A B C D E F G I K L M N P R S T U V W X

M

m_arff - Static variable in class test.weka.DataSetManagerTest

m_memoryAbundant - Variable in class uk.ac.ed.inf.enzml.mulan.MulanArff

if plenty of memory available, also load each instance in weka instances, otherwise only write them to file one by one

MACHINE_LEARNING_LOCAL_DB_PROPS - Static variable in class uk.ac.ed.inf.enzml.ProjectParameters

MACHINE_LEARNING_PROPS - Static variable in class uk.ac.ed.inf.enzml.ProjectParameters

MACHINE_LEARNING_REMOTE_DB_PROPS - Static variable in class uk.ac.ed.inf.enzml.ProjectParameters

main(String[]) - Static method in class test.AllArffTests

main(String[]) - Static method in class test.AllMulanArffTests

main(String[]) - Static method in class test.AllMulanLearningTests

main(String[]) - Static method in class test.AllMulanPredictionTests

main(String[]) - Static method in class test.AllMulanTests

main(String[]) - Static method in class test.AllPreliminaryTests

main(String[]) - Static method in class test.AllTests

main(String[]) - Static method in class test.AllTrainTestsTests

main(String[]) - Static method in class test.AllUtilsTests

main(String[]) - Static method in class test.dataharness.AllDataTests

main(String[]) - Static method in class test.mulan.predict.MulanEmitPredictions

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.attributesfilter.AttributesFilter

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.ExperimentTable

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.MulanCrossExperimenter

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.MulanSerializer

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.traintest.MulanTrain

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.traintest.TrainTestExperimenter

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.traintest.TrainTestExperimenterSerialized

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.learn.traintest.TrainTestFullRun

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.MulanArff

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.predict.MulanPredict

main(String[]) - Static method in class uk.ac.ed.inf.enzml.mulan.predict.MulanPredictWithTrainedModel

main(String[]) - Static method in class uk.ac.ed.inf.enzml.weka.Arff

main(String[]) - Static method in class uk.ac.ed.inf.enzml.weka.ArffPropsTableManager

Main for recreating table

memoryIsAbundant() - Method in class uk.ac.ed.inf.enzml.weka.Arff

MODELS_PATH - Static variable in class uk.ac.ed.inf.enzml.ProjectParameters

MULAN_DATABASE_NAME - Static variable in class uk.ac.ed.inf.enzml.mulan.database.MulanDbCreator

MulanArff - Class in uk.ac.ed.inf.enzml.mulan

Generates an Attribute Relation Format File (ARFF) in Mulan format (multiple class labels per instance).

MulanArff(String, String) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanArff

MulanArff(String, String, boolean) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanArff

MulanArffProperties - Class in uk.ac.ed.inf.enzml.mulan

Class

MulanArffProperties(String) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanArffProperties

MulanArffRecord - Class in uk.ac.ed.inf.enzml.mulan

Checks that an ARFF record read from the database contains valid parameters to read an ARFF file.

MulanArffRecord(int, String) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanArffRecord

MulanArffRecordTest - Class in test.mulan

Class

MulanArffRecordTest() - Constructor for class test.mulan.MulanArffRecordTest

MulanArffTest - Class in test.mulan

Class

MulanArffTest() - Constructor for class test.mulan.MulanArffTest

MulanAttributeFactory - Class in uk.ac.ed.inf.enzml.mulan

In the Mulan ARFF, the class attribute is not generated.

MulanAttributeFactory(MulanDataSetGenerator) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanAttributeFactory

MulanCrossEvaluator - Class in uk.ac.ed.inf.enzml.mulan.learn

Class created to execute cross-evaluations and extract individual evaluation results (not possible from the Mulan class Evaluator, because only averaged results are returned).

MulanCrossEvaluator(MulanCrossExperimenter, boolean) - Constructor for class uk.ac.ed.inf.enzml.mulan.learn.MulanCrossEvaluator

MulanCrossExperimenter - Class in uk.ac.ed.inf.enzml.mulan.learn

Using Mulan (multi-label machine learning), this class initialises and executes either Train-Test evaluation (if two different arff records are given) (calling MulanTrainTestEvaluator) or cross-evaluations (calling MulanCrossEvaluator) if only one arff record is given.

MulanCrossExperimenter(String, String, int, MulanLearner, String) - Constructor for class uk.ac.ed.inf.enzml.mulan.learn.MulanCrossExperimenter

public MulanCrossExperimenter(String resultsDbPropsFile, String arffRecordDbProps, MulanArffRecord trainArffRecord, MulanLearner learner, String resultsFolder) { m_trainArffRecord = trainArffRecord; this.initialise(resultsDbPropsFile, arffRecordDbProps, learner, resultsFolder); }

MulanDataSetDbLoader - Class in uk.ac.ed.inf.enzml.mulan

Loads data from database to a Mulan data factory

MulanDataSetDbLoader(MulanDataSetManager) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanDataSetDbLoader

MulanDataSetDbLoaderTest - Class in test.mulan

Class

MulanDataSetDbLoaderTest() - Constructor for class test.mulan.MulanDataSetDbLoaderTest

MulanDataSetGenerator - Class in uk.ac.ed.inf.enzml.mulan

Class

MulanDataSetGenerator(MulanDataSetManager, OneToManyMap<String, String>, OneToManyMap<String, String>) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanDataSetGenerator

MulanDataSetGeneratorTest - Class in test.mulan

Class

MulanDataSetGeneratorTest() - Constructor for class test.mulan.MulanDataSetGeneratorTest

MulanDataSetManager - Class in uk.ac.ed.inf.enzml.mulan

This class generates a data set (instances, attributes, classes) in Mulan style (for multi-label machine learning).

MulanDataSetManager(MulanArff) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanDataSetManager

MulanDataSetManagerTest - Class in test.mulan

Class

MulanDataSetManagerTest() - Constructor for class test.mulan.MulanDataSetManagerTest

MulanDataSetWriterTest - Class in test.mulan

Class

MulanDataSetWriterTest() - Constructor for class test.mulan.MulanDataSetWriterTest

MulanDbCreator - Class in uk.ac.ed.inf.enzml.mulan.database

Creates the table to store Mulan machine learning results.

MulanDbCreator(DbManager) - Constructor for class uk.ac.ed.inf.enzml.mulan.database.MulanDbCreator

MulanDbCreatorTest - Class in test.mulan.learn.database

Class

MulanDbCreatorTest() - Constructor for class test.mulan.learn.database.MulanDbCreatorTest

MulanDbManager - Class in uk.ac.ed.inf.enzml.mulan.database

The database manager controls the writing to database.

MulanDbManager(String) - Constructor for class uk.ac.ed.inf.enzml.mulan.database.MulanDbManager

The DbManager constructor creates DbCreator, DbWriter and DbReader objects and writes the necessary tables to database.

MulanDbManagerTest - Class in test.mulan.learn.database

Class

MulanDbManagerTest() - Constructor for class test.mulan.learn.database.MulanDbManagerTest

MulanDbReader - Class in uk.ac.ed.inf.enzml.mulan.database

Reads ARFF file path from database

MulanDbReader(DbManager) - Constructor for class uk.ac.ed.inf.enzml.mulan.database.MulanDbReader

MulanDbReaderTest - Class in test.mulan.learn.database

Class

MulanDbReaderTest() - Constructor for class test.mulan.learn.database.MulanDbReaderTest

MulanDbWriter - Class in uk.ac.ed.inf.enzml.mulan.database

Class

MulanDbWriter(DbManager) - Constructor for class uk.ac.ed.inf.enzml.mulan.database.MulanDbWriter

MulanDbWriterTest - Class in test.mulan.learn.database

Class

MulanDbWriterTest() - Constructor for class test.mulan.learn.database.MulanDbWriterTest

MulanEmitPredictions - Class in test.mulan.predict

Class

MulanEmitPredictions() - Constructor for class test.mulan.predict.MulanEmitPredictions

MulanInstancesFiller - Class in uk.ac.ed.inf.enzml.mulan

Class

MulanInstancesFiller(MulanDataSetGenerator) - Constructor for class uk.ac.ed.inf.enzml.mulan.MulanInstancesFiller

MulanInstancesFillerTest - Class in test.mulan

Class

MulanInstancesFillerTest() - Constructor for class test.mulan.MulanInstancesFillerTest

MulanLearner - Class in uk.ac.ed.inf.enzml.mulan.learn

Containing a Mulan learner and its name, that is: the name of the MultiLabelLearnerBase plus the name of the algorithm within

MulanLearner(String, String, MultiLabelLearnerBase) - Constructor for class uk.ac.ed.inf.enzml.mulan.learn.MulanLearner

MulanLearners - Class in uk.ac.ed.inf.enzml.mulan.learn

Class

MulanLearners() - Constructor for class uk.ac.ed.inf.enzml.mulan.learn.MulanLearners

MulanPredict - Class in uk.ac.ed.inf.enzml.mulan.predict

First trains on a dataset (training set) and then emits predictions for a (compatible unlabelled) dataset.

MulanPredict(int, int, String, String, MulanLearner) - Constructor for class uk.ac.ed.inf.enzml.mulan.predict.MulanPredict

MulanPredictTest - Class in test.mulan.predict

Train arff: inst1, inst2 etc.

MulanPredictTest() - Constructor for class test.mulan.predict.MulanPredictTest

MulanPredictWithTrainedModel - Class in uk.ac.ed.inf.enzml.mulan.predict

Predicts an unlabeled data set using a previously trained and serialized classifier.

MulanPredictWithTrainedModel(int, int, String, String, String, MulanLearner) - Constructor for class uk.ac.ed.inf.enzml.mulan.predict.MulanPredictWithTrainedModel

MulanSerializer - Class in uk.ac.ed.inf.enzml.mulan.learn

Takes an arff file and an algorithm.

MulanSerializer(MulanArffRecord, MulanLearner, String) - Constructor for class uk.ac.ed.inf.enzml.mulan.learn.MulanSerializer

MulanTrain - Class in uk.ac.ed.inf.enzml.mulan.learn.traintest

Give arff and xml file path, weka algorithm, cross evaluation fold and it emits learning results

MulanTrain() - Constructor for class uk.ac.ed.inf.enzml.mulan.learn.traintest.MulanTrain