A C D E F G I L M S T U W

E

EC_DATA_TYPE - Static variable in class uk.ac.ed.inf.ec.EcDbWriter

the sql data type for ec numbers

EC_FIELD_NAME - Static variable in class uk.ac.ed.inf.ec.EcDbWriter

the name of the field to contain the ec number

EC_TABLE_NAME - Static variable in class uk.ac.ed.inf.ec.EcDbWriter

the name of the table for ec and ancestors

EcDbReader - Class in uk.ac.ed.inf.ec

Reads the full list of Enzyme Commission numbers from database

EcDbReader(DbManager, String) - Constructor for class uk.ac.ed.inf.ec.EcDbReader

EcDbReaderTest - Class in uk.ac.ed.inf.ec.test

Class

EcDbReaderTest() - Constructor for class uk.ac.ed.inf.ec.test.EcDbReaderTest

EcDbWriter - Class in uk.ac.ed.inf.ec

Given a database and a list of Enzyme commission numbers, writes a 2 columns table containing: in column 1: the Ec number, in column 2: all the ancestors of that EC number, including itself.

EcDbWriter(DbManager, String) - Constructor for class uk.ac.ed.inf.ec.EcDbWriter

Reads ec numbers from database and writes them and their ancestors to a new table

EcDbWriterTest - Class in uk.ac.ed.inf.ec.test

Class

EcDbWriterTest() - Constructor for class uk.ac.ed.inf.ec.test.EcDbWriterTest

EcFullXmlCreator - Class in uk.ac.ed.inf.ec

Creates a full XML hierarchical representation of Enzyme Commission numbers in Mulan format.

EcFullXmlCreator(String, String) - Constructor for class uk.ac.ed.inf.ec.EcFullXmlCreator

Get EC numbers from database

EcFullXmlCreator(TreeSet<String>) - Constructor for class uk.ac.ed.inf.ec.EcFullXmlCreator

Get EC numbers from list

EcFullXmlCreatorTest - Class in uk.ac.ed.inf.ec.test

Class

EcFullXmlCreatorTest() - Constructor for class uk.ac.ed.inf.ec.test.EcFullXmlCreatorTest

EcMulanXmlCreator - Class in uk.ac.ed.inf.ec

Creates a full XML hierarchical representation of Enzyme Commission numbers in Mulan format.

EcMulanXmlCreator(String, String) - Constructor for class uk.ac.ed.inf.ec.EcMulanXmlCreator

EcMulanXmlCreator(TreeSet<String>) - Constructor for class uk.ac.ed.inf.ec.EcMulanXmlCreator

EcMulanXmlCreatorTest - Class in uk.ac.ed.inf.ec.test

Class

EcMulanXmlCreatorTest() - Constructor for class uk.ac.ed.inf.ec.test.EcMulanXmlCreatorTest

EcNumber - Class in uk.ac.ed.inf.ec

A class representing an Enzyme Commission (EC) number.

EcNumber(String) - Constructor for class uk.ac.ed.inf.ec.EcNumber

EcNumberGenerator - Class in uk.ac.ed.inf.ec

Given a string such as 1.2.3.4 or 1.2.-.-.- checks if it is a valid Enzyme commission number and generates the Java EcNumber object (including its parent EC numbers)

EcNumberGenerator(String) - Constructor for class uk.ac.ed.inf.ec.EcNumberGenerator

EcNumberGeneratorTest - Class in uk.ac.ed.inf.ec.test

Class

EcNumberGeneratorTest() - Constructor for class uk.ac.ed.inf.ec.test.EcNumberGeneratorTest

EcNumberTest - Class in uk.ac.ed.inf.ec.test

Class

EcNumberTest() - Constructor for class uk.ac.ed.inf.ec.test.EcNumberTest