uk.ac.ed.inf.utils.setutils
Class SupersetsManager

java.lang.Object
  uk.ac.ed.inf.utils.setutils.SupersetsManager

public class SupersetsManager
extends java.lang.Object

A class to identify the unique supersets among sets of interpro signatures. A set is a subset of a given superset if all its elements belong to the superset. For example: a-b, or a-c, or b-d are subsets of a-b-c-d, but a-e is not. A set is always a subset of itself. Beware not a very generic class (null are represented as '-1'), if -1 has a meaning in your data, modify the class.

Version:

16 Mar 2011

Author:

Luna De Ferrari luna.deferrari-at-ed.ac.uk

Field Summary

static boolean

m_debug

Constructor Summary

SupersetsManager(java.lang.String sqlQuery, DbManager dbManager, java.lang.String separator)

SupersetsManager(java.util.TreeMap<java.lang.String,java.lang.String> setsIdsElements, java.lang.String separator)

Method Summary

java.util.TreeSet<Set>	createSupersets()
void	generateSupersets()
java.lang.String	getSeparator()
java.util.TreeSet<Set>	getSets()
java.util.TreeSet<Set>	getSupersets()
java.lang.String	getSupersetsCSV() Get a comma separated list of [superset, subset] couples.
OneToManyMap	getSupersetsIds()
java.lang.String	getSupersetsIdsCSV() Get a comma separated list of [superset id, subset id] couples.
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

m_debug

public static final boolean m_debug

See Also:

Constant Field Values

Constructor Detail

SupersetsManager

public SupersetsManager(java.lang.String sqlQuery,
                        DbManager dbManager,
                        java.lang.String separator)

Parameters:

sqlQuery - to get the id + string of set elements divided by the separator

dbConnectionPath -

separator -

SupersetsManager

public SupersetsManager(java.util.TreeMap<java.lang.String,java.lang.String> setsIdsElements,
                        java.lang.String separator)

Parameters:

sqlQuery - to get the id + string of set elements divided by the separator

dbConnectionPath -

separator -

Method Detail

createSupersets

public java.util.TreeSet<Set> createSupersets()

generateSupersets

public void generateSupersets()

getSeparator

public java.lang.String getSeparator()

getSets

public java.util.TreeSet<Set> getSets()

getSupersets

public java.util.TreeSet<Set> getSupersets()

getSupersetsCSV

public java.lang.String getSupersetsCSV()

Get a comma separated list of [superset, subset] couples.

Returns:

a comma separated list of [superset, subset] couples.

getSupersetsIds

public OneToManyMap getSupersetsIds()

getSupersetsIdsCSV

public java.lang.String getSupersetsIdsCSV()

Get a comma separated list of [superset id, subset id] couples.

Returns:

a comma separated list of [superset id, subset id] couples.

main

public static void main(java.lang.String[] args)