uk.ac.ed.inf.utils.guiutils
Class CommandLineMenu

java.lang.Object
  uk.ac.ed.inf.utils.guiutils.CommandLineMenu

public class CommandLineMenu
extends java.lang.Object

Stores the options for a command line program.

Version:

14 Dec 2007

Author:

Luna De Ferrari luna.deferrari-at-ed.ac.uk

Constructor Summary

CommandLineMenu(java.lang.String name, java.lang.String programDescription, java.util.ArrayList<CommandOption> options, java.lang.String exampleCommand, java.lang.String authors)

Method Summary

java.lang.String

toString() "-n The file containing the network e.g.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CommandLineMenu

public CommandLineMenu(java.lang.String name,
                       java.lang.String programDescription,
                       java.util.ArrayList<CommandOption> options,
                       java.lang.String exampleCommand,
                       java.lang.String authors)

Method Detail

toString

public java.lang.String toString()

"-n The file containing the network e.g. in sif format (any Cytoscape format is valid http://www.cytoscape.org/)" + "\n" +"-o File containing the node names to act as origin for the path search (one per line)" + "\n" +"-t File containing the node names to act as targets for the path search (one per line)" + "\n" + "-r The path and name of the report file to be created" + "\n" +"-s e.g. \\s for space \\t for tab or , (comma). Default is tab separated." + "\n" +"-m method (algorithm) Either 0 = single shortest path (directed and undirected) or 1 = PESCA multi shortest path (all undirected shortest paths). Default is 0." + "\n" +"-a (optional) The directory containing the .NA (node attributes) .EA (edge attributes) Cytoscape files." + "\n" + "-h > gets this help."+ "\n" +

Overrides:

toString in class java.lang.Object