A B C D E F G H I J K L M N O P Q R S T U V W X Y

S

SECOND - Static variable in class uk.ac.ed.inf.utils.TimeUtils

Set - Class in uk.ac.ed.inf.utils.setutils

A set and its subsets.

Set(String, TreeSet<String>, SupersetsManager) - Constructor for class uk.ac.ed.inf.utils.setutils.Set

Set(String, TreeSet<String>, SupersetsManager, TreeSet<Set>) - Constructor for class uk.ac.ed.inf.utils.setutils.Set

setAdded(int) - Method in class uk.ac.ed.inf.utils.diff.Difference

Sets the point as added.

setAttribute(String, String) - Method in class uk.ac.ed.inf.utils.webutils.simpledomparser.XmlNode

setChosenOption(String) - Method in class uk.ac.ed.inf.utils.guiutils.SimpleRadioButtonPanel

setCookie(String, String) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds a cookie to the requst

setCookies(Map) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds cookies to the request

setCookies(String[]) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds cookies to the request

setDeleted(int) - Method in class uk.ac.ed.inf.utils.diff.Difference

Sets the point as deleted.

setDiag(boolean) - Method in class edu.cornell.lassp.houle.RngPack.Ranlux

Turns diagnostic messages on and off.

setFromList(ArrayList<String>) - Static method in class uk.ac.ed.inf.utils.ListUtils

create a set (elements appear only once) from a list

setFromObjectsToString(TreeSet<Object>) - Static method in class uk.ac.ed.inf.utils.Utils

setInitialisationIsCorrect(boolean) - Method in interface uk.ac.ed.inf.utils.Initialisable

setInitialisationIsCorrect(boolean) - Method in class uk.ac.ed.inf.utils.Initialised

setIsPrimaryKey(boolean) - Method in class uk.ac.ed.inf.utils.database.TableColumn

Sets the column primary key status

setManager(Manager) - Method in class uk.ac.ed.inf.utils.database.Managed

setParameter(String, File) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds a file parameter to the request

setParameter(String, Object) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds a parameter to the request; if the parameter is a File, the file is uploaded, otherwise the string value of the parameter is passed in the request

setParameter(String, String) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds a string parameter to the request

setParameter(String, String, InputStream) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds a file parameter to the request

setParameters(Map) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds parameters to the request

setParameters(Object[]) - Method in class uk.ac.ed.inf.utils.webutils.ClientHttpRequestUtils

adds parameters to the request

setState(double, double) - Method in class cern.jet.random.Pareto

Sets the parameters.

setTagName(String) - Method in class uk.ac.ed.inf.utils.webutils.simpledomparser.XmlNode

SetTest - Class in test.setutils

Class

SetTest() - Constructor for class test.setutils.SetTest

setText(String) - Method in class uk.ac.ed.inf.utils.webutils.simpledomparser.XmlNode

setUp() - Method in class test.database.DbConnPropsTest

the database connection properties file for test (database = test)

setUp() - Method in class test.database.DbCreatorTest

setUp() - Method in class test.database.DbManagerTest

setUp() - Method in class test.database.DbReaderTest

setUp() - Method in class test.database.DbWriterTest

setUp() - Method in class test.database.SqlUtilsTest

setUp() - Method in class test.database.TableCreatorTest

setUp() - Method in class test.database.TableManagerTest

setUp() - Method in class test.database.TableReaderTest

setUp() - Method in class test.database.TableRowTest

setUp() - Method in class test.database.TableTest

setUp() - Method in class test.database.TableWriterTest

setUp() - Method in class test.FileUtilsTest

setUp() - Method in class test.NumberUtilsTest

setUp() - Method in class test.SimpleDOMParserTest

setUp() - Method in class test.WebUtilsTest

setUp() - Method in class test.XmlNodeTest

setUp() - Method in class test.XmlSearcherTest

setUp() - Method in class test.XmlUtilsTest

SetUtils - Class in uk.ac.ed.inf.utils

Class

SetUtils() - Constructor for class uk.ac.ed.inf.utils.SetUtils

similarElementExistsInTable(String, String, String, DbConn) - Static method in class uk.ac.ed.inf.utils.database.DbUtils

simpleDirectoryChooser() - Static method in class uk.ac.ed.inf.utils.guiutils.GuiUtils

Returns the directory chosen by the user in a file chooser window.

SimpleDOMParser - Class in uk.ac.ed.inf.utils.webutils.simpledomparser

SimpleDOMParser is a highly-simplified XML DOM parser.

SimpleDOMParser() - Constructor for class uk.ac.ed.inf.utils.webutils.simpledomparser.SimpleDOMParser

SimpleDOMParserTest - Class in test

Class

SimpleDOMParserTest() - Constructor for class test.SimpleDOMParserTest

simpleFileChooser() - Static method in class uk.ac.ed.inf.utils.guiutils.GuiUtils

Returns the file chosen by the user in a file chooser window.

simpleInputDialog(String, String) - Static method in class uk.ac.ed.inf.utils.guiutils.GuiUtils

Creates a simple input pop-up

simpleMessagePopUp(String) - Static method in class uk.ac.ed.inf.utils.guiutils.GuiUtils

Pop-up window with message (icon: information > "i")

SimpleRadioButtonPanel - Class in uk.ac.ed.inf.utils.guiutils

SimpleRadioButtonPanel(String[], String[]) - Constructor for class uk.ac.ed.inf.utils.guiutils.SimpleRadioButtonPanel

Generates a simple radio button popup

SINGLE_QUOTE_CHARACTER - Static variable in class uk.ac.ed.inf.utils.database.DbUtils

size() - Method in class uk.ac.ed.inf.utils.maputils.OneToManyMap

splitTextInLines(String) - Static method in class uk.ac.ed.inf.utils.RegExpUtils

I am splitting the String based on a regular expression which looks for carriage return (\r) or line feed (\n) or carriage return immediately followed by line feed.

SqlUtils - Class in uk.ac.ed.inf.utils.database

Class

SqlUtils() - Constructor for class uk.ac.ed.inf.utils.database.SqlUtils

SqlUtilsTest - Class in test.database

Class

SqlUtilsTest() - Constructor for class test.database.SqlUtilsTest

START_TIMESTAMP - Static variable in class uk.ac.ed.inf.utils.database.DbUtils

staticNextDouble(double, double) - Static method in class cern.jet.random.Pareto

Returns a random number from the distribution with the given scale = k, and shape = alpha.

StatUtils - Class in uk.ac.ed.inf.utils.stats

Utilities to print simple histograms, percent of frequency etc

StatUtils() - Constructor for class uk.ac.ed.inf.utils.stats.StatUtils

StatUtilsTest - Class in uk.ac.ed.inf.utils.stats.tests

Class

StatUtilsTest() - Constructor for class uk.ac.ed.inf.utils.stats.tests.StatUtilsTest

STRING - Static variable in class uk.ac.ed.inf.utils.database.SqlUtils

Basic data type: string (anything that is not an integer or a double...)

stringIsNullOrEmpty(String) - Static method in class uk.ac.ed.inf.utils.StringUtils

stringMatchesRegExp(String, String, boolean) - Static method in class uk.ac.ed.inf.utils.RegExpUtils

matches a string against a regular expression (gives true if there is at least a partial match)

stringToArrayOfArrays(String, String) - Static method in class uk.ac.ed.inf.utils.ArrayUtils

Reads a special-character-separated string (eg comma or tab separated) and creates an array of rows-columns.

StringUtils - Class in uk.ac.ed.inf.utils

Class

StringUtils() - Constructor for class uk.ac.ed.inf.utils.StringUtils

StringUtilsTest - Class in test

Class

StringUtilsTest() - Constructor for class test.StringUtilsTest

stripXmlHtmlTags(String) - Static method in class uk.ac.ed.inf.utils.RegExpUtils

Strips all tags from xml or html code

substituteMatchedString(String, String, String) - Static method in class uk.ac.ed.inf.utils.RegExpUtils

Substitute an old string with a new string if the old string matches the given regular expression

suite() - Static method in class test.AllDatabaseUtilsTests

suite() - Static method in class test.AllUtilsTests

suite() - Static method in class uk.ac.ed.inf.utils.stats.tests.AllStatsUtilsTests

SupersetsManager - Class in uk.ac.ed.inf.utils.setutils

A class to identify the unique supersets among sets of interpro signatures.

SupersetsManager(String, DbManager, String) - Constructor for class uk.ac.ed.inf.utils.setutils.SupersetsManager

SupersetsManager(TreeMap<String, String>, String) - Constructor for class uk.ac.ed.inf.utils.setutils.SupersetsManager

SupersetsManagerTest - Class in test.setutils

Class

SupersetsManagerTest() - Constructor for class test.setutils.SupersetsManagerTest

surroundWith(String, String) - Static method in class uk.ac.ed.inf.utils.database.SqlUtils

Adds a surrounding string (usually an apex or similar) as prefix and suffix of the given text.