uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZVU5
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZVX7
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZW95
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZWF5
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZZQ5
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZZQ8
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZZQ9
uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetGenerator. Generating instance: Q9ZZR0

%%%%%%%%%%%%%%%%%%%%%%%%
% End of log: 20101020_214339
%%%%%%%%%%%%%%%%%%%%%%%

The path: data/arff/swiss_kegg_agree_with_interproswissprot_kegg_ec_with_interpro_20101020_160859.xml could not be read.
The file /home/ldeferra/home_workspace/taweka2010/data/arff can be written: true
Now loading data. 2010-10-20 21:43:44 uk.ac.ed.inf.taweka.mulan.MulanDataSetDbLoader
Now creating instance-attribute map. 2010-10-20 21:43:44
java.io.FileNotFoundException: data/arff/swiss_kegg_agree_with_interproswissprot_kegg_ec_with_interpro_20101020_160859.xml (No such file or directory)
	at java.io.FileInputStream.open(Native Method)
	at java.io.FileInputStream.<init>(FileInputStream.java:106)
	at java.io.FileInputStream.<init>(FileInputStream.java:66)
	at java.io.FileReader.<init>(FileReader.java:41)
	at uk.ac.ed.inf.utils.FileUtils.fromFilePathToBufferedReader(FileUtils.java:433)
	at uk.ac.ed.inf.utils.FileUtils.getStringFromFile(FileUtils.java:536)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredArff.copyTrainXmlFile(AttributesFilteredArff.java:38)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredArff.generateAuxiliaryFiles(AttributesFilteredArff.java:32)
	at uk.ac.ed.inf.taweka.weka.Arff.generateAndWriteArffFile(Arff.java:90)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilter.createNewTestArff(AttributesFilter.java:79)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilter.main(AttributesFilter.java:148)
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
	at java.util.Arrays.copyOf(Arrays.java:2882)
	at java.lang.StringValue.from(StringValue.java:24)
	at java.lang.String.<init>(String.java:178)
	at com.mysql.jdbc.SingleByteCharsetConverter.toString(SingleByteCharsetConverter.java:330)
	at com.mysql.jdbc.ResultSetRow.getString(ResultSetRow.java:797)
	at com.mysql.jdbc.ByteArrayRow.getString(ByteArrayRow.java:72)
	at com.mysql.jdbc.ResultSetImpl.getStringInternal(ResultSetImpl.java:5700)
	at com.mysql.jdbc.ResultSetImpl.getString(ResultSetImpl.java:5577)
	at uk.ac.ed.inf.utils.database.DbReader.getColumnValues(DbReader.java:79)
	at uk.ac.ed.inf.utils.database.DbReader.queryResultsColumnToVector(DbReader.java:160)
	at uk.ac.ed.inf.utils.database.DbReader.getMap(DbReader.java:136)
	at uk.ac.ed.inf.taweka.weka.DataSetDbLoader.getMap(DataSetDbLoader.java:112)
	at uk.ac.ed.inf.taweka.weka.DataSetDbLoader.createAndloadDataSet(DataSetDbLoader.java:63)
	at uk.ac.ed.inf.taweka.weka.DataSetDbLoader.<init>(DataSetDbLoader.java:48)
	at uk.ac.ed.inf.taweka.mulan.MulanDataSetDbLoader.<init>(MulanDataSetDbLoader.java:28)
	at uk.ac.ed.inf.taweka.mulan.MulanDataSetManager.setDataSetDbLoader(MulanDataSetManager.java:53)
	at uk.ac.ed.inf.taweka.weka.DataSetManager.initialise(DataSetManager.java:120)
	at uk.ac.ed.inf.taweka.weka.DataSetManager.<init>(DataSetManager.java:60)
	at uk.ac.ed.inf.taweka.mulan.MulanDataSetManager.<init>(MulanDataSetManager.java:32)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredDataSetManager.<init>(AttributesFilteredDataSetManager.java:11)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredArff.getDataSetManager(AttributesFilteredArff.java:60)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredArff.setProperties(AttributesFilteredArff.java:90)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilteredArff.saveArffRecord(AttributesFilteredArff.java:70)
	at uk.ac.ed.inf.taweka.weka.Arff.generateAndWriteArffFile(Arff.java:93)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilter.createNewTestArff(AttributesFilter.java:79)
	at uk.ac.ed.inf.taweka.mulan.attributesfilter.AttributesFilter.main(AttributesFilter.java:148)

