTTACGCAATGAGGCGATCCTACAGATACAAGTTGCTAAACTGGGCATATCAACAG |
| Chimp | panTro2 | chr7 | 22796436 | 22796891 | - | AC | CAAACAGCCCATGCTGATGAATTTGACTGCCCTTCAGAACTTCAGCACACACAGGAACTCTTTCCACAGTGGCACTTGCCAATTAAAATAGCTGCTATTTTAGCATCTCTGACTTTTCTTTACACTCTTCTGAGGGGAGTAATTCACCCTTTAGCAACTTCCCATCAACAATATTTTTATAAAATTCCAATCCTGGTCATCAACAAAGTCTTGCCAATGGTTTCCATCACTCTCTTGGCATTGGTTTACCTGCCAGGTGTGATAGCAGCAATTGTCCAACTTCATAATGGAACCAAGTATAAGAAGTTTCCACATTGGTTGGATAAATGGATGTTAACAAGAAAGCAGTTTGGGCTTCTCAGTTTCTTTTTTGCTGTACTGCATGCAATTTATAGTCTGTCTTACCCAATGAGGCGATCCTACAGATACAAGTTGCTAAACTGGGCATATCAACAG |
| Orangutan | ponAbe2 | chr7 | 86044111 | 86044566 | - | AC | CAGACAGCCCATGCTGATGAATTTGACTGTCCTTCAGAACTTCAGCAAACACGGGAACTCTTTCCACAGTGGCACTTGCCAATTAAAATAGCTGCTATTATAGCATCTCTGACTTTTCTTTACACTCTTCTGAGGGAAGTAATTCACCCTTTAGCAACTTCCCATCAACAATATTTTTATAAAATTCCAATCCTGGTCATCAACAAAGTCTTGCCAATGGTTTCCATCACTCTCTTGGCATTGGTTTACCTGCCAGGTGTGATAGCAGCAATTGTCCAGCTTCATAATGGAACCAAGTATAAGAAGTTTCCACATTGGTTAGATAAGTGGATGTTAACAAGAAAGCAGTTTGGGCTTCTCAGTTTCTTTTTTGCTGTACTGCATGCAATTTATAGTCTGTCTTACCCAATGAGGCGATCCTACAGATACAAGTTGCTAAACTGGGCATATCAACAG |
| Dog | canFam2 | chr14 | 19029283 | 19029738 | + | AT | CAAACAACCCACTTTGATGAATTTGATTGTCCTGCCGAGCTTAAGCACAAACAAGAACTCTTTCCAATGTGGCGCTGGCCAGTTAAAATTGCTGCTGTCATCTCATCTCTGACTTTTCTTTACACTCTTCTGAGGGAAATAATTCACCCTTTTGTAACTTCCCACCAACAGTATTTTTACAAAATTCCAATCCTGGTCATCAACAAAGTCTTGCCAATGGTTTCCATCACCCTCTTGGCACTAGTTTATTTGCCAGGCGTGATAGCAGCTGTTGTACAGCTTCATAATGGAACCAAATATAAGAAATTTCCACATTGGTTGGATAGATGGATGTTAACAAGAAAACAATTTGGGCTTCTCAGTTTCTTTTTTGCTGTCCTGCATGCAATTTACAGTTTATCCTATCCAATGAGGCGATCCTACAGATACAAGTTGCTAAACTGGGCATATCAACAG |
Alignment (splice site sequences are in lowercase)
Human agCAAACAGCCCATGCTGATGAATTTGACTGCCCTTCAGAACTTCAGCACGCACAGGAACTCTTTCCACAGTGGCACTTG Chimp .c................................................A............................. Orangutan .c..G..........................T.................AA...G......................... Dog .t......A....CTT............T..T...G.C..G...A.....AA...A............AT.....G..G. Human CCAATTAAAATAGCTGCTGTTATGGCATCTCTGACTTTTCTTTACACTCTTCTGAGGGAAGTAATTCACCCTTTAGCAAC Chimp ..................A..T.A..................................G..................... Orangutan ..................A....A........................................................ Dog ...G.......T........C..CT...................................A.............T.T... Human TTCCCATCAACAATATTTTTATAAAATTCCAATCCTGGTCATCAACAAAGTCTTGCCAATGGTTTCCATCACTCTCTTGG Chimp ................................................................................ Orangutan ................................................................................ Dog ......C.....G........C..................................................C....... Human CATTGGTTTACCTACCAGGTGTGATAGCAGCAATTGTCCAAGTTCATAATGGAACCAAGTATAAGAAGTTTCCACATTGG Chimp .............G...........................C...................................... Orangutan .............G..........................GC...................................... Dog ..C.A.....TT.G.....C...........TG....A..GC................A........A............ Human TTGGATAAGTGGATGTTAACAAGAAAGCAGTTTGGGCTTCTCAGTTTGTTTTTTGCTGTACTGCATGCAATTTATACTCT Chimp ........A......................................C............................G... Orangutan ..A............................................C............................G... Dog .......GA.................A..A.................C...........C..............C.G.T. Human GTCTTACGCAATGAGGCGATCCTACAGATACAAGTTGCTAAACTGGGCATATCAACAGgt Chimp .......C.................................................... Orangutan .......C.................................................... Dog A..C..TC....................................................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21 | uc003wia.1_3_4 | chr7:150557532 | + | AG | GG | (A1) shift; increase; inframe | alternative | ABP1 | P19801-2 | U11863.1 | amiloride-sensitive amine oxidase [copper-containing] |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr7 | 150557532 | 150557721 | + | AG | GACTGAGGGGGGCCAGCCCAGGGCCCTGAGCCAAGCTGCTTCGCCTGTGCCTGGCAGGTACCCCCTGGCAGTGACCAAGTACCGGGAGTCGGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGCACCCGCCCGTGGTCTTTGAGCAGTTTCTTCACAACAACGAGAACATTGAAAATGAG |
| Chimp | panTro2 | chr7 | 151382781 | 151382970 | + | GG | GACTGAGGGGGGCCAGCCCAGGGCCCTGAGCCAAGCTGCTTCACCTCTGCCTGGCAGGTACCCCCTGGCAGTGACCAAGTACCGGGAGTCGGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGGACCCGCCCGTGGTCTTCGAGAAGTTTCTTCACAACAACGAGAACATTGAAAATGAG |
| Gorilla | gorGor1 | Supercontig_0006103 | 1775 | 1964 | - | GG | GACTGAGGGGGGCCAGCCCAGGGCCCTGAGCCAAGCTGCTTCGCCTCTGCCTGGCAGGTACCCCCTGGCAGTGACCAAGTACCGGGAGTCGGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGGACCCGCCCGTGGTCTTCGAGAAGTTTCTTCACAACAACGAGAACATTGAAAATGAG |
| Orangutan | ponAbe2 | chr7 | 148538131 | 148538320 | + | GG | GGCTGAGGGGGGCCAGCCCAGGGCCCTGAGCCAAGCTGCTTCACCTCTGCCTCGCAGGTACCCCCTGGCAGTGACCAAGTACCGGGAATCGGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGGACCCGCCCGTGGTCTTTGAGAAGTTTCTTCACAACAATGAGAACATTGAAAATGAG |
| Rhesus | rheMac2 | chr3 | 187813289 | 187813478 | + | GG | GGCTAAGGGGGGCCAGCCCAGGCCCCTGAGCCAAGCTGCTTTGCCTCTGCCTGGCAGGTACCCCCTGGCAGTGACCAAGTACCGGGAGTCAGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGGACCCGCCCGTGGTCTTTGAGAAGTTTCTTCACAACAATGAGAACATTGAAAATGAG |
| Baboon | papHam1 | scaffold1705 | 160884 | 161073 | - | GG | GGCTAAGGGGGTCCAGCCCAGGCCCCTGAGCCAAGCTGCTTCGCCTCTGCCTGGCAGGTACCCCCTGGCAGTGACCAAGTACCGGGAGTCAGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGGACCCGCCCGTGGTCTTTGAGAAGTTTCTTCACAACAATGAGAACATTGAAAATGAG |
| Marmoset | calJac1 | Contig11321 | 36821 | 37008 | + | GG | GGCTGGGGACCCAGCCCAGGGCCCTGAGCCTGGCTGCTTCGCCTCTGCGTGGCAGGTACCCCCTGGCAGTGACCAGGTACCGGGAGTCTGAGCTGTGCAGCAGCAGCATCTACAACCAGAACGACCCGTGGGACCCACCCGTGGTCTTTGAGGAGTTTCTTCACAACAATGAGAACATTGAAAACCAG |
Alignment (splice site sequences are in lowercase)
Human agGACTGAGGGGGGCCAGCCCAGGGCCCTGAGCCAAGCTGCTTCGCCTGTGCCTGGCAGGTACCCCCTGGCAGTGACCAA Chimp g...........................................A...C............................... Gorilla g...............................................C............................... Orangutan g..G........................................A...C.....C......................... Rhesus g..G..A.................C..................T....C............................... Baboon g..G..A......T..........C.......................C............................... Marmoset g..G..--....AC....................TG............C...G..........................G Human GTACCGGGAGTCGGAGCTGTGCAGCAGCAGCATCTACCACCAGAACGACCCCTGGCACCCGCCCGTGGTCTTTGAGCAGT Chimp .......................................................G................C...A... Gorilla .......................................................G................C...A... Orangutan .........A.............................................G....................A... Rhesus ............A..........................................G....................A... Baboon ............A..........................................G....................A... Marmoset ............T........................A.............G...G....A...............G... Human TTCTTCACAACAACGAGAACATTGAAAATGAGgt Chimp .................................. Gorilla .................................. Orangutan .............T.................... Rhesus .............T.................... Baboon .............T.................... Marmoset .............T..............CC....
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22 | uc004amn.2_3_4 | chr9:84605332 | + | AG | TG | (A5) exonization; inframe | alternative | FAM75D1 | NP_001001670.1 | NM_001001670.2 | family with sequence similarity 75, member D1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr9 | 84605332 | 84605401 | + | AG | GTTTCCCAGACTGGAAAAGTTTCCAGAGAGAAGAGGAAGAGGAAAGGAAGCTGCTTTCTCTTCTGAAAAG |
| Chimp | panTro2 | chr9 | 80947928 | 80947997 | + | TG | GTCTCCCAGACTGGAAAAGTTTCCAGAGAGAAGAGGAAGAGGAAAGGAAGCTGCTTTCTCTTCTGAAAAG |
| Gorilla | gorGor1 | Supercontig_0006951 | 17458 | 17527 | - | TG | GTTTCCCAGACTGGAAAAGTTTCCAGAGAGAAGAGGAAGAGGAAAGGAAGCTGCTTTCTCTTCTGAAAAG |
| Rhesus | rheMac2 | chr15 | 90746862 | 90746931 | + | TG | GTTTCCCAGACCGGAAATGTTTCCAGAGAGAAGTGGAAGAGGAAAGGAAGCTGCTTTTTATTCTGAAAAG |
| Marmoset | calJac1 | Contig8907 | 51928 | 51997 | - | TG | GTTTCCCAGACCAGATAACCTTCCAGAAAGCAGCAGAAGAGGAAAGGAAGCTGGTTTCTTTTCTGAAAAG |
| Tarsier | tarSyr1 | scaffold_67653 | 4938 | 5007 | - | TG | GCTCCGCAGGTAGGACATCTGGCCAGAGTGAAGTGAAGGAGGCGAGGAGGCTGGTTTCTCTTCTGCAGAG |
| Galago | otoGar1 | scaffold_84730.1-372351 | 245735 | 245804 | + | TG | GTTTCCTAGGTTGGAGAATTTGCCAGAGAGAAGCAGAAGTGGGAAAGAAGCTGCTTTCTGTTCTGGAAAA |
| Cow | bosTau4 | chr8 | 60397618 | 60397687 | + | TG | GTTTCGCAGGTTGGAGATTTCACCAGATAGAAACAGAGGAAAAAACGAAGCTGATTTCTATTCTGAAAAG |
| Dog | canFam2 | chr1 | 80396219 | 80396285 | - | TG | GTTTCCCAGACTACAGATGCTACCAGGGAGAAGTGGAGAAGACACGGAAGCTTCTCTCTGTTTTAAG |
Alignment (splice site sequences are in lowercase)
Human agGTTTCCCAGACTGGAAAAGTTTCCAGAGAGAAGAGGAAGAGGAAAGGAAGCTGCTTTCTCTTCTGAAAAGgt Chimp t...C..................................................................... Gorilla t......................................................................... Rhesus t............C.....T...............T.......................T.A............ Marmoset t............CA..T..CC.......A..C..CA..................G.....T............ Tarsier t..C.C.G...GTA...C.TC.GG......T....T.A.G....CG....G....G...........C.G.... Galago t.......T..GT....G..T..G...........CA....T..G..A.............G.....G...A.. Cow t......G...GT....G.TT.CA.....T....ACA..G..AA...C.......A.....A............ Dog t.............AC.G.T.C.A....G......T...GA..AC.C.......T..C...G..T.---.....
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23 | uc001nyl.2_9_14 | chr11:63987351 | + | AG | CG | (A1) shift; increase; inframe | alternative | FERMT3 | NP_848537.1 | NM_178443.2 | fermitin family homolog 3 long form |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr11 | 63987351 | 63987487 | + | AG | CATCCCACGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAACACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAGCCAGGACGAGGCCCCTGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
| Chimp | panTro2 | chr11 | 62616928 | 62617064 | + | CG | CATCCCACGAAGGCCCCGGAACTTTACCCTGAAGGGCTACCGCCAACACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAGCCAGGACGAGGCCCCCGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
| Gorilla | gorGor1 | Supercontig_0003388 | 60994 | 61130 | + | CG | CATCCCACGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAACACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAGCCAGGACGAGGCCCCTGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
| Orangutan | ponAbe2 | chr11 | 11747146 | 11747282 | - | CG | CATCCCACGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAGCACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAGTCAGGACGAGGCTCCTGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
| Rhesus | rheMac2 | chr14 | 10208875 | 10209011 | - | CA | CACCCCATGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAGCACTGGGTGGTGTTCAAGGAGACTACACTGTCCTACTACAAGAGCCAGGATGAGGCCCCTGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
| Baboon | papHam1 | scaffold14283 | 41982 | 42118 | + | CA | CACCCCATGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAGCACTGGGTGGTGTTCAAGGAGACTACACTGTCCTACTACAAGAGCCAGGATGAGGCCCCTGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
| Marmoset | calJac1 | Contig16940 | 7554 | 7690 | + | CG | AATTCCACAAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAGCACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAACCAGGACGAGGCCCCGGGTGACCCCATCCAGCAGCTCAACCTCAAAG |
| Dog | canFam2 | chr18 | 55862358 | 55862494 | - | TG | CCTCGCCTTCAGGCCCCGGAAGCTGACCCTAAAGGGGTATCGCCAACACTGGGTGGTGTTCAAGGAGACCACCCTGTCCTACTACAAGAGCCAGGATGAGGCCCCAGGGGACCCCATTCAGCAGCTCAACCTCAAGG |
Alignment (splice site sequences are in lowercase)
Human agCATCCCACGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACCGCCAACACTGGGTGGTGTTCAAGGAGACCACACTGTC Chimp c......................CT.T..................................................... Gorilla c............................................................................... Orangutan c..............................................G................................ Rhesus ca..C....T.....................................G.......................T........ Baboon ca..C....T.....................................G.......................T........ Marmoset c.A..T....A....................................G................................ Dog t..C..G.CTTC....................A.....G..T................................C..... Human CTACTACAAGAGCCAGGACGAGGCCCCTGGGGACCCCATTCAGCAGCTCAACCTCAAGGgt Chimp ...........................C................................. Gorilla ............................................................. Orangutan ............T...........T.................................... Rhesus ..................T.......................................... Baboon ..................T.......................................... Marmoset ...........A...............G..T........C.................A... Dog ..................T........A.................................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24 | uc001nzq.1_4_6 | chr11:64082213 | + | AG | CG | (A1) shift; increase; inframe | alternative | ESRRA | NP_004442.3 | NM_004451.3 | steroid hormone receptor ERR1 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr11 | 64082213 | 64082383 | + | AG | CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Chimp | panTro2 | chr11 | 62717602 | 62717772 | + | CG | CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Gorilla | gorGor1 | Supercontig_0041211 | 3291 | 3461 | + | CG | CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCCGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATCGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Orangutan | ponAbe2 | chr11 | 11654406 | 11654576 | - | CG | CAGCCCCAGTAAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCTGCAGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATCGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Rhesus | rheMac2 | chr14 | 10113125 | 10113295 | - | CG | CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCCGACCCCGCGGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Baboon | papHam1 | scaffold6473 | 73801 | 73971 | + | CG | CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCCGACCCCGCGGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Marmoset | calJac1 | Contig3724 | 85494 | 85664 | + | CA | CAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTCGTGGAGCCTGAGAAACTCTATGCCATGCCTGACCCTGCGGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Lemur | micMur1 | scaffold_498 | 432633 | 432803 | + | TG | CAGCCCCGGTGAATGCACTGGTGTCTCACCTGCTAGTGGTTGAACCTGAAAAGCTATATGCCATGCCCGACCCAGCGGGCCCTGATGGACACCTCCCAGCTGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATCGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Mouse | mm9 | chr19 | 6987206 | 6987376 | - | TG | TAGCCCCAGTGAACGCTCTGGTGTCGCATCTGCTGGTGGTTGAACCTGAGAAGCTGTACGCCATGCCTGACCCAGCAAGCCCCGATGGACACCTCCCCGCTGTGGCCACTCTCTGTGACCTTTTTGATCGAGAGATAGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Cow | bosTau4 | chr29 | 44394105 | 44394275 | + | TA | CAGCCCCGGTGAACGCACTCGTGTCCCACCTGCTGGTGGTTGAACCTGAGAAGCTGTATGCCATGCCCGACCCAGCGGGCCCTGATGGACACCTCCCAGCTGTGGCCACCCTCTGTGACCTCTTTGACCGAGAGATCGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAG |
| Dog | canFam2 | chr18 | 55783389 | 55783559 | - | TG | CAGCTCCTGTAAATGCACTGGTGTCTCACCTGCTGGTGGTAGAGCCCGAGAAGCTCTATGCCATGCCTGACCCAGCGGGCCCTGACGGACACCTCCCAGCTGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGTATCCCAG |
Alignment (splice site sequences are in lowercase)
Human agCAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTGGTTGAGCCTGAGAAGCTCTATGCCATGCCTGACCCCGCAG Chimp c............................................................................... Gorilla c............................................................................... Orangutan c...........A..............................................................T.... Rhesus c....................................................................C........G. Baboon c....................................................................C........G. Marmoset ca.....................................C..G...........A....................T..G. Lemur t........G....................C.....A........A.....A.....A...........C.....A..G. Mouse t.T............C..T........G.................A...........G..C..............A...A Cow ta.......G.....C.....C.....C..C..............A...........G...........C.....A..G. Dog t.....T..T..A.................C...........A.....C..........................A..G. Human GCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACCGAGAGATTGTGGTCACCATCAGCTGGGCC Chimp ................................................................................ Gorilla ..........................................................C..................... Orangutan ..........................................................C..................... Rhesus ................................................................................ Baboon ................................................................................ Marmoset ................................................................................ Lemur ..........A...........T...................................C..................... Mouse ....C.....A........C..T.....C..T...........T.....T........A..................... Cow ..........A...........T.....C.............................C..................... Dog .......C..A...........T......................................................... Human AAGAGCATCCCAGgt Chimp ............... Gorilla ............... Orangutan ............... Rhesus ............... Baboon ............... Marmoset ............... Lemur ............... Mouse ............... Cow ............... Dog .....T.........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25 | uc001pqi.1_14_27 | chr11:117059445 | + | AG | GG | (A3) shift; decrease; inframe | alternative | SIDT2 | Q24JR2 | BC114522.1 | SID1 transmembrane family, member 2 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr11 | 117059445 | 117059542 | + | AG | GTACTCGGCCCCGAGTGGACTCCATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACCGACATCGATTCCGACAAGAATGTCATTCGCACCAAG |
| Chimp | panTro2 | chr11 | 116016929 | 116017026 | + | GG | GTACTCGGCCCCGAGTGGACTCCATGAGCTCTGTGGAGGAGGATGACTATGACACATTGACCGACATCGATTCCGACAAGAATGTCATTCGCACCAAG |
| Gorilla | gorGor1 | Supercontig_0017920 | 1911 | 2008 | - | GG | GTACTCGGCCCCGAGTGGACTCCATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACCGACATAGATTCCGACAAGAATGTCATTCGCACCAAG |
| Orangutan | ponAbe2 | chr11 | 114097197 | 114097294 | + | GG | GTACTCGGCCCCGAGTGGACTCTATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACCGACATCGATTCCGACAAGAATGTCATTCGTACCAAG |
| Rhesus | rheMac2 | chr14 | 115587443 | 115587540 | + | TG | GTACTCGGCCCCGAGTGGACTCCATGAGCTCTGTGGAGGAGGATGACTATGACACATTGACCGACATCGATTCCGACAAGAATGTCATTCGCACCAAG |
| Baboon | papHam1 | scaffold7583 | 70866 | 70963 | - | GG | GTACTCGGCCCCGAGTGGACTCCATGAGCTCTGTGGAGGAGGATGACTATGACACATTGACTGACATCGATTCCGATAAGAATGTCATTCGCACCAAG |
| Marmoset | calJac1 | Contig480 | 3024 | 3121 | + | GG | GTACTCGGCCACGGGTGGACTCCATGAGCTCTGTGGAGGAGGACGACTACGACACACTGACCGACATCGACTCAGACAAGAACGTCATTCGCACTAAG |
| Lemur | micMur1 | scaffold_722 | 18184 | 18281 | - | GG | GCACTCGGCCGCGGCTGGACTCCATGAGCTCCGTGGAGGAGGATGACTACGACACATTGACTGACATCGATTCAGACAAGAATGTTATCCGCACCAAG |
| Galago | otoGar1 | scaffold_111272.1-145955 | 98564 | 98661 | - | GG | GTACCCGGCCACGACTGGACTCCATGAGCTCTGTGGAGGAGGATGACTATGATACATTGACTGACATCGATTCAGACAAGAATGTTATTCGCACCAAG |
| Mouse | mm9 | chr9 | 45753749 | 45753846 | - | GG | GTCCTCGGCCTCGACTGGACTCCATGAGCTCCGTGGAAGAGGATGACTACGACACACTGACTGACATCGACTCAGACAAAAACGTCATTCGAACCAAG |
| Cow | bosTau4 | chr15 | 26311608 | 26311705 | + | GG | GCACTCGACCGCGACTGGACTCCATGAGCTCTGTGGAGGAAGATGACTATGACACTCTGGCCGATGTCGATTCAGACAAGAACGTCATTCGCACCAAG |
| Dog | canFam2 | chr5 | 19410029 | 19410126 | - | GG | GCACTCGGCCACGCCTGGACTCCATGAGCTCTGTGGAGGAGGACGACTATGACACGTTGACTGACATTGATTCGGACAAGAATGTCATTCGCACCAAG |
Alignment (splice site sequences are in lowercase)
Human agGTACTCGGCCCCGAGTGGACTCCATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACCGACATCGATTCCGACA Chimp g..................................................T............................ Gorilla g....................................................................A.......... Orangutan g.......................T....................................................... Rhesus t..................................................T............................ Baboon g..................................................T...........T..............T. Marmoset g...........A..G.............................C............C.............C..A.... Lemur g..C........G..GC................C.............................T...........A.... Galago g.....C.....A...C..................................T..T........T...........A.... Mouse g...C.......T...C................C.....A..................C....T........C..A.... Cow g..C.....A..G...C.........................A........T.....TC..G....TG.......A.... Dog g..C........A..CC............................C.....T.....G.....T.....T.....G.... Human AGAATGTCATTCGCACCAAGgt Chimp ...................... Gorilla ...................... Orangutan .............T........ Rhesus ...................... Baboon ...................... Marmoset ....C...........T..... Lemur .......T..C........... Galago .......T.............. Mouse .A..C........A........ Cow ....C................. Dog ......................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26 | uc009zhm.1_7_7 | chr12:10594899 | - | AG | AC | (A6) exonization; frameshift | alternative | KLRC1 | A8MYW4 | AK310992.1 | killer cell lectin-like receptor subfamily C, member 1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr12 | 10594898 | 10594899 | - | AG | AA |
| Chimp | panTro2 | chr12 | 10751714 | 10751715 | - | AC | AA |
| Gorilla | gorGor1 | Supercontig_0083358 | 5879 | 5880 | - | AC | AA |
| Orangutan | ponAbe2 | chr12 | 10732571 | 10732572 | - | AC | AA |
Alignment (splice site sequences are in lowercase)
Human agAA Chimp .c.. Gorilla .c.. Orangutan .c..
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27 | uc001rqw.2_16_17 | chr12:48440231 | - | AG | AA | (A3) shift; decrease; inframe | alternative | SENP1 | NP_055369.1 | NM_014554.2 | sentrin-specific protease 1 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr12 | 48440139 | 48440231 | - | AG | ATTCCTCAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAG |
| Chimp | panTro2 | chr12 | 41687969 | 41688061 | + | AA | ATTCCTCAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAG |
| Gorilla | gorGor1 | Supercontig_0000115 | 174086 | 174178 | - | AA | ATTCCTCAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAG |
| Orangutan | ponAbe2 | chr12 | 47694595 | 47694687 | - | AA | ATTCCTCAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAG |
| Rhesus | rheMac2 | chr11 | 45125345 | 45125437 | - | AA | ATTCCACAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTATATTACCAAAGACAGACCAATCAACTTTACACAG |
| Baboon | papHam1 | scaffold7340 | 34708 | 34800 | - | AA | ATTCCACAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTTACACAG |
| Marmoset | calJac1 | Contig2801 | 259394 | 259486 | - | AA | ATTCCACAGCAGATGAATGGAAGTGACTGTGGAATGTTTGCCTGCAAATACGCTGACTGTATTACCAAAGACAGGCCGATCAGCTTCACACAG |
| Tarsier | tarSyr1 | scaffold_28896 | 135 | 227 | + | AA | ATTCCACAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAG |
| Lemur | micMur1 | scaffold_10802 | 25656 | 25748 | - | AA | ATTCCACAACAGATGAATGGCAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATAACCAAAGACAGACCAATCAACTTCACACAG |
| Mouse | mm9 | chr15 | 97875734 | 97875826 | - | AA | ATCCCACAGCAGATGAATGGGAGTGACTGTGGAATGTTTGCTTGCAAATATGCTGACTGCATTACCAAAGACAGACCAATCAACTTCACACAG |
| Cow | bosTau4 | chr5 | 35424000 | 35424092 | + | AA | ATTCCACAGCAGATGAATGGAAGCGACTGTGGCATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAG |
| Dog | canFam2 | chr27 | 9724711 | 9724803 | + | AA | ATTCCACAGCAGATGAATGGAAGTGACTGTGGCATGTTTGCTTGCAAATATGCTGACTGCATTACCAAAGACAGACCGATCAACTTCACACAG |
Alignment (splice site sequences are in lowercase)
Human agATTCCTCAGCAGATGAATGGAAGTGACTGTGGGATGTTTGCCTGCAAATATGCTGACTGTATTACCAAAGACAGACCA Chimp .a.............................................................................. Gorilla .a.............................................................................. Orangutan .a.............................................................................. Rhesus .a.....A....................................................A................... Baboon .a.....A........................................................................ Marmoset .a.....A..........................A.................C.......................G..G Tarsier .a.....A........................................................................ Lemur .a.....A..A...........C.........................................A............... Mouse .a..C..A..............G...........A........T.................C.................. Cow .a.....A.................C........C............................................. Dog .a.....A..........................C........T.................C.................G Human ATCAACTTCACACAGgt Chimp ................. Gorilla ................. Orangutan ................. Rhesus ........T........ Baboon ........T........ Marmoset ....G............ Tarsier ................. Lemur ................. Mouse ................. Cow ................. Dog .................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28 | uc010sxw.1_9_15 | chr12:110465513 | + | AG | GG | (A1) shift; increase; inframe | alternative | ANKRD13A | NP_149112.1 | AF155103.1 | ankyrin repeat domain-containing protein 13A | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr12 | 110465513 | 110465571 | + | AG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAATTTGGTGCACAAGGG |
| Chimp | panTro2 | chr12 | 111302479 | 111302537 | + | GG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAATTTGGTGCACAAGGG |
| Gorilla | gorGor1 | Supercontig_0005322 | 16346 | 16404 | - | GG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAATTTGGTGCACAAGGG |
| Orangutan | ponAbe2 | chr12 | 111812297 | 111812355 | + | GG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAGTTTGGCGCACAAGGG |
| Rhesus | rheMac2 | chr11 | 110945600 | 110945658 | + | GG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAGTTTGGTGCACAAGGG |
| Baboon | papHam1 | scaffold7358 | 55023 | 55081 | + | GG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAGTTTGGTGCACAAGGG |
| Marmoset | calJac1 | Contig4417 | 108965 | 109023 | + | TG | ACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAGTTTGGTGCTCAAGGG |
| Tarsier | tarSyr1 | scaffold_999 | 20486 | 20544 | - | TG | ACAGGAACCCACTGGAATCTTTGCTGGGAACTGTGGAACACCAGTTTGGTGCTCAAGGG |
| Lemur | micMur1 | scaffold_5155 | 64688 | 64746 | + | GG | ACAGGAACCCACTGGAGTCTTTGCTGGGGACTGTGGAACACCAGTTTGGTGCTCAAGGG |
| Galago | otoGar1 | scaffold_102006.1-45357 | 7544 | 7602 | - | GG | ACAGGAACCCACTGGAATCTTTGCTGGGAACCGTGGAACACCAGTTTGGTGCTCAAGGG |
| Mouse | mm9 | chr5 | 115247865 | 115247923 | + | GG | ACCGGAATCCACTGGAGTCTCTGCTCGGAACCGTGGAACATCAGTTTGGTGCTCAAGGG |
| Cow | bosTau4 | chr17 | 66566878 | 66566936 | - | CG | ACAGGAACCCACTGGAATCGCTGCTCGGGACTGTGGAACACCAGTTTGGTGCTCAAGGG |
| Dog | canFam2 | chr26 | 20169742 | 20169800 | - | GG | ACAGGAACCCACTGGAATCTCTGCTGGGAACTGTGGAACACCAGTTTGGAGCCCAAGGG |
Alignment (splice site sequences are in lowercase)
Human agACAGGAACCCGCTGGAATCTTTGCTGGGAACTGTGGAACACCAATTTGGTGCACAAGGGgt Chimp g.............................................................. Gorilla g.............................................................. Orangutan g............................................G.....C........... Rhesus g............................................G................. Baboon g............................................G................. Marmoset t............................................G........T........ Tarsier t...........A................................G........T........ Lemur g...........A.....G...........G..............G........T........ Galago g...........A....................C...........G........T........ Mouse g...C....T..A.....G...C....C.....C........T..G........T........ Cow c...........A........GC....C..G..............G........T........ Dog g...........A.........C......................G.....A..C........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29 | uc010agc.2_7_7 | chr13:103491901 | + | AG | AC | (A1) shift; increase; inframe | alternative | BIVM | NP_001153068.1 | NM_001159596.1 | basic immunoglobulin-like variable motif-containing protein |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr13 | 103491901 | 103492215 | + | AG | CCAACATTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAACTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCGGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA |
| Chimp | panTro2 | chr13 | 103750799 | 103751113 | + | AC | CCAACTTTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAGTTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCAGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA |
| Gorilla | gorGor1 | Supercontig_0051668 | 14663 | 14977 | - | AC | CCAACTTTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAATTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCGGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA |
| Orangutan | ponAbe2 | chr13 | 105213135 | 105213449 | + | AC | CCAACTTTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAATTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCGGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA |
| Rhesus | rheMac2 | chr17 | 83138054 | 83138368 | + | AC | CCAACTTTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAACTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACTATTAGACAAGAATCACAACCTCCCACACATGCCCAGGGAATTTCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGAGTCGGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA |
| Baboon | papHam1 | scaffold77 | 112833 | 113147 | - | AC | CCAACTTTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAACTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACTATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTTCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGAGTCGGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA |
| Marmoset | calJac1 | Contig1683 | 253671 | 253985 | - | AC | CCAACTTTTTTTTCTTCTCAGGTTGGAGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAATTGGCAAAGATTTGGCATTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGTCGGTCTTTCAGTGCTAGTTTCCAGCAGGACTCAGCCTGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGCTACAGTGATTACGATGGGAATGATTGA |
| Tarsier | tarSyr1 | scaffold_6922 | 11002 | 11319 | + | AC | CCAACCTTTTTTTTTTCTTTGCAGGTTGGGGGGAATTTGCATTGCATCATAGCATTTCAGAGACTCAGTTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATCAGACAGGAATCACAACCTCCAACACATTCCCAGGGAATCACCAAATCTGAGAGTGAAGACAATATTTCCAAGAAACAGCGTGGGCGTCTGGGCCGGTCTTTCAGTACTAGTTTCCATCAGGACTCGGCATGGAAAAAGATGACTAGTATCCATGAAAGAAGGAACAGTGGCTACCAGGGTTACAGTGATTATGATGGGAATGACTGA |
| Lemur | micMur1 | scaffold_238 | 189534 | 189848 | + | AC | CCAACTTTTTTTCTTGTTTAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAGTTGGCAAAGATTTGGCCTTTGGAATTTTCCATTTGGAAACATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCGGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCGGCATGGAAAAAGATGTCTAGTATCCATGAGCGAAGGAACAGTGGCTACCAGGGTTACAGTGATTATGATGGGAATGATTGA |
| Cow | bosTau4 | chr12 | 76864678 | 76864995 | + | AC | CCAACATTTTTTTTTTCTTCTTAGGTTGGAGGAAACTTGCATTGCATCATAGCATTCCAGAGACTTAGCTGGCAAAGATTTGGCCTTTGGAACTTTCCGTTTGGAACTATTAGACAGGAATCACAGCCTCCAATGCATGCCCATGGAATTGCCAAATCTGAGAGTGAGGACAATATCTCCAAGAAGCAGCACGGGCGCCTGGGCCGGTCTTTTAGTACTGGTTTCCATCAGGACTCAACATGGAAAAAGATGTCCAGTATCCACGAGAGAAGGAACAGTGGCTACCATGGTTACAGTGATTACGAGGGGAATGACTGA |
| Dog | canFam2 | chr22 | 55280775 | 55281088 | + | AC | CCAGCTTCTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATCGCATTCCAGAGACTTAATTGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACGAGAATCACAACCTCCAACACATGCCCAGGGAATTGCTAAATCTGAGAGTGAAGATAATATATCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTTAGTGCTAGTTTCCATCAGGACTCAGCATGGAAAAAGATGTCCAGTATCCATGAGAGAAGGAACAGTGGCTACCAGGGTTACAGTGATTATGATGGGAATGACTGA |
Alignment (splice site sequences are in lowercase)
Human agCCAAC---ATTTTTTTCTTCTCAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTTAACTGGCAAAGA Chimp .c.....---T..........................................................GT......... Gorilla .c.....---T...........................................................T......... Orangutan .c.....---T...........................................................T......... Rhesus .c.....---T..................................................................... Baboon .c.....---T..................................................................... Marmoset .c.....---T....................A......................................T......... Tarsier .c.....CTTT..........TG...........G.......................T........C.GT......... Lemur .c.....---T......CT.GT.T.............................................GT......... Cow .c.....ATTT............T.......A.....C...............................G.......... Dog .c...G.----..C......................................C.................T......... Human TTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATC Chimp ................................................................................ Gorilla ................................................................................ Orangutan ................................................................................ Rhesus .............................T.......................C..................T....... Baboon .............................T..........................................T....... Marmoset ......A......................................................................... Tarsier ................................C.....G.....................T..........CA....... Lemur ..............T.............A................................................... Cow ....................G........T........G........G.......TG........T.............. Dog .....................................G....................................T..... Human TGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCGG Chimp ..............................................................................A. Gorilla ................................................................................ Orangutan ................................................................................ Rhesus ...........................................................................G.... Baboon ...........................................................................G.... Marmoset .............................................T.......................G........A. Tarsier ...........................A....G.........................A..................... Lemur G............................................................................... Cow .........G........C..............C.....C..............T...A..G................AA Dog ............T.....A...................................T.......................A. Human CATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA Chimp ................................................................................ Gorilla ................................................................................ Orangutan ................................................................................ Rhesus ................................................................................ Baboon ................................................................................ Marmoset .C..................................................C........................... Tarsier ..............A.............A..............C....................T...........C... Lemur .............................C.............C....................T............... Cow ................C........C.................C.....T.................G........C... Dog ................C..........................C....................T...........C...
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30 | uc010tqu.1_5_19 | chr14:52985996 | - | AG | AA | (A3) shift; decrease; inframe | alternative | TXNDC16 | NP_001153519.1 | NM_001160047.1 | thioredoxin domain-containing protein 16 | dbSNP:rs28759013 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr14 | 52985890 | 52985996 | - | AG | TGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATTCTCATATGTAAGAGCCATTGGAATACCAG |
| Chimp | panTro2 | chr14 | 51752640 | 51752746 | - | AA | TGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATTCTCATATGTAAGAGCCATTGGAATACCAG |
| Gorilla | gorGor1 | Supercontig_0250740 | 4444 | 4550 | - | AA | TGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATTCTCATATGTAAGAGCCATTGGAATACCAG |
| Orangutan | ponAbe2 | chr14 | 52977264 | 52977370 | - | AA | TGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATTCTCATATGTAAGAGCCATTGGAATACCAG |
| Rhesus | rheMac2 | chr7 | 115485721 | 115485827 | - | AA | TGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATTCTCATATGTAAGAGCCACTGGAATACCAG |
| Baboon | papHam1 | scaffold8127 | 45105 | 45211 | + | AA | TGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATTCTCATATGTGAGAGCCATTGGAATACCAG |
| Marmoset | calJac1 | Contig4476 | 179732 | 179838 | - | AA | TGAAGTGAAATATATTACTAACCTGGAAGACCTTCAAAACATAGAAAATGCTCTGAAAGGGAAAGCAAATATTGTATTCTCATATGTAAAAGCCATTGGGATACCAG |
| Tarsier | tarSyr1 | scaffold_50758 | 463 | 569 | - | AA | TGAAGTAAAATATATTACTACCCTGGACGGCCTTCAGAATGTAGAAAATGCCATGAAAGGAAAAAAGAATATTGTATTTTCATATGTAAGAGCCATTGGTGTACCAG |
| Lemur | micMur1 | scaffold_46693 | 4817 | 4923 | - | AA | TGAAGTAAAATATATTACCACCTTGGAAGACCTGCAGAACATAGAAAATGCTCTGAAAGGAAAGGAAAATATTGTATTCTCATATGTAAGAGCCATTGGAATACCAG |
| Galago | otoGar1 | scaffold_15997.1-66443 | 855 | 961 | - | AA | TGAAGTGAAATATGTTACCACCCAGAAAGACCTGCAGAATGTAGAAAATGCTCTGAAAGGAAAAGAAAATATTATATTCTCATATGTAAGAGCCATCGGAATACCAG |
| Mouse | mm9 | chr14 | 45802721 | 45802827 | - | AA | TGAAGTAAAATATATTACCACCCTGGAAGACCTTCACAGCATAGAAAACTCTCTGAAAGGAAAATCAAATATGATATTCTCATACGTAGAAGCCATCGGAACACCAG |
| Cow | bosTau4 | chr10 | 11448674 | 11448780 | + | AA | TGAAGTAAAATATATTACCACCCTGGGAGACCTTCAGAACATAGAAAATGCTCTAAAAGGGAAAAGAAACATTGCATTCTCATATGTCAGAGCCATTGGAACACCAG |
| Dog | canFam2 | chr8 | 31746032 | 31746138 | - | AA | TGAAGTAAAATATATTACCACCCTGGAAGACCTGCAGAACATAGAAAATGCTCTGAAAGGAAAAGCCAACATTGCATTCGCCTACGTAAGAGCCATTGGAACACCAG |
Alignment (splice site sequences are in lowercase)
Human agTGAAGTGAAATATATTACCAACCTGGAAGACCTTCAGAACATAGAAAATGCTCTGAAAGGAAAAGCAAATATTATATT Chimp .a.............................................................................. Gorilla .a.............................................................................. Orangutan .a.............................................................................. Rhesus .a.............................................................................. Baboon .a.............................................................................. Marmoset .a..................T.................A.......................G............G.... Tarsier .a......A...........T.C......C.G.........TG..........CA...........AAG......G.... Lemur .a......A.............C.T..........G.............................G.A.......G.... Galago .a.............G......C..A.A.......G.....TG........................A............ Mouse .a......A.............C...............C.G.........CT..............T.......G..... Cow .a......A.............C.....G...........................A.....G...AG...C...GC... Dog .a......A.............C............G................................C..C...GC... Human CTCATATGTAAGAGCCATTGGAATACCAGgt Chimp ............................... Gorilla ............................... Orangutan ............................... Rhesus .................C............. Baboon .........G..................... Marmoset ...........A.........G......... Tarsier T....................TG........ Lemur ............................... Galago ..................C............ Mouse ......C...GA......C....C....... Cow .........C.............C....... Dog .G.C..C................C.......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31 | uc001xpi.2_13_13 | chr14:74426256 | - | AG | AA | (A6) exonization; frameshift | alternative | ENTPD5 | O75356 | BC020966.2 | ectonucleoside triphosphate diphosphohydrolase 5 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr14 | 74426233 | 74426256 | - | AG | CACATCATCAGCTGGGTAAATTGA |
| Chimp | panTro2 | chr14 | 73665741 | 73665764 | - | AA | CACATCATCAGCTGGGTAAATTGA |
| Gorilla | gorGor1 | Supercontig_0006692 | 23905 | 23928 | - | AA | CACATCATCAGCTGGGTAAATTGA |
| Orangutan | ponAbe2 | chr14 | 75126553 | 75126577 | - | AA | CACATCATCAGGCTGGGTAAATTAA |
| Rhesus | rheMac2 | chr7 | 137052757 | 137052780 | - | AA | CACATCACTAGCTGGGTATATTGA |
| Baboon | papHam1 | scaffold1627 | 129920 | 129943 | + | AA | CACATCATTAGCTGGGTATATTGA |
| Marmoset | calJac1 | Contig1997 | 106202 | 106225 | - | AA | CACATCATCAGCCAGGTAAGTTGA |
| Tarsier | tarSyr1 | scaffold_22245 | 2039 | 2062 | - | AA | CACATCATCAGCTGGGGACGTTGA |
| Lemur | micMur1 | scaffold_4911 | 84368 | 84391 | - | AA | CACATGATCAGCTGGATAAGTTGA |
| Galago | otoGar1 | scaffold_115816.1-74314 | 36970 | 36992 | - | AA | CACATCATTAGCTGGATACATTA |
| Mouse | mm9 | chr12 | 85712516 | 85712538 | - | AG | CACACCAGCAGCTGGACAAGGGG |
| Cow | bosTau4 | chr10 | 87811771 | 87811788 | - | AA | CACATCATCGGCAGGTGA |
| Dog | canFam2 | chr8 | 50223183 | 50223206 | - | AA | CACATAATCAGCTAGACAAGTTCA |
Alignment (splice site sequences are in lowercase)
Human agCACATCATCA-GCTGGGTAAATTGA Chimp .a..........-.............. Gorilla .a..........-.............. Orangutan .a..........G............A. Rhesus .a.......CT.-........T..... Baboon .a........T.-........T..... Marmoset .a..........-..CA.....G.... Tarsier .a..........-......G.CG.... Lemur .a.....G....-.....A...G.... Galago .a........T.-.....A..C...-. Mouse ......C..G..-.....AC..G-G.G Cow .a.........G-..A..------... Dog .a.....A....-...A.AC..G..C.
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32 | uc001xxw.1_6_6 | chr14:90391021 | - | AG | GG | (A6) exonization; frameshift | alternative | C14orf143 | Q9BUY7-3 | AK298930.1 | hypothetical protein LOC90141 (EF-hand calcium-binding domain-containing protein 11) |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr14 | 90391003 | 90391021 | - | AG | AGGCATTTTCAGTGCATGA |
| Chimp | panTro2 | chr14 | 90041692 | 90041710 | - | GG | AGGCATTTTCAGTGCATGA |
| Gorilla | gorGor1 | Supercontig_0214551 | 22 | 40 | - | GG | AGGCATTTTCAGTGCATGA |
| Orangutan | ponAbe2 | chr14 | 91226506 | 91226524 | - | GG | AGGCGTTTTCGGTGCATGA |
| Rhesus | rheMac2 | chr7 | 153139877 | 153139895 | - | GG | AGGCATTTTTGGTTCATGA |
| Baboon | papHam1 | scaffold51 | 435258 | 435276 | + | GG | AGGCATTTTTGGTTCATGA |
| Marmoset | calJac1 | Contig7268 | 8964 | 8982 | + | GG | AGGCATTTTCAGTTCATGA |
| Lemur | micMur1 | scaffold_33 | 1005922 | 1005940 | - | GG | GGACATTTTCAGCTCATGA |
| Galago | otoGar1 | scaffold_116030.1-389768 | 251149 | 251167 | - | GG | GGACATTTTCAGTTCATGA |
| Cow | bosTau4 | chr10 | 104643186 | 104643204 | - | AG | AGGCATTTTCAGTTCCTGA |
| Dog | canFam2 | chr8 | 64035752 | 64035770 | - | GG | GGTCGCTTGCAATTCACAA |
Alignment (splice site sequences are in lowercase)
Human agAGGCATTTTCAGTGCATGA Chimp g.................... Gorilla g.................... Orangutan g.....G.....G........ Rhesus g..........TG..T..... Baboon g..........TG..T..... Marmoset g..............T..... Lemur g.G.A.........CT..... Galago g.G.A..........T..... Cow ...............T.C... Dog g.G.T.GC..G..A.T..CA.
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33 | uc002elm.1_2_8 | chr16:57473207 | - | AG | GG | (A3) shift; decrease; inframe | alternative | CIAPIN1 | Q6FI81 | AL136613.1 | cytokine induced apoptosis inhibitor 1 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr16 | 57473094 | 57473207 | - | AG | GTTTAGTCCCAGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTGAAGGAGCCAGTAGAGACAGCTGTAG |
| Chimp | panTro2 | chr16 | 56885272 | 56885385 | - | GG | GTTTAGTCCCAGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTGAAAGAGCCAGTAGAGACAGCTGTAG |
| Gorilla | gorGor1 | Supercontig_0056356 | 10154 | 10267 | + | GG | GTTTAGTCCCAGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTGAAAGAGCCAGTAGAGACAGCTGTAG |
| Orangutan | ponAbe2 | chr16 | 44676069 | 44676182 | - | GG | GTTTAGTCCCGGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTGAAAGAGCCAGTAGAGACAGCTGTAG |
| Rhesus | rheMac2 | chr20 | 55787038 | 55787151 | - | GG | GTTTAGTCCCGCGCAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTGAAAGAGCCGGTAGAGACAGCTGTAG |
| Baboon | papHam1 | scaffold2237 | 34748 | 34861 | - | GG | GTTTAGTCCCGGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTGAAAGAGCCGGTAGAGACAGCTGTAG |
| Marmoset | calJac1 | Contig485 | 132855 | 132968 | + | GG | GTTTAGTCCCGGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCAGGATCCTTCGACCTGGTGGATGTCTTTTTCTGAAAGAGCCAGTAGAGACAGCTGTAG |
| Tarsier | tarSyr1 | scaffold_85910 | 757 | 870 | + | GG | GTATCATCCCGGGAAGCACCACTCTGCACAGTGCTGAGGTTTTGGCTGAGATGGCCCGGATCCTTCGGCCTGGTGGATGTCTTATTCTGAAAGAGCCAATAGAAACAACTGTAG |
| Lemur | micMur1 | scaffold_5139 | 40350 | 40463 | - | GG | GTGTAGTCCCGGGAAGCACCACCCTGCACAGTGCTGAGGTTCTGGCTGAGATGGCCCGTATCCTTCGACCTGGTGGATGTCTATTTCTGAAGGAGCCAGTAGAGACAGCCCTAG |
| Mouse | mm9 | chr8 | 97355673 | 97355786 | - | GG | GTGTAGTCCCAGGAAGCACCTCTCTGCACAGTGCTGAGGTTCTGGCTGAGATGGCCCGGATCCTCCGGCCAGGGGGCTGTCTTTTTCTGAAAGAACCAGTGGAGACAGCTGAAG |
| Cow | bosTau4 | chr18 | 25206840 | 25206953 | - | GG | GTATAATTCCTGGAAGCACCACTCTGCACAGTGCTGATATTTTGGCTGAGATGGCCCGGATTCTTCGGCCTGGTGGATGTCTTTTTCTGAAGGAACCGGTAGAGACAGCTGTAG |
| Dog | canFam2 | chr2 | 61863442 | 61863555 | + | GG | GTGTAATTCCTGGAAGCACCACTCTGCACAGCACTGAGATTTTGGCTGAGATGGCCCGGATCCTGCGGCCTGGTGGATGTCTTTTTCTGAGAGAGCCAGTAGAGACAGCTGTAG |
Alignment (splice site sequences are in lowercase)
Human agGTTTAGTCCCAGGAAGCACCACTCTGCACAGTGCTGAGATTTTGGCTGAAATCGCCCGGATCCTTCGGCCTGGTGGAT Chimp g............................................................................... Gorilla g............................................................................... Orangutan g...........G................................................................... Rhesus g...........GC.C................................................................ Baboon g...........G................................................................... Marmoset g...........G.............................................A..........A.......... Tarsier g...A.CA....G...........................G..........G..G......................... Lemur g...G.......G...........C...............G..C.......G..G.....T........A.......... Mouse g...G.................T.................G..C.......G..G...........C.....A..G..C. Cow g...A..A.T..T..........................T...........G..G........T................ Dog g...G..A.T..T....................CA................G..G...........G............. Human GTCTTTTTCTGAAGGAGCCAGTAGAGACAGCTGTAGgt Chimp .............A........................ Gorilla .............A........................ Orangutan .............A........................ Rhesus .............A.....G.................. Baboon .............A.....G.................. Marmoset .............A........................ Tarsier .....A.......A......A....A...A........ Lemur ....A..........................CC..... Mouse .............A..A.....G..........A.... Cow ................A..G.................. Dog ............GA........................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34 | uc010wbi.1_2_8 | chr17:28323324 | + | AG | AT | (A1) shift; increase; inframe | alternative | EFCAB5 | B5MEA3 | AK302745.1 | EF-hand calcium binding domain 5 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr17 | 28323324 | 28323378 | + | AG | TTGCAGATTCAGAATGTTCTTCAAGAATTCTTTCAAAATCCAGATTTCAAGCTTG |
| Chimp | panTro2 | chr17 | 27309929 | 27309983 | - | AT | TTGCAGATTCAGAATGTTCTTCATGAATTCTTTCAAAATCCAGATTTCAAGCTTG |
| Orangutan | ponAbe2 | chr17 | 24767262 | 24767316 | + | AT | TTGCAGATTCAGAATGTTCTTCATGAATTCTTTCAAAATCCAGATTTCAAGCTTG |
| Rhesus | rheMac2 | chr16 | 25234029 | 25234083 | + | AT | TTGCAGATTCAGAATGTTCTTCATGAATTCTTTCAAAATCCAGATTTCAAGCTAG |
| Galago | otoGar1 | scaffold_16576.1-11573 | 3984 | 4038 | + | AT | TTGCAGATTCAAAATGTTCTTCATGAATTTTTTCAAAATACAGATTTTGATCTTG |
| Mouse | mm9 | chr11 | 76982393 | 76982447 | - | CT | CTGCAGATTCAGAATGTCCTTTATGATTTTTTTCAGAAGCCAGAGCTGCATCTTG |
| Cow | bosTau4 | chr19 | 21171133 | 21171187 | + | AT | TTGCAGATTCAGAACGTTCTTTATGAATTTTTTCAAAATCCAGATTTGCAGCTTG |
| Dog | canFam2 | chr9 | 47367685 | 47367739 | + | AT | TTGCAGATTCAGAATGTTCTTCATGAATTTTTTCAAAATCCAGATTTACAGCTTG |
Alignment (splice site sequences are in lowercase)
Human agTTGCAGATTCAGAATGTTCTTCAAGAATTCTTTCAAAATCCAGATTTCAAGCTTGgt Chimp .t.......................T................................. Orangutan .t.......................T................................. Rhesus .t.......................T.............................A... Galago .t...........A...........T.....T.........A.......TG.T...... Mouse ctC................C...T.T..T..T.....G..G.....GC.GC.T...... Cow .t..............C......T.T.....T.................GC........ Dog .t.......................T.....T.................AC........
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35 | uc010whf.1_3_5 | chr17:41059617 | + | AG | GG | (A3) shift; decrease; inframe | alternative | G6PC | B4E1C3 | AK303771.1 | glucose-6-phosphatase |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr17 | 41059617 | 41059645 | + | AG | GGAAAGATAAAGCCGACCTACAGATTTCG |
| Chimp | panTro2 | chr17 | 14614196 | 14614224 | - | GG | GGAAAGATAAAGCCGACCTACAGATTTCG |
| Orangutan | ponAbe2 | chr17 | 46511338 | 46511366 | - | GG | GGAAAGAAAAAGCCGACCTACAGATTTCG |
| Rhesus | rheMac2 | chr16 | 53028841 | 53028869 | + | GG | GGAAAGAAAAAGCCGACCTACAGATTTCG |
| Baboon | papHam1 | scaffold7395 | 101787 | 101815 | - | GG | GGAAAGAAAAAGCCGACCTACGGATTTCG |
| Marmoset | calJac1 | Contig1855 | 280021 | 280049 | - | GG | GGAAAGAAAAAGCCAACCTACAGATTTCA |
| Lemur | micMur1 | scaffold_2280 | 52719 | 52747 | + | GG | GGAAAGAAAAAGCCGACTTACAGATTTCG |
| Galago | otoGar1 | scaffold_116411.1-118332 | 55054 | 55082 | - | GG | GAAAAGAAAAGGACGACCTACAGATTTCG |
| Mouse | mm9 | chr11 | 101234093 | 101234121 | + | GA | GGAAAGAAAAAGCCAACGTATGGATTCCG |
| Cow | bosTau4 | chr19 | 44364219 | 44364247 | + | GT | GGAAAGAAAAAGCCAACCTACAGATTTCG |
| Dog | canFam2 | chr9 | 23456543 | 23456571 | - | GG | GGGAGAAAAAGGCCAACCTACAGATTTCG |
Alignment (splice site sequences are in lowercase)
Human agGGAAAGATAAAGCCGACCTACAGATTTCGgt Chimp g................................ Orangutan g........A....................... Rhesus g........A....................... Baboon g........A.............G......... Marmoset g........A......A.............A.. Lemur g........A.........T............. Galago g..A.....A..G.A.................. Mouse ga.......A......A..G..TG....C.... Cow gt.......A......A................ Dog g...G.GA.A..G...A................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36 | uc010dcc.1_2_8 | chr17:53076987 | + | AG | AA | (A1) shift; increase; inframe | alternative | STXBP4 | AAH41485.1 | BC041485.2 | syntaxin-binding protein 4 | dbSNP:rs11658717 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr17 | 53076987 | 53077203 | + | AG | TACTAGGTTAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCCGACAACATTCAGCCAGAAAATCTGTCATGTACATCACTTATAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTAAGTCTTTTTTCTTCTCCTCCTGAAATACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAATGACATTTTATCTTCTTGTGAG |
| Chimp | panTro2 | chr17 | 54105378 | 54105594 | + | AA | TACTAGGTTAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCCGACAACATTCAGCTAGAAAATCTGTCATGTTCATCACTTATAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTAAGTCTTTTTTCTTCTCCTCCTGAAATACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAGTGCCATTTTATCTTCTTGTGAG |
| Gorilla | gorGor1 | Supercontig_0161187 | 686 | 902 | + | AA | TACTAGGTTAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCTGACNACATTCAGCCAGAAAATCTGTCATGTACATCACTTATAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTAAGTCTTTTTTCTTNTCCTCCTGAANTACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAANGCCATTTTATCTTCTTGTGAG |
| Orangutan | ponAbe2 | chr17 | 37265144 | 37265360 | - | AA | CCCTAGGTTAGGATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCCAACAACATTCAGCCAGAAAATCTGTCATGTACATCACTTATAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTAAGTCTTTTTTCTTCTCCTCCTGAAATACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAATGCCATTTTACCTTCTTGTGAG |
| Rhesus | rheMac2 | chr16 | 39258071 | 39258287 | + | AA | TACTAGGTCAGAATCTGCTTGGGAGATAGCATTCATCAGACAAAAATCCGACAACATTCAGCCAGAAAATCTGTCATGTACATCACTTGTAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTTAGTTTTTTTTCTTCTCCTCCTGAAATACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAATGCCATTTTACCTTCTTGTGAG |
| Baboon | papHam1 | scaffold10534 | 10888 | 11104 | - | AA | TACTAGGTCAGAATCTGCTTGGGAGATAGCATTCATCAGACAAAAATCCAACAACATTCAGCCAGAAAATCTGTCATGTACATCACTTGTAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTTAGTTTTTTTTCTTCTCCTCCTGAAATACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAATGCCATTTTACCTTCTTGTGAG |
| Marmoset | calJac1 | Contig263 | 177199 | 177415 | + | AA | TATTAGGTCAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCCGACAACAGTCAACCAGAAAATCTGTCATGTACATCACTTGTAGAAGCTTCAGGAGAATATATACCTCAAGCCTCAGCATTTAGTCTTTTTTCTTCTCCTCCTGAAACACTAATTCCAAAGACCTCATCCACTCCCAAAACTAACAATGCCATTTTACCTTCTTGTGAG |
| Tarsier | tarSyr1 | scaffold_50645 | 5227 | 5442 | + | AA | TACTAGGTCAGAATCGGCTTGGGAGATAGGATTCATAAGACAAAAATGTGATGGCAGTCATCCAGAAAACCTATCGTGTACATCTCTTGTAGAATTCCACCACAATATGGACCTCAAGCCTCAACACTTAGTCTTGTTTCTTCTCCCTCTGAAATACTAATTCCAAAGACTTCATCCACTCCCAAAACTAACAATGCCATTTTACCTTCTTTTGAG |
| Lemur | micMur1 | scaffold_2398 | 23154 | 23370 | + | AA | TACTAGGTCAGAATCTGCTTGGGAGATAGCATTCAGAAGACAAAAATCTGACAACAATCACCCAGAAAAGCTTTCGTGTACATCCCTTTTAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTTAGTCTTCTTTCTTCTCCCCCTGAAATACTAATTCCAAAGACCTCATCTACTCCCAAAATTAATGATGCAGCTTTACCTTCTTATAAG |
| Galago | otoGar1 | scaffold_116661.1-395716 | 36176 | 36389 | + | AA | TACTAGGTCAGAATCTACTTGGGAGATAGCATTCATAAGACAAAAATCTGATATCCACCATCCAGAAAAGCTATCGTGTGCATCTTTCGAAGCTTCAGAAGAATATGGACCTCAAGCCTCAACATTTAGTCTTCTTCCTTCTCCCCCTGAAATACTAATTCCAAAGACCTCATCCACTCCCAAAATTAATGACGCCATTTTACCTTCTTATGAG |
| Mouse | mm9 | chr11 | 90468291 | 90468504 | - | CA | TCGTAGGTCAGAATCTCCCTGGGAGATAGCATTCATCAGACAAAAGTCTTACTGTGGCCATCCAGGAAATATTTGCTGTCCATCCCCACAAGTGTCAGAAGACTGTGGACCTCAAACCTCAACATTTACTCTTCTTTCCTCTCCCTCTGAAACACTACTTCCAAAGACTTCATCCACTCCCCAGACTCAGGACTCCACTTTCCCTTCTTGTAAA |
| Cow | bosTau4 | chr19 | 4285765 | 4285978 | + | AA | TGCTAGGTCAGAATCTTCTTGGGAGATAGCATTCATAAGACAGAAATCTGACAGCAGCCATTTAGAAAATCCATCTTGTTCATCCCTTTTAGAAGCTACAGGAGAATATGGACCTCATGCCTCAAAATTTAGCCTTATTTCTTCTCCTGAAACACTAATTCCAAAGACCTCATCCACTCCCAGATCTACAGACGCCATTTTACCTTCTTTGAGG |
| Dog | canFam2 | chr9 | 33430051 | 33430267 | + | AA | TGCTAGGTCAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCTGATGGCAGTCATCTAGAAAATCCATCTTGTACATCCCTTTTACAAGCTTCCGGAGAATATGGACCTCAAGCCTCGACATTTAGCCTTCTTCCTTCTCCCCCTGAAATACTAATTCCAAAGACCTCATCCACTCCCCAAACTACAGATACCACTTTATCTTCTTTTAAC |
Alignment (splice site sequences are in lowercase)
Human agTACTAGGTTAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCCGACAACATTCAGCCAGAAAATCTGTCATG Chimp .a..............................................................T............... Gorilla .a................................................T...N......................... Orangutan .aCC.........G.....................................A............................ Rhesus .a........C...........................C......................................... Baboon .a........C...........................C............A............................ Marmoset .a..T.....C...............................................G...A................. Tarsier .a........C......G.............G.................GT..TGG..G...T........C..A..G.. Lemur .a........C..........................G............T.......A...C........G..T..G.. Galago .a........C.......A...............................T..T.T.CAC..T........G..A..G.. Mouse ca.CG.....C.......C.C.................C........G..TT..TGTGGC..T....G....A.T.GC.. Cow .a.G......C.......T.........................G.....T....G..GC..TTT........CA..T.. Dog .a.G......C.......................................T..TGG..G...T.T........CA..T.. Human TACATCACTTATAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTAAGTCTTTTTTCTTCTCCTCCTGAAATAC Chimp .T.............................................................................. Gorilla .................................................................N..........N... Orangutan ................................................................................ Rhesus ..........G........................................T...T........................ Baboon ..........G........................................T...T........................ Marmoset ..........G....................AT.............G....T.........................C.. Tarsier ......T...G.....-T.C..CC.C.......................C.T......G..........CT......... Lemur ......C...T........................................T......C..........C.......... Galago .G....---.T.C..........A...........................T......C..C.......C.......... Mouse .C....C.---C.C...TG....A...C.G..........A..........T.C....C....C.....CT......C.. Cow .T....C...T........A...................T.......A...T..C...A.........---......C.. Dog ......C...T..C.......C.......................G.....T..C...C..C.......C.......... Human TAATCCCAAAGACCTCATCCACTCCCAAAACAAATAATGACATTTTATCTTCTTGTGAGgt Chimp ....................................G..C..................... Gorilla .....................................N.C..................... Orangutan .......................................C.......C............. Rhesus .......................................C.......C............. Baboon .......................................C.......C............. Marmoset ....T..........................T..C....C.......C............. Tarsier ....T........T.................T..C....C.......C......T....a. Lemur ....T..............T..........TT...G...CAGC....C......A.A..a. Galago ....T.........................TT...G.C.C.......C......A....a. Mouse ..C.T........T............C.G..TC.GG.CTC..C...CC........A.A.c Cow ....T......................G.T.T.CAG.C.C.......C......TGAG.ag Dog ....T.....................C....T.CAG..AC..C...........T.A.Ca.
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37 | uc002luw.1_9_10 | chr19:2098975 | + | AG | AA | (A5) exonization; inframe | alternative | IZUMO4 | NP_001026905.2 | NM_001039846.1 | izumo sperm-egg fusion protein 4 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr19 | 2098975 | 2099028 | + | AG | ACCACGCTCCTCTGCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCGGCCTT |
| Chimp | panTro2 | chr19 | 2100056 | 2100109 | + | AA | ACCACGCTCCTCTGCCTTCTTCTGGCCTGGGACACACACAGCCACCCCAGCCTT |
| Gorilla | gorGor1 | Supercontig_0000307 | 136912 | 136965 | - | AA | ACCACGCTCCTCTGCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCAGCCTT |
| Orangutan | ponAbe2 | chr19 | 2075066 | 2075119 | + | AA | ACCACGCTCCTCCTCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCAGCCTT |
| Rhesus | rheMac2 | chr19 | 1885174 | 1885227 | + | AA | ACTACGCTCCTCCTCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCAGCCTT |
| Baboon | papHam1 | scaffold31837 | 8220 | 8273 | - | AA | ACTACGCTCCTCCTCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCAGCCTT |
Alignment (splice site sequences are in lowercase)
Human agACCACGCTCCTCTGCCTTCTCCTGGCCTGGGACACACAGAGCCACCCCGGCCTTgt Chimp .a....................T.................C.........A....... Gorilla .a................................................A....... Orangutan .a............CT..................................A....... Rhesus .a..T.........CT..................................A....... Baboon .a..T.........CT..................................A.......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38 | uc002nhx.1_2_18 | chr19:18197742 | - | AG | GG | (A7) novel start | alternative | IL12RB1 | P42701 | BX647221.1 | interleukin 12 receptor, beta 1 | dbSNP:rs393548 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr19 | 18197570 | 18197742 | - | AG | TCTTTTCTCCTTGCTCAGCTTCAATGTGTTCCGGAGTGGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTCCCCTGGGGCTGTGGGGCTCTACGTGGATCCGATGGAGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCTTCCTCTTCCTGCTGTCCAGGCAGGGCG |
| Chimp | panTro2 | chr19 | 18529673 | 18529845 | - | GG | TCTTTTCTCCTTGCTCAGCTTCAATGTGTTCCGGAGTAGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTCCCCTGGGGCTGTGGGGCTCTACGTGGATCCGATGGGGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCTTCCTCTTCCTGCTGTCCAGGCAGGGTG |
| Gorilla | gorGor1 | Supercontig_0081814 | 5788 | 5960 | + | GG | TCTTTTCTCCTTGCTCAGCTTCAATGTGTTCCGGAGTGGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTCCCCTGGGGCTGTGGGGCTCTACGTGGATCCGATGGGGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCTTCCTCTTCCTGCTGTCCAGGCAGGGCG |
| Orangutan | ponAbe2 | chr19 | 18486094 | 18486266 | - | GG | CCTTTTTTCCTTGCTCAGCTTCAATGTGTTCCGGAGTGGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTCCCCTGGGGCTGTGGGGCTCTGCGTGGATCCGATGGGGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCTTCCTCTTCCTGCTGTCCAGGCAGGGTG |
| Rhesus | rheMac2 | chr19 | 17658284 | 17658456 | - | GG | TCTTTTTCCTTTGTTCAGCTTCAATGTGTTCCGGAGTGGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTCCCCTGGGGCTGTGGGGCTCTGCGTGGATCCAATGGGGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCCTCCTCTTCCTGCGATCCAGGCAGGGTG |
| Baboon | papHam1 | scaffold15696 | 8972 | 9144 | - | GG | TCTTTTTCCCTTGTTCAGCTTCAATGTGTTCCGGAGTGGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTCCCCTGGGGCTGTGGGGCTCTGCGTGGATCCAATGGGGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCCTCCTCTTCCTGCGATCCAGGCAGGGTG |
Alignment (splice site sequences are in lowercase)
Human agTCTTTTCTCCTTGCTCAGCTTCAATGTGTTCCGGAGTGGGGACGGGGTGGCTGAACCTCGCAGGTGGCAGAGAGGCTC Chimp g......................................A........................................ Gorilla g............................................................................... Orangutan g.C.....T....................................................................... Rhesus g.......TC.T...T................................................................ Baboon g.......TC.....T................................................................ Human CCCTGGGGCTGTGGGGCTCTACGTGGATCCGATGGAGCCGCTGGTGACCTGGGTGGTCCCCCTCCTCTTCCTCTTCCTGC Chimp ...................................G............................................ Gorilla ...................................G............................................ Orangutan ....................G..............G............................................ Rhesus ....................G.........A....G...............................C............ Baboon ....................G.........A....G...............................C............ Human TGTCCAGGCAGGGCGgt Chimp .............T... Gorilla ................. Orangutan .............T... Rhesus GA...........T... Baboon GA...........T...
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39 | uc002ohv.1_3_3 | chr19:38795205 | + | AG | GG | (A2) shift; increase; frameshift | alternative | IMUP | Q9GZP8-2 | AB038318.1 | Immortalization up-regulated protein |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr19 | 38795205 | 38795324 | + | AG | GCCTCCAACTTCAGGGGGCTGGGTAAGGGGCGCCGCCTCACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACTCCAGCAGCAGCTCCAGCGATTCGGACACGGATGTGA |
| Chimp | panTro2 | chr19 | 43858069 | 43858187 | + | GG | GCCTCCAACTTCGGGGGCTGGGTAAGGGGCGCCGCCTCACTGCCGCACCTCCATCCAGCAAGGACACCAGAGCTCTTCCGACTCCAGCAGCAGCTCCAGCGATTCGGACACGGATGTGA |
| Orangutan | ponAbe2 | chr19 | 39167295 | 39167413 | + | GG | GCTTCCAACTTCGGGGGCTGGGTAAGGGGCACCGCCTCACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACTCTAGCAGCAGCTCCAGCGACTCGGACACGGATGTGA |
| Rhesus | rheMac2 | chr19 | 44633729 | 44633847 | + | GG | GCTTCCAACTTCGGGGGCTGGGTAAGGGGCACCGCCTCACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACTCCAGCAGCAGCTCCAGCGACTCGGACATGGATGTGA |
| Baboon | papHam1 | scaffold23503 | 5540 | 5658 | - | GG | GCTTCCAACTTCGGGGGCTGGGTAAGGGGCACCGCCTCACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACTCCAGCAGCAGCTCCAGCGACTCGGACACGGATGTGA |
| Marmoset | calJac1 | Contig12262 | 23968 | 24085 | + | GG | GCTTCCAACTTCAGGGGATGCGTAGGGGCCCTGCCTCACTGCCACACCCCCATCCAGCAAGGCCGCCACAGCTCTTCGGACTCCAGCAGCAGCTCCAGCGACTCGGACACGAATGTGA |
Alignment (splice site sequences are in lowercase)
Human agGCCTCCAACTTCAGGGGGCTGGGTAAGGGGCGCCGCCTCACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTT Chimp g.............-.........................................................G....... Orangutan g...T.........-..................A.............................................. Rhesus g...T.........-..................A.............................................. Baboon g...T.........-..................A.............................................. Marmoset g...T.........-A....A..C..-......C.T...........A....C.............C.G........... Human CCGACTCCAGCAGCAGCTCCAGCGATTCGGACACGGATGTGA Chimp .......................................... Orangutan .......T.................C................ Rhesus .........................C.......T........ Baboon .........................C................ Marmoset .G.......................C.........A......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40 | uc002qfm.1_3_10 | chr19:54872813 | - | AG | GG | (A3) shift; decrease; inframe | alternative | LAIR1 | Q6GTX8-3 | AF251509.2 | Leukocyte-associated immunoglobulin-like receptor 1 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr19 | 54872523 | 54872813 | - | AG | ATCTGCCCAGACCCTCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAACATTCCGCCTGGAGAGGGAGAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAGTAAGTGAAGGAAATGCCGGGCCTTATCGCTGCATCTATTATAAGCCCCCTAAATGGTCTGAGCAGAGTGACTACCTGGAGCTGCTGGTGAAAG |
| Chimp | panTro2 | chr19 | 60085639 | 60085929 | - | GG | CCCTGCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGTGATCCCCCAGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAACATTCCGCCTGGAGAGGGAGAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAGTAAGTGAAGGAAATGCCGGGCTTTATCGCTGCATCTATTATAAGCCCCCTAAATGGTCTGAGCAGAGTGACTACCTGGAGCTGCTGGTGAAAG |
| Orangutan | ponAbe2 | chr19 | 56172321 | 56172611 | - | GG | CCCTGCCCAGACCCTCCATCTCGGCTGAGCCAGGCACCACGATCCCCCCGGGAAGCCGTGTGACTTTCGTGTGCCGGGGCCCGGCTGGGGTTCAAACATTCCGCCTGGAGAGGGAGAGTAGATCCAAGTACAATGATACTAATGACGTGTCTCAAGCTAGTTCATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAGTAAGTGAAGACAGTGCTGGGTGTTATCGCTGCCTCTATTTTAAGTCCTCCAGATGGTCTGAGCACAGTGACTACCTGGAGCTGCTGGTGAAAG |
| Rhesus | rheMac2 | chr19 | 60508309 | 60508599 | - | GC | CCCTGCCCAGACCCTCCATCTCAGCTGAGCCAGGCACCGTGATCCCCCCGGGGAGGCCTGTGACTATCGTGTGCCGGGGCCCGGTTGGGGTTGACCAATTCCGCCTGGAGTGGGAGGGTAGATCCAAGTTCGATGATACTAAGAATGTGTCTCAAGCTAGTTCATCTGAGTCCGAGACCAGATTCCGCATTGACTCAGTAAGTGAAGGAAATGCCGGACATTATCGCTGCCTCTATGTGAAGTCCAGCAGATGGTCTCAGCGCAGTGACTACCTGGACCTGGTGGTGAAAG |
| Marmoset | calJac1 | Contig7093 | 14251 | 14541 | - | GG | CCCTGCCCAGACCCTCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCCTGTGACTTTCGTGTGCCGGGGCCCAGTTGGGGTTCACGAATTCCGCCTGGAGAGGGAGAATAGAGCCCAGTACAAAGATAATTATGATGTGTCTCTAGTTAGTCCATTTTTGTCAGAGGCCACATTCCGCATTGACTCAGTGAGTGAGGACAGCGCCGGGCATTATCGCTGCATCTATCATAAGGCCTCCAGATGGTCTCAGCACAGTGAGCAGCTGGAGCTGGTGGTGAAAG |
| Tarsier | tarSyr1 | scaffold_442100 | 350 | 655 | + | GG | TCCTGCCCAGACCCTCCATCTCCACTGAGCCAGATGCTGTGATCCCACTGTTACTGCCTGTGACCCTAGTGTGCCAGGGCCCAGCTAGCATTGAGAAATTCCATCTGGAGAGGGAGGGTAGAACAAATGGGTTCAGAGATGCTAAACTTCAGTCTCAGTTTGACGTTTCTGAAACAGAGGCCAGATTCCCCATCGACTCACTAACTGAAGATAATGCTGGGAATTATCACTGTGTCTATCTGGATGCAGAGTTCTGTATCTGGTCTGAGCCCAGTGACTACCTGAAGCTGGTGTTGTATGTGACAG |
| Dog | canFam2 | chr1 | 105992347 | 105992625 | + | GG | TCCTGCCCAGCCCCTCCATCTGGGCCCAGCCGAGCTCTGAGATTCCCCGGGGGCAGCCGGTGACCATCGTGTGCCAGGGCCCTGCTGGGGCTGAGACATTCCGCCTGGAGAAGGAGGGAAGTGCTCTACATAAAGATGTGAGGAACCCACAACATGAGACGCAGGCCAGATTCCCCATCCCTGCGGTGGGTGAAGACACTGCCCGGCGCTATCGCTGCCTCTATAATAAAGACGGCACCTGGTCTGACCGCAGCAAGGAACTGCAGCTGGTGGTGACAG |
Alignment (splice site sequences are in lowercase)
Human agATCTGCCCAGACCCTCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGG Chimp g.CC...................................T..........A............................. Orangutan g.CC....................................AC........C...A....G.................... Rhesus gcCC....................A.........................C......G.C.......A............ Marmoset g.CC.......................................................C.................... Tarsier g.TC....................CA.........ATG.T........A...TTACTG.C......CC.A.......A.. Dog g.TC........C..........G...CC....GA..T.T.A...T....G....CAG.CG.....CA.........A.. Human GCCCGGTTGGGGTTCAAACATTCCGCCTGGAGAGGGAGAGTAGATCCAC---ATACAATGATACTGAAGATGTGTCTCAA Chimp .................................................---............................ Orangutan ......C.........................................A---G............A.T..C......... Rhesus ..............G.CCA.............T.....G.........A---G.T.G........A.GA........... Marmoset ....A...........CGA....................A....G..CA---G.....A....A.T.T..........T. Tarsier ....A.C.A.CA..G.G.A.....AT............G.....A.A.ATGGG.T..GA...G..A..CT.CA......G Dog ....T.C.....C.G.G................A....G.A..TG.TCT---.C.T..A...GTGAGGA.CCCACAA..- Human GCTAGTCCATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAGTAAGTGAAGGAAATGCCGGGCCTTATCGCTGCATCTA Chimp ................................................................T............... Orangutan ......T.............................................AC.G...T...TG..........C.... Rhesus ......T..........C...A........................................A.A..........C.... Marmoset .T........T.TT...........C..................G.....G.AC.GC.......A............... Tarsier TT.GACGTT.....AA...............C...C......C...C.....AT.....T...AA.....A...TG.... Dog -----------....A.GC............C...CCCTG.G..GG......AC.C....C...GC.........C.... Human TTAT------AAGCCCCCTAAATGGTCTGAGCAGAGTGACTACCTGGAGCTGCTG------GTGAAAGgt Chimp ....------.............................................------......... Orangutan ..T.------...T..T.C.G............C.....................------......... Rhesus .GTG------...T..AGC.G.......C...GC..............C...G..------......... Marmoset .C..------...G..T.C.G.......C....C.....GC.G.........G..------......... Tarsier .CTGGATGCAG..TT.TG..TC..........CC............A.....G..TTGTAT....C.... Dog .A..------..AGA.GGC.CC........C.GC..CA.GG.A...C.....G..------....C....
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41 | uc002qiy.2_10_22 | chr19:55606968 | - | AG | TG | (A3) shift; decrease; inframe | alternative | PPP1R12C | Q9BZL4-3 | AB209452.1 | protein phosphatase 1, regulatory subunit 12C | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr19 | 55606813 | 55606968 | - | AG | CTTGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGTTCTGGTGCCCTGGGTCCCCCTGAAAGGCGGACAGCGGAGGGAGCCCCTGGGGCTGGGCTGCAGCGCTCGGCTTCCTCCTCCTGGCTGGAAGGGACCTCCACTCAG |
| Chimp | panTro2 | chr19 | 60802240 | 60802395 | - | TG | CCTGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGTTCTGGTGCCCTGGGTCCCCCGGAAAGGCGGACAGCGGGGGGAGCCCCAGGGGCTGGGCTGCAGCGCTCGGCTTCCTCCTCCTGGCTGGAAGGGACCTCCACTCAG |
| Gorilla | gorGor1 | Supercontig_0033789 | 5229 | 5384 | - | TG | CCTGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGTTCTGGTGCCCTGGGTCCCCCGGAAAGGCGGACAGCGGGGGGAGCCCCTGGGGCTGGGCTGCAGCGCTCGGCTTCCTCCTCCTGGCTGGAAGGGACCTCCACTCAG |
| Rhesus | rheMac2 | chr19 | 61094103 | 61094258 | - | CG | CCTGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGTTCTGGTGCCCTGGGTCCCCCGGAAAGGCGGATGGCAGAGGGAGCCCCGGGGGCTGGGCTGCAGCGCTCGGCTTCCTCCTCCTGGCTGGAAGGGACCTCCACCCAG |
| Baboon | papHam1 | scaffold155 | 354862 | 355017 | + | CG | CCTGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGTTCTGGTGCCCTGGGTCCCCCAGAAAGGCGGATGGCAGAGGGAGCCCCTGGGGCTGGGCTGCAGCGCTCAGCTTCCTCCTCCTGGCTGGAAGGGACCTCCACCCAG |
| Marmoset | calJac1 | Contig12146 | 30106 | 30261 | + | CG | CCCGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGCTCTGGTGCCCTGGGTCCCCCGGAAAGGCGGGCAGCAGAGGGAGCCCCCGGAGCTGGGCTGCAGCGATCAGCTTCCTCCTCCTGGCTGGAAGGGACCTCTGCTCAG |
| Lemur | micMur1 | scaffold_5809 | 4634 | 4789 | - | TG | CCCGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCAGAAGACAGGGAGCTCTGGGGCCCTGGGGCCCCCAGAAAGGCGGGGGTCTGAGGGAGCCCCTGGGGCTGGGCTGCAGCGCTCAGCTTCGTCCTCTTGGCTGGAAGGGACATCCTCCCAG |
| Galago | otoGar1 | scaffold_80905.1-72057 | 71179 | 71334 | - | TG | CCTGGAGAAGCCCCCTTCTCCCGGCACTTTGGCCTCCAGAAGACAGGGAGCTCTGGGACCTTGGGACCCCCAGCAAGGTGGGGAGCTGAAGGAGCCCCTGGGACGGGGCTGCAGCGTTCAGCTTCATCCTCTTGGCTGGAAGGGACCTCCACCCAG |
| Mouse | mm9 | chr7 | 4436221 | 4436370 | - | TG | CCAGAAGAGGCTCCCTTTTCCAGGCGCTTTGGTCTCCAGAAGACAGGGAGCACTGGTGCCTTGGGTCCTTCAGAAAGGAGGGCTACAGAGGGCGTTCTCGGTCTGCAGCGCTCAGCCTCCTCCTCCCTCCTTGAGAAGGCCTCCACTCAG |
| Cow | bosTau4 | chr18 | 62728138 | 62728293 | + | CC | CCCGAGGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCAGAAGACTGGCAGCTCTGGGGCTCTGGGGCCCACGGACTGGCGCGGGGCTGAGGGCACCCCGGGGGCCGGGCTGCAGCGCTCCGCGTCCTCCTCGCGGCTGGAGGGTGCGTCCACTCAG |
| Dog | canFam2 | chr1 | 105588365 | 105588520 | + | CC | TCAGAGGAGGCTCCCTTCGCCAGGCGCTTTGGCCTCCAGAAGATGGGGAGCTCTAGTACCCTGGGTCCCACAGACAGACGGGAGGCTGAGGGCACCCCTGGGGTGGGGCTACAGCGCTCAGCTTCCTCCTCTTGGCTGGAAGGGACCTCCATTCAG |
Alignment (splice site sequences are in lowercase)
Human agCTTGAAGAGGCCCCCTTCTCCAGGCGCTTTGGCCTCCTGAAGACAGGGAGTTCTGGTGCCCTGGGTCCCCCTGAAAGG Chimp t..C.....................................................................G...... Gorilla t..C.....................................................................G...... Rhesus c..C.....................................................................G...... Baboon c..C.....................................................................A...... Marmoset c..CC...............................................C....................G...... Lemur t..CC..................................A............C.....G........G.....A...... Galago t..C..G...A............C...A...........A............C.....GA..T....A.....A.C.... Mouse t..CA........T.....T..............T....A............CA........T.......TT.A...... Cow cc.CC..G...............................A......T..C..C.....G..T.....G...A.G..CT.. Dog ccTCA..G.....T......G..................A.....TG.....C...A..A...........A.A..C..A Human CGGACAGCGGAGGGAGCCCCTGGGGCTGGGCTGCAGCGCTCGGCTTCCTCCTCCTGGCTGGAAGGGACCTCCACTCAGgt Chimp ..........G.........A........................................................... Gorilla ..........G..................................................................... Rhesus ....TG..A...........G.....................................................C..... Baboon ....TG..A................................A................................C..... Marmoset ...G....A...........C..A..............A..A.............................TG....... Lemur ...GGGT.T................................A.....G.....T..............A...T.C..... Galago T..GG...T..A............A.G...........T..A.....A.....T....................C..... Mouse A..G.TA.A.....C.TT.------TC..T...........A..C.........CTC..T..GAA.G............. Cow ..CGGG..T.....CA....G.....C..............C..G........GC.......G..TG.G........... Dog ...GAG..T.....CA.........TG.....A........A...........T...................T......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42 | uc002wkk.1_5_8 | chr20:4163130 | + | AG | GG | (A8) intronization; inframe | alternative | SMOX | NP_787034.1 | NM_175840.1 | spermine oxidase |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr20 | 4163130 | 4163495 | + | AG | GTGTGCTAAAGAGGCAGTACACCAGTTTCTTCCGGCCAGGCCTGCCCACAGAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGCACCACCGACAAGATCTTTCTGGAATTCGAGGAGCCCTTCTGGGGCCCTGAGTGCAACAGCCTACAGTTTGTGTGGGAGGACGAAGCAGAGAGCCACACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGATGTCCTCTACCCGCCTGAGCGCTACGGCCATGTGCTGAGCGGCTGGATCTGCGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATGACGAGGCAGTGGCCGAGATCTGCACGGAGATGCTGCGTCAGTTCACAG |
| Chimp | panTro2 | chr20 | 4078291 | 4078656 | + | GG | GCGTGCTGAAGAGGCAGTACACCAGTTTCTTCCGGCCAGGCCTGCCCACAGAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGCACCACCGACAAGATCTTTCTGGAATTCGAGGAGCCCTTCTGGGGCCCTGAGTGCAACAGCCTACAGTTTGTGTGGGAGGACGAGGCGGAGAGCCACACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGATGTCCTGTACCCGCCTGAGCGCTACGGCCATGTGCTGAGCGGCTGGATCTGCGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATGACGAGGCAGTGGCCGAGATCTGCACGGAGATGCTGCGTCAGTTCACAG |
| Gorilla | gorGor1 | Supercontig_0001059 | 24953 | 25318 | + | GG | GCGTGCTGAAGAGGCAGTACACCAGTTTCTTCCGGCCAGGCCTGCCCACAGAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGNACCACNGACAAGATCTTTCTGGAATTCGAGGAGCCCTTCTGGGGCCCTGAGTGCAANAGCCTACAGTTTGTGTGGGAGGACGAAGCGGAGAGCCACACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGATGTCCTCTACCCGCCTGAGCGCTACGGCCATGTGCTGAGCGGCTGGATCTGCGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATGACGAGGCAGTGGCCGAGATCTGCACGGAGATGCTGCGTCAGTTCACAG |
| Orangutan | ponAbe2 | chr20 | 24106046 | 24106411 | - | GG | GCGTGCTGAAGAGGCAGTACACCAGTTTCTTCCGGCCAGGCCTGCCCACAGAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGCACCACCGACAAGATCTTTCTGGAATTCGAGGAGCCCTTCTGGGGCCCTGAGTGCAACAGCCTACAGTTTGTGTGGGAGGACGAAGCGGAGAGCCACACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAAATCTGTGGCTTTGATGTCCTCTACCCGCCTGAGCGCTATGGCCATGTACTGAGCGGCTGGATCTGTGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATGACGAGGCAGTGGCCGAGATCTGCACGGAGATGCTGCGTCAGTTCACAG |
| Marmoset | calJac1 | Contig311 | 60621 | 60986 | + | GG | GCGTGCTGAAGAGGCAGTACACCAGCTTCTTCCGGCCAGGCCTGCCCACAGAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGCACCACTGACAAGATCTTTCTGGAATTCGAGGAGCCCTTCTGGGGCCCCGAGTGCAATAGCTTACAGTTTGTGTGGGAGGATGAGGCAGAGAGCCGCACCCTCACCTACCCACCCGAGCTCTGGTACCGCAAGATCTGCGGTTTCGATGTCCTCTACCCGCCTGAGCGCTACGGCCACGTGCTGAGTGGCTGGATCTGCGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATGACGAGGCAGTGGCCGAGATCTGCACAGAGATGCTGCGTCAGTTCACAG |
| Tarsier | tarSyr1 | scaffold_39304 | 8203 | 8568 | - | GG | GTGTGCTCAAGAGGCAGTACACCACCTTCTTCCGGCCAAGCCTGCCCACGGAGAAGGTGGCCGCCATCCACCGCCTGGGCATCGGCACCACTGACAAGATCTTTCTTGAATTCGAGGAGCCCTTCTGGGGCCCTGAGTGCAACAGCCTACAGTTTGTGTGGGAGGATGAGGCAGAGAGCCGCACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTCGATGTCCTCTACCCGCCGGAGCGCTACGGCCACGTGCTGAGTGGCTGGATCTGCGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATGATGAGGCTGTGGCTGAGATCTGCACGGAGATGCTGCGTCAGTTCACAG |
| Lemur | micMur1 | scaffold_1675 | 138705 | 139070 | + | GG | GCGTGCTCAAGAGGCAGTACACCAGCTTCTTCCGGCCGGGCCTGCCCGCGGAGAAGGTGGCCGCCATCCACCGCCTGGGCATCGGCACCACCGACAAGATCTTTCTCGAGTTCGAGGAGCCCTTCTGGGGCCCCGAGTGCAACAGCCTCCAGTTTGTGTGGGAGGACGAGGCGGAGAGCCGCACCCTCACCTACCCGCCCGAGCTCTGGTACCGCAAGATCTGCGGCTTCGACGTCCTCTACCCGCCCGAGCGCTACGGCCACGTCCTGAGCGGCTGGATCTGCGGGGAGGAGGCCCTAGTCATGGAGAGGTGCGACGACGAGGCGGTGGCCGAGATCTGCACCGAGATGCTGCGTCAGTTCACAG |
| Mouse | mm9 | chr2 | 131346542 | 131346907 | + | GG | GCGTGCTCAAGAGGCAGTACACCAGTTTCTTTAGGCCATGCCTGCCCACGGAGAAGGTGGCCGCCATCCACCGCCTGGGCATTGGTACCACTGACAAGATCTTCCTTGAATTTGAGGAGCCCTTTTGGGGCCCCGAGTGCAACAGCCTGCAGTTCGTGTGGGAGGATGAGGCAGAGAGCTGTACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGTGGCTTCGATGTCCTTTATCCGCCAGAGCGCTATGGCCATGTGCTGAGTGGCTGGATCTGTGGGGAGGAGGCTCTTGTCATGGAGAGGTGCGATGACGAGGCTGTAGCTGAGATCTGCACAGAGATGCTTCGACAGTTCACAG |
| Cow | bosTau4 | chr13 | 51504794 | 51505159 | - | GG | GCGTGCTCAAGAGGCAGCATGCCAGCTTCTTTCGGCCAGGCCTGCCCGCCGAGAAGGTGGCTGCCATCCACCGACTGGGCATCGGCACCACTGACAAGATCTTTCTAGAATTCGAGGAGCCCTTCTGGGGCCCCGAGTGCAACAGCCTACGGTTTGTGTGGGAGGACGAGGCGGAGAGCTGCACGCTCACCTACCCGCCCGAGCTTTGGTACCGCAAGATCTGTGGCTTTGATGTCCTCTACCCGCCTGAGCGATACGGCCATGTGCTGAGTGGCTGGATCTGTGGGGAGGAGGCCCTTGTCATGGAGAAGTGTGATGACGAGGCAGTGGCCGAGATCTGCACAGAGATGCTGCGGCAGTTCACAG |
| Dog | canFam2 | chr24 | 20253745 | 20254110 | - | GG | GTGTGCTCAAGAGGCAGTACACCAGCTTCTTCCGGCCAGGCCTGCCTGCTGAGAAGGTGGCTGCCATCCACCGCCTGGGCATCGGCACCACTGACAAGATCTTTCTGGAATTTGAGGAGCCCTTCTGGGGCCCTGAGTGCAACAGCCTACAGTTTGTGTGGGAGGACGAGGCGGAGAGCCGCACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGTGGCTTTGACGTGCTCTACCCACCTGAGCGCTATGGCCACGTGCTGAGCGGCTGGATCTGCGGGGAGGAGGCCCTTGTCATGGAGAAGTGTGATGACGAGGCGGTGGCTGAGATCTGCACAGAGATGCTGCGGCAGTTTACAG |
Alignment (splice site sequences are in lowercase)
Human agGTGTGCTAAAGAGGCAGTACACCAGTTTCTTCCGGCCAGGCCTGCCCACAGAGAAGGTGGCTGCCATCCACCGCCTGG Chimp g..C.....G...................................................................... Gorilla g..C.....G...................................................................... Orangutan g..C.....G...................................................................... Marmoset g..C.....G.................C.................................................... Tarsier g........C................CC............A..........G...........C................ Lemur g..C.....C.................C...........G.........G.G...........C................ Mouse g..C.....C.......................TA.....T..........G...........C................ Cow g..C.....C.........C.TG....C.....T...............G.C.......................A.... Dog g........C.................C....................TG.T............................ Human GCATTGGCACCACCGACAAGATCTTTCTGGAATTCGAGGAGCCCTTCTGGGGCCCTGAGTGCAACAGCCTACAGTTTGTG Chimp ................................................................................ Gorilla .......N.....N..................................................N............... Orangutan ................................................................................ Marmoset .............T.........................................C........T...T........... Tarsier ....C........T..............T................................................... Lemur ....C.......................C..G.......................C..............C......... Mouse .......T.....T...........C..T.....T...........T........C..............G.....C... Cow ....C........T..............A..........................C................G....... Dog ....C........T....................T............................................. Human TGGGAGGACGAAGCAGAGAGCCACACCCTCACCTACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGATGTCCT Chimp ...........G..G................................................................. Gorilla ..............G................................................................. Orangutan ..............G............................................A.....T.............. Marmoset ........T..G..........G..................C..........................T..C........ Tarsier ........T..G..........G................................................C........ Lemur ...........G..G.......G...............G..C.............................C..C..... Mouse ........T..G.........TGT.........................................T.....C........ Cow ...........G..G......TG...G...........G..C.....T.................T.............. Dog ...........G..G.......G..........................................T........C..G.. Human CTACCCGCCTGAGCGCTACGGCCATGTGCTGAGCGGCTGGATCTGCGGGGAGGAGGCCCTCGTCATGGAGAAGTGTGATG Chimp G............................................................................... Gorilla ................................................................................ Orangutan ..................T........A.................T.................................. Marmoset ........................C........T.............................................. Tarsier .........G..............C........T.............................................. Lemur .........C..............C..C................................A..........G...C..C. Mouse T..T.....A........T..............T...........T...........T..T..........G...C.... Cow ...............A.................T...........T..............T................... Dog ......A...........T.....C...................................T................... Human ACGAGGCAGTGGCCGAGATCTGCACGGAGATGCTGCGTCAGTTCACAGgt Chimp .................................................. Gorilla .................................................. Orangutan .................................................. Marmoset .........................A........................ Tarsier .T.....T.....T.................................... Lemur .......G.................C........................ Mouse .......T..A..T...........A........T..A............ Cow .........................A...........G............ Dog .......G.....T...........A...........G.....T......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43 | uc010zta.1_13_14 | chr20:25205798 | + | AG | GG | (A2) shift; increase; frameshift | alternative | ENTPD6 | B4DDM7 | AK293256.1 | ectonucleoside triphosphate diphosphohydrolase 6 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr20 | 25205798 | 25205953 | + | AG | GTGGGAGTCACCTGGAGCGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAG |
| Chimp | panTro2 | chr20 | 25573876 | 25574031 | + | GG | GTGGGAGTCACCTGGAGCGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCGCAGAGCAGCCCCTTCGCGTGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTACTGAAG |
| Gorilla | gorGor1 | Supercontig_0015712 | 14126 | 14281 | - | GG | GTGGGAGTCACCTGGAGTGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCTGCAGAGCAGCCCCTTCGCGTGCATGGACCTCACCTATGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAG |
| Orangutan | ponAbe2 | chr20 | 20381994 | 20382149 | + | GG | GTGGGAGTCACCTGGAGCGTGAAGGAACATGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCACAGAGCGGCCCCTTCGCGTGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAG |
| Rhesus | rheMac2 | chr10 | 58420535 | 58420690 | + | GG | GTGGGAGTCACCTGGAGCCTGAAGGGATGTGTCTCCTCCCCAGTGTGTCGGACCCTGGAGACACAGCCACAGAGCAGCCCCTTTGCGTGCATGGACCTCACCTACGTCAGCTTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAG |
| Baboon | papHam1 | scaffold11720 | 38019 | 38174 | + | GG | GTGGGAGTCACCTGGAGCCTGAAGGGATGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCACAGAGCAGCCCCTTTGCGTGCATGGACCTCACCTACGTCAGCTTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAG |
| Marmoset | calJac1 | Contig363 | 362719 | 362874 | + | GG | GAGGGAGTCACCCGGAGCCTAATGGGGTGCATCTCATCCCCAGTGTGTCAGACCCTGGAGACGCAGCCGCAGCGCAGCCCCTTCGCGTGCATGGACCTCACCTACGTCACCCTGCTGCTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAG |
Alignment (splice site sequences are in lowercase)
Human agGTGGGAGTCACCTGGAGCGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCGCAGAGCAGC Chimp g............................................................................... Gorilla g..................T.................................................T.......... Orangutan g..........................A..A.......................................A......G.. Rhesus g...................C........T.......C................................A......... Baboon g...................C........T........................................A......... Marmoset g..A..........C.....C.A.T...GT.CA..................A............G.........C..... Human CCCTTCTCATGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAGgt Chimp ......G.G..............................................................A........ Gorilla ......G.G.................T..................................................... Orangutan ......G.G....................................................................... Rhesus .....TG.G........................T.............................................. Baboon .....TG.G........................T.............................................. Marmoset ......G.G......................C......G.........................................
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44 | uc002xvp.1_4_4 | chr20:49457074 | + | AG | AA | (A6) exonization; frameshift | alternative | BCAS4 | Q8TDM0-2 | BC056883.1 | breast carcinoma amplified sequence 4 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr20 | 49457074 | 49457079 | + | AG | AGTTAA |
| Chimp | panTro2 | chr20 | 48323369 | 48323374 | + | AA | AGTTAA |
| Gorilla | gorGor1 | Supercontig_0016971 | 10881 | 10886 | - | AA | AGTTAA |
| Orangutan | ponAbe2 | chr20_random | 3713112 | 3713117 | + | AA | AGTTAA |
| Baboon | papHam1 | scaffold1094 | 99326 | 99331 | + | CA | AGTTAA |
| Tarsier | tarSyr1 | scaffold_421235 | 585 | 590 | + | AA | AGTTAA |
| Lemur | micMur1 | scaffold_1034 | 106718 | 106723 | - | AA | AGTTAA |
| Galago | otoGar1 | scaffold_15386.1-201357 | 189667 | 189672 | + | AA | AGTTAA |
Alignment (splice site sequences are in lowercase)
Human agAGTTAA Chimp .a...... Gorilla .a...... Orangutan .a...... Baboon ca...... Tarsier .a...... Lemur .a...... Galago .a......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45 | uc010gpg.1_8_11 | chr21:44274733 | - | AG | GG | (A3) shift; decrease; inframe | alternative | WDR4 | P57081-2 | AK292923.1 | WD repeat domain 4 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr21 | 44274672 | 44274733 | - | AG | TTTGCCGCGTCCAGGATTGCATTCTGGTGCCAGGAGAACTGCGTGGCGCTCCTGTGCGACGG |
| Chimp | panTro2 | chr21 | 42546504 | 42546565 | - | GG | TTTGCCGCGTCCAGGATTGCGTTCTGGTGCCAGGAGAACTGCGTGGCGCTCCTGTGCGACGG |
| Gorilla | gorGor1 | Supercontig_0026333 | 12392 | 12453 | - | GG | TTTGCCGCATCCAGGATTGCGTTCTGGTGCCAGGAGAACTGCGTGGCGCTCCTGTGCGACGG |
| Orangutan | ponAbe2 | chr21 | 44236935 | 44236996 | - | GG | TTTGCCGCGTCCAGGATTGCGTTCTGGTGCCAGGAGAACTGCGTGGCGCTCCTGTGCGACGG |
| Rhesus | rheMac2 | chr3 | 3828387 | 3828448 | + | GG | TTTGCTGCATCCAGGATTGCGTTCTGGTGCCAGGAGAACTGCGTGGCGCTTCTGTGTGACGG |
| Baboon | papHam1 | scaffold20420 | 29247 | 29308 | + | GG | TTTGCTGCGTCCAGGATTGCGTTCTGGTGCCAGGAGAACTGCGTGGCGCTTCTGTGCGACGG |
| Marmoset | calJac1 | Contig8290 | 40772 | 40833 | - | GG | CTGGCCGCGTCCAGGATTGCATTCTGGTGCCAGGAGAACTGCGTGGCGCTCCTGTGCGACAG |
| Tarsier | tarSyr1 | scaffold_84308 | 7004 | 7065 | - | GG | TTTGCTGCATCCAGGATTGTGTTCTGGTGCCAGGAGAGTTGTGTGGCACTTCTGTGTGACTG |
| Galago | otoGar1 | scaffold_106534.1-50619 | 46162 | 46223 | - | GG | TTTGCCGCGTCCAGGATTGCCTTCTGGTGCCAGGAAGGCTGCGTCGCACTTCTGTGTGACAG |
| Cow | bosTau4 | chr1 | 146138590 | 146138651 | + | GG | TTTGCCGTGTCCAGGATCACTTACTGGAGCCAGGAGGACTGCGTGGCGCTCTCGTGTGACGG |
| Dog | canFam2 | chr31 | 39416257 | 39416318 | - | GG | TTTGCTGCATCCAGGATCGCTTACTGGAGCCAGGAGAGCTGTGTGGCGCTGCTGTGTGACTG |
Alignment (splice site sequences are in lowercase)
Human agTTTGCCGCGTCCAGGATTGCATTCTGGTGCCAGGAGAACTGCGTGGCGCTCCTGTGCGACGGgt Chimp g.....................G........................................... Gorilla g.........A...........G........................................... Orangutan g.....................G........................................... Rhesus g......T..A...........G.............................T.....T....... Baboon g......T..............G.............................T............. Marmoset g.C.G.........................................................A... Tarsier g......T..A..........TG................GT..T.....A..T.....T...T... Galago g.....................C..............AGG......C..A..T.....T...A... Cow g........T.........CA.T.A....A........G..............TC...T....... Dog g......T..A........C..T.A....A.........G...T........G.....T...T...
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46 | uc010guy.1_14_40 | chr22:26231260 | + | AG | AC | (A1) shift; increase; inframe | alternative | MYO18B | B0QYF5 | AY077700.1 | myosin XVIIIB | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr22 | 26231260 | 26231410 | + | AG | CAGGTCCGCTTACCAGCTGGAGGAGGTGCCCAGGATGCCAGAGGCCTTTTCTGGGTCTTAGATGAGGAAGTCCATGTAGAGGGCTCCAGTGACAGTGTGGTGCTCGAGCGTCTGTGTGCTGCTTTCGAGAAGAAAGGAGCTGGGACTGAAG |
| Chimp | panTro2 | chr22 | 24616234 | 24616384 | + | AC | CAGGTCCGCTTACCAGCTGGAGGAGGTGCCCAGGATGCCAGAGGCCTTTTCTGGGTCTTAGATGAGGAAGTCCGTGTAGAGGGCTCCAGTGACAGTGTGGTGCTCGAACGTCTGTGTGCTGCTTTCGAGAAGAAAGGAGCTGGGACTGAAG |
| Gorilla | gorGor1 | Supercontig_0000260 | 76289 | 76439 | - | AC | CAGGTCCGCTTACCAGCTGGAGGAGGTGCCCAGGATGCCAGAGGCCTTTTCTGGGTCTTGGATGAGGAAGTCCGTGTAGAGGGCTCCAGTGACAGTGTGGTGCTCGAGCGTCTGTGTGCTGCTTTCGAGAAGAAAGGAGCTGGGACTGAAG |
| Rhesus | rheMac2 | chr10 | 69662703 | 69662853 | + | AC | TAGGTCCGCTTACCAGCTGGAGGAGGTGCCCAGGATGCCAAAGGCCTTTTCTGGGTCTTGGATGAGGAAGTCCGTGTAGAGGGCTCCAGTGACAGTGTGGTGCTCGAGCGTCTGTGTGCTGCCTTCGAGAAGAAAGGAGCTGGGACTGAAG |
| Baboon | papHam1 | scaffold6803 | 27002 | 27152 | - | AC | TAGGTCCGCTTACCAGCTGGAGGAGGTGCCCAGGATGCCAAAGGCCTTTTCTGGGTCTTGGATGAGGAAGTCCGTGTAGAGGGCTCCAGTGACAGTGTGGTGCTCGAGCGTCTGTGTGCTGCCTTCGAGAAGAAAGGAGCTGGGACTGAAG |
| Marmoset | calJac1 | Contig15568 | 2782 | 2932 | - | GC | CAGGTCCGCTTACCAGCTGGAGGAGGTGCTCAGGATGCCAGAGGCCTTTTCTGGGTCTTGGATGAGGAAGTCCGAGTAGAGGGCTCCAGTGACAGTGTGGTGCTTGAGCGTCTGTGCACCGCCTTCGAGAAGAAAGAAGCGGGAACTGAAG |
| Tarsier | tarSyr1 | scaffold_26624 | 6626 | 6776 | + | AC | CAGGTCCGCCTACCAGCTGGAGAGGGTGCGGAAGATGCCAGGGGACTGTTCTGGGTCTTGGATGAGGAGGTCCGGGTAGAGGGCTCCAGCGACAGCACGGTGCTCGAGCGTCTGTTTGCGGCCTTTGAGAAAAAAGGTACTGAGGCCGAAG |
| Lemur | micMur1 | scaffold_949 | 265134 | 265284 | + | GC | CAGGTCCGCATGCCGGCTGGAGAAGGTGCTGGCGACGCACAGGGCCTTTTCTGGGTCCTGGACGAGGAGGTCCGGGTAGAGGGATCCAGTGACAACACGGTCCTCGAGCGTCTGTGTGCGGCCTTTGAGAAGAAAGGCGCTGGGGCCGAAG |
| Galago | otoGar1 | scaffold_102048.1-171972 | 127705 | 127855 | + | GC | CAGGTCCGCTTACCAGCTGGAGGAGGTACCGAGGATGCAAAGGGCCTTTTCTCTGTCCTGGATGAAGAGGTCCGAATGGAGGGTTCCAGTGACAGCACGATCCTGGAGCGCCTGTGTGCGGCCTTTGAGAAGAAAGGAGCTGGGGCTGAAG |
| Mouse | mm9 | chr5 | 113266771 | 113266924 | - | AC | CAGGTCCACTTACCAGCTGGAAGAGGTGCTGAGGATGCTGGGGGCCTCTTCTGGGTCTTAGATGAAGAAGTCCGGGTGCAAGGCTCCAGTGACAGCACTGTACTTGAGCGTCTGCGTGCAGCCTTTGAGAAGAAGAAGGAGGCTGGGGCTGAAG |
| Cow | bosTau4 | chr17 | 69027540 | 69027690 | + | TC | CAGGTGCGCCTGCCAGCCGGAGGAGGTGCCGAGGACTCCAGGGGCCTTTTCTGGATCTTGGACGAGGAGGTCCGGGTGGAGGGCTCCCAGGACAGCGTGGTGCTCGAGCGCCTCTGTGCTGCCTCTGAGAAGAAAGGAGCTGGAGCTGAAG |
| Dog | canFam2 | chr26 | 22631834 | 22631984 | + | TC | CAGGTCCGCTTACCAGCCGTTGGAGGGGCTGAGGATGCCAAGGGCCTTTTCTGGCTCTTGGATGAAGAGGTCCGGGTGGAGGGCTCCAGTGACAGCGTGGTGCTCGAACGTCTCTGTGCGGCCTTTGAGAAGAAAGGGGCTGAGGCCGGAG |
Alignment (splice site sequences are in lowercase)
Human agCAGGTCCGCTTACCAGCTGGAGGAGGTGCCCAGGATGCCAGAGGCCTTTTCTGGGTCTTAGATGAGGAAGTCCATGTA Chimp .c.........................................................................G.... Gorilla .c...........................................................G.............G.... Rhesus .cT.......................................A..................G.............G.... Baboon .cT.......................................A..................G.............G.... Marmoset gc.............................T.............................G.............GA... Tarsier .c.........C............AG.....GG.A........G..A..G...........G........G....GG... Lemur gc.........A.G..G.......A......TGGC..C..ACAG...............C.G..C.....G....GG... Galago gc...........................A..G.......A.AG..........CT...C.G.....A..G....GAA.G Mouse .c.......A.............A.......TG.......TG.G.....C.................A.......GG..G Cow tc.....G...C.G.....C............G....CT....G............A....G..C.....G....GG..G Dog tc.................C.TT.....G..TG.........AG............C....G.....A..G....GG..G Human GAGGGCTCCAGTGACAGTGTGGTGCTCGAGCGTCTGTGTGCTGCTTTCG---AGAAGAAAGGAGCTGGGACTGAAGgt Chimp .............................A...................---.......................... Gorilla .................................................---.......................... Rhesus ............................................C....---.......................... Baboon ............................................C....---.......................... Marmoset ..........................T...........CA.C..C....---.........A...G..A......... Tarsier ...........C.....CAC.................T...G..C..T.---....A.....TA...A.G.C...... Lemur .....A..........ACAC...C.................G..C..T.---..........C......G.C...... Galago .....T...........CAC.A.C..G.....C........G..C..T.---.................G........ Mouse C.A..............CACT..A..T.........C....A..C..T.AGA.......G.AG......G........ Cow .........CAG.....C..............C..C........C.CT.---................AG........ Dog .................C...........A.....C.....G..C..T.---..........G....A.G.C.G....
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47 | uc010gwc.1_6_14 | chr22:31285164 | + | AG | TG | (A1) shift; increase; inframe | alternative | OSBP2 | NP_110385.1 | NM_030758.3 | oxysterol-binding protein 2 | NAGNAG |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr22 | 31285164 | 31285221 | + | AG | CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAAT |
| Chimp | panTro2 | chr22 | 29753814 | 29753871 | + | TG | CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGTTCAGCAGACAAT |
| Gorilla | gorGor1 | Supercontig_0006706 | 22842 | 22899 | - | TG | CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAAT |
| Orangutan | ponAbe2 | chr22 | 25852814 | 25852871 | + | TG | CAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAAT |
| Rhesus | rheMac2 | chr10 | 74766152 | 74766209 | + | TG | CAGAAAAACTGAAGGTAGTACGGGGACAAGTTCTGTGGACTGGAGCTCAGCAGACAAT |
| Baboon | papHam1 | scaffold4807 | 35488 | 35545 | - | TG | CAGAAAAGCTGAAGGTAGCACGGGGACAAGTTCTGTGGACTGGAGCTCAGCAGACAAT |
| Marmoset | calJac1 | Contig7329 | 83119 | 83176 | + | TG | CAGAAAAGCTGAAGGTAGCAGTGGAACAAGTTCCGTGGACTGGAGCTCGACAGACAAT |
| Tarsier | tarSyr1 | scaffold_184461 | 1982 | 2039 | + | TG | CAGAAAAGCTGAAGGTGGAACTGGGACGGGCTCCGTGGACTGGACCTCGGCAGACAAT |
| Lemur | micMur1 | scaffold_1487 | 35712 | 35769 | + | TG | AAGAAAAGCCGAAGGTGGAACTGGGGCAGGCTCAGTGGACTGGACCTCATCAGACAAC |
| Mouse | mm9 | chr11 | 3615500 | 3615557 | - | TG | CAGAAAGCCTGAGAGTGGACCTGGGACCACCACTGTGGACTGGACCTCAGCAGATAAT |
| Cow | bosTau4 | chr17 | 73233734 | 73233785 | + | CA | CAGAAAAGCTGAGGCAGGGACTGCAGGCTCCGTGGAATGGACCGCAGACAAT |
| Dog | canFam2 | chr26 | 26954411 | 26954465 | + | TT | CAGAAAAGCAGAGGGTGGGACCACAGGCTCAGTGGACTGGACCTCATCAGACAAT |
Alignment (splice site sequences are in lowercase)
Human agCAGAAAAGCTGAAGGTAGCACCGGGACAAGTTCCGTGGACTGGAGCTCAGCAGACAATgt Chimp t..............................................T.............. Gorilla t............................................................. Orangutan t............................................................. Rhesus t........A..........T..G...........T.......................... Baboon t......................G...........T.......................... Marmoset t.....................GT..A.......................GA.......... Tarsier t.................G.A..T.....GG.C.............C...G........... Lemur t.A........C......G.A..T...G..G.C..A..........C....T.......C.c Mouse t.......GC....GA..G.AC.T.....C.CCA.T..........C.........T..... Cow ca............G.CAG.G..T.---..G.C........A....C.---........... Dog tt.........A..G...G.G...---...G.C..A..........C....T.........c
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48 | uc011aqc.1_2_7 | chr22:44285375 | - | AG | GG | (A3) shift; decrease; inframe | alternative | PNPLA5 | NP_001171146.1 | NM_001177675.1 | patatin-like phospholipase domain-containing protein 5 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr22 | 44285205 | 44285375 | - | AG | ACTGCCCCTCCACCATCACGGTGTCGCCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAACGTCTTCAACTTCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGCTCATATGTCTCATACCCCCCAGCCTCGAGGTAG |
| Chimp | panTro2 | chr22 | 42999183 | 42999353 | - | GG | ACTGCCCCTCCACCATCACGGTGTCACCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAACGTCTTCAACTCCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGCTCATATGTCTCATACCCCCCAGCCTCGAGGTAG |
| Gorilla | gorGor1 | Supercontig_0021919 | 2492 | 2662 | - | GG | ACTGTCCCTCCACCATCACGGTGTCGCCCTTCCGTGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAACGTCTTCAACTCCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGCTCATATGTCTCATACCCCCCAGCCTCGAGGTAG |
| Orangutan | ponAbe2 | chr22 | 39253817 | 39253987 | - | GG | ACTGCCCCTCCACCATCACGGTGTCGCCCCTCCATGGGACAGTGGATATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAACGCCTTCAACTCCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGTTCATGTGTCTCATACCCCCCAGGCTCGAGGTAG |
| Rhesus | rheMac2 | chr10 | 87891686 | 87891856 | - | GG | ACTGCCCCTCCACCATCACGGTGTCCCCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAATGCCTTCAACGCCAGCTTCCAAATCTCCACCAAGAACTTCTTCCTGGGGTTCGTAAGCCTCATACCCCCCAGCCTCGAGGTAG |
| Baboon | papHam1 | scaffold349 | 220423 | 220593 | + | GG | ACTGCCCCTCCACCATCACGGTGTCCCCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAATGCCTTCAACGCCAGCTTCCAAATCTCCACCAAGAACTTCTTCCTGGGGTTCATAAGCCTCATACCCCCCAGCCTCGAGGTAG |
| Marmoset | calJac1 | Contig2204 | 188458 | 188628 | - | GG | ACTGCCCCTTTACCATCACCGTGTCACCCTTCCACGGGACAGTGGACATTTGCCCCCAGAGCACCTCTGCCAACCTGCATGAGTTGAATGCCTTCAATGCCAGCTTCCAAATCTCCACCGAGAACTTCTTCCTGGGATTCATATGCCTTGTGCCCCCCAACCCTGAGGTAC |
| Galago | otoGar1 | scaffold_86734.1-260611 | 212950 | 213120 | + | GG | ACTGCCCCTCCACCATCACTGTGTCACCTTTCCATGGGACAGTAGACATCTGCCCCCAGAGCACCTCACCCAGCCTGCATGAGCTGAATGCCTTCAATGCCAGCTTCCAAATCTCCACCATGAACTTCTTCCTGGGGTTCATTTCCCTCATACCCCCCAGTCCTGAGGTAG |
| Mouse | mm9 | chr15 | 83950609 | 83950779 | - | CG | ATTGCCCCACCACCATTACCGTCTCTCCTTTCAACGGGACAGTGGACATCTGTCCCCAGAACATATCACATAGTCTTTTTGAGCTAACTGCCTTCAATGCCAGTTTCCAGATCTCTACCAGGAACTTCTTTAGGGGGCTCAAATCTGTGTTCCCCCCCAAGCCTGAGGTAG |
| Dog | canFam2 | chr10 | 24827768 | 24827938 | + | GG | ACTCGCCCTCCACAATCACCGTGTCCCCTTTCCATGGGACGGTGGACATCTGCCCCCAGAGCACCTCGGCCAACATACATGAGCTGAATGCCTTCAATGCCAGTCTCCAGATCTCCACCAAGAACTTCTTCCTGGGGTTCAGTTGCCTCATATCCCCCAACTCTGAGGTAG |
Alignment (splice site sequences are in lowercase)
Human agACTGCCCCTCCACCATCACGGTGTCGCCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGC Chimp g..........................A.................................................... Gorilla g.....T............................G............................................ Orangutan g..............................C................T............................... Rhesus g..........................C.................................................... Baboon g..........................C.................................................... Marmoset g..........TT........C.....A........C..............T.................TG......... Galago g....................T.....A..T..............A.......................A....G..... Mouse c..T......A.......T..C..C..T..T...A.C.................T.......A..TA..A.AT.GT..TT Dog g....CG........A.....C.....C..T...........G..........................GG.....A.A. Human ATGAGCTGAACGTCTTCAACTTCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGCTCATATGTCTCATACCCCCC Chimp .....................C.......................................................... Gorilla .....................C.......................................................... Orangutan ............C........C.....................................T....G............... Rhesus ..........T.C.......GC..................CA.................T..G..A.C............ Baboon ..........T.C.......GC..................CA.................T.....A.C............ Marmoset .....T....T.C......TGC..................C.................AT.......C..TG.G...... Galago ..........T.C......TGC..................CAT................T....T.CC............ Mouse T......A.CT.C......TGC...T.....G.....T..CAG.........TAG........A..C.G.GT.C...... Dog ..........T.C......TGC...TC....G........CA.................T...GT..C......T..... Human AGCCTCGAGGTAGgt Chimp ............... Gorilla ............... Orangutan ..G............ Rhesus ............... Baboon ............... Marmoset .A..CT......C.. Galago ..T.CT......... Mouse .AG.CT......... Dog .A.TCT........c
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49 | uc003bjv.2_10_10 | chr22:50637545 | + | AG | AA | (A9) intronization; frameshift | alternative | TRABD | Q9H4I3 | BI909982.1 | TraB domain containing |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chr22 | 50637545 | 50637557 | + | AG | AGAGAAAAACTGA |
| Chimp | panTro2 | chr22 | 49520410 | 49520422 | + | AA | AGAGAAAAACTGA |
| Gorilla | gorGor1 | Supercontig_0003489 | 59870 | 59882 | - | AA | AGAGAAAAACTGA |
| Orangutan | ponAbe2 | chr22 | 45866917 | 45866929 | + | AA | AGAGAAAAACTGA |
| Rhesus | rheMac2 | chr10 | 94203779 | 94203791 | + | AA | AGAGAAAAACTGA |
| Baboon | papHam1 | scaffold15085 | 28163 | 28175 | + | AA | AGAGAAAAACTGA |
| Marmoset | calJac1 | Contig5405 | 127284 | 127296 | + | AA | AGAGAAAAACTGA |
| Lemur | micMur1 | scaffold_19994 | 8643 | 8658 | + | AC | AGAAAAAACAAACTGA |
| Mouse | mm9 | chr15 | 88916989 | 88917004 | + | AA | AGAGAAAACAAACTGA |
Alignment (splice site sequences are in lowercase)
Human agAGAGAA---AAACTGA Chimp .a......---....... Gorilla .a......---....... Orangutan .a......---....... Rhesus .a......---....... Baboon .a......---....... Marmoset .a......---....... Lemur .c...A..AAC....... Mouse .a......AAC.......
Summary
| No | Exon ID | Position (hg19) | Dir | Human acceptor | Chimp acceptor | Category | Usage | Gene symbol | Protein accession | mRNA accession | Gene title | Note |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50 | uc011msf.1_2_7 | chrX:103040676 | + | AG | GG | (A3) shift; decrease; inframe | alternative | PLP1 | B4DI30 | AK295388.1 | proteolipid protein 1 | dbSNP:rs2233697 |
Orthologs
| Species | Assembly | Chromosome | Exon start | Exon end | Dir | Acceptor | Exon sequence |
|---|---|---|---|---|---|---|---|
| Human | hg19 | chrX | 103040676 | 103040697 | + | AG | ACTATGAGTATCTCATCAATGT |
| Chimp | panTro2 | chrX | 103431784 | 103431805 | + | GG | ACTATGAGTATCTCATCAATGT |
| Gorilla | gorGor1 | Supercontig_0092106 | 600 | 621 | - | GG | ACTATGAGTATCTCATCAATGT |
| Orangutan | ponAbe2 | chrX | 102739265 | 102739286 | + | GG | ACTATGAGTATCTCATCAATGT |
| Rhesus | rheMac2 | chrX | 102340100 | 102340121 | + | GG | ACTATGAGTATCTCATCAATGT |
| Baboon | papHam1 | scaffold17370 | 28997 | 29018 | - | GG | ACTATGAGTATCTCATCAATGT |
| Marmoset | calJac1 | Contig897 | 474886 | 474907 | + | GG | ACTATGAGTATCTCATCAATGT |
| Tarsier | tarSyr1 | scaffold_14674 | 15697 | 15718 | + | GG | ACTATGAGTATCTCATCAATGT |
| Lemur | micMur1 | scaffold_2402 | 148549 | 148570 | + | GG | ACTATGAATATCTCATCAATGT |
| Galago | otoGar1 | scaffold_118494.1-150617 | 48847 | 48868 | + | GG | ACTATGAATATCTCATCAATGT |
| Mouse | mm9 | chrX | 133365775 | 133365796 | + | GG | ACTATGAGTATCTCATTAATGT |
| Cow | bosTau4 | chrX | 34027990 | 34028011 | - | GG | ACTATGAGTATCTTATCAATGT |
| Dog | canFam2 | chrX | 80267708 | 80267729 | + | GG | ACTATGAGTATCTCATCAATGT |
Alignment (splice site sequences are in lowercase)
Human agACTATGAGTATCTCATCAATGTgt Chimp g......................... Gorilla g......................... Orangutan g......................... Rhesus g......................... Baboon g......................... Marmoset g......................... Tarsier g......................... Lemur g........A................ Galago g........A................ Mouse g.................T....... Cow g..............T.......... Dog g.........................