uk.ac.ed.inf.ec
Class EcFullXmlCreator

java.lang.Object
  uk.ac.ed.inf.ec.EcFullXmlCreator

Direct Known Subclasses:

EcMulanXmlCreator

public class EcFullXmlCreator
extends java.lang.Object

Creates a full XML hierarchical representation of Enzyme Commission numbers in Mulan format. Note: it creates also EC numbers that might not be present in the original list, but are ancestors of the given numbers. The ancestor of all EC numbers is the pseudo-EC numbers "-.-.-.-" (4 dashes)

Version:

4 Nov 2010

Author:

Luna De Ferrari luna.deferrari-at-ed.ac.uk

Constructor Summary

EcFullXmlCreator(java.lang.String dbConnPath, java.lang.String getEcQuery)
Get EC numbers from database

EcFullXmlCreator(java.util.TreeSet<java.lang.String> ecNumberStrings)
Get EC numbers from list

Method Summary

java.lang.String	createXmlString() Generate an XML representation of the Enzyme Commission number hierarchy in Mulan format.
EcDbReader	getDbReader()
java.util.TreeSet<EcNumber>	getEcNumbers()
java.lang.String	getXmlString() Adds a log to the xml file (timestamp, database and query to the data etc.)
static void	main(java.lang.String[] args)
void	saveToFile(java.lang.String filePath)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EcFullXmlCreator

public EcFullXmlCreator(java.lang.String dbConnPath,
                        java.lang.String getEcQuery)

Get EC numbers from database

Parameters:

dbConnPropsPath -

EcFullXmlCreator

public EcFullXmlCreator(java.util.TreeSet<java.lang.String> ecNumberStrings)

Get EC numbers from list

Parameters:

ecNumberStrings -

Method Detail

createXmlString

public java.lang.String createXmlString()

Generate an XML representation of the Enzyme Commission number hierarchy in Mulan format.

Returns:

an XML representation of the Enzyme Commission number hierarchy in Mulan format.

getDbReader

public EcDbReader getDbReader()

getEcNumbers

public java.util.TreeSet<EcNumber> getEcNumbers()

getXmlString

public java.lang.String getXmlString()

Adds a log to the xml file (timestamp, database and query to the data etc.)

Returns:

saveToFile

public void saveToFile(java.lang.String filePath)

main

public static void main(java.lang.String[] args)