{"text_format":"3","workbook":"xls","n_sheets":10,"sheets":["B+R+ & B+R-","Abf1","Ace2","Cin5","Fkh1","Fkh2","Rap1","Swi4","Swi5","Swi6"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"B+R+ & B+R-","index":0,"n_rows":1329,"n_cols":6,"rows_kept":1329,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Abf1: 144"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL023C","PMT2                      ","mannosyltransferase                                                                                                                                     ",4,-0.666868,2.12024]
["YAL041W","CDC24                     ","GTP/GDP exchange factor for CDC42P                                                                                                                     ",0,0.660621,2.67648]
["YAL042W","ERV46                     ","component of copii vesicles involved in transport between the ER and golgi complex                                                                     ",1,0.751053,3.58044]
["YAL043C","PTA1                      ","pre-tRNA processing protein / PF I subunit                                                                                                              ",3,0.712665,2.70153]
["YAL053W","YAL053W                   ","strong similarity to hypothetical proteins YOR365c,YGL139w,YPL221w                                                                                 ",4,-0.634983,1.88944]
["YAL054C","ACS1                      ","acetyl-CoA synthetase                                                                                                                                   ",6,-0.683474,1.91426]
["YBL039C","URA7                      ","CTP synthase 1                                                                                                                                          ",4,0.680948,2.23237]
["YBL079W","NUP170                    ","nuclear pore protein                                                                                                                                  ",1,0.566538,1.78965]
["YBR029C","CDS1                      ","CDP-diacylglycerol synthase                                                                                                                             ",3,0.644365,2.09698]
["YBR030W","YBR030W                   ","weak similarity to,regulatory protein MSR1P                                                                                                        ",2,0.56228,1.6614]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",5,-0.676588,2.03289]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",1,0.790819,4.22974]
["YBR109C","CMD1                      ","calmodulin                                                                                                                                              ",2,-0.587292,1.81916]
["YBR129C","OPY1                      ","pheromone resistant yeast 1                                                                                                                             ",2,0.566373,1.68628]
["YCL005W","YCL005W                   ","strong similarity to Saccharomyces pastorianus hypothetical protein LgYCL005w                                                                        ",3,0.692719,2.50554]
["YCL011C","GBP2                      ","potential telomere-associated protein                                                                                                                   ",6,0.63567,1.6147]
["YCL031C","RRP7                      ","involved in pre-rRNA processing and ribosome assembly                                                                                                   ",4,0.697365,2.37223]
["YCR003W","MRPL32                    ","ribosomal protein YmL32, mitochondrial                                                                                                              ",6,-0.647482,1.68338]
["YCR082W","YCR082W                   ","weak similarity to RBK1P                                                                                                                             ",8,-0.812643,2.57195]
["YDL010W","YDL010W                   ","similarity to hypothetical protein YBR014c and glutaredoxins                                                                                         ",3,-0.644907,2.10111]
["YDL035C","GPR1                      ","G-protein coupled receptor                                                                                                                              ",1,-0.558626,1.73857]
["YDL116W","NUP84                     ","nuclear pore protein                                                                                                                                   ",3,0.596824,1.76635]
["YDL189W","YDL189W                   ","weak similarity to 'KIAA1002'; H. sapiens                                                                                                            ",8,-0.692685,1.61974]
["YDL193W","YDL193W                   ","similarity to N.crassa hypothetical 32 kDa protein                                                                                                   ",6,-0.673545,1.84704]
["YDL208W","NHP2                      ","nucleolar rRNA processing protein                                                                                                                       ",3,0.822702,4.26482]
["YDR130C","FIN1                      ","weak similarity to sea urchin myosin heavy chain                                                                                                        ",0,0.52432,1.61756]
["YDR195W","REF2                      ","RNA 3'-end formation protein                                                                                                                            ",5,0.616349,1.6389]
["YDR233C","YDR233C                   ","similarity to hypothetical protein YDL204w                                                                                                           ",6,-0.754428,2.49712]
["YDR234W","LYS4                      ","homoaconitase                                                                                                                                           ",3,0.591152,1.7307]
["YDR280W","RRP45                     ","rRNA processing protein                                                                                                                                ",8,-0.898212,3.964]
["YDR296W","MHR1                      ","Involved in mitochondrial homologous DNA recombination                                                                                                  ",0,0.522932,1.60921]
["YDR312W","SSF2                      ","protein with a potential role in mating                                                                                                                 ",1,0.551848,1.6959]
["YDR326C","YDR326C                   ","strong similarity to YHR080c, similarity to YFL042c and YLR072w                                                                                    ",1,0.587854,1.93457]
["YDR361C","BCP1                      ","similarity to hypothetical protein S. pombe                                                                                                             ",1,0.794981,4.30737]
["YDR384C","YDR384C                   ","strong similarity to Y.lipolytica GPR1 gene                                                                                                          ",6,-0.75788,2.53123]
["YDR404C","RPB7                      ","DNA-directed RNA polymerase II, 19 KD subunit                                                                                                         ",3,0.724703,2.82924]
["YDR456W","NHX1                      ","NA+-H+ antiporter                                                                                                                                       ",2,-0.553195,1.60742]
["YDR463W","STP1                      ","pre-tRNA splicing protein, transcription factor                                                                                                       ",3,0.807987,3.98814]
["YEL017W","YEL017W                   ","hypothetical protein                                                                                                                                 ",6,-0.760001,2.55252]
["YEL037C","RAD23                     ","nucleotide excision repair protein (ubiquitin-like protein)                                                                                            ",1,0.716627,3.124]
["YFL048C","EMP47                     ","Golgi membrane protein                                                                                                                                 ",8,-0.715846,1.76013]
["YGL222C","EDC1                      ","weak similarity to EDC2                                                                                                                                 ",0,0.589161,2.05536]
["YGR056W","RSC1                      ","member of RSC complex, which remodels the structure of chromatin                                                                                      ",1,0.557545,1.7317]
["YGR119C","NUP57                     ","nuclear pore protein                                                                                                                                   ",1,0.734482,3.35047]
["YGR128C","YGR128C                   ","hypothetical protein                                                                                                                                 ",1,0.702341,2.9567]
["YGR129W","SYF2                      ","synthetic lethal with CDC40                                                                                                                             ",2,0.56217,1.66074]
["YGR183C","QCR9                      ","ubiquinol--cytochrome-c reductase subunit 9                                                                                                             ",1,-0.706425,3.00336]
["YGR253C","PUP2                      ","20S proteasome subunit(alpha5)                                                                                                                          ",8,-0.693201,1.62271]
["YGR268C","YGR268C                   ","weak similarity to S.pombe hypothetical protein SPAC17A5                                                                                             ",0,-0.570916,1.922]
["YGR270W","YTA7                      ","26S proteasome subunit                                                                                                                                  ",2,-0.641412,2.21456]
["YHR051W","COX6                      ","cytochrome-c oxidase subunit VI                                                                                                                         ",1,-0.54804,1.67236]
["YHR077C","NMD2                      ","nonsense-mediated mRNA decay protein 2                                                                                                                  ",4,0.691532,2.32135]
["YHR078W","YHR078W                   ","hypothetical protein                                                                                                                                 ",7,0.790555,2.61831]
["YHR115C","YHR115C                   ","strong similarity to hypothetical protein YNL116w                                                                                                    ",6,-0.640554,1.64271]
["YHR116W","YHR116W                   ","weak similarity to TRCDSEMBLNEW:AE003592_6 CG4186 D. melanogaster                                                                                    ",6,-0.758249,2.53491]
["YHR162W","YHR162W                   ","strong similarity to hypothetical protein YGR243w                                                                                                    ",6,-0.77677,2.7302]
["YIL037C","PRM2                      ","weak similarity to C. elegans F26G1.6 protease                                                                                                          ",0,-0.715596,3.29998]
["YIL135C","YIL135C                   ","similarity to Ymk1p                                                                                                                                  ",6,-0.707264,2.08791]
["YIL138C","TPM2                      ","tropomyosin, isoform 2                                                                                                                                ",0,0.674978,2.82467]
["YIR023W","DAL81                     ","transcriptional activator for allantoin and GABA catabolic genes                                                                                       ",2,0.548883,1.58237]
["YJL008C","CCT8                      ","component of chaperonin-containing T-complex                                                                                                            ",1,0.584487,1.91094]
["YJL111W","CCT7                      ","component of chaperonin-containing T-complex                                                                                                            ",7,-0.668013,1.64911]
["YJL174W","KRE9                      ","cell wall synthesis protein                                                                                                                             ",6,-0.766511,2.61946]
["YJL183W","MNN11                     ","related to MNN10P, and in a complex containing other MNN gene products                                                                               ",1,0.709163,3.03515]
["YJL201W","ECM25                     ","involved in cell wall biogenesis and architecture                                                                                                      ",4,-0.678171,2.20971]
["YJR063W","RPA12                     ","DNA-directed RNA polymerase I, 13.7 KD subunit                                                                                                       ",3,0.7211,2.79022]
["YJR093C","FIP1                      ","component of pre-mRNA polyadenylation factor PF I                                                                                                       ",1,0.685809,2.77668]
["YJR127C","ZMS1                      ","transcription factor with similarity to regulatory protein ARD1P                                                                                        ",2,-0.688751,2.63868]
["YKL004W","AUR1                      ","aureobasidin-resistance protein                                                                                                                         ",1,0.837715,5.25059]
["YKL005C","YKL005C                   ","weak similarity to YKR029c and D.melanogaster transcription elongation factor DmS-II                                                                 ",4,-0.666702,2.11896]
["YKL007W","CAP1                      ","F-actin capping protein alpha subunit                                                                                                                   ",4,-0.619477,1.78737]
["YKL015W","PUT3                      ","positive activator of the proline utilisation pathway                                                                                                   ",2,0.693551,2.6868]
["YKL028W","TFA1                      ","TFIIE subunit (transcription initiation factor), 66 kD                                                                                                ",8,-0.678375,1.53998]
["YKL029C","MAE1                      ","malic enzyme                                                                                                                                            ",1,0.741688,3.44796]
["YKL078W","DHR2                      ","RNA helicase, involved in ribosomal RNA maturation                                                                                                    ",1,0.824831,4.93413]
["YKL143W","LTV1                      ","low-temperature viability protein                                                                                                                       ",1,0.803279,4.46869]
["YKL167C","MRP49                     ","ribosomal protein, mitochondrial                                                                                                                     ",6,-0.7372,2.33611]
["YKL172W","EBP2                      ","required for pre-rRNA processing and ribosomal subunit assembly                                                                                         ",2,0.706236,2.81925]
["YKR030W","YKR030W                   ","weak similarity to NADH dehydrogenases                                                                                                               ",8,-0.788956,2.32858]
["YKR059W","TIF1                      ","translation initiation factor 4A                                                                                                                        ",2,0.789812,3.94774]
["YKR081C","YKR081C                   ","strong similarity to hypothetical protein S. pombe                                                                                                   ",3,0.682782,2.41444]
["YLL033W","YLL033W                   ","hypothetical protein                                                                                                                                 ",1,0.72492,3.22663]
["YLL034C","YLL034C                   ","similarity to mammalian valosin                                                                                                                      ",1,0.660799,2.52854]
["YLR055C","SPT8                      ","transcriptional adaptor or co-activator                                                                                                                 ",3,0.665282,2.2634]
["YLR056W","ERG3                      ","C-5 sterol desaturase                                                                                                                                   ",1,0.817751,4.77316]
["YLR222C","CST29                     ","similarity to DIP2P                                                                                                                                    ",2,0.754948,3.41291]
["YLR229C","CDC42                     ","GTP-binding protein of RAS superfamily                                                                                                                 ",6,-0.708769,2.09955]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",7,0.715418,1.95585]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",1,0.661714,2.53715]
["YML012W","ERV25                     ","component of the COPII-coated vesicles, 25 Kda                                                                                                       ",4,-0.713665,2.52197]
["YML081W","YML081W                   ","strong similarity to ZMS1 protein                                                                                                                    ",1,0.76062,3.72304]
["YMR061W","RNA14                     ","component of pre-mRNA 3'-end processing factor CF I                                                                                                    ",7,0.757297,2.29117]
["YMR092C","AIP1                      ","actin cytoskeleton component                                                                                                                            ",2,-0.61492,2.01083]
["YMR093W","YMR093W                   ","weak similarity to PWP2P                                                                                                                             ",1,0.819734,4.81738]
["YMR129W","POM152                    ","nuclear pore membrane glycoprotein                                                                                                                    ",1,0.577355,1.86182]
["YMR197C","VTI1                      ","v-SNARE: involved in Golgi retrograde protein traffic                                                                                                   ",6,-0.754922,2.50197]
["YMR198W","CIK1                      ","spindle pole body associated protein                                                                                                                    ",2,0.550789,1.5934]
["YMR260C","TIF11                     ","translation initiation factor eIF1a                                                                                                                    ",8,-0.753004,2.02094]
["YMR296C","LCB1                      ","serine C-palmitoyltransferase subunit                                                                                                                   ",2,-0.671603,2.47501]
["YMR297W","PRC1                      ","carboxypeptidase y, serine-type protease                                                                                                              ",4,-0.643132,1.94562]
["YNL036W","NCE103                    ","involved in non-classical protein export pathway                                                                                                      ",8,-0.81544,2.60335]
["YNL037C","IDH1                      ","isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial                                                                                              ",8,-0.78168,2.26096]
["YNL057W","YNL057W                   ","questionable ORF                                                                                                                                     ",3,0.713915,2.71444]
["YNL059C","ARP5                      ","Actin-related protein                                                                                                                                   ",3,0.732139,2.91206]
["YNL085W","MKT1                      ","required for propagation of M2 dsRNA satellite of L-A virus                                                                                             ",6,0.771063,2.66777]
["YNL116W","YNL116W                   ","weak similarity to RING zinc finger protein from Gallus gallus                                                                                       ",1,0.635577,2.30358]
["YNL118C","DCP2                      ","suppressor protein of a yeast pet mutant                                                                                                                ",1,0.756276,3.65733]
["YNL119W","YNL119W                   ","weak similarity to M.jannaschii hypothetical protein MJ1257                                                                                          ",6,-0.647363,1.68267]
["YNL149C","YNL149C                   ","weak similarity to S.pombe hypothetical protein                                                                                                      ",3,0.574015,1.62729]
["YNL189W","SRP1                      ","karyopherin-alpha or importin                                                                                                                           ",1,0.570506,1.8158]
["YNL212W","VID27                     ","weak similarity to C.cardunculus cypro4 protein                                                                                                        ",1,0.542808,1.64051]
["YNL244C","SUI1                      ","translation initiation factor 3 (eIF3)                                                                                                                  ",1,0.697345,2.90083]
["YNL255C","GIS2                      ","strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein                                                ",3,0.602586,1.80332]
["YNL287W","SEC21                     ","coatomer complex gamma chain (gamma-COP) of secretory pathway vesicles                                                                                 ",1,0.550647,1.68845]
["YNL306W","MRPS18                    ","ribosomal protein of the small subunit, mitochondrial                                                                                               ",6,-0.794281,2.9359]
["YNL307C","MCK1                      ","ser/thr/tyr protein kinase                                                                                                                              ",1,0.673616,2.65231]
["YNL312W","RFA2                      ","DNA replication factor A, 36 kDa subunit                                                                                                              ",7,0.780304,2.51048]
["YNL313C","YNL313C                   ","similarity to C.elegans hypothetical protein                                                                                                         ",0,0.519611,1.58937]
["YNL322C","KRE1                      ","cell wall protein                                                                                                                                       ",4,-0.659921,2.06735]
["YNR037C","RSM19                     ","strong similarity to Mycoplasma ribosomal protein S19                                                                                                  ",4,-0.632801,1.87471]
["YNR038W","DBP6                      ","RNA helicase required for 60S ribosomal subunit assembly                                                                                                ",1,0.730556,3.29889]
["YNR046W","YNR046W                   ","strong similarity to S.pombe hypothetical protein SPAC31A2.02                                                                                        ",6,-0.834361,3.50891]
["YOL036W","YOL036W                   ","weak similarity to YMR317w                                                                                                                           ",6,-0.85401,3.86123]
["YOL077C","BRX1                      ","strong similarity to C.elegans K12H4.3 protein                                                                                                          ",1,0.651012,2.43845]
["YOR045W","TOM6                      ","mitochondrial outer membrane import receptor subunit, 6 kD                                                                                            ",6,-0.887473,4.63077]
["YOR056C","YOR056C                   ","weak similarity to human phosphorylation regulatory protein HP-10                                                                                    ",2,0.733497,3.13298]
["YOR057W","SGT1                      ","suppressor of G2 allele of SKP1                                                                                                                         ",3,0.683466,2.42058]
["YOR116C","RPO31                     ","DNA-directed RNA polymerase III, 160 KD subunit                                                                                                      ",1,0.675583,2.67193]
["YOR117W","RPT5                      ","26S proteasome regulatory subunit                                                                                                                       ",5,0.644245,1.80957]
["YOR205C","YOR205C                   ","hypothetical protein                                                                                                                                 ",6,-0.841278,3.62641]
["YOR206W","NOC2                      ","crucial for intranuclear movement of ribosomal precursor particles                                                                                      ",1,0.742585,3.46036]
["YOR261C","RPN8                      ","26S proteasome regulatory subunit                                                                                                                       ",8,-0.761868,2.09101]
["YOR309C","YOR309C                   ","questionable ORF                                                                                                                                     ",1,0.81407,4.69272]
["YOR310C","NOP58                     ","required for pre-18S rRNA processing                                                                                                                   ",3,0.820603,4.22352]
["YPL012W","YPL012W                   ","hypothetical protein                                                                                                                                 ",2,0.665801,2.42235]
["YPL013C","YPL013C                   ","strong similarity to N.crassa mitochondrial ribosomal protein S24                                                                                    ",2,-0.563089,1.66629]
["YPL036W","PMA2                      ","H+-transporting P-type ATPase, minor isoform, plasma membrane                                                                                         ",3,0.770043,3.38939]
["YPL159C","YPL159C                   ","weak similarity to YPR151c                                                                                                                           ",5,-0.664404,1.94521]
["YPL242C","IQG1                      ","involved in cytokinesis, has similarity to mammalian IQGAP proteins                                                                                   ",3,0.70341,2.6083]
["YPR018W","RLF2                      ","chromatin assembly complex, subunit p90                                                                                                               ",2,-0.711834,2.88028]
["YPR104C","FHL1                      ","transcriptional activator of the forkhead/hnf3 family                                                                                                   ",0,0.703313,3.14657]
["YPR128C","YPR128C                   ","similarity to carrier protein FLX1                                                                                                                   ",6,-0.878584,4.39999]
["YPR129W","SCD6                      ","suppressor of clathrin deficiency                                                                                                                       ",1,0.724014,3.21522]
["YPR187W","RPO26                     ","DNA-directed RNA polymerase I, II, III 18 KD subunit                                                                                                 ",8,-0.902004,4.05876]
[]
["The number of non-regulatory targets of Abf1: 103"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL007C","SLA1                      ","cytoskeleton assembly control protein                                                                                                                   ",6,0.591336,1.38264]
["YBL038W","MRPL16                    ","ribosomal protein of the large subunit, mitochondrial                                                                                               ",3,0.526804,1.372]
["YBL080C","PET112                    ","required to maintain rho+ mitochondrial DNA                                                                                                           ",5,-0.567212,1.3779]
["YBR011C","IPP1                      ","inorganic pyrophosphatase, cytoplasmic                                                                                                                ",4,-0.520462,1.25437]
["YBR080C","SEC18                     ","vesicular-fusion protein, functional homolog of NSF                                                                                                  ",1,0.375024,0.853356]
["YBR101C","YBR101C                   ","weak similarity to S.pombe hypothetical protein SPBC3B9.01                                                                                           ",5,0.498108,1.07679]
["YBR110W","ALG1                      ","beta-mannosyltransferase                                                                                                                                ",1,0.520397,1.5102]
["YBR211C","AME1                      ","actin related protein                                                                                                                                   ",2,0.521935,1.43375]
["YBR212W","NGR1                      ","glucose-repressible RNA-binding protein                                                                                                                 ",4,0.44757,0.957978]
["YBR283C","SSH1                      ","involved in co-translational pathway of protein transport                                                                                               ",5,0.546775,1.28175]
["YBR284W","YBR284W                   ","similarity to AMP deaminase                                                                                                                          ",2,-0.393559,0.874085]
["YCL004W","PGS1                      ","phosphatidylglycerophosphate synthase                                                                                                                   ",7,-0.510923,0.955954]
["YCL016C","DCC1                      ","part of an alternative RFC complex                                                                                                                      ",5,-0.348352,0.601597]
["YCR001W","YCR001W                   ","weak similarity to chloride channel proteins                                                                                                         ",3,0.453823,1.04603]
["YCR053W","THR4                      ","threonine synthase (o-p-homoserine p-lyase)                                                                                                             ",3,0.521862,1.34751]
["YDL012C","YDL012C                   ","strong similarity to hypothetical protein YBR016w and YDR210w                                                                                        ",4,0.475694,1.06472]
["YDL032W","YDL032W                   ","questionable ORF                                                                                                                                     ",2,0.428822,1.00729]
["YDL105W","QRI2                      ","weak similarity to proteins of unknown function                                                                                                         ",5,0.509103,1.12041]
["YDL106C","PHO2                      ","homeodomain protein                                                                                                                                     ",4,0.394641,0.778939]
["YDL122W","UBP1                      ","ubiquitin-specific protease                                                                                                                             ",1,0.5066,1.43459]
["YDL145C","COP1                      ","coatomer complex alpha chain of secretory pathway vesicles                                                                                              ",0,0.484987,1.39472]
["YDL159W","STE7                      ","ser/thr/tyr protein kinase of MAP kinase kinase family                                                                                                  ",6,-0.499604,1.00133]
["YDL160C","DHH1                      ","putative RNA helicase of the DEAD box family                                                                                                            ",0,-0.465739,1.29535]
["YDL190C","UFD2                      ","ubiquitin fusion degradation protein                                                                                                                    ",6,-0.492364,0.975661]
["YDL209C","YDL209C                   ","similarity to hypothetical S. pombe protein                                                                                                          ",1,0.327646,0.692367]
["YDR194C","MSS116                    ","RNA helicase of the DEAD box family, mitochondrial                                                                                                  ",8,-0.515797,0.882293]
["YDR283C","GCN2                      ","ser/thr protein kinase                                                                                                                                  ",0,-0.313735,0.680737]
["YDR295C","PLO2                      ","weak similarity to USO1P, YPR179c and fruit fly tropomyosin                                                                                           ",6,-0.543547,1.16992]
["YDR327W","YDR327W                   ","questionable ORF                                                                                                                                     ",8,-0.607659,1.20711]
["YDR329C","PEX3                      ","peroxisomal assembly protein - peroxin                                                                                                                  ",0,0.343126,0.779834]
["YDR330W","YDR330W                   ","similarity to hypothetical S. pombe protein                                                                                                          ",1,-0.349361,0.76355]
["YDR339C","YDR339C                   ","weak similarity to hypothetical protein YOR004w                                                                                                      ",7,-0.449026,0.765804]
["YDR340W","YDR340W                   ","questionable ORF                                                                                                                                     ",4,0.359273,0.673016]
["YDR385W","EFT2                      ","translation elongation factor eEF2                                                                                                                      ",5,0.435187,0.852797]
["YDR405W","MRP20                     ","ribosomal protein of the large subunit, mitochondrial                                                                                                ",3,0.453359,1.04418]
["YDR422C","SIP1                      ","multicopy suppressor of SNF1                                                                                                                            ",3,0.499782,1.24267]
["YDR454C","GUK1                      ","guanylate kinase                                                                                                                                        ",0,0.49967,1.47464]
["YFL018C","LPD1                      ","dihydrolipoamide dehydrogenase precursor                                                                                                                ",3,0.416077,0.903313]
["YFL047W","YFL047W                   ","similarity to S.pombe hypothetical protein SPAC2F7.18c                                                                                               ",0,-0.445308,1.19609]
["YGL106W","MLC1                      ","MYO2P light chain                                                                                                                                       ",1,-0.501387,1.40688]
["YGL107C","YGL107C                   ","strong similarity to hypothetical protein YBR238c                                                                                                    ",7,-0.236874,0.305714]
["YGL195W","GCN1                      ","translational activator                                                                                                                                 ",6,0.478228,0.927104]
["YGL228W","SHE10                     ","similarity to hypothetical protein YFR039c                                                                                                             ",7,-0.614386,1.36785]
["YGL229C","SAP4                      ","SIT4P-associated protein                                                                                                                                ",6,0.588364,1.36837]
["YGR186W","TFG1                      ","TFIIF subunit (transcription initiation factor), 105 kD                                                                                               ",1,-0.450613,1.15927]
["YGR231C","PHB2                      ","Prohibitin                                                                                                                                              ",8,-0.647426,1.38299]
["YGR232W","NAS6                      ","possible homolog of human 26S proteasome regulatory subunit p28                                                                                         ",0,-0.467552,1.30446]
["YHL027W","RIM101                    ","meiotic regulatory protein                                                                                                                            ",3,0.423396,0.929795]
["YHL029C","YHL029C                   ","hypothetical protein                                                                                                                                 ",3,0.542033,1.44999]
["YHR064C","PDR13                     ","regulator protein involved in pleiotropic drug resistance                                                                                              ",6,0.558672,1.23361]
["YHR090C","YNG2                      ","component of NuA4 histone acetyltransferase complex                                                                                                     ",2,0.478288,1.21874]
["YHR161C","YAP1801                   ","Yeast Adaptor Protein, member of AP180 protein family                                                                                              ",2,-0.410645,0.936958]
["YHR199C","YHR199C                   ","strong similarity to hypothetical protein YHR198c                                                                                                    ",0,0.304027,0.649727]
["YHR200W","RPN10                     ","26S proteasome regulatory subunit                                                                                                                      ",8,-0.652298,1.40642]
["YIL031W","ULP2                      ","SMT3P-specific protease, degrades conjugated ubiquitin-like protein SMT3P                                                                             ",3,0.479753,1.15361]
["YIL032C","YIL032C                   ","hypothetical protein                                                                                                                                 ",6,-0.425336,0.761905]
["YIL036W","CST6                      ","ATF/CREB activator                                                                                                                                      ",8,-0.580053,1.099]
["YIL048W","NEO1                      ","ATPase whose overproduction confers neomycin resistance                                                                                                 ",3,0.421201,0.921795]
["YIR010W","YIR010W                   ","hypothetical protein                                                                                                                                 ",1,0.45904,1.19775]
["YJL062W","LAS21                     ","required for addition of a side chain to the glycosylphospatidylinositol (GPI) core structure                                                          ",0,0.442072,1.18092]
["YJL063C","MRPL8                     ","ribosomal protein L17, mitochondrial                                                                                                                 ",2,-0.421428,0.978234]
["YJL176C","SWI3                      ","transcription regulatory protein                                                                                                                        ",1,0.507741,1.44072]
["YJL202C","YJL202C                   ","questionable ORF                                                                                                                                     ",0,0.306459,0.657416]
["YJR062C","NTA1                      ","amino-terminal amidase                                                                                                                                  ",1,-0.461307,1.20827]
["YJR116W","YJR116W                   ","similarity to hypothetical protein YPR114w                                                                                                           ",7,0.576998,1.20239]
["YJR137C","ECM17                     ","involved in cell wall biogenesis and architecture                                                                                                      ",1,0.487538,1.33545]
["YJR138W","IML1                      ","similarity to C.elegans hypothetical protein T08A11.1                                                                                                   ",6,-0.609627,1.47382]
["YKL008C","LAC1                      ","protein required with LAG1P for ER-to-Golgi transport of GPI-anchored proteins                                                                          ",7,0.593426,1.27243]
["YKL014C","YKL014C                   ","similarity to hypothetical protein SPCC14G10.02 S. pombe                                                                                             ",2,0.464714,1.15758]
["YKL016C","ATP7                      ","F1F0-ATPase complex, FO D subunit                                                                                                                     ",2,-0.368363,0.786683]
["YKL060C","FBA1                      ","fructose-bisphosphate aldolase                                                                                                                          ",0,0.422958,1.09424]
["YKL135C","APL2                      ","AP-1 complex subunit, beta1-adaptin, 82 KD                                                                                                            ",0,-0.185833,0.331151]
["YKL190W","CNB1                      ","calcineurin B, regulatory subunit                                                                                                                     ",8,-0.616425,1.24369]
["YKL195W","YKL195W                   ","similarity to rabbit histidine-rich calcium-binding protein                                                                                          ",6,-0.590326,1.37777]
["YKL196C","YKT6                      ","SNARE protein for Endoplasmic Reticulum-Golgi transport                                                                                                 ",3,0.497277,1.23123]
["YKR056W","TRM2                      ","tRNA(m5U54)methyltransferase                                                                                                                            ",1,0.458217,1.19395]
["YKR082W","NUP133                    ","nuclear pore protein                                                                                                                                  ",3,0.461705,1.07786]
["YLR024C","UBR2                      ","similarity to ubiquitin--protein ligase UBR1P                                                                                                           ",6,0.611971,1.48594]
["YLR025W","SNF7                      ","class E Vps protein                                                                                                                                     ",2,-0.349371,0.724699]
["YLR095C","IOC2                      ","weak similarity to hypothetical protein C. elegans                                                                                                      ",0,0.240845,0.466785]
["YLR096W","KIN2                      ","ser/thr protein kinase                                                                                                                                  ",3,0.533639,1.40652]
["YLR174W","IDP2                      ","isocitrate dehydrogenase, cytosolic                                                                                                                   ",6,0.47245,0.90783]
["YLR293C","GSP1                      ","GTP-binding protein of the ras superfamily                                                                                                              ",6,-0.504324,1.01836]
["YLR330W","CHS5                      ","chitin synthesis protein                                                                                                                                ",6,-0.615164,1.50263]
["YLR396C","VPS33                     ","vacuolar sorting protein                                                                                                                               ",2,-0.431932,1.01969]
["YMR005W","MPT1                      ","required for protein synthesis                                                                                                                          ",3,0.545563,1.46863]
["YMR200W","ROT1                      ","mutant suppresses TOR2 mutation                                                                                                                         ",5,-0.582748,1.45557]
["YNL117W","MLS1                      ","malate synthase 1                                                                                                                                       ",8,-0.550608,0.994216]
["YNL121C","TOM70                     ","mitochondrial outer membrane,specialized import receptor                                                                                             ",1,0.489223,1.34398]
["YNL183C","NPR1                      ","ser/thr protein kinase                                                                                                                                  ",1,-0.488132,1.33845]
["YNL213C","YNL213C                   ","similarity to hypothetical protein Neurospora crassa                                                                                                 ",1,0.426023,1.05232]
["YNL243W","SLA2                      ","cytoskeleton assembly control protein                                                                                                                   ",1,0.416443,1.01269]
["YNL258C","YNL258C                   ","hypothetical protein                                                                                                                                 ",2,0.280624,0.525082]
["YNL267W","PIK1                      ","phosphatidylinositol 4-kinase                                                                                                                           ",2,0.531365,1.48427]
["YNL321W","YNL321W                   ","weak similarity to VCX1P                                                                                                                             ",0,0.502662,1.49139]
["YOL068C","HST1                      ","silencing protein                                                                                                                                       ",3,0.385657,0.798899]
["YOL076W","MDM20                     ","necessary for mitochondrial inheritance and organisation of the actin cytoskeleton                                                                     ",1,0.513934,1.47437]
["YOL116W","MSN1                      ","transcriptional activator                                                                                                                               ",7,-0.631624,1.45198]
["YPL037C","EGD1                      ","GAL4 DNA-binding enhancer protein                                                                                                                       ",6,-0.517857,1.06858]
["YPL228W","CET1                      ","RNA 5'-triphosphatase (mRNA capping enzyme, beta subunit)                                                                                             ",0,0.421608,1.08831]
["YPR017C","DSS4                      ","GDP/GTP exchange factor for SEC4P                                                                                                                       ",6,0.44164,0.810244]
["YPR176C","BET2                      ","geranylgeranyltransferase type II beta subunit                                                                                                          ",2,-0.435341,1.03342]
["YPR178W","PRP4                      ","U4/U6 snRNP 52 KD protein                                                                                                                               ",7,-0.28413,0.388713]
[]
[]
["The number of regulatory targets of Ace2: 44"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL023C","MCM2                      ","member of the MCM2P,MCM3P,CDC46P family                                                                                                               ",3,0.673342,2.33155]
["YBR057C","MUM2                      ","meiotic protein                                                                                                                                         ",1,0.64788,2.4104]
["YBR158W","CST13                     ","weak similarity to TRCDSEMBL:AF176518_1 F-box protein FBL2; human                                                                                      ",4,0.867957,4.95289]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",4,0.723965,2.62283]
["YDR011W","SNQ2                      ","multidrug resistance protein                                                                                                                            ",0,0.602786,2.16091]
["YDR158W","HOM2                      ","aspartate-semialdehyde dehydrogenase                                                                                                                    ",6,-0.753024,2.48344]
["YEL007W","TOS9                      ","similarity to S.pombe PAC2 protein                                                                                                                      ",3,0.607617,1.83625]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",0,-0.572834,1.93562]
["YER081W","SER3                      ","3-phosphoglycerate dehydrogenase                                                                                                                        ",3,-0.856768,5.04137]
["YER124C","YER124C                   ","weak similarity to Dictyostelium WD40 repeat protein 2                                                                                               ",5,0.796238,3.23744]
["YER125W","RSP5                      ","hect domain E3 ubiquitin-protein ligase                                                                                                                 ",8,0.788321,2.32256]
["YER126C","KRE32                     ","weak similarity to E.coli colicin N                                                                                                                    ",1,0.608706,2.08762]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",3,0.631337,2.00025]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",3,0.710617,2.68054]
["YGL007W","YGL007W                   ","questionable ORF                                                                                                                                     ",5,-0.668914,1.97714]
["YGL008C","PMA1                      ","H+-transporting P-type ATPase, major isoform, plasma membrane                                                                                         ",1,0.790455,4.22304]
["YGL028C","SCW11                     ","similarity to glucanase                                                                                                                                ",4,0.782443,3.31262]
["YGL133W","ITC1                      ","subunit of ISW2 chromatin remodelling complex                                                                                                           ",6,-0.627567,1.56937]
["YGL228W","SHE10                     ","similarity to hypothetical protein YFR039c                                                                                                             ",7,-0.656759,1.58505]
["YGL229C","SAP4                      ","SIT4P-associated protein                                                                                                                                ",3,0.580629,1.66646]
["YGR283C","YGR283C                   ","similarity to hypothetical protein YMR310c                                                                                                           ",5,-0.645543,1.81797]
["YHL029C","YHL029C                   ","hypothetical protein                                                                                                                                 ",3,0.595098,1.75542]
["YHR091C","MSR1                      ","arginyl-tRNA synthetase, mitochondrial                                                                                                                ",6,-0.670527,1.82717]
["YHR143W","YHR143W                   ","weak similarity to a-agglutinin core protein AGA1                                                                                                    ",6,0.813994,3.19731]
["YJL075C","YJL075C                   ","questionable ORF                                                                                                                                     ",5,-0.650478,1.85033]
["YJL078C","PRY3                      ","strong similarity to the plant PR-1 class of pathogen related proteins                                                                                  ",4,0.785619,3.35717]
["YJL159W","HSP150                    ","member of the PIR1P/HSP150P/PIR3P family                                                                                                              ",3,0.675124,2.34693]
["YJR044C","YJR044C                   ","weak similarity to putative transport protein YKR103w                                                                                                ",1,-0.536124,1.60063]
["YJR147W","HMS2                      ","High-copy MEP2 Suppressor                                                                                                                               ",7,0.68144,1.72958]
["YJR149W","YJR149W                   ","similarity to 2-nitropropane dioxygenase                                                                                                             ",3,-0.635653,2.03175]
["YKL084W","YKL084W                   ","strong similarity to S.pombe hypothetical protein SPAC29B12                                                                                          ",5,-0.696982,2.19047]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",5,-0.634969,1.75075]
["YKR042W","UTH1                      ","involved in the aging process                                                                                                                           ",6,-0.907815,5.2599]
["YLR286C","CTS1                      ","endochitinase                                                                                                                                           ",5,0.836085,3.87484]
["YML004C","GLO1                      ","glyoxalase I                                                                                                                                            ",3,-0.68948,2.4754]
["YML007W","YAP1                      ","transcriptional activator involved in oxidative stress response                                                                                         ",6,-0.76701,2.62469]
["YML008C","ERG6                      ","S-adenosyl-methionine delta-24-sterol-c-methyltransferase                                                                                               ",5,-0.653558,1.87085]
["YML100W","TSL1                      ","alpha,alpha-trehalose-phosphate synthase, 123 KD subunit                                                                                              ",4,0.652305,2.01109]
["YML101C","YML101C                   ","weak similarity to YMR264w                                                                                                                           ",8,-0.723754,1.81165]
["YMR261C","TPS3                      ","alpha,alpha-trehalose-phosphate synthase, 115 KD subunit                                                                                              ",3,0.632002,2.00507]
["YMR262W","YMR262W                   ","similarity to S.pombe scn1 protein                                                                                                                   ",0,-0.620221,2.30412]
["YNL078W","JIP1                      ","hypothetical protein                                                                                                                                    ",3,0.800678,3.86102]
["YNL098C","RAS2                      ","GTP-binding protein                                                                                                                                     ",0,-0.553311,1.80124]
["YNL241C","ZWF1                      ","glucose-6-phosphate dehydrogenase                                                                                                                       ",6,-0.714202,2.14225]
[]
["The number of non-regulatory targets of Ace2: 37"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL062W","GDH3                      ","NADP-glutamate dehydrogenase                                                                                                                            ",3,0.424584,0.934142]
["YBR157C","ICS2                      ","hypothetical protein                                                                                                                                    ",4,0.550227,1.39612]
["YBR159W","YBR159W                   ","similarity to human 17-beta-hydroxysteroid dehydrogenase                                                                                             ",2,-0.443679,1.06758]
["YBR230C","YBR230C                   ","hypothetical protein                                                                                                                                 ",0,-0.364915,0.858706]
["YDR010C","YDR010C                   ","hypothetical protein                                                                                                                                 ",1,-0.46452,1.22331]
["YDR154C","YDR154C                   ","questionable ORF                                                                                                                                     ",6,-0.430993,0.778434]
["YDR155C","CPH1                      ","cyclophilin (peptidylprolyl isomerase)                                                                                                                  ",1,-0.36381,0.813323]
["YDR157W","YDR157W                   ","questionable ORF                                                                                                                                     ",0,0.421652,1.0885]
["YER079W","YER079W                   ","hypothetical protein                                                                                                                                 ",6,-0.53138,1.1209]
["YER127W","LCP5                      ","NGG1P interacting protein                                                                                                                               ",0,0.294978,0.621556]
["YER177W","BMH1                      ","14-3-3 protein involved in rapamycin-sensitive signalling                                                                                               ",2,-0.32601,0.652712]
["YER189W","YER189W                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,0.56519,1.47281]
["YER190W","YRF1-2                    ","Y'-helicase protein 1                                                                                                                                 ",0,-0.498498,1.46813]
["YFL056C","AAD6                      ","strong similarity to aryl-alcohol dehydrogenases                                                                                                        ",0,-0.486809,1.40444]
["YFL057C","YFL057C                   ","strong similarity to aryl-alcohol dehydrogenases                                                                                                     ",2,-0.330525,0.666273]
["YFR017C","YFR017C                   ","hypothetical protein                                                                                                                                 ",0,-0.442468,1.18277]
["YGL227W","VID30                     ","weak similarity to human RANBPM NP_005484.1                                                                                                            ",0,-0.425031,1.10341]
["YGR125W","YGR125W                   ","similarity to S.pombe hypothetical protein SPAC24H6.11c                                                                                              ",6,-0.496819,0.99139]
["YHL013C","YHL013C                   ","similarity to C.elegans hypothetical protein F21D5.2                                                                                                 ",8,-0.500484,0.83666]
["YHR193C","EGD2                      ","alpha subunit of the nascent polypeptide-associated complex                                                                                             ",5,-0.386557,0.704967]
["YHR195W","NVJ1                      ","part of nucleus-vacuole junctions                                                                                                                       ",4,0.408525,0.823376]
["YJL080C","SCP160                    ","required for maintenance of exact ploidy                                                                                                              ",7,0.524287,1.00175]
["YJL160C","YJL160C                   ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                      ",4,0.498832,1.15948]
["YJR145C","RPS4A                     ","ribosomal protein S4.e.c10                                                                                                                             ",8,0.612718,1.22808]
["YJR146W","YJR146W                   ","questionable ORF                                                                                                                                     ",7,0.556563,1.12053]
["YKL142W","MRP8                      ","ribosomal protein, mitochondrial                                                                                                                      ",6,-0.505225,1.02164]
["YKL150W","MCR1                      ","cytochrome-b5 reductase                                                                                                                                 ",1,-0.420873,1.03088]
["YKL151C","YKL151C                   ","similarity to C.elegans hypothetical protein R107.2                                                                                                  ",1,-0.521207,1.51475]
["YLR397C","AFG2                      ","strong similarity to CDC48                                                                                                                              ",6,-0.59543,1.40253]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",4,-0.527829,1.2882]
["YMR165C","SMP2                      ","involved in plasmid maintenance, respiration and cell proliferation                                                                                   ",2,0.377312,0.81703]
["YNL079C","TPM1                      ","tropomyosin 1                                                                                                                                           ",6,-0.616733,1.5109]
["YNL328C","MDJ2                      ","heat shock protein - chaperone                                                                                                                          ",1,-0.316241,0.656636]
["YNR018W","YNR018W                   ","similarity to TRCDSEMBL:SPAC1565_1 hypothetical protein S. pombe                                                                                     ",7,0.505326,0.937319]
["YOR138C","YOR138C                   ","weak similarity to TRCDSEMBL:AF175293_2 gene: vanSD sensor protein kinase Enterococcus faecium strain vanD glycopeptide resistance gene cluster      ",7,-0.580001,1.2149]
["YPL024W","NCE4                      ","negative regulator of CTS1 expression                                                                                                                   ",3,-0.375773,0.766819]
["YPL025C","YPL025C                   ","questionable ORF                                                                                                                                     ",8,0.52002,0.895246]
[]
[]
["The number of regulatory targets of Cin5: 69"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL030C","PET9                      ","ADP/ATP carrier protein (MCF)                                                                                                                           ",5,0.784304,3.07813]
["YBR007C","YBR007C                   ","hypothetical protein                                                                                                                                 ",3,0.622453,1.93708]
["YBR054W","YRO2                      ","strong similarity to HSP30 heat shock protein Yro1p                                                                                                     ",4,-0.682178,2.2425]
["YBR070C","SAT2                      ","osmotolerance protein                                                                                                                                   ",7,-0.793679,2.65258]
["YBR071W","YBR071W                   ","hypothetical protein                                                                                                                                 ",1,0.61002,2.09767]
["YCL024W","KCC4                      ","kinase coordinate cell cycle progression with the organization of the peripheralcytoskeleton                                                            ",1,0.716725,3.12518]
["YDL169C","UGX2                      ","hypothetical protein                                                                                                                                    ",1,0.634709,2.29625]
["YDR301W","CFT1                      ","pre-mRNA 3'-end processing factor CF II                                                                                                                 ",0,-0.606804,2.19308]
["YDR338C","YDR338C                   ","similarity to ERC1P                                                                                                                                  ",5,-0.689308,2.12948]
["YDR343C","HXT6                      ","high-affinity hexose transporter                                                                                                                        ",0,0.624506,2.34081]
["YDR345C","HXT3                      ","low-affinity hexose transporter                                                                                                                         ",6,-0.775734,2.71871]
["YDR441C","APT2                      ","adenine phosphoribosyltransferase                                                                                                                       ",6,-0.754539,2.49821]
["YDR504C","YDR504C                   ","similarity to hypothetical T.brucei protein                                                                                                          ",5,-0.693517,2.16267]
["YDR508C","GNP1                      ","high-affinity glutamine permease                                                                                                                        ",1,0.568421,1.80202]
["YEL011W","GLC3                      ","1,4-glucan branching enzyme (glycogen branching enzyme)                                                                                               ",0,0.736531,3.58411]
["YFL004W","VTC2                      ","putative polyphosphate synthetase                                                                                                                       ",0,-0.581054,1.99502]
["YGL253W","HXK2                      ","hexokinase II                                                                                                                                           ",8,-0.719172,1.78156]
["YGR035C","YGR035C                   ","hypothetical protein                                                                                                                                 ",1,-0.628352,2.24327]
["YGR171C","MSM1                      ","methionyl-tRNA synthetase                                                                                                                               ",5,0.648112,1.83474]
["YGR178C","PBP1                      ","PAB1P interacting protein                                                                                                                               ",0,0.737397,3.59654]
["YGR192C","TDH3                      ","glyceraldehyde-3-phosphate dehydrogenase 3                                                                                                              ",5,0.764332,2.83636]
["YGR249W","MGA1                      ","similarity to heat shock transcription factors                                                                                                          ",5,-0.737515,2.55213]
["YIL118W","RHO3                      ","GTP-binding protein of the rho family                                                                                                                   ",1,-0.715583,3.11137]
["YIL119C","RPI1                      ","negative regulator of ras-cAMP pathway                                                                                                                  ",5,-0.63628,1.75894]
["YIL170W","HXT12                     ","strong similarity to sugar transport proteins                                                                                                          ",0,0.555638,1.81678]
["YIL171W","HXT12                     ","strong similarity to sugar transport proteins                                                                                                          ",1,0.630242,2.25889]
["YIL172C","YIL172C                   ","identical to FSP2P and similarity to other alpha-glucosidases                                                                                        ",0,0.55888,1.83864]
["YIR001C","SGN1                      ","similarity to D.melanogaster RNA binding protein                                                                                                        ",8,0.752176,2.01456]
["YJL077C","ICS3                      ","hypothetical protein                                                                                                                                    ",0,-0.567902,1.9008]
["YJL171C","YJL171C                   ","similarity to YBR162c                                                                                                                                ",5,0.751627,2.69651]
["YJL219W","HXT9                      ","hexose transport protein                                                                                                                                ",1,0.60883,2.08857]
["YJR003C","YJR003C                   ","hypothetical protein                                                                                                                                 ",2,-0.660419,2.37466]
["YJR061W","YJR061W                   ","similarity to MNN4P                                                                                                                                  ",8,0.701558,1.67178]
["YJR094C","IME1                      ","transcription factor required for sporulation                                                                                                           ",2,-0.648051,2.26906]
["YJR132W","NMD5                      ","NAM7P interacting protein                                                                                                                               ",8,0.719598,1.78434]
["YJR146W","YJR146W                   ","questionable ORF                                                                                                                                     ",6,-0.665152,1.7924]
["YJR158W","HXT16                     ","member of the hexose transporter family of the major facilitator superfamily [MFS]                                                                     ",5,-0.623049,1.67823]
["YKL044W","YKL044W                   ","hypothetical protein                                                                                                                                 ",0,0.76703,4.05933]
["YKL103C","LAP4                      ","aminopeptidase yscI precursor, vacuolar                                                                                                               ",3,0.639915,2.06337]
["YKR066C","CCP1                      ","cytochrome-c peroxidase precursor                                                                                                                       ",1,0.570552,1.81611]
["YKR067W","GPT2                      ","strong similarity to SCT1P                                                                                                                              ",4,-0.651696,2.00667]
["YLL006W","MMM1                      ","required for mitochondrial shape and structure                                                                                                          ",7,0.725333,2.02893]
["YLL007C","YLL007C                   ","hypothetical protein                                                                                                                                 ",2,-0.627565,2.10544]
["YLL052C","AQY2                      ","strong similarity to AQY1                                                                                                                               ",0,-0.669141,2.76331]
["YLL054C","YLL054C                   ","similarity to transcription factor PIP2P                                                                                                             ",0,-0.83333,5.46518]
["YLL061W","MMP1                      ","high affinity S-methylmethionine permease                                                                                                               ",2,-0.623321,2.07317]
["YLR034C","SMF3                      ","strong similarity to SMF2 protein and S.pombe hypothetical protein                                                                                      ",2,-0.64524,2.2458]
["YLR081W","GAL2                      ","galactose (and glucose) permease                                                                                                                        ",3,0.665548,2.26561]
["YLR121C","YPS3                      ","GPI-anchored aspartyl protease 3 (yapsin 3)                                                                                                             ",2,0.664954,2.41477]
["YLR332W","MID2                      ","mating process protein                                                                                                                                  ",4,0.619067,1.78475]
["YML116W","ATR1                      ","aminotriazole and 4-nitroquinoline resistance protein                                                                                                   ",2,-0.821504,4.54985]
["YMR177W","MMT1                      ","mitochondrial gene involved in iron uptake                                                                                                              ",6,-0.669757,1.82214]
["YMR246W","FAA4                      ","long-chain-fatty-acid--CoA ligase                                                                                                                       ",6,-0.692634,1.97893]
["YMR319C","FET4                      ","low affinity Fe(II) iron transport protein                                                                                                              ",0,-0.575134,1.95206]
["YNL087W","YNL087W                   ","weak similarity to synaptogamines                                                                                                                    ",1,-0.655327,2.47772]
["YNL145W","MFA2                      ","mating pheromone a-factor 2                                                                                                                             ",4,-0.715617,2.5407]
["YOL059W","GPD2                      ","glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial                                                                                              ",5,0.638407,1.77231]
["YOL060C","AMI3                      ","similarity to hypothetical C.elegans and A.thaliana proteins                                                                                            ",5,0.706893,2.27249]
["YOR049C","YOR049C                   ","similarity to YER185w, RTA1P                                                                                                                       ",7,0.807376,2.81133]
["YOR178C","GAC1                      ","ser/thr phosphoprotein phosphatase 1, regulatory chain                                                                                                ",1,-0.578198,1.86756]
["YOR230W","WTM1                      ","transcriptional modulator                                                                                                                               ",6,-0.701143,2.04142]
["YOR302W","YOR302W                   ","CPA1 leader peptide                                                                                                                                  ",5,0.750719,2.68688]
["YOR303W","CPA1                      ","arginine-specific carbamoylphosphate synthase, small chain                                                                                            ",5,0.625014,1.68996]
["YOR306C","YOR306C                   ","similarity to human X-linked PEST-containing transporter                                                                                             ",6,0.654675,1.72682]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",1,-0.659938,2.52046]
["YOR317W","FAA1                      ","long-chain-fatty-acid--CoA ligase                                                                                                                       ",2,0.616256,2.02061]
["YPL061W","ALD6                      ","aldehyde dehydrogenase, cytosolic                                                                                                                     ",1,0.584085,1.90814]
["YPR124W","CTR1                      ","copper transport protein                                                                                                                                ",0,-0.547274,1.76149]
["YPR159W","KRE6                      ","glucan synthase subunit                                                                                                                                 ",3,0.646473,2.11311]
[]
["The number of non-regulatory targets of Cin5: 73"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL037W","YAL037W                   ","strong similarity to GTP-binding proteins                                                                                                            ",0,-0.436569,1.15546]
["YBL029W","YBL029W                   ","hypothetical protein                                                                                                                                 ",2,-0.539122,1.527]
["YBR008C","FLR1                      ","fluconazole resistance protein                                                                                                                          ",5,0.49302,1.0571]
["YBR157C","ICS2                      ","hypothetical protein                                                                                                                                    ",1,0.513843,1.47386]
["YCL025C","AGP1                      ","asparagine and glutamine permease                                                                                                                       ",3,0.494375,1.21808]
["YDL037C","YDL037C                   ","strong similarity to glucan 1,4-alpha-glucosidase                                                                                                  ",5,0.467615,0.963115]
["YDL129W","YDL129W                   ","hypothetical protein                                                                                                                                 ",1,-0.357232,0.790417]
["YDL168W","SFA1                      ","long-chain alcohol dehydrogenase                                                                                                                        ",5,0.408848,0.770301]
["YDR042C","YDR042C                   ","hypothetical protein                                                                                                                                 ",3,-0.519237,1.33466]
["YDR077W","SED1                      ","abundant cell surface glycoprotein                                                                                                                      ",1,0.532645,1.58022]
["YDR259C","YAP6                      ","transcription factor, of a fungal-specific family of bzip proteins                                                                                    ",0,0.425153,1.10395]
["YDR300C","PRO1                      ","glutamate 5-kinase                                                                                                                                      ",2,-0.500918,1.32654]
["YDR442W","YDR442W                   ","questionable ORF                                                                                                                                     ",7,0.44117,0.743961]
["YDR505C","PSP1                      ","high copy suppressor of ts mutations in DNA polymerase alpha                                                                                            ",2,0.546491,1.56863]
["YDR510W","SMT3                      ","ubiquitin-like protein                                                                                                                                  ",7,0.642091,1.50581]
["YEL044W","IES6                      ","similarity to SPAC222.04c hypothetical protein S. pombe                                                                                                 ",6,-0.54196,1.16342]
["YEL045C","YEL045C                   ","weak similarity to cytochrome c oxidase III of T.brucei kinetoplast                                                                                  ",2,-0.458107,1.1287]
["YEL046C","GLY1                      ","L-threonine aldolase, low-specific                                                                                                                    ",5,0.576991,1.4263]
["YEL052W","AFG1                      ","ATPase family gene                                                                                                                                      ",4,-0.584496,1.57775]
["YEL053C","MAK10                     ","glucose-repressible protein                                                                                                                            ",0,-0.400513,0.998474]
["YER028C","YER028C                   ","similarity to MIG1P                                                                                                                                  ",5,-0.549867,1.29588]
["YER038C","KRE29                     ","hypothetical protein                                                                                                                                   ",2,-0.484634,1.24821]
["YER073W","ALD5                      ","aldehyde dehydrogenase (NAD+), mitochondrial                                                                                                          ",8,-0.569318,1.05963]
["YGR134W","CAF130                    ","hypothetical protein                                                                                                                                  ",8,-0.482303,0.785053]
["YGR144W","THI4                      ","involved in thiamine biosynthesis and DNA repair                                                                                                        ",2,-0.508105,1.36239]
["YGR180C","RNR4                      ","ribonucleotide reductase small subunit                                                                                                                  ",6,0.576785,1.31419]
["YGR238C","KEL2                      ","involved in cell fusion and morphogenesis                                                                                                               ",6,-0.62723,1.56752]
["YHL034C","SBP1                      ","single-strand nucleic acid binding protein                                                                                                              ",1,0.419781,1.02637]
["YHR047C","AAP1'                     ","alanine/arginine aminopeptidase                                                                                                                        ",5,-0.480783,1.01094]
["YHR049W","YHR049W                   ","similarity to S.pombe dihydrofolate reductase and YOR280c                                                                                            ",0,0.390843,0.959094]
["YHR128W","FUR1                      ","uracil phosphoribosyltransferase                                                                                                                        ",7,0.580281,1.21608]
["YIR020C","YIR020C                   ","hypothetical protein                                                                                                                                 ",0,0.509389,1.52964]
["YJL030W","MAD2                      ","spindle-assembly checkpoint protein                                                                                                                     ",5,0.501795,1.09125]
["YJL031C","BET4                      ","geranylgeranyl transferase, alpha chain                                                                                                               ",5,0.351474,0.609661]
["YJL076W","NET1                      ","required for rDNA silencing and nucleolar integrity                                                                                                     ",7,0.528948,1.01817]
["YJL221C","FSP2                      ","strong similarity to alpha-D-glucosidase                                                                                                                ",3,0.489905,1.19807]
["YJR102C","VPS25                     ","weak similarity to hypothetical protein D. melanogaster                                                                                                ",5,-0.560822,1.34713]
["YJR103W","URA8                      ","CTP synthase 2                                                                                                                                          ",8,-0.402315,0.586283]
["YJR145C","RPS4A                     ","ribosomal protein S4.e.c10                                                                                                                             ",5,0.537732,1.24123]
["YJR147W","HMS2                      ","High-copy MEP2 Suppressor                                                                                                                               ",8,-0.592897,1.14802]
["YKL107W","YKL107W                   ","weak similarity to S.antibioticus probable oxidoreductase                                                                                            ",6,0.615531,1.50456]
["YKL110C","KTI12                     ","involved in resistance to K.lactis killer toxin                                                                                                        ",8,0.593022,1.14851]
["YKL132C","RMA1                      ","similarity to B.subtilis folC protein and strong similarity to YMR113w                                                                                  ",8,0.678363,1.53992]
["YKL142W","MRP8                      ","ribosomal protein, mitochondrial                                                                                                                      ",0,0.416125,1.06442]
["YKL182W","FAS1                      ","fatty-acyl-CoA synthase, beta chain                                                                                                                   ",8,-0.60161,1.18253]
["YKR102W","FLO10                     ","similarity to FLO1P                                                                                                                                    ",6,0.497167,0.992624]
["YLL053C","YLL053C                   ","similarity to water channel proteins                                                                                                                 ",3,0.490759,1.20187]
["YLL062C","MHT1                      ","weak similarity to M.leprae metH2 protein                                                                                                               ",0,-0.399073,0.99254]
["YLR001C","YLR001C                   ","weak similarity to hypothetical protein SPAC22H12.05c S. pombe                                                                                       ",8,-0.470466,0.752856]
["YLR044C","PDC1                      ","pyruvate decarboxylase, isozyme 1                                                                                                                     ",1,-0.424462,1.04578]
["YLR074C","BUD20                     ","weak similarity to human zinc finger protein                                                                                                           ",4,-0.556949,1.4301]
["YLR075W","RPL10                     ","60S large subunit ribosomal protein                                                                                                                    ",7,0.465166,0.812199]
["YLR228C","ECM22                     ","strong similarity to YDR213w, weak similarity to LYS14P                                                                                              ",2,-0.497322,1.30889]
["YLR304C","ACO1                      ","aconitate hydratase                                                                                                                                     ",0,-0.466651,1.29993]
["YLR413W","YLR413W                   ","strong similarity to YKL187c                                                                                                                         ",2,-0.479767,1.22556]
["YML131W","YML131W                   ","similarity to human leukotriene b4 12-hydroxydehydrogenase                                                                                           ",1,0.424328,1.04522]
["YMR082C","YMR082C                   ","hypothetical protein                                                                                                                                 ",0,0.457537,1.25476]
["YMR283C","RIT1                      ","initiator tRNA phosphoribosyl-transferase                                                                                                               ",6,0.487701,0.959419]
["YNL178W","RPS3                      ","ribosomal protein S3.e                                                                                                                                  ",4,-0.470892,1.04586]
["YOL109W","ZEO1                      ","weak similarity to G.hirsutum embryonic abundant protein D-7                                                                                            ",2,-0.49422,1.29384]
["YOL116W","MSN1                      ","transcriptional activator                                                                                                                               ",7,0.614866,1.37012]
["YOL151W","GRE2                      ","similarity to plant dihydroflavonol-4-reductases                                                                                                        ",5,0.579034,1.43662]
["YOL156W","HXT11                     ","low affinity glucose transport protein                                                                                                                 ",6,-0.555688,1.22079]
["YOL157C","YOL157C                   ","strong similarity to alpha-glucosidases                                                                                                              ",5,0.530083,1.20787]
["YOR019W","YOR019W                   ","similarity to YDR474c                                                                                                                                ",4,0.465766,1.02603]
["YOR047C","STD1                      ","dosage-dependent modulator of glucose repression                                                                                                        ",4,0.479466,1.07972]
["YPL062W","YPL062W                   ","hypothetical protein                                                                                                                                 ",1,-0.488235,1.33897]
["YPL165C","YPL165C                   ","weak similarity to YHR207c                                                                                                                           ",1,0.516424,1.48808]
["YPR013C","YPR013C                   ","similarity to transcription factors                                                                                                                  ",5,0.435164,0.852723]
["YPR014C","YPR014C                   ","hypothetical protein                                                                                                                                 ",3,0.370204,0.749121]
["YPR035W","GLN1                      ","glutamate--ammonia ligase                                                                                                                               ",5,0.521468,1.17126]
["YPR065W","ROX1                      ","heme-dependent transcriptional repressor of hypoxic genes                                                                                               ",5,0.346943,0.597977]
["YPR184W","GDB1                      ","similarity to human 4-alpha-glucanotransferase (EC 2.4.1.25)/amylo-1,6-glucosidase (EC 3.2.1.33)                                                      ",2,0.527511,1.46343]
[]
[]
[]
[]
["The number of regulatory targets of Fkh1: 96"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL056W","PTC3                      ","ser/thr protein phosphatase PP2C                                                                                                                        ",0,0.613185,2.24517]
["YBL057C","YBL057C                   ","strong similarity to hypothetical S.pombe protein                                                                                                    ",4,0.667476,2.12494]
["YBL082C","RHK1                      ","mannosyltransferase                                                                                                                                     ",0,0.866914,6.50198]
["YBL083C","YBL083C                   ","questionable ORF                                                                                                                                     ",5,-0.743276,2.60976]
["YBR029C","CDS1                      ","CDP-diacylglycerol synthase                                                                                                                             ",2,0.59628,1.87938]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",1,0.590085,1.95039]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",0,0.675874,2.83424]
["YBR109C","CMD1                      ","calmodulin                                                                                                                                              ",3,-0.592455,1.73882]
["YBR110W","ALG1                      ","beta-mannosyltransferase                                                                                                                                ",8,-0.742617,1.94298]
["YBR139W","YBR139W                   ","strong similarity to carboxypeptidase                                                                                                                ",8,-0.713938,1.74799]
["YCL063W","YCL063W                   ","weak similarity to yeast translation regulator GCD6P                                                                                                 ",0,0.761109,3.96058]
["YCL064C","CHA1                      ","L-serine/L-threonine deaminase                                                                                                                          ",0,0.686583,2.9515]
["YCR075C","ERS1                      ","intracellular protein transport protein                                                                                                                 ",3,-0.714432,2.7198]
["YDL017W","CDC7                      ","protein kinase                                                                                                                                          ",1,-0.582963,1.90034]
["YDL018C","ERP3                      ","weak similarity to DEP1P                                                                                                                                ",1,-0.631025,2.26539]
["YDR003W","YDR003W                   ","strong similarity to hypothetical protein YBR005w                                                                                                    ",1,-0.635934,2.30661]
["YDR085C","AFR1                      ","involved in morphogenesis of the mating projection                                                                                                      ",1,-0.556557,1.72544]
["YDR107C","YDR107C                   ","strong similarity to EMP70 protein                                                                                                                   ",0,0.791589,4.50878]
["YDR108W","GSG1                      ","sporulation specific protein                                                                                                                            ",2,0.567004,1.69015]
["YDR324C","YDR324C                   ","weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins                                                          ",2,0.715891,2.92555]
["YDR325W","YCG1                      ","Yeast Condensin G                                                                                                                                       ",0,0.766845,4.0562]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",0,0.565073,1.88109]
["YER031C","YPT31                     ","GTP-binding protein of the rab family                                                                                                                  ",2,0.616471,2.02219]
["YER032W","FIR1                      ","interacts with the poly(A) polymerase in the two hybrid system                                                                                          ",0,0.832236,5.43615]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",6,0.805694,3.08297]
["YER122C","GLO3                      ","zinc finger protein                                                                                                                                     ",0,0.589777,2.06002]
["YER124C","YER124C                   ","weak similarity to Dictyostelium WD40 repeat protein 2                                                                                               ",6,0.833891,3.50117]
["YER125W","RSP5                      ","hect domain E3 ubiquitin-protein ligase                                                                                                                 ",4,-0.742342,2.81634]
["YFL037W","TUB2                      ","beta-tubulin                                                                                                                                            ",0,0.751243,3.80329]
["YFL038C","YPT1                      ","GTP-binding protein of the rab family                                                                                                                   ",8,-0.671841,1.50516]
["YFR004W","RPN11                     ","26S proteasome regulatory subunit                                                                                                                      ",8,-0.74199,1.93841]
["YFR051C","RET2                      ","coatomer complex delta chain                                                                                                                            ",8,0.78269,2.27017]
["YGL028C","SCW11                     ","similarity to glucanase                                                                                                                                ",6,0.861575,4.01376]
["YGL116W","CDC20                     ","cell division control protein                                                                                                                          ",2,0.709153,2.85085]
["YGL257C","MNT2                      ","alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides                                      ",2,0.750424,3.35113]
["YGR050C","YGR050C                   ","questionable ORF                                                                                                                                     ",5,-0.689167,2.12839]
["YGR092W","DBF2                      ","ser/thr protein kinase related to DBF20P                                                                                                                ",7,-0.874455,3.8803]
["YGR098C","ESP1                      ","required for sister chromatid separation                                                                                                                ",0,0.708066,3.20485]
["YGR099W","TEL2                      ","involved in controlling telomere length and position effect                                                                                             ",3,-0.647048,2.11754]
["YGR171C","MSM1                      ","methionyl-tRNA synthetase                                                                                                                               ",2,0.632924,2.14696]
["YGR270W","YTA7                      ","26S proteasome subunit                                                                                                                                  ",3,-0.54549,1.46824]
["YHR084W","STE12                     ","transcriptional activator                                                                                                                              ",6,0.78249,2.79495]
["YHR094C","HXT1                      ","low-affinity hexose transporter                                                                                                                         ",6,0.62808,1.5722]
["YHR117W","TOM71                     ","protein with similarity to TOM70P/Mas70p                                                                                                               ",4,0.672303,2.16271]
["YHR119W","SET1                      ","involved in chromatin-mediated gene regulation                                                                                                          ",5,0.620983,1.666]
["YHR143W","YHR143W                   ","weak similarity to a-agglutinin core protein AGA1                                                                                                    ",6,0.840502,3.61289]
["YHR183W","GND1                      ","6-phosphogluconate dehydrogenase                                                                                                                        ",3,-0.690029,2.48047]
["YHR200W","RPN10                     ","26S proteasome regulatory subunit                                                                                                                      ",2,0.535163,1.50505]
["YIL158W","YIL158W                   ","similarity to hypothetical protein YKR100c                                                                                                           ",1,0.745609,3.50261]
["YJR091C","JSN1                      ","suppresses the high-temperature lethality of TUB2-150                                                                                                   ",2,0.599785,1.90341]
["YJR092W","BUD4                      ","budding protein                                                                                                                                         ",1,0.849614,5.57392]
["YKL069W","YKL069W                   ","strong similarity to hypothetical E.coli protein b1832                                                                                               ",1,0.703522,2.9701]
["YKL096W-A","CWP2                    ","cell wall mannoprotein                                                                                                                                ",0,0.578403,1.97567]
["YKL157W","APE2                      ","aminopeptidase yscII                                                                                                                                    ",2,-0.5629,1.66515]
["YKR054C","DYN1                      ","dynein heavy chain, cytosolic                                                                                                                         ",2,0.607786,1.95944]
["YKR055W","RHO4                      ","GTP-binding protein of the rho family                                                                                                                   ",1,0.676052,2.67662]
["YKR059W","TIF1                      ","translation initiation factor 4A                                                                                                                        ",1,0.614828,2.13487]
["YLR131C","ACE2                      ","metallothionein expression activator                                                                                                                    ",2,0.807784,4.27287]
["YLR209C","PNP1                      ","strong similarity to purine-nucleoside phosphorylases                                                                                                   ",5,-0.736721,2.54432]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",3,-0.584328,1.68876]
["YLR353W","BUD8                      ","budding protein                                                                                                                                         ",2,0.596557,1.88127]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",2,0.694636,2.69782]
["YLR406C","RPL31B                    ","60S large subunit ribosomal protein L31.e.c12                                                                                                         ",4,0.583789,1.57378]
["YLR407W","YLR407W                   ","hypothetical protein                                                                                                                                 ",4,-0.611981,1.74015]
["YML100W","TSL1                      ","alpha,alpha-trehalose-phosphate synthase, 123 KD subunit                                                                                              ",5,0.677141,2.03697]
["YMR076C","PDS5                      ","precocious dissociation of sister chromatids                                                                                                            ",3,-0.669948,2.30256]
["YMR078C","CTF18                     ","required for accurate chromosome transmission in mitosis and maintenance of normal telomere length                                                     ",2,-0.600341,1.90725]
["YMR144W","YMR144W                   ","weak similarity to MLP1P                                                                                                                             ",3,-0.847376,4.80472]
["YMR183C","SSO2                      ","syntaxin (T-SNARE)                                                                                                                                      ",1,0.764238,3.77902]
["YMR184W","YMR184W                   ","hypothetical protein                                                                                                                                 ",5,-0.732573,2.50405]
["YMR197C","VTI1                      ","v-SNARE: involved in Golgi retrograde protein traffic                                                                                                   ",5,-0.713975,2.33348]
["YMR198W","CIK1                      ","spindle pole body associated protein                                                                                                                    ",5,-0.660246,1.91631]
["YMR215W","YMR215W                   ","similarity to GAS1 protein                                                                                                                           ",0,0.796496,4.60725]
["YNL091W","YNL091W                   ","similarity to chicken h-caldesmon, USO1P and YKL201c                                                                                               ",6,-0.74283,2.38712]
["YNL145W","MFA2                      ","mating pheromone a-factor 2                                                                                                                             ",4,0.810277,3.73619]
["YNL174W","YNL174W                   ","hypothetical protein                                                                                                                                 ",0,0.73348,3.54077]
["YNL176C","YNL176C                   ","weak similarity to HKR1P                                                                                                                             ",0,0.839828,5.64301]
["YNR046W","YNR046W                   ","strong similarity to S.pombe hypothetical protein SPAC31A2.02                                                                                        ",5,-0.734027,2.51807]
["YOL030W","YOL030W                   ","strong similarity to glycoprotein GAS1P                                                                                                              ",5,-0.817293,3.55131]
["YOL114C","YOL114C                   ","similarity to human DS-1 protein                                                                                                                     ",1,0.560786,1.75237]
["YOR312C","RPL20B                    ","60S large subunit ribosomal protein                                                                                                                   ",4,0.682575,2.24577]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",2,0.732201,3.11707]
["YOR357C","GRD19                     ","weak similarity to human sorting nexin 1                                                                                                               ",5,-0.712374,2.31951]
["YOR358W","HAP5                      ","CCAAT-binding factor subunit                                                                                                                            ",0,-0.709338,3.22068]
["YPL032C","SVL3                      ","strong similarity to PAM1P                                                                                                                              ",8,0.859877,3.20426]
["YPL116W","HOS3                      ","similarity to HOS1P, HOS2P, HOS3P, RPD3P and human histone deacetylase HD1                                                                            ",0,0.519593,1.58926]
["YPL139C","UME1                      ","negative regulator of meiosis                                                                                                                           ",5,-0.814113,3.5009]
["YPL140C","MKK2                      ","protein kinase of the map kinase kinase (MEK) family                                                                                                    ",1,0.521711,1.51758]
["YPL141C","YPL141C                   ","strong similarity to protein kinase KIN4P                                                                                                            ",1,0.768988,3.85434]
["YPL155C","KIP2                      ","kinesin-related protein                                                                                                                                 ",1,0.791501,4.24233]
["YPL226W","NEW1                      ","similarity to translation elongation factor eEF3                                                                                                        ",1,0.522207,1.52037]
["YPL227C","ALG5                      ","dolichol-P-glucose synthetase                                                                                                                           ",0,0.717452,3.32397]
["YPR035W","GLN1                      ","glutamate--ammonia ligase                                                                                                                               ",7,0.776819,2.47534]
["YPR075C","OPY2                      ","pheromone resistant yeast 2                                                                                                                             ",2,-0.56667,1.6881]
["YPR104C","FHL1                      ","transcriptional activator of the forkhead/hnf3 family                                                                                                   ",0,0.637896,2.45955]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",1,0.79148,4.24192]
[]
["The number of non-regulatory targets of Fkh1: 37"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL081W","YBL081W                   ","hypothetical protein                                                                                                                                 ",4,-0.530782,1.30198]
["YBR030W","YBR030W                   ","weak similarity to,regulatory protein MSR1P                                                                                                        ",1,0.363873,0.813548]
["YBR104W","YMC2                      ","mitochondrial carrier protein (MCF)                                                                                                                     ",5,-0.441647,0.873971]
["YBR163W","DEM1                      ","weak similarity to PTA1P (pre-tRNA processing protein)                                                                                                  ",5,0.509081,1.12032]
["YCR092C","MSH3                      ","DNA mismatch repair protein                                                                                                                             ",4,0.51305,1.22113]
["YCR093W","CDC39                     ","nuclear protein                                                                                                                                        ",1,0.480721,1.30141]
["YDL084W","SUB2                      ","probably involved in pre-mRNA splicing                                                                                                                  ",1,0.433869,1.08561]
["YDR027C","LUV1                      ","interacts with the beta-tubulin binding protein RBL2P                                                                                                   ",7,-0.267846,0.359081]
["YDR263C","DIN7                      ","DNA-damage inducible protein                                                                                                                            ",6,0.475041,0.916433]
["YDR452W","PHM5                      ","similarity to human sphingomyelin phosphodiesterase (PIR:S06957)                                                                                        ",8,-0.617947,1.25016]
["YEL015W","YEL015W                   ","weak similarity to SPA2P                                                                                                                             ",8,-0.653695,1.41322]
["YER123W","YCK3                      ","casein kinase, isoform 3                                                                                                                              ",6,-0.451386,0.840201]
["YFR003C","YFR003C                   ","strong similarity to hypothetical protein SPAC6B12.13 - S.pombe                                                                                      ",4,-0.252337,0.406338]
["YFR018C","YFR018C                   ","similarity to human glutaminyl-peptide cyclotransferase                                                                                              ",2,-0.51504,1.39778]
["YFR023W","PES4                      ","DNA-directed DNA polymerase epsilon suppressor                                                                                                          ",5,-0.55441,1.31691]
["YFR052W","RPN12                     ","26S proteasome regulatory subunit                                                                                                                      ",0,-0.420742,1.08451]
["YGL092W","NUP145                    ","nuclear pore protein                                                                                                                                  ",4,0.548195,1.386]
["YGL256W","ADH4                      ","alcohol dehydrogenase IV                                                                                                                                ",4,-0.436804,0.919368]
["YGR188C","BUB1                      ","ser/thr protein kinase                                                                                                                                  ",3,-0.492063,1.20769]
["YGR268C","YGR268C                   ","weak similarity to S.pombe hypothetical protein SPAC17A5                                                                                             ",6,-0.410753,0.72045]
["YHR095W","YHR095W                   ","hypothetical protein                                                                                                                                 ",1,0.359131,0.796988]
["YHR118C","ORC6                      ","origin recognition complex, 50 KD subunit                                                                                                             ",0,0.350562,0.806213]
["YHR199C","YHR199C                   ","strong similarity to hypothetical protein YHR198c                                                                                                    ",6,-0.473503,0.911319]
["YIL076W","SEC28                     ","epsilon-COP coatomer subunit                                                                                                                           ",3,-0.440528,0.993981]
["YIL077C","YIL077C                   ","hypothetical protein                                                                                                                                 ",4,0.330612,0.594187]
["YJL189W","RPL39                     ","60S large subunit ribosomal protein L39.e                                                                                                              ",0,0.454825,1.24157]
["YJL190C","RPS22A                    ","ribosomal protein S15a.e.c10                                                                                                                          ",7,-0.480127,0.857123]
["YKL097C","YKL097C                   ","hypothetical protein                                                                                                                                 ",6,-0.515238,1.0587]
["YLR210W","CLB4                      ","cyclin, G2/M-specific                                                                                                                                 ",2,-0.504709,1.34535]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",0,0.483328,1.38592]
["YML101C","YML101C                   ","weak similarity to YMR264w                                                                                                                           ",1,-0.403099,0.959294]
["YMR086W","YMR086W                   ","similarity to YKL105c                                                                                                                                ",2,0.392729,0.871105]
["YNL093W","YPT53                     ","GTP-binding protein of the RAB family (RAS superfamily)                                                                                                ",6,-0.451428,0.840331]
["YOL023W","IFM1                      ","translation initiation factor 2, mitochondrial                                                                                                        ",6,-0.544368,1.1733]
["YOL031C","YOL031C                   ","weak similarity to Y.lipolytica SLS1 protein precursor                                                                                               ",0,-0.472456,1.32936]
["YOL113W","SKM1                      ","STE20/PAK-like protein kinase                                                                                                                           ",2,0.513971,1.39227]
["YPL117C","IDI1                      ","isopentenyl-diphosphate delta-isomerase                                                                                                                 ",0,0.419419,1.07872]
[]
[]
["The number of regulatory targets of Fkh2: 90"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL028W","YAL028W                   ","similarity to hypothetical protein YOR324c                                                                                                           ",3,-0.618416,1.90908]
["YAR018C","KIN3                      ","ser/thr protein kinase                                                                                                                                  ",3,0.794332,3.75562]
["YBL032W","YBL032W                   ","weak similarity to hnRNP complex protein homolog YBR233w                                                                                             ",0,0.841831,5.69978]
["YBL033C","RIB1                      ","GTP cyclohydrolase II                                                                                                                                   ",1,0.561178,1.75489]
["YBR009C","HHF1                      ","histone H4                                                                                                                                              ",8,0.887011,3.70841]
["YBR010W","HHT1                      ","histone H3                                                                                                                                              ",8,0.92584,4.78412]
["YBR038W","CHS2                      ","chitin synthase II                                                                                                                                      ",2,0.758127,3.45726]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",0,0.552997,1.79915]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",0,0.70389,3.15358]
["YBR133C","HSL7                      ","adapter in a regulatory pathway that relieves tyrosine phosphorylation of CDC28                                                                         ",8,0.851361,3.0714]
["YBR135W","CKS1                      ","cyclin-dependent kinases regulatory subunit                                                                                                             ",0,0.653325,2.60459]
["YBR139W","YBR139W                   ","strong similarity to carboxypeptidase                                                                                                                ",3,0.67215,2.32131]
["YCL059C","KRR1                      ","strong similarity to fission yeast rev interacting protein mis3                                                                                         ",3,0.559824,1.54623]
["YDL017W","CDC7                      ","protein kinase                                                                                                                                          ",2,-0.627563,2.10543]
["YDL018C","ERP3                      ","weak similarity to DEP1P                                                                                                                                ",1,-0.774121,3.93814]
["YDL215C","GDH2                      ","NAD-specific glutamate dehydrogenase (NAD)                                                                                                              ",8,0.698365,1.65282]
["YDR033W","MRH1                      ","membrane protein related to HSP30P                                                                                                                      ",3,0.92888,7.96315]
["YDR146C","SWI5                      ","transcription factor                                                                                                                                    ",1,0.837801,5.25281]
["YDR147W","EKI1                      ","ethanolamine kinase                                                                                                                                     ",0,0.759177,3.92908]
["YDR150W","NUM1                      ","nuclear migration protein                                                                                                                               ",1,0.798413,4.373]
["YDR312W","SSF2                      ","protein with a potential role in mating                                                                                                                 ",3,0.732198,2.91273]
["YDR324C","YDR324C                   ","weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins                                                          ",1,0.673043,2.64663]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",0,0.620227,2.30417]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",2,-0.544983,1.56003]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",6,0.948893,7.32632]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",0,-0.636186,2.44403]
["YER095W","RAD51                     ","DNA repair protein                                                                                                                                     ",1,-0.845376,5.45498]
["YER124C","YER124C                   ","weak similarity to Dictyostelium WD40 repeat protein 2                                                                                               ",6,0.910688,5.36298]
["YER125W","RSP5                      ","hect domain E3 ubiquitin-protein ligase                                                                                                                 ",4,-0.768643,3.12872]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",5,0.645174,1.81558]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",8,-0.773028,2.18432]
["YGL007W","YGL007W                   ","questionable ORF                                                                                                                                     ",5,-0.582672,1.45518]
["YGL008C","PMA1                      ","H+-transporting P-type ATPase, major isoform, plasma membrane                                                                                         ",2,0.810016,4.3161]
["YGL114W","YGL114W                   ","weak similarity to H.influenzae permease                                                                                                             ",7,-0.750807,2.23429]
["YGL116W","CDC20                     ","cell division control protein                                                                                                                          ",2,0.90516,7.19701]
["YGL183C","MND1                      ","weak similarity to hypothetical coiled-coil protein S. pombe                                                                                            ",8,-0.695739,1.63742]
["YGL257C","MNT2                      ","alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides                                      ",2,0.8421,5.02353]
["YGR050C","YGR050C                   ","questionable ORF                                                                                                                                     ",4,-0.678572,2.21297]
["YGR092W","DBF2                      ","ser/thr protein kinase related to DBF20P                                                                                                                ",3,0.834526,4.51026]
["YHL024W","RIM4                      ","No sporulation                                                                                                                                          ",6,-0.732188,2.29194]
["YHR031C","RRM3                      ","DNA helicase involved in rDNA replication and Ty1 transposition                                                                                         ",0,0.783976,4.36204]
["YHR061C","GIC1                      ","CDC42 GTPase-binding protein                                                                                                                            ",3,-0.796521,3.79147]
["YHR143W","YHR143W                   ","weak similarity to a-agglutinin core protein AGA1                                                                                                    ",6,0.937974,6.61382]
["YHR151C","YHR151C                   ","hypothetical protein                                                                                                                                 ",3,0.788323,3.65976]
["YHR152W","SPO12                     ","sporulation protein                                                                                                                                    ",2,0.88929,6.50238]
["YIL123W","SIM1                      ","involved in cell cycle regulation and aging                                                                                                             ",0,0.859267,6.23763]
["YIL158W","YIL158W                   ","similarity to hypothetical protein YKR100c                                                                                                           ",1,0.913086,8.13641]
["YJL051W","YJL051W                   ","hypothetical protein                                                                                                                                 ",1,0.928526,9.15109]
["YJL158C","CIS3                      ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                         ",0,0.779412,4.27741]
["YJR091C","JSN1                      ","suppresses the high-temperature lethality of TUB2-150                                                                                                   ",2,0.64143,2.21471]
["YJR092W","BUD4                      ","budding protein                                                                                                                                         ",1,0.939792,10.0851]
["YJR110W","YJR110W                   ","similarity to human myotubularin                                                                                                                     ",1,0.628105,2.24125]
["YJR127C","ZMS1                      ","transcription factor with similarity to regulatory protein ARD1P                                                                                        ",5,0.706767,2.27142]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",5,-0.778055,2.99935]
["YKR042W","UTH1                      ","involved in the aging process                                                                                                                           ",7,-0.848275,3.39032]
["YLR084C","RAX2                      ","weak similarity to PST1P                                                                                                                                ",2,0.787027,3.90071]
["YLR131C","ACE2                      ","metallothionein expression activator                                                                                                                    ",1,0.765096,3.79248]
["YLR190W","YLR190W                   ","hypothetical protein                                                                                                                                 ",2,0.922382,8.1423]
["YLR286C","CTS1                      ","endochitinase                                                                                                                                           ",7,0.921759,5.22347]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",7,0.803647,2.76667]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",7,0.662516,1.61745]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",1,0.757578,3.67686]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",3,-0.566596,1.58442]
["YML053C","YML053C                   ","hypothetical protein                                                                                                                                 ",4,-0.664287,2.1004]
["YML064C","TEM1                      ","GTP-binding protein of the RAS superfamily                                                                                                              ",1,0.641666,2.35578]
["YML116W","ATR1                      ","aminotriazole and 4-nitroquinoline resistance protein                                                                                                   ",6,-0.771415,2.67156]
["YMR076C","PDS5                      ","precocious dissociation of sister chromatids                                                                                                            ",2,-0.675048,2.5069]
["YMR105C","PGM2                      ","phosphoglucomutase, major isoform                                                                                                                     ",2,-0.693981,2.69116]
["YMR144W","YMR144W                   ","weak similarity to MLP1P                                                                                                                             ",4,-0.665042,2.10618]
["YMR197C","VTI1                      ","v-SNARE: involved in Golgi retrograde protein traffic                                                                                                   ",5,-0.619706,1.65848]
["YMR198W","CIK1                      ","spindle pole body associated protein                                                                                                                    ",4,-0.716138,2.54573]
["YMR199W","CLN1                      ","cyclin, G1/S-specific                                                                                                                                 ",2,-0.824679,4.61799]
["YMR215W","YMR215W                   ","similarity to GAS1 protein                                                                                                                           ",0,0.930737,9.9346]
["YNL046W","YNL046W                   ","hypothetical protein                                                                                                                                 ",5,0.861387,4.39673]
["YNL047C","YNL047C                   ","similarity to probable transcription factor ASK10P and hypothetical protein YPR115w, and strong similarity to hypothetical protein YIL105c         ",8,-0.689096,1.59927]
["YNL172W","APC1                      ","subunit of anaphase-promoting complex (cyclosome)                                                                                                       ",0,0.679469,2.87297]
["YNL173C","MDG1                      ","GTP-binding protein of the pheromone-response pathway                                                                                                   ",0,-0.537157,1.69669]
["YNL174W","YNL174W                   ","hypothetical protein                                                                                                                                 ",0,0.706685,3.18778]
["YNL176C","YNL176C                   ","weak similarity to HKR1P                                                                                                                             ",0,0.562551,1.86369]
["YOR246C","YOR246C                   ","weak similarity to reductases                                                                                                                        ",0,0.821052,5.1531]
["YOR247W","SRL1                      ","similarity to vanadate sensitive suppressor SVS1P                                                                                                       ",3,-0.800478,3.85764]
["YOR248W","TOS11                     ","hypothetical protein                                                                                                                                   ",3,-0.79735,3.80519]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",2,0.823811,4.59919]
["YPL025C","YPL025C                   ","questionable ORF                                                                                                                                     ",5,-0.728849,2.46862]
["YPL116W","HOS3                      ","similarity to HOS1P, HOS2P, HOS3P, RPD3P and human histone deacetylase HD1                                                                            ",0,0.681383,2.89385]
["YPL141C","YPL141C                   ","strong similarity to protein kinase KIN4P                                                                                                            ",1,0.916766,8.35624]
["YPL155C","KIP2                      ","kinesin-related protein                                                                                                                                 ",1,0.956836,12.0157]
["YPR035W","GLN1                      ","glutamate--ammonia ligase                                                                                                                               ",7,0.756855,2.28723]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",1,0.947246,10.833]
["YPR149W","NCE102                    ","involved in non-classical protein export pathway                                                                                                      ",2,0.865382,5.66823]
[]
["The number of non-regulatory targets of Fkh2: 26"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL024C","LTE1                      ","GDP/GTP exchange factor                                                                                                                                 ",3,-0.430023,0.954249]
["YAL029C","MYO4                      ","myosin heavy chain, unconventional (class V) isoform                                                                                                  ",1,0.437877,1.10291]
["YBL097W","BRN1                      ","functional homologue of human BRRN1                                                                                                                     ",1,0.402459,0.956781]
["YBR037C","SCO1                      ","involved in stabilization of COX1P and COX2P                                                                                                            ",8,0.443104,0.682331]
["YDR148C","KGD2                      ","2-oxoglutarate dehydrogenase complex E2 component                                                                                                       ",8,-0.636406,1.33159]
["YDR259C","YAP6                      ","transcription factor, of a fungal-specific family of bzip proteins                                                                                    ",0,-0.419968,1.08112]
["YDR263C","DIN7                      ","DNA-damage inducible protein                                                                                                                            ",5,0.293534,0.469945]
["YDR325W","YCG1                      ","Yeast Condensin G                                                                                                                                       ",0,0.313355,0.679508]
["YDR452W","PHM5                      ","similarity to human sphingomyelin phosphodiesterase (PIR:S06957)                                                                                        ",8,-0.586322,1.12266]
["YDR500C","RPL37B                    ","ribosomal protein L.37.e                                                                                                                              ",4,0.512397,1.21824]
["YER079W","YER079W                   ","hypothetical protein                                                                                                                                 ",6,-0.486058,0.953751]
["YER094C","PUP3                      ","20S proteasome subunit (beta3)                                                                                                                          ",1,-0.240776,0.445965]
["YFR023W","PES4                      ","DNA-directed DNA polymerase epsilon suppressor                                                                                                          ",6,-0.590388,1.37807]
["YGL256W","ADH4                      ","alcohol dehydrogenase IV                                                                                                                                ",0,0.412343,1.04817]
["YGR184C","UBR1                      ","ubiquitin-protein ligase                                                                                                                                ",4,-0.550241,1.39619]
["YGR229C","SMI1                      ","beta-1,3-glucan synthesis protein                                                                                                                     ",8,-0.559589,1.02512]
["YHR032W","ERC1                      ","ethionine resistance protein                                                                                                                            ",0,0.461601,1.27475]
["YJR109C","CPA2                      ","arginine-specific carbamoylphosphate synthase, large chain                                                                                            ",1,-0.426348,1.05368]
["YKR059W","TIF1                      ","translation initiation factor 4A                                                                                                                        ",2,0.47989,1.22613]
["YLR189C","UGT51                     ","sterol glucosyltransferase (UDP-glucose:sterol glucosyltransferase)                                                                                    ",6,-0.359613,0.587102]
["YML063W","RPS1B                     ","ribosomal protein S3a.e                                                                                                                                ",2,0.467621,1.17047]
["YNL040W","YNL040W                   ","weak similarity to M.genitalium alanine--tRNA ligase                                                                                                 ",3,-0.434589,0.971371]
["YNL170W","YNL170W                   ","questionable ORF                                                                                                                                     ",2,-0.313112,0.614863]
["YPL024W","NCE4                      ","negative regulator of CTS1 expression                                                                                                                   ",6,-0.282845,0.416759]
["YPL117C","IDI1                      ","isopentenyl-diphosphate delta-isomerase                                                                                                                 ",8,-0.409311,0.602046]
["YPL142C","YPL142C                   ","questionable ORF                                                                                                                                     ",4,0.471709,1.04905]
[]
[]
[]
[]
["The number of regulatory targets of Rap1: 82"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL033W","POP5                      ","required for processing of tRNAs and rRNAs                                                                                                              ",1,0.670368,2.62029]
["YBR084C-A","RPL19A                  ","60S large subunit ribosomal protein L19.e                                                                                                           ",3,0.656401,2.19098]
["YBR181C","RPS6B                     ","ribosomal protein S6.e                                                                                                                                 ",2,0.598552,1.89492]
["YBR189W","RPS9B                     ","ribosomal protein S9.e.B                                                                                                                               ",3,0.685072,2.43508]
["YBR191W","RPL21A                    ","ribosomal protein L21.e                                                                                                                               ",3,0.648038,2.12518]
["YCR024C-A","PMP1                    ","H+-ATPase subunit, plasma membrane                                                                                                                  ",2,0.812836,4.3717]
["YDL075W","RPL31A                    ","60S large subunit ribosomal protein L31.e                                                                                                             ",4,0.687626,2.28802]
["YDL076C","YDL076C                   ","weak similarity to hypothetical protein S. pombe                                                                                                     ",1,0.551373,1.69295]
["YDL082W","RPL13A                    ","60S large subunit ribosomal protein L13                                                                                                               ",4,0.723376,2.61692]
["YDL133W","YDL133W                   ","hypothetical protein                                                                                                                                 ",1,-0.583054,1.90097]
["YDL136W","RPL35B                    ","60S large subunit ribosomal protein                                                                                                                   ",2,0.551249,1.59607]
["YDR024W","FYV1                      ","hypothetical protein                                                                                                                                    ",4,0.772595,3.17984]
["YDR025W","RPS11A                    ","ribosomal protein S11.e                                                                                                                               ",4,0.621731,1.80183]
["YDR064W","RPS13                     ","ribosomal protein                                                                                                                                      ",2,0.585674,1.80853]
["YDR100W","YDR100W                   ","similarity to Dictyostelium development-specific membrane protein                                                                                    ",1,0.627937,2.23986]
["YDR186C","YDR186C                   ","hypothetical protein                                                                                                                                 ",4,0.720446,2.5878]
["YDR188W","CCT6                      ","component of chaperonin-containing T-complex (zeta subunit)                                                                                             ",4,0.717322,2.5572]
["YDR312W","SSF2                      ","protein with a potential role in mating                                                                                                                 ",4,0.644717,1.95676]
["YDR449C","YDR449C                   ","similarity to hypothetical protein S. pombe                                                                                                          ",1,0.623345,2.20248]
["YDR450W","RPS18A                    ","ribosomal protein S18.e.c4                                                                                                                            ",7,-0.677928,1.70809]
["YDR471W","RPL27B                    ","60S large subunit ribosomal protein                                                                                                                   ",1,0.552584,1.70049]
["YDR500C","RPL37B                    ","ribosomal protein L.37.e                                                                                                                              ",4,0.684758,2.26391]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",3,-0.621399,1.92973]
["YDR544C","YDR544C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",5,0.72816,2.46213]
["YDR545W","YRF1-1                    ","Y'-helicase protein 1                                                                                                                                 ",1,-0.642383,2.36202]
["YEL054C","RPL12A                    ","60S large subunit ribosomal protein L12.e                                                                                                             ",4,0.581313,1.55996]
["YEL074W","YEL074W                   ","similarity to subtelomeric encoded proteins                                                                                                          ",4,0.601433,1.67589]
["YEL075C","YEL075C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",2,-0.566388,1.68637]
["YEL076C","#REF!                     ","                                                                                                                                                       ",5,0.645268,1.81619]
["YER031C","YPT31                     ","GTP-binding protein of the rab family                                                                                                                  ",2,0.611714,1.98756]
["YER032W","FIR1                      ","interacts with the poly(A) polymerase in the two hybrid system                                                                                          ",0,0.734347,3.55302]
["YER074W","RPS24A                    ","40s small subunit ribosomal protein S24.e                                                                                                             ",4,0.58072,1.55667]
["YER117W","RPL23B                    ","ribosomal protein L23.e                                                                                                                               ",7,-0.779115,2.49841]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",6,0.725696,2.23637]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",8,-0.73416,1.88256]
["YGL031C","RPL24A                    ","60S large subunit ribosomal protein L24.e.A                                                                                                           ",4,0.627254,1.8378]
["YGL103W","RPL28                     ","60S large subunit ribosomal protein L27a.e                                                                                                             ",2,0.568205,1.69753]
["YGL123W","RPS2                      ","40S small subunit ribosomal protein                                                                                                                     ",2,0.640652,2.20841]
["YGR034W","RPL26B                    ","60S large subunit ribosomal protein                                                                                                                   ",6,0.652923,1.71612]
["YGR118W","RPS23A                    ","40S small subunit ribosomal protein S23.e                                                                                                             ",2,0.633952,2.15503]
["YGR149W","YGR149W                   ","similarity to PIR:T40675 hypothetical protein SPBC776.05 S. pombe                                                                                    ",1,-0.604995,2.05951]
["YHR096C","HXT5                      ","member of the hexose transporter family                                                                                                                 ",6,0.751565,2.46933]
["YHR203C","RPS4B                     ","ribosomal protein S4.e.c8                                                                                                                              ",2,0.633867,2.15435]
["YHR204W","HTM1                      ","similarity to alpha-mannosidases                                                                                                                        ",3,-0.685546,2.43937]
["YIL018W","RPL2B                     ","60S large subunit ribosomal protein L8.e                                                                                                               ",8,0.733066,1.87493]
["YJL089W","SIP4                      ","interacts with SNF1 protein kinase                                                                                                                      ",0,-0.54633,1.75535]
["YJL134W","LCB3                      ","sphingoid base-phosphate phosphatase                                                                                                                    ",0,0.553912,1.80524]
["YJR058C","APS2                      ","AP-2 complex subunit, sigma2 subunit, 17 KD                                                                                                           ",1,-0.607452,2.07808]
["YKL180W","RPL17A                    ","ribosomal protein L17.e                                                                                                                               ",4,0.592231,1.62184]
["YLR044C","PDC1                      ","pyruvate decarboxylase, isozyme 1                                                                                                                     ",0,0.549043,1.77306]
["YLR047C","YLR047C                   ","similarity to hypothetical protein YGL160w                                                                                                           ",0,0.628964,2.37964]
["YLR048W","RPS0B                     ","40S ribosomal protein p40 homolog B                                                                                                                    ",1,0.550828,1.68957]
["YLR387C","YLR387C                   ","similarity to YBR267w                                                                                                                                ",7,-0.670249,1.6622]
["YLR388W","RPS29A                    ","ribosomal protein S29.e.A                                                                                                                             ",2,0.583853,1.79663]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",0,0.641331,2.49106]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",1,0.741403,3.44403]
["YLR448W","RPL6B                     ","60S large subunit ribosomal protein                                                                                                                    ",2,0.684361,2.59558]
["YLR463C","YLR463C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",5,0.649671,1.84499]
["YLR465C","YLR465C                   ","questionable ORF                                                                                                                                     ",5,0.627378,1.70419]
["YLR467W","YRF1-5                    ","strong similarity to subtelomeric encoded proteins                                                                                                    ",5,0.672816,2.00526]
["YML063W","RPS1B                     ","ribosomal protein S3a.e                                                                                                                                ",2,0.614587,2.0084]
["YMR015C","ERG5                      ","C-22 sterol desaturase                                                                                                                                  ",2,0.652587,2.30716]
["YNL144C","YNL144C                   ","similarity to YHR131c                                                                                                                                ",5,-0.669364,1.98035]
["YNL163C","RIA1                      ","translation elongation factor eEF4                                                                                                                      ",2,0.760421,3.48977]
["YNL329C","PEX6                      ","peroxisomal assembly protein                                                                                                                            ",3,0.612901,1.87152]
["YNL339C","YRF1-6                    ","nearly identical to other subtelomerically encoded putative helicases                                                                                 ",2,-0.628815,2.11504]
["YOL059W","GPD2                      ","glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial                                                                                              ",5,-0.754528,2.72757]
["YOL060C","AMI3                      ","similarity to hypothetical C.elegans and A.thaliana proteins                                                                                            ",6,-0.757965,2.53208]
["YOL082W","CVT19                     ","similarity to YOL083w                                                                                                                                  ",1,-0.581146,1.88778]
["YOL109W","ZEO1                      ","weak similarity to G.hirsutum embryonic abundant protein D-7                                                                                            ",2,0.714187,2.90643]
["YOL127W","RPL25                     ","ribosomal protein L23a.e                                                                                                                               ",2,0.599866,1.90397]
["YOR095C","RKI1                      ","D-ribose-5-phosphate ketol-isomerase                                                                                                                    ",1,0.540907,1.62908]
["YOR096W","RPS7A                     ","ribosomal protein                                                                                                                                      ",2,0.639268,2.19727]
["YOR234C","RPL33B                    ","ribosomal protein L35a.e.c15                                                                                                                          ",2,0.678615,2.54043]
["YOR342C","YOR342C                   ","weak similarity to YAl037w                                                                                                                           ",0,-0.613331,2.24639]
["YOR344C","TYE7                      ","basic helix-loop-helix transcription factor                                                                                                             ",0,-0.632679,2.41253]
["YOR365C","YOR365C                   ","strong similarity to YAL053w                                                                                                                         ",0,-0.559295,1.84146]
["YPL143W","RPL33A                    ","ribosomal protein L35a.e.c16                                                                                                                          ",2,0.672308,2.48149]
["YPL145C","KES1                      ","involved in ergosterol biosynthesis                                                                                                                     ",0,0.643257,2.50891]
["YPR029C","APL4                      ","AP-1 complex subunit, gamma-adaptin, 94 KD                                                                                                            ",0,0.634263,2.42671]
["YPR080W","TEF1                      ","translation elongation factor eEF1 alpha-A chain, cytosolic                                                                                           ",5,-0.663229,1.93699]
["YPR131C","NAT3                      ","N-acetyltransferases                                                                                                                                    ",2,0.599735,1.90306]
[]
["The number of non-regulatory targets of Rap1: 65"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL034C","FUN19                     ","similarity to hypothetical protein YOR338w                                                                                                             ",1,-0.39455,0.926139]
["YBL022C","PIM1                      ","ATP-dependent protease, mitochondrial                                                                                                                 ",1,0.421816,1.03478]
["YBR085W","AAC3                      ","ADP/ATP carrier protein (MCF)                                                                                                                           ",3,-0.436777,0.979655]
["YBR188C","NTC20                     ","splicing factor                                                                                                                                        ",7,0.529841,1.02134]
["YBR190W","YBR190W                   ","questionable ORF                                                                                                                                     ",2,0.505078,1.34719]
["YDL184C","RPL41A                    ","ribosomal protein                                                                                                                                     ",0,0.366608,0.86504]
["YDL186W","YDL186W                   ","hypothetical protein                                                                                                                                 ",2,0.372467,0.800505]
["YDL188C","PPH22                     ","protein ser/thr phosphatase PP2A-2                                                                                                                     ",8,0.485573,0.794138]
["YDL191W","RPL35A                    ","60S large subunit ribosomal protein                                                                                                                   ",5,-0.523701,1.18066]
["YDR418W","RPL12B                    ","60S large subunit ribosomal protein L12.e                                                                                                             ",2,0.499358,1.31886]
["YEL022W","GEA2                      ","GDP/GTP exchange factor for ARF                                                                                                                         ",3,-0.337535,0.650496]
["YEL023C","YEL023C                   ","similarity to hypothetical protein PA2063 - Pseudomonas aeruginosa                                                                                   ",4,-0.531497,1.30534]
["YER116C","SLX8                      ","subunit of HEX3P-SLX8P complex, required for cell growth in the absence of SGS1 or TOP3                                                               ",7,-0.551388,1.10065]
["YFL034W","YFL034W                   ","similarity to hypothetical S. pombe protein and to C.elegans F35D11 protein                                                                          ",2,0.535366,1.50617]
["YGL030W","RPL30                     ","60S large subunit ribosomal protein L30.e                                                                                                              ",2,0.385658,0.846015]
["YGL104C","YGL104C                   ","similarity to glucose transport proteins                                                                                                             ",8,-0.580076,1.09909]
["YGL124C","MON1                      ","similarity to S.pombe hypothetical protein                                                                                                              ",6,-0.596168,1.40615]
["YGL189C","RPS26A                    ","40S small subunit ribosomal protein S26e.c7                                                                                                           ",2,0.541575,1.54074]
["YGR033C","YGR033C                   ","weak similarity to TRCDSEMBLNEW:AP002861_10 Oryza sativa                                                                                             ",5,-0.556584,1.32708]
["YGR117C","YGR117C                   ","hypothetical protein                                                                                                                                 ",2,0.49957,1.3199]
["YGR148C","RPL24B                    ","60S large subunit ribosomal protein L24.e.B                                                                                                           ",4,0.482004,1.08991]
["YHR021C","RPS27B                    ","ribosomal protein S27.e                                                                                                                               ",0,0.403967,1.01281]
["YHR033W","YHR033W                   ","strong similarity to glutamate 5-kinase                                                                                                              ",7,-0.558309,1.12731]
["YHR141C","RPL42B                    ","ribosomal protein L36a.e                                                                                                                              ",7,-0.570546,1.17594]
["YHR142W","CHS7                      ","control of protein export from the ER (like chitin synthase III)                                                                                        ",3,-0.526697,1.37147]
["YIL121W","YIL121W                   ","similarity to antibiotic resistance proteins                                                                                                         ",1,-0.460612,1.20504]
["YIL133C","RPL16A                    ","60S large subunit ribosomal protein                                                                                                                   ",4,0.513583,1.22349]
["YIL148W","RPL40A                    ","ubiquitin                                                                                                                                             ",2,0.376052,0.812709]
["YIL149C","MLP2                      ","involved in translocation of macromolecules between the nucleoplasm and the NPC                                                                         ",7,-0.344436,0.508981]
["YJL090C","DPB11                     ","involved in DNA replication and S-phase checkpoint                                                                                                     ",1,-0.419834,1.02659]
["YJL135W","YJL135W                   ","questionable ORF                                                                                                                                     ",5,-0.585912,1.47191]
["YJL136C","RPS21B                    ","40S small subunit ribosomal protein S21.e                                                                                                             ",2,0.396878,0.886061]
["YJL177W","RPL17B                    ","60s large subunit ribosomal protein L17.e                                                                                                             ",2,0.494447,1.29493]
["YJL189W","RPL39                     ","60S large subunit ribosomal protein L39.e                                                                                                              ",1,0.372393,0.843851]
["YJL190C","RPS22A                    ","ribosomal protein S15a.e.c10                                                                                                                          ",7,-0.523801,1.00005]
["YJL191W","RPS14B                    ","40S small subunit ribosomal protein S14.e.B                                                                                                           ",8,0.516981,0.88591]
["YJL192C","YJL192C                   ","hypothetical protein                                                                                                                                 ",4,0.395607,0.781977]
["YJR059W","PTK2                      ","involved in polyamine uptake                                                                                                                            ",5,0.444641,0.883914]
["YKL006W","RPL14A                    ","ribosomal protein                                                                                                                                     ",3,-0.463587,1.08557]
["YKL062W","MSN4                      ","transcriptional activator                                                                                                                               ",5,0.498194,1.07713]
["YLL037W","YLL037W                   ","weak similarity to human platelet-activating factor receptor                                                                                         ",6,-0.567724,1.27327]
["YLL039C","UBI4                      ","ubiquitin                                                                                                                                               ",2,0.370736,0.794656]
["YLR333C","RPS25B                    ","ribosomal protein S25.e.c12                                                                                                                           ",4,0.48497,1.10191]
["YLR344W","RPL26A                    ","60S large subunit ribosomal protein                                                                                                                   ",2,0.518995,1.41831]
["YLR447C","VMA6                      ","H+-ATPase V0 domain 36 KD subunit, vacuolar                                                                                                           ",2,0.440605,1.05489]
["YML064C","TEM1                      ","GTP-binding protein of the RAS superfamily                                                                                                              ",0,0.49659,1.45757]
["YMR242C","RPL20A                    ","60s large subunit ribosomal protein                                                                                                                   ",8,0.389888,0.558968]
["YNL069C","RPL16B                    ","60S large subunit ribosomal protein                                                                                                                   ",8,0.422552,0.632661]
["YNL096C","RPS7B                     ","strong similarity to ribosomal protein S7                                                                                                              ",2,0.391931,0.868248]
["YNL162W","RPL42A                    ","ribosomal protein L36a.e                                                                                                                              ",7,-0.440049,0.740881]
["YNL302C","RPS19B                    ","40S small subunit ribosomal protein S19.e                                                                                                             ",5,-0.431764,0.841733]
["YNL338W","YNL338W                   ","strong similarity to subtelomeric encoded poteins                                                                                                    ",2,-0.52819,1.46708]
["YOL039W","RPP2A                     ","acidic ribosomal protein P2.beta                                                                                                                       ",2,0.487204,1.26031]
["YOL040C","RPS15                     ","40S small subunit ribosomal protein                                                                                                                    ",3,-0.530865,1.39242]
["YOL128C","YOL128C                   ","strong similarity to protein kinase MCK1P                                                                                                            ",5,0.294616,0.47237]
["YOR293W","RPS10A                    ","ribosomal protein S10.e                                                                                                                               ",6,0.334792,0.528434]
["YOR302W","YOR302W                   ","CPA1 leader peptide                                                                                                                                  ",1,-0.471615,1.25704]
["YOR303W","CPA1                      ","arginine-specific carbamoylphosphate synthase, small chain                                                                                            ",5,-0.576503,1.42384]
["YOR312C","RPL20B                    ","60S large subunit ribosomal protein                                                                                                                   ",5,0.571578,1.39931]
["YOR367W","SCP1                      ","similarity to mammalian smooth muscle protein SM22 and chicken calponin alpha                                                                           ",1,-0.405351,0.968161]
["YPL017C","YPL017C                   ","strong similarity to LPD1P and other dihydrolipoamide dehydrogenases                                                                                 ",8,-0.640465,1.35027]
["YPL131W","RPL5                      ","60S large subunit ribosomal protein L5.e                                                                                                                ",0,0.478433,1.36022]
["YPR102C","RPL11A                    ","ribosomal protein L11.e                                                                                                                               ",2,0.446698,1.08015]
["YPR103W","PRE2                      ","20S proteasome subunit (beta5)                                                                                                                          ",2,0.489254,1.27003]
["YPR132W","RPS23B                    ","40S small subunit ribosomal protein S23.e                                                                                                             ",4,0.387698,0.757341]
[]
[]
[]
[]
["The number of regulatory targets of Swi4: 84"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL002W","HTB2                      ","histone H2B.2                                                                                                                                           ",2,0.819242,4.50225]
["YBL003C","HTA2                      ","histone H2A.2                                                                                                                                           ",2,0.823774,4.5984]
["YBR070C","SAT2                      ","osmotolerance protein                                                                                                                                   ",1,0.739891,3.42331]
["YBR071W","YBR071W                   ","hypothetical protein                                                                                                                                 ",0,0.841811,5.6992]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",3,0.702761,2.60192]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",3,0.621231,1.92856]
["YBR161W","YBR161W                   ","strong similarity to SUR1P                                                                                                                           ",1,0.634436,2.29395]
["YBR162C","TOS1                      ","similarity to hypothetical protein YJL171c                                                                                                              ",0,-0.554839,1.81143]
["YCR064C","YCR064C                   ","questionable ORF                                                                                                                                     ",6,0.726064,2.23947]
["YCR065W","HCM1                      ","transcription factor                                                                                                                                    ",0,0.791597,4.50892]
["YDL055C","PSA1                      ","mannose-1-phosphate guanyltransferase                                                                                                                   ",2,0.643039,2.22778]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",8,0.840968,2.92199]
["YDR011W","SNQ2                      ","multidrug resistance protein                                                                                                                            ",4,0.793068,3.46526]
["YDR224C","HTB1                      ","histone H2B                                                                                                                                             ",2,0.920521,8.02783]
["YDR225W","HTA1                      ","histone H2A                                                                                                                                             ",2,0.891188,6.57852]
["YDR309C","GIC2                      ","CDC42 GTPase-binding protein                                                                                                                            ",0,0.600656,2.14406]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",3,0.776886,3.48708]
["YDR500C","RPL37B                    ","ribosomal protein L.37.e                                                                                                                              ",8,-0.741711,1.93638]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",1,0.568932,1.80539]
["YDR507C","GIN4                      ","ser/thr protein kinase                                                                                                                                  ",0,0.824739,5.24376]
["YDR508C","GNP1                      ","high-affinity glutamine permease                                                                                                                        ",0,0.711719,3.25056]
["YDR526C","YDR526C                   ","questionable ORF                                                                                                                                     ",6,0.706145,2.07931]
["YEL040W","UTR2                      ","cell wall protein                                                                                                                                       ",3,-0.782044,3.56345]
["YER001W","MNN1                      ","alpha-1,3-mannosyltransferase                                                                                                                         ",1,0.854677,5.72189]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",0,0.899355,7.89293]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",3,-0.712078,2.69549]
["YER079W","YER079W                   ","hypothetical protein                                                                                                                                 ",1,-0.527423,1.55002]
["YER111C","SWI4                      ","transcription factor                                                                                                                                    ",0,0.997503,10]
["YER145C","FTR1                      ","iron permease that mediates high-affinity iron uptake                                                                                                   ",7,0.753159,2.25466]
["YGL038C","OCH1                      ","alpha-1,6-mannosyltransferase                                                                                                                         ",0,0.867329,6.5169]
["YGL253W","HXK2                      ","hexokinase II                                                                                                                                           ",7,-0.65215,1.55965]
["YGR014W","MSB2                      ","multicopy suppressor of a CDC24 bud emergence defect                                                                                                    ",1,0.654973,2.47447]
["YGR109C","CLB6                      ","cyclin, B-type                                                                                                                                        ",0,0.92998,9.8723]
["YGR151C","YGR151C                   ","questionable ORF                                                                                                                                     ",0,0.860776,6.28829]
["YGR152C","RSR1                      ","GTP-binding protein                                                                                                                                     ",0,0.865624,6.45599]
["YGR153W","TOS10                     ","hypothetical protein                                                                                                                                   ",0,0.649277,2.56564]
["YGR189C","CRH1                      ","family of putative glycosidases might exert a common role in cell wall organization                                                                     ",1,0.851448,5.62674]
["YGR190C","YGR190C                   ","questionable ORF                                                                                                                                     ",0,-0.626157,2.35511]
["YGR221C","TOS2                      ","similarity to hypothetical protein YHR149c                                                                                                              ",0,0.833268,5.46353]
["YHR061C","GIC1                      ","CDC42 GTPase-binding protein                                                                                                                            ",2,0.730977,3.10215]
["YHR149C","YHR149C                   ","similarity to hypothetical protein YGR221c                                                                                                           ",0,0.888972,7.39101]
["YIL056W","YIL056W                   ","similarity to YER064c                                                                                                                                ",8,-0.761734,2.08992]
["YIL123W","SIM1                      ","involved in cell cycle regulation and aging                                                                                                             ",3,0.850171,4.8731]
["YJL158C","CIS3                      ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                         ",8,-0.781157,2.25622]
["YJL186W","MNN5                      ","putative mannosyltransferase                                                                                                                            ",2,0.560983,1.65359]
["YJL187C","SWE1                      ","ser/tyr dual-specifity protein kinase                                                                                                                   ",1,0.839292,5.2916]
["YJL194W","CDC6                      ","cell division control protein                                                                                                                           ",7,0.93762,5.92862]
["YJR054W","YJR054W                   ","similarity to hypothetical protein YML047c                                                                                                           ",1,0.835471,5.19311]
["YKL008C","LAC1                      ","protein required with LAG1P for ER-to-Golgi transport of GPI-anchored proteins                                                                          ",2,0.750823,3.35651]
["YKL096W","CWP1                      ","cell wall mannoprotein                                                                                                                                  ",8,-0.84381,2.96156]
["YKL096W-A","CWP2                    ","cell wall mannoprotein                                                                                                                                ",8,-0.694085,1.62781]
["YKL103C","LAP4                      ","aminopeptidase yscI precursor, vacuolar                                                                                                               ",1,0.585275,1.91645]
["YKR013W","PRY2                      ","similarity to the plant PR-1 class of pathogen related proteins                                                                                         ",1,0.742266,3.45595]
["YKR093W","PTR2                      ","peptide transporter                                                                                                                                     ",7,0.67362,1.68216]
["YLR056W","ERG3                      ","C-5 sterol desaturase                                                                                                                                   ",3,0.595294,1.75666]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",2,0.70592,2.81585]
["YLR332W","MID2                      ","mating process protein                                                                                                                                  ",6,-0.798907,2.99417]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",7,-0.65404,1.57001]
["YML027W","YOX1                      ","homoeodomain protein                                                                                                                                    ",0,0.877875,6.91759]
["YML101C","YML101C                   ","weak similarity to YMR264w                                                                                                                           ",1,0.712524,3.07476]
["YMR179W","SPT21                     ","required for normal transcription at a number of loci                                                                                                  ",0,0.926785,9.61825]
["YMR199W","CLN1                      ","cyclin, G1/S-specific                                                                                                                                 ",0,0.854617,6.08593]
["YMR305C","SCW10                     ","similarity to B.japonicum putative beta-(-6)glucan transferase                                                                                         ",6,-0.843319,3.66235]
["YMR306W","FKS3                      ","similarity to 1,3-beta-glucan synthases                                                                                                               ",1,0.598634,2.01222]
["YMR307W","GAS1                      ","glycophospholipid-anchored surface glycoprotein                                                                                                         ",6,-0.78846,2.865]
["YNL231C","PDR16                     ","protein involved in lipid biosynthesis and multidrug resistance                                                                                        ",5,-0.843454,4.01535]
["YNL295W","YNL295W                   ","hypothetical protein                                                                                                                                 ",7,0.69203,1.79642]
["YNL298W","CLA4                      ","ser/thr protein kinase                                                                                                                                  ",2,-0.825816,4.64281]
["YNL300W","TOS6                      ","similarity to MID2P                                                                                                                                     ",1,0.845996,5.47212]
["YOL011W","PLB3                      ","phospholipase B (lysophospholipase)                                                                                                                     ",7,0.87913,3.98175]
["YOL012C","HTZ1                      ","evolutionarily conserved member of the histone H2A F/Z family of histone variants                                                                       ",3,0.827992,4.37187]
["YOL113W","SKM1                      ","STE20/PAK-like protein kinase                                                                                                                           ",5,0.746493,2.64271]
["YOR246C","YOR246C                   ","weak similarity to reductases                                                                                                                        ",3,0.778884,3.51637]
["YOR247W","SRL1                      ","similarity to vanadate sensitive suppressor SVS1P                                                                                                       ",2,0.720952,2.98331]
["YOR248W","TOS11                     ","hypothetical protein                                                                                                                                   ",2,0.761678,3.50776]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",5,0.706401,2.26833]
["YOR372C","NDD1                      ","protein required for nuclear division                                                                                                                   ",2,0.608181,1.96225]
["YOR373W","NUD1                      ","cell cycle regulatory protein                                                                                                                           ",2,0.558592,1.63928]
["YOR378W","YOR378W                   ","strong similarity to aminotriazole resistance protein                                                                                                ",1,0.592862,1.97027]
["YPL126W","NAN1                      ","weak similarity to fruit fly TFIID subunit p85                                                                                                          ",0,-0.531307,1.66021]
["YPL127C","HHO1                      ","histone H1 protein                                                                                                                                      ",2,0.861058,5.53792]
["YPL163C","SVS1                      ","vanadate sensitive suppressor                                                                                                                           ",1,0.920855,8.61555]
["YPL267W","YPL267W                   ","weak similarity to C.elegans transcription factor unc-86                                                                                             ",0,0.877251,6.89266]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",5,0.790092,3.15389]
[]
[" The number of non-regulatory targets of Swi4: 62"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBR112C","CYC8                      ","general repressor of transcription                                                                                                                      ",0,-0.30518,0.653365]
["YBR162W-A","YSY6                    ","secretory pathway protein                                                                                                                             ",7,-0.547288,1.08514]
["YDL126C","CDC48                     ","microsomal protein of CDC48/PAS1/SEC18 family of ATPases                                                                                               ",1,-0.338419,0.727151]
["YDL185W","TFP1                      ","H+-ATPase V1 domain 69 KD catalytic subunit, vacuolar                                                                                                 ",7,-0.329879,0.478333]
["YDL187C","YDL187C                   ","questionable ORF                                                                                                                                     ",3,-0.313698,0.583756]
["YDR010C","YDR010C                   ","hypothetical protein                                                                                                                                 ",7,0.477,0.847574]
["YDR227W","SIR4                      ","silencing regulatory and DNA-repair protein                                                                                                             ",6,-0.513737,1.05307]
["YDR441C","APT2                      ","adenine phosphoribosyltransferase                                                                                                                       ",1,0.361944,0.806783]
["YDR442W","YDR442W                   ","questionable ORF                                                                                                                                     ",4,0.245874,0.392426]
["YDR452W","PHM5                      ","similarity to human sphingomyelin phosphodiesterase (PIR:S06957)                                                                                        ",2,-0.517195,1.40893]
["YDR453C","YDR453C                   ","strong similarity to thiol-specific antioxidant proteins                                                                                             ",5,0.339592,0.579307]
["YDR509W","YDR509W                   ","questionable ORF                                                                                                                                     ",8,-0.636723,1.33304]
["YDR510W","SMT3                      ","ubiquitin-like protein                                                                                                                                  ",8,-0.536781,0.948321]
["YER011W","TIR1                      ","cold-shock induced protein of the TIR1P,TIP1P family                                                                                                  ",8,-0.673397,1.51337]
["YER112W","LSM4                      ","Sm-like (Lsm) protein                                                                                                                                   ",0,0.290703,0.608487]
["YER146W","LSM5                      ","Sm-like (Lsm) protein                                                                                                                                   ",7,-0.333967,0.486829]
["YER177W","BMH1                      ","14-3-3 protein involved in rapamycin-sensitive signalling                                                                                               ",1,0.163676,0.270357]
["YFR017C","YFR017C                   ","hypothetical protein                                                                                                                                 ",7,0.618058,1.38532]
["YGL179C","TOS3                      ","strong similarity to PAK1P, ELM1P and KIN82P                                                                                                          ",6,-0.393733,0.674074]
["YGL227W","VID30                     ","weak similarity to human RANBPM NP_005484.1                                                                                                            ",0,0.508553,1.52484]
["YGR013W","SNU71                     ","associated with U1 snRNP, no counterpart in mammalian U1 snRNP                                                                                       ",6,0.476978,0.922907]
["YGR050C","YGR050C                   ","questionable ORF                                                                                                                                     ",2,0.449379,1.09142]
["YGR249W","MGA1                      ","similarity to heat shock transcription factors                                                                                                          ",2,-0.537074,1.51561]
["YGR279C","SCW4                      ","similarity to glucanase                                                                                                                                 ",8,-0.504599,0.848723]
["YHR150W","YHR150W                   ","weak similarity to YDR479c                                                                                                                           ",6,0.429381,0.773697]
["YIL121W","YIL121W                   ","similarity to antibiotic resistance proteins                                                                                                         ",2,-0.310092,0.606185]
["YIR020C","YIR020C                   ","hypothetical protein                                                                                                                                 ",4,-0.201638,0.302996]
["YJL184W","YJL184W                   ","hypothetical protein                                                                                                                                 ",6,0.576205,1.31153]
["YJL185C","YJL185C                   ","hypothetical protein                                                                                                                                 ",7,-0.586688,1.24322]
["YJL196C","ELO1                      ","fatty acid elongation protein                                                                                                                           ",8,0.606393,1.20192]
["YJR148W","BAT2                      ","branched chain amino acid aminotransferase, cytosolic                                                                                                 ",0,0.248201,0.486506]
["YKL007W","CAP1                      ","F-actin capping protein alpha subunit                                                                                                                   ",0,0.371902,0.885038]
["YKL044W","YKL044W                   ","hypothetical protein                                                                                                                                 ",5,-0.515026,1.14452]
["YKL097C","YKL097C                   ","hypothetical protein                                                                                                                                 ",0,-0.438525,1.16446]
["YKR011C","TOS5                      ","hypothetical protein                                                                                                                                    ",1,-0.272479,0.529314]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",8,-0.640144,1.34878]
["YKR042W","UTH1                      ","involved in the aging process                                                                                                                           ",5,0.498054,1.07658]
["YLR044C","PDC1                      ","pyruvate decarboxylase, isozyme 1                                                                                                                     ",6,0.32662,0.509907]
["YLR055C","SPT8                      ","transcriptional adaptor or co-activator                                                                                                                 ",5,0.560473,1.34547]
["YLR084C","RAX2                      ","weak similarity to PST1P                                                                                                                                ",2,-0.493632,1.291]
["YLR255C","YLR255C                   ","hypothetical protein                                                                                                                                 ",2,0.452766,1.10577]
["YLR256W","HAP1                      ","transcription factor                                                                                                                                    ",1,-0.389556,0.90714]
["YML100W","TSL1                      ","alpha,alpha-trehalose-phosphate synthase, 123 KD subunit                                                                                              ",3,-0.551315,1.49949]
["YMR016C","SOK2                      ","regulatory protein in the PKA signal transduction pathway                                                                                               ",5,-0.448585,0.897141]
["YMR017W","SPO20                     ","DBF2P interacting protein                                                                                                                              ",6,0.422727,0.754367]
["YMR070W","MOT3                      ","high-copy suppressor of MOT1-SPT3 synthetic lethality                                                                                                   ",4,0.315373,0.55461]
["YMR135C","YMR135C                   ","weak similarity to conserved hypothetical protein S. pombe                                                                                           ",0,-0.320249,0.70201]
["YMR144W","YMR144W                   ","weak similarity to MLP1P                                                                                                                             ",1,0.436879,1.09858]
["YMR279C","YMR279C                   ","strong similarity to aminotriazole resistance protein                                                                                                ",8,-0.62454,1.27861]
["YNL178W","RPS3                      ","ribosomal protein S3.e                                                                                                                                  ",0,-0.471893,1.32648]
["YNL289W","PCL1                      ","cyclin, G1/S-specific                                                                                                                                 ",0,0.24819,0.486475]
["YNL297C","MON2                      ","similarity to S.pombe hypothetical protein SPAC23D3.13c                                                                                                 ",8,0.596239,1.16113]
["YNL301C","RPL18B                    ","60S large subunit ribosomal protein L18.e                                                                                                             ",2,0.482118,1.23646]
["YNR044W","AGA1                      ","a-agglutinin anchor subunit                                                                                                                             ",8,0.558406,1.021]
["YOL114C","YOL114C                   ","similarity to human DS-1 protein                                                                                                                     ",0,-0.319568,0.69977]
["YOR138C","YOR138C                   ","weak similarity to TRCDSEMBL:AF175293_2 gene: vanSD sensor protein kinase Enterococcus faecium strain vanD glycopeptide resistance gene cluster      ",8,0.509463,0.863169]
["YOR344C","TYE7                      ","basic helix-loop-helix transcription factor                                                                                                             ",5,-0.350997,0.608426]
["YPL024W","NCE4                      ","negative regulator of CTS1 expression                                                                                                                   ",7,0.474119,0.838853]
["YPL025C","YPL025C                   ","questionable ORF                                                                                                                                     ",3,0.384282,0.794385]
["YPL056C","YPL056C                   ","hypothetical protein                                                                                                                                 ",5,0.362435,0.638504]
["YPR013C","YPR013C                   ","similarity to transcription factors                                                                                                                  ",0,-0.463679,1.28506]
["YPR159W","KRE6                      ","glucan synthase subunit                                                                                                                                 ",6,-0.614723,1.50031]
[]
[]
["The number of regulatory targets of Swi5: 42"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL022C","FUN26                     ","intracellular membrane protein involved in nucleoside transport                                                                                        ",1,0.722324,3.19405]
["YBL108W","YBL108W                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,-0.720296,2.58631]
["YBR158W","CST13                     ","weak similarity to TRCDSEMBL:AF176518_1 F-box protein FBL2; human                                                                                      ",4,0.649299,1.98937]
["YDL030W","PRP9                      ","pre-mRNA splicing factor (snRNA-associated protein)                                                                                                     ",1,0.64243,2.36242]
["YDL032W","YDL032W                   ","questionable ORF                                                                                                                                     ",0,0.653205,2.60343]
["YDL115C","YDL115C                   ","weak similarity to hypothetical protein D. melanogaster                                                                                              ",6,-0.816379,3.23142]
["YDL117W","CYK3                      ","similarity to hypothetical S. pombe protein, protein possibly involved in cytokinesis                                                                 ",2,0.782133,3.82004]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",3,0.612126,1.86631]
["YDL174C","DLD1                      ","D-lactate ferricytochrome C oxidoreductase (D-LCR)                                                                                                      ",5,-0.66266,1.93302]
["YDL179W","PCL9                      ","cyclin like protein interacting with PHO85P                                                                                                             ",3,0.689715,2.47757]
["YDL224C","WHI4                      ","strong similarity to WHI3 protein                                                                                                                       ",0,0.711607,3.24915]
["YDL225W","SHS1                      ","septin                                                                                                                                                  ",0,0.582101,2.00271]
["YDL226C","GCS1                      ","ADP-ribosylation factor GTPase-activating protein (ARF-GAP)                                                                                             ",0,0.586426,2.03481]
["YDR345C","HXT3                      ","low-affinity hexose transporter                                                                                                                         ",4,0.711623,2.50257]
["YDR398W","YDR398W                   ","similarity to human KIAA0007 gene                                                                                                                    ",1,0.580533,1.88355]
["YEL077C","YEL077C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,0.657665,2.05049]
["YGL028C","SCW11                     ","similarity to glucanase                                                                                                                                ",4,0.795141,3.49626]
["YGR086C","YGR086C                   ","strong similarity to hypothetical protein YPL004c                                                                                                    ",3,0.728952,2.87618]
["YGR189C","CRH1                      ","family of putative glycosidases might exert a common role in cell wall organization                                                                     ",0,-0.550477,1.78248]
["YIL009W","FAA3                      ","acyl CoA synthase                                                                                                                                       ",3,0.73374,2.9303]
["YIL051C","MMF1                      ","required for maintenance of mitochondrial DNA                                                                                                           ",0,0.677284,2.84935]
["YIL129C","TAO3                      ","Transcriptional Activator of OCH1                                                                                                                       ",3,-0.761785,3.27662]
["YJL078C","PRY3                      ","strong similarity to the plant PR-1 class of pathogen related proteins                                                                                  ",4,0.826455,4.02253]
["YJL080C","SCP160                    ","required for maintenance of exact ploidy                                                                                                              ",7,0.693984,1.8091]
["YJL159W","HSP150                    ","member of the PIR1P/HSP150P/PIR3P family                                                                                                              ",3,0.658958,2.21155]
["YKL163W","PIR3                      ","member of the PIR1P/Pir2p/PIR3P family                                                                                                                  ",3,0.697941,2.5551]
["YKL164C","PIR1                      ","required for tolerance to heat shock                                                                                                                    ",3,0.718808,2.76575]
["YKL185W","ASH1                      ","negative regulator of HO transcription                                                                                                                  ",2,0.698066,2.73304]
["YKL186C","MTR2                      ","mRNA transport protein                                                                                                                                  ",1,0.69682,2.89504]
["YLR194C","YLR194C                   ","hypothetical protein                                                                                                                                 ",2,0.773622,3.68545]
["YLR286C","CTS1                      ","endochitinase                                                                                                                                           ",6,0.820662,3.29418]
["YML125C","YML125C                   ","strong similarity to cytochrome-b5- and nitrate reductases                                                                                           ",5,-0.698274,2.20095]
["YML131W","YML131W                   ","similarity to human leukotriene b4 12-hydroxydehydrogenase                                                                                           ",6,-0.860939,4.00054]
["YMR173W","DDR48                     ","heat shock protein                                                                                                                                     ",3,-0.719474,2.77283]
["YMR261C","TPS3                      ","alpha,alpha-trehalose-phosphate synthase, 115 KD subunit                                                                                              ",3,0.615338,1.88802]
["YNL078W","JIP1                      ","hypothetical protein                                                                                                                                    ",2,0.724194,3.02107]
["YNL079C","TPM1                      ","tropomyosin 1                                                                                                                                           ",5,-0.676905,2.03523]
["YNL145W","MFA2                      ","mating pheromone a-factor 2                                                                                                                             ",2,0.583738,1.79589]
["YNL238W","KEX2                      ","endoproteinase of late golgi compartment                                                                                                                ",7,0.790853,2.62156]
["YNL241C","ZWF1                      ","glucose-6-phosphate dehydrogenase                                                                                                                       ",6,-0.704635,2.06778]
["YPL157W","YPL157W                   ","weak similarity to S.pombe hypothetical protein SPAC2G11.15c                                                                                         ",2,0.767494,3.59272]
["YPL158C","YPL158C                   ","weak similarity to human nucleolin                                                                                                                   ",2,0.883873,6.29411]
[]
["The number of non-regulatory targets of Swi5: 64"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YAL017W","FUN31                     ","similarity to ser/thr protein kinases                                                                                                                  ",7,0.651351,1.5553]
["YAL018C","YAL018C                   ","weak similarity to hypothetical proteins YOL047c and YOL048c                                                                                         ",6,-0.531054,1.11961]
["YAR009C","#REF!                     ","                                                                                                                                                       ",2,-0.484244,1.24638]
["YBR070C","SAT2                      ","osmotolerance protein                                                                                                                                   ",5,0.355983,0.621426]
["YBR071W","YBR071W                   ","hypothetical protein                                                                                                                                 ",3,0.451995,1.03875]
["YDL035C","GPR1                      ","G-protein coupled receptor                                                                                                                              ",1,-0.422097,1.03594]
["YDL173W","YDL173W                   ","hypothetical protein                                                                                                                                 ",4,-0.272656,0.451572]
["YDL223C","YDL223C                   ","weak similarity to mucin                                                                                                                             ",6,0.440463,0.80668]
["YDR112W","YDR112W                   ","questionable ORF                                                                                                                                     ",0,-0.392067,0.964017]
["YDR397C","NCB2                      ","functional homolog of human NC2beta/Dr1                                                                                                                 ",4,0.555426,1.42233]
["YDR543C","YDR543C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",0,-0.262712,0.526578]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",8,-0.606164,1.20098]
["YER079W","YER079W                   ","hypothetical protein                                                                                                                                 ",6,-0.455753,0.85389]
["YER138C","#REF!                     ","                                                                                                                                                       ",3,-0.523061,1.35341]
["YER189W","YER189W                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",8,-0.511862,0.870369]
["YER190W","YRF1-2                    ","Y'-helicase protein 1                                                                                                                                 ",4,0.576507,1.53347]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",3,0.578312,1.65263]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",8,-0.685824,1.58088]
["YFL063W","YFL063W                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,0.518504,1.24552]
["YFL064C","YFL064C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",8,-0.425776,0.640278]
["YFL065C","YFL065C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,0.470008,1.04242]
["YFR017C","YFR017C                   ","hypothetical protein                                                                                                                                 ",6,-0.616497,1.50965]
["YGL108C","YGL108C                   ","weak similarity to hypotetical S.pombe protein                                                                                                       ",0,0.477756,1.35669]
["YGL139W","YGL139W                   ","strong similarity to hypothetical protein YPL221w                                                                                                    ",0,0.497787,1.46418]
["YGL140C","YGL140C                   ","weak similarity to Lactobacillus putative histidine protein kinase SppK                                                                              ",1,0.537945,1.61141]
["YGL226W","YGL226W                   ","similarity to N.crassa cytochrome-c oxidase chain V                                                                                                  ",7,-0.663116,1.62087]
["YGL227W","VID30                     ","weak similarity to human RANBPM NP_005484.1                                                                                                            ",5,0.576233,1.42249]
["YGR060W","ERG25                     ","C-4 sterol methyl oxidase                                                                                                                              ",4,0.498207,1.15683]
["YGR254W","ENO1                      ","enolase I (2-phosphoglycerate dehydratase)                                                                                                              ",2,-0.46323,1.15104]
["YGR296W","YRF1-3                    ","strong similarity to YPL283c; YNL339c and other Y' encoded proteins                                                                                   ",4,0.529511,1.29603]
["YHR138C","YHR138C                   ","hypothetical protein                                                                                                                                 ",2,-0.524703,1.44842]
["YIL050W","PCL7                      ","cyclin like protein interacting with PHO85P                                                                                                             ",0,0.447115,1.20463]
["YIL128W","MET18                     ","involved in NER repair and RNA polymerase II transcription                                                                                             ",1,0.470952,1.25386]
["YIL173W","VTH1                      ","strong similarity to VTH2P and PEP1P, potential membrane glycoprotein                                                                                 ",1,-0.429173,1.06559]
["YIR004W","DJP1                      ","DnaJ-like protein involved specifically in peroxisomal protein import                                                                                   ",5,-0.523154,1.17835]
["YJL160C","YJL160C                   ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                      ",3,0.492622,1.2102]
["YJL207C","YJL207C                   ","weak similarity to rat omega-conotoxin-sensitive calcium channel alpha-1 subunit rbB-I                                                               ",3,-0.429371,0.951824]
["YJL225C","YJL225C                   ","strong similarity to members of the SIR1P/TIP1P family                                                                                               ",4,0.482197,1.09069]
["YJR044C","YJR044C                   ","weak similarity to putative transport protein YKR103w                                                                                                ",2,-0.493786,1.29174]
["YLR011W","LOT6                      ","weak similarity to E.coli hypothetical 20.4 kDa protein                                                                                                 ",6,-0.60427,1.44649]
["YLR012C","YLR012C                   ","hypothetical protein                                                                                                                                 ",6,-0.512053,1.04679]
["YLR013W","GAT3                      ","weak similarity to nitrogen regulatory proteins                                                                                                         ",6,-0.482576,0.941828]
["YLR105C","SEN2                      ","tRNA splicing endonuclease beta subunit                                                                                                                 ",6,-0.541512,1.16159]
["YLR207W","HRD3                      ","involved in degradation of HMG2P                                                                                                                        ",3,-0.371746,0.753997]
["YLR346C","YLR346C                   ","weak similarity to YGR035c                                                                                                                           ",3,-0.389734,0.812386]
["YLR406C","RPL31B                    ","60S large subunit ribosomal protein L31.e.c12                                                                                                         ",0,0.305257,0.653611]
["YLR407W","YLR407W                   ","hypothetical protein                                                                                                                                 ",3,-0.416593,0.905162]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",2,-0.51696,1.40772]
["YML111W","BUL2                      ","strong similarity to ubiquitination protein BUL1P                                                                                                       ",0,0.304676,0.651773]
["YMR165C","SMP2                      ","involved in plasmid maintenance, respiration and cell proliferation                                                                                   ",8,-0.406203,0.595008]
["YMR262W","YMR262W                   ","similarity to S.pombe scn1 protein                                                                                                                   ",0,-0.409392,1.03561]
["YNL192W","CHS1                      ","chitin synthase I                                                                                                                                       ",3,0.584718,1.69113]
["YNL269W","YNL269W                   ","hypothetical protein                                                                                                                                 ",2,0.497006,1.30735]
["YNL271C","BNI1                      ","regulator of budding                                                                                                                                    ",2,-0.257191,0.464937]
["YNL324W","YNL324W                   ","hypothetical protein                                                                                                                                 ",5,-0.389489,0.71334]
["YNL326C","YNL326C                   ","similarity to YOL003c, YLR246w and C.elegans hypothetical protein ZK757.1                                                                          ",0,-0.346699,0.792441]
["YNL328C","MDJ2                      ","heat shock protein - chaperone                                                                                                                          ",3,-0.284161,0.506635]
["YNL335W","YNL335W                   ","similarity to M.verrucaria cyanamide hydratase, identical to hypothetical protein YFL061w                                                          ",7,0.4929,0.897033]
["YNL336W","COS1                      ","strong similarity to subtelomeric encoded proteins                                                                                                      ",1,-0.481918,1.30733]
["YOR138C","YOR138C                   ","weak similarity to TRCDSEMBL:AF175293_2 gene: vanSD sensor protein kinase Enterococcus faecium strain vanD glycopeptide resistance gene cluster      ",2,0.444762,1.07208]
["YOR236W","DFR1                      ","dihydrofolate reductase                                                                                                                                 ",2,0.511527,1.37976]
["YPL050C","MNN9                      ","required for complex N-glycosylation                                                                                                                    ",4,-0.486382,1.10767]
["YPL283C","YRF1-7                    ","strong similarity to subtelomeric encoded proteins                                                                                                    ",4,0.499374,1.16178]
["YPR183W","DPM1                      ","dolichyl-phosphate beta-D-mannosyltransferase                                                                                                           ",0,-0.487166,1.40635]
[]
[]
[" The number of regulatory targets of Swi6: 49"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YCR064C","YCR064C                   ","questionable ORF                                                                                                                                     ",8,-0.733564,1.8784]
["YCR065W","HCM1                      ","transcription factor                                                                                                                                    ",2,-0.591501,1.84712]
["YDL003W","MCD1                      ","Mitotic Chromosome Determinant                                                                                                                          ",6,0.748248,2.43765]
["YDL018C","ERP3                      ","weak similarity to DEP1P                                                                                                                                ",7,0.767925,2.38886]
["YDR113C","PDS1                      ","cell cycle regulator                                                                                                                                    ",4,-0.691107,2.31769]
["YDR224C","HTB1                      ","histone H2B                                                                                                                                             ",8,0.780862,2.25354]
["YDR225W","HTA1                      ","histone H2A                                                                                                                                             ",0,0.608647,2.208]
["YDR309C","GIC2                      ","CDC42 GTPase-binding protein                                                                                                                            ",2,-0.608374,1.96362]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",5,-0.727414,2.45513]
["YDR452W","PHM5                      ","similarity to human sphingomyelin phosphodiesterase (PIR:S06957)                                                                                        ",7,-0.72805,2.04959]
["YDR507C","GIN4                      ","ser/thr protein kinase                                                                                                                                  ",2,-0.664983,2.41503]
["YEL040W","UTR2                      ","cell wall protein                                                                                                                                       ",0,-0.557516,1.82941]
["YER001W","MNN1                      ","alpha-1,3-mannosyltransferase                                                                                                                         ",7,0.733587,2.09256]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",2,-0.633168,2.14887]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",1,-0.822847,4.88815]
["YER111C","SWI4                      ","transcription factor                                                                                                                                    ",2,-0.631344,2.13463]
["YGR109C","CLB6                      ","cyclin, B-type                                                                                                                                        ",6,0.758576,2.53819]
["YGR189C","CRH1                      ","family of putative glycosidases might exert a common role in cell wall organization                                                                     ",7,0.714829,1.95162]
["YGR221C","TOS2                      ","similarity to hypothetical protein YHR149c                                                                                                              ",1,-0.584047,1.90788]
["YHR061C","GIC1                      ","CDC42 GTPase-binding protein                                                                                                                            ",0,0.716882,3.31658]
["YHR149C","YHR149C                   ","similarity to hypothetical protein YGR221c                                                                                                           ",6,0.749421,2.44879]
["YHR151C","YHR151C                   ","hypothetical protein                                                                                                                                 ",7,-0.709963,1.9171]
["YIL026C","IRR1                      ","essential protein                                                                                                                                       ",2,-0.661437,2.3836]
["YIL123W","SIM1                      ","involved in cell cycle regulation and aging                                                                                                             ",5,-0.801219,3.30768]
["YJL115W","ASF1                      ","anti-silencing protein                                                                                                                                  ",2,-0.608519,1.96465]
["YJL194W","CDC6                      ","cell division control protein                                                                                                                           ",5,0.716348,2.35438]
["YKL096W","CWP1                      ","cell wall mannoprotein                                                                                                                                  ",6,-0.733982,2.30762]
["YKL113C","RAD27                     ","ssDNA endonuclease and 5'-3'exonuclease                                                                                                                ",6,0.779578,2.7617]
["YKR013W","PRY2                      ","similarity to the plant PR-1 class of pathogen related proteins                                                                                         ",7,0.758661,2.30338]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",6,-0.763503,2.58822]
["YLR056W","ERG3                      ","C-5 sterol desaturase                                                                                                                                   ",0,0.577365,1.96815]
["YLR103C","CDC45                     ","required for minichromosome maintenance and initiation of chromosomal DNA replication                                                                  ",6,0.774638,2.70662]
["YLR332W","MID2                      ","mating process protein                                                                                                                                  ",8,0.81348,2.58128]
["YLR437C","YLR437C                   ","hypothetical protein                                                                                                                                 ",5,-0.63983,1.78131]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",5,-0.811691,3.46328]
["YMR215W","YMR215W                   ","similarity to GAS1 protein                                                                                                                           ",0,0.601194,2.1483]
["YMR261C","TPS3                      ","alpha,alpha-trehalose-phosphate synthase, 115 KD subunit                                                                                              ",6,0.767855,2.63358]
["YMR305C","SCW10                     ","similarity to B.japonicum putative beta-(-6)glucan transferase                                                                                         ",7,0.694889,1.81501]
["YMR306W","FKS3                      ","similarity to 1,3-beta-glucan synthases                                                                                                               ",3,-0.761661,3.27497]
["YNL273W","TOF1                      ","topoisomerase I interacting factor 1                                                                                                                    ",2,-0.634197,2.15695]
["YNL298W","CLA4                      ","ser/thr protein kinase                                                                                                                                  ",0,-0.642995,2.50647]
["YOR074C","CDC21                     ","thymidylate synthase                                                                                                                                   ",7,0.698912,1.84157]
["YOR246C","YOR246C                   ","weak similarity to reductases                                                                                                                        ",0,0.629437,2.3838]
["YOR248W","TOS11                     ","hypothetical protein                                                                                                                                   ",0,0.565256,1.88236]
["YOR372C","NDD1                      ","protein required for nuclear division                                                                                                                   ",4,-0.682499,2.24515]
["YOR373W","NUD1                      ","cell cycle regulatory protein                                                                                                                           ",0,0.560029,1.84645]
["YOR378W","YOR378W                   ","strong similarity to aminotriazole resistance protein                                                                                                ",7,0.843366,3.3106]
["YPL163C","SVS1                      ","vanadate sensitive suppressor                                                                                                                           ",7,0.722693,2.00913]
["YPR075C","OPY2                      ","pheromone resistant yeast 2                                                                                                                             ",8,0.75412,2.02957]
[]
["The number of non-regulatory targets of Swi6: 95"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL029W","YBL029W                   ","hypothetical protein                                                                                                                                 ",4,-0.417584,0.853304]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",5,-0.543895,1.26872]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",2,0.537861,1.51998]
["YDL017W","CDC7                      ","protein kinase                                                                                                                                          ",8,0.591421,1.14228]
["YDL055C","PSA1                      ","mannose-1-phosphate guanyltransferase                                                                                                                   ",5,-0.540552,1.25374]
["YDL101C","DUN1                      ","protein kinase                                                                                                                                          ",6,0.558226,1.23168]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",5,0.609823,1.60151]
["YDR115W","YDR115W                   ","similarity to bacterial ribosomal L34 proteins                                                                                                       ",2,-0.569306,1.70433]
["YDR133C","YDR133C                   ","questionable ORF                                                                                                                                     ",0,0.521223,1.59897]
["YDR263C","DIN7                      ","DNA-damage inducible protein                                                                                                                            ",5,0.298485,0.481101]
["YDR500C","RPL37B                    ","ribosomal protein L.37.e                                                                                                                              ",3,0.451185,1.03554]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",7,0.489772,0.887121]
["YDR509W","YDR509W                   ","questionable ORF                                                                                                                                     ",6,-0.577676,1.31828]
["YDR526C","YDR526C                   ","questionable ORF                                                                                                                                     ",7,-0.563141,1.14628]
["YER079W","YER079W                   ","hypothetical protein                                                                                                                                 ",3,0.382894,0.789844]
["YER094C","PUP3                      ","20S proteasome subunit (beta3)                                                                                                                          ",0,-0.397343,0.985443]
["YER095W","RAD51                     ","DNA repair protein                                                                                                                                     ",2,-0.575209,1.74122]
["YER112W","LSM4                      ","Sm-like (Lsm) protein                                                                                                                                   ",2,-0.386543,0.849127]
["YFR017C","YFR017C                   ","hypothetical protein                                                                                                                                 ",1,-0.461066,1.20715]
["YGL038C","OCH1                      ","alpha-1,6-mannosyltransferase                                                                                                                         ",2,-0.565917,1.68349]
["YGL179C","TOS3                      ","strong similarity to PAK1P, ELM1P and KIN82P                                                                                                          ",2,-0.458631,1.13097]
["YGL239C","YGL239C                   ","questionable ORF                                                                                                                                     ",7,-0.417345,0.680486]
["YGL253W","HXK2                      ","hexokinase II                                                                                                                                           ",5,-0.519583,1.16338]
["YGR013W","SNU71                     ","associated with U1 snRNP, no counterpart in mammalian U1 snRNP                                                                                       ",8,-0.469413,0.750041]
["YGR014W","MSB2                      ","multicopy suppressor of a CDC24 bud emergence defect                                                                                                    ",8,0.698844,1.65564]
["YGR110W","YGR110W                   ","weak similarity to YLR099c and YDR125c                                                                                                               ",0,-0.293452,0.616872]
["YGR180C","RNR4                      ","ribonucleotide reductase small subunit                                                                                                                  ",7,-0.617878,1.38446]
["YGR279C","SCW4                      ","similarity to glucanase                                                                                                                                 ",7,-0.66849,1.65189]
["YHR150W","YHR150W                   ","weak similarity to YDR479c                                                                                                                           ",1,0.374454,0.851292]
["YHR152W","SPO12                     ","sporulation protein                                                                                                                                    ",3,0.4931,1.21234]
["YHR193C","EGD2                      ","alpha subunit of the nascent polypeptide-associated complex                                                                                             ",0,-0.459625,1.265]
["YIL056W","YIL056W                   ","similarity to YER064c                                                                                                                                ",6,-0.610003,1.47575]
["YJL092W","HPR5                      ","ATP-dependent DNA helicase                                                                                                                              ",0,0.519253,1.58724]
["YJL093C","TOK1                      ","outward-rectifier potassium channel                                                                                                                     ",8,0.615697,1.24061]
["YJL116C","NCA3                      ","involved in regulation of synthesis of ATP6P and Atp8p                                                                                                  ",8,-0.593213,1.14926]
["YJL158C","CIS3                      ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                         ",6,-0.617143,1.51307]
["YJL184W","YJL184W                   ","hypothetical protein                                                                                                                                 ",1,0.39048,0.910634]
["YJL185C","YJL185C                   ","hypothetical protein                                                                                                                                 ",8,0.628819,1.29744]
["YJL186W","MNN5                      ","putative mannosyltransferase                                                                                                                            ",0,0.326727,0.723552]
["YJL187C","SWE1                      ","ser/tyr dual-specifity protein kinase                                                                                                                   ",7,0.626316,1.42549]
["YJL196C","ELO1                      ","fatty acid elongation protein                                                                                                                           ",5,0.453141,0.91261]
["YJR044C","YJR044C                   ","weak similarity to putative transport protein YKR103w                                                                                                ",1,-0.323418,0.678991]
["YJR054W","YJR054W                   ","similarity to hypothetical protein YML047c                                                                                                           ",2,-0.565635,1.68177]
["YJR148W","BAT2                      ","branched chain amino acid aminotransferase, cytosolic                                                                                                 ",0,0.315697,0.687103]
["YKL096W-A","CWP2                    ","cell wall mannoprotein                                                                                                                                ",0,0.482352,1.38076]
["YKL097C","YKL097C                   ","hypothetical protein                                                                                                                                 ",4,-0.43714,0.920555]
["YKL112W","ABF1                      ","ARS-binding factor                                                                                                                                      ",4,-0.430241,0.896406]
["YKR011C","TOS5                      ","hypothetical protein                                                                                                                                    ",4,-0.375633,0.720763]
["YKR042W","UTH1                      ","involved in the aging process                                                                                                                           ",7,-0.561162,1.13847]
["YLR055C","SPT8                      ","transcriptional adaptor or co-activator                                                                                                                 ",7,-0.653628,1.56775]
["YLR104W","YLR104W                   ","hypothetical protein                                                                                                                                 ",1,-0.367241,0.825441]
["YLR105C","SEN2                      ","tRNA splicing endonuclease beta subunit                                                                                                                 ",8,-0.561601,1.03217]
["YLR110C","CCW12                     ","strong similarity to FLO1P                                                                                                                             ",0,0.445864,1.19871]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",0,0.545269,1.74847]
["YLR342W","FKS1                      ","1,3-beta-D-glucan synthase, catalytic subunit                                                                                                         ",3,-0.552729,1.50716]
["YLR438W","CAR2                      ","ornithine aminotransferase                                                                                                                              ",8,-0.548863,0.988317]
["YML027W","YOX1                      ","homoeodomain protein                                                                                                                                    ",7,0.647916,1.53673]
["YML100W","TSL1                      ","alpha,alpha-trehalose-phosphate synthase, 123 KD subunit                                                                                              ",1,-0.516443,1.48819]
["YML101C","YML101C                   ","weak similarity to YMR264w                                                                                                                           ",6,0.583508,1.34538]
["YMR016C","SOK2                      ","regulatory protein in the PKA signal transduction pathway                                                                                               ",6,0.435209,0.790919]
["YMR017W","SPO20                     ","DBF2P interacting protein                                                                                                                              ",1,-0.290458,0.579816]
["YMR070W","MOT3                      ","high-copy suppressor of MOT1-SPT3 synthetic lethality                                                                                                   ",7,-0.505805,0.938901]
["YMR076C","PDS5                      ","precocious dissociation of sister chromatids                                                                                                            ",2,-0.515767,1.40154]
["YMR122C","YMR122C                   ","hypothetical protein                                                                                                                                 ",7,-0.650526,1.55082]
["YMR135C","YMR135C                   ","weak similarity to conserved hypothetical protein S. pombe                                                                                           ",0,0.462614,1.27977]
["YMR144W","YMR144W                   ","weak similarity to MLP1P                                                                                                                             ",4,-0.537732,1.33494]
["YMR165C","SMP2                      ","involved in plasmid maintenance, respiration and cell proliferation                                                                                   ",0,-0.382887,0.927498]
["YMR179W","SPT21                     ","required for normal transcription at a number of loci                                                                                                  ",7,0.662369,1.61662]
["YMR199W","CLN1                      ","cyclin, G1/S-specific                                                                                                                                 ",2,-0.558615,1.63942]
["YMR262W","YMR262W                   ","similarity to S.pombe scn1 protein                                                                                                                   ",1,-0.490634,1.35115]
["YMR279C","YMR279C                   ","strong similarity to aminotriazole resistance protein                                                                                                ",0,0.446165,1.20013]
["YMR307W","GAS1                      ","glycophospholipid-anchored surface glycoprotein                                                                                                         ",5,-0.591006,1.49859]
["YNL231C","PDR16                     ","protein involved in lipid biosynthesis and multidrug resistance                                                                                        ",7,0.629416,1.4409]
["YNL241C","ZWF1                      ","glucose-6-phosphate dehydrogenase                                                                                                                       ",7,-0.446744,0.759412]
["YNL274C","YNL274C                   ","similarity to glycerate- and formate-dehydrogenases                                                                                                  ",7,0.543784,1.07204]
["YNL289W","PCL1                      ","cyclin, G1/S-specific                                                                                                                                 ",1,-0.390665,0.911336]
["YNL300W","TOS6                      ","similarity to MID2P                                                                                                                                     ",7,0.680011,1.7208]
["YNL301C","RPL18B                    ","60S large subunit ribosomal protein L18.e                                                                                                             ",4,-0.580668,1.55638]
["YNR009W","YNR009W                   ","hypothetical protein                                                                                                                                 ",4,-0.571095,1.50417]
["YNR018W","YNR018W                   ","similarity to TRCDSEMBL:SPAC1565_1 hypothetical protein S. pombe                                                                                     ",8,0.494357,0.818966]
["YNR044W","AGA1                      ","a-agglutinin anchor subunit                                                                                                                             ",6,0.534599,1.13369]
["YOL113W","SKM1                      ","STE20/PAK-like protein kinase                                                                                                                           ",7,-0.669436,1.65743]
["YOL114C","YOL114C                   ","similarity to human DS-1 protein                                                                                                                     ",0,0.472035,1.32721]
["YOR075W","UFE1                      ","syntaxin (T-SNARE) of the ER                                                                                                                            ",2,-0.344597,0.709617]
["YOR247W","SRL1                      ","similarity to vanadate sensitive suppressor SVS1P                                                                                                       ",0,0.513611,1.55407]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",2,0.466971,1.16758]
["YOR344C","TYE7                      ","basic helix-loop-helix transcription factor                                                                                                             ",4,-0.29229,0.497542]
["YPL024W","NCE4                      ","negative regulator of CTS1 expression                                                                                                                   ",4,-0.366777,0.694658]
["YPL025C","YPL025C                   ","questionable ORF                                                                                                                                     ",1,0.49634,1.38049]
["YPL056C","YPL056C                   ","hypothetical protein                                                                                                                                 ",3,0.558521,1.53899]
["YPL126W","NAN1                      ","weak similarity to fruit fly TFIID subunit p85                                                                                                          ",3,0.476059,1.13776]
["YPL127C","HHO1                      ","histone H1 protein                                                                                                                                      ",0,0.532447,1.66726]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",2,0.559372,1.64394]
["YPR120C","CLB5                      ","cyclin, B-type                                                                                                                                        ",6,0.600634,1.42824]
["YPR159W","KRE6                      ","glucan synthase subunit                                                                                                                                 ",4,-0.53954,1.34364]

{"sheet":"Abf1","index":1,"n_rows":151,"n_cols":6,"rows_kept":151,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Abf1: 144"]
[]
["85 regulatory targets are positively correlated with Abf1 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YPR104C","FHL1                      ","transcriptional activator of the forkhead/hnf3 family                                                                                                   ",0,0.703313,3.14657]
["YIL138C","TPM2                      ","tropomyosin, isoform 2                                                                                                                                ",0,0.674978,2.82467]
["YAL041W","CDC24                     ","GTP/GDP exchange factor for CDC42P                                                                                                                     ",0,0.660621,2.67648]
["YGL222C","EDC1                      ","weak similarity to EDC2                                                                                                                                 ",0,0.589161,2.05536]
["YDR130C","FIN1                      ","weak similarity to sea urchin myosin heavy chain                                                                                                        ",0,0.52432,1.61756]
["YDR296W","MHR1                      ","Involved in mitochondrial homologous DNA recombination                                                                                                  ",0,0.522932,1.60921]
["YNL313C","YNL313C                   ","similarity to C.elegans hypothetical protein                                                                                                         ",0,0.519611,1.58937]
["YKL004W","AUR1                      ","aureobasidin-resistance protein                                                                                                                         ",1,0.837715,5.25059]
["YKL078W","DHR2                      ","RNA helicase, involved in ribosomal RNA maturation                                                                                                    ",1,0.824831,4.93413]
["YMR093W","YMR093W                   ","weak similarity to PWP2P                                                                                                                             ",1,0.819734,4.81738]
["YLR056W","ERG3                      ","C-5 sterol desaturase                                                                                                                                   ",1,0.817751,4.77316]
["YOR309C","YOR309C                   ","questionable ORF                                                                                                                                     ",1,0.81407,4.69272]
["YKL143W","LTV1                      ","low-temperature viability protein                                                                                                                       ",1,0.803279,4.46869]
["YDR361C","BCP1                      ","similarity to hypothetical protein S. pombe                                                                                                             ",1,0.794981,4.30737]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",1,0.790819,4.22974]
["YML081W","YML081W                   ","strong similarity to ZMS1 protein                                                                                                                    ",1,0.76062,3.72304]
["YNL118C","DCP2                      ","suppressor protein of a yeast pet mutant                                                                                                                ",1,0.756276,3.65733]
["YAL042W","ERV46                     ","component of copii vesicles involved in transport between the ER and golgi complex                                                                     ",1,0.751053,3.58044]
["YOR206W","NOC2                      ","crucial for intranuclear movement of ribosomal precursor particles                                                                                      ",1,0.742585,3.46036]
["YKL029C","MAE1                      ","malic enzyme                                                                                                                                            ",1,0.741688,3.44796]
["YGR119C","NUP57                     ","nuclear pore protein                                                                                                                                   ",1,0.734482,3.35047]
["YNR038W","DBP6                      ","RNA helicase required for 60S ribosomal subunit assembly                                                                                                ",1,0.730556,3.29889]
["YLL033W","YLL033W                   ","hypothetical protein                                                                                                                                 ",1,0.72492,3.22663]
["YPR129W","SCD6                      ","suppressor of clathrin deficiency                                                                                                                       ",1,0.724014,3.21522]
["YEL037C","RAD23                     ","nucleotide excision repair protein (ubiquitin-like protein)                                                                                            ",1,0.716627,3.124]
["YJL183W","MNN11                     ","related to MNN10P, and in a complex containing other MNN gene products                                                                               ",1,0.709163,3.03515]
["YGR128C","YGR128C                   ","hypothetical protein                                                                                                                                 ",1,0.702341,2.9567]
["YNL244C","SUI1                      ","translation initiation factor 3 (eIF3)                                                                                                                  ",1,0.697345,2.90083]
["YJR093C","FIP1                      ","component of pre-mRNA polyadenylation factor PF I                                                                                                       ",1,0.685809,2.77668]
["YOR116C","RPO31                     ","DNA-directed RNA polymerase III, 160 KD subunit                                                                                                      ",1,0.675583,2.67193]
["YNL307C","MCK1                      ","ser/thr/tyr protein kinase                                                                                                                              ",1,0.673616,2.65231]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",1,0.661714,2.53715]
["YLL034C","YLL034C                   ","similarity to mammalian valosin                                                                                                                      ",1,0.660799,2.52854]
["YOL077C","BRX1                      ","strong similarity to C.elegans K12H4.3 protein                                                                                                          ",1,0.651012,2.43845]
["YNL116W","YNL116W                   ","weak similarity to RING zinc finger protein from Gallus gallus                                                                                       ",1,0.635577,2.30358]
["YDR326C","YDR326C                   ","strong similarity to YHR080c, similarity to YFL042c and YLR072w                                                                                    ",1,0.587854,1.93457]
["YJL008C","CCT8                      ","component of chaperonin-containing T-complex                                                                                                            ",1,0.584487,1.91094]
["YMR129W","POM152                    ","nuclear pore membrane glycoprotein                                                                                                                    ",1,0.577355,1.86182]
["YNL189W","SRP1                      ","karyopherin-alpha or importin                                                                                                                           ",1,0.570506,1.8158]
["YBL079W","NUP170                    ","nuclear pore protein                                                                                                                                  ",1,0.566538,1.78965]
["YGR056W","RSC1                      ","member of RSC complex, which remodels the structure of chromatin                                                                                      ",1,0.557545,1.7317]
["YDR312W","SSF2                      ","protein with a potential role in mating                                                                                                                 ",1,0.551848,1.6959]
["YNL287W","SEC21                     ","coatomer complex gamma chain (gamma-COP) of secretory pathway vesicles                                                                                 ",1,0.550647,1.68845]
["YNL212W","VID27                     ","weak similarity to C.cardunculus cypro4 protein                                                                                                        ",1,0.542808,1.64051]
["YKR059W","TIF1                      ","translation initiation factor 4A                                                                                                                        ",2,0.789812,3.94774]
["YLR222C","CST29                     ","similarity to DIP2P                                                                                                                                    ",2,0.754948,3.41291]
["YOR056C","YOR056C                   ","weak similarity to human phosphorylation regulatory protein HP-10                                                                                    ",2,0.733497,3.13298]
["YKL172W","EBP2                      ","required for pre-rRNA processing and ribosomal subunit assembly                                                                                         ",2,0.706236,2.81925]
["YKL015W","PUT3                      ","positive activator of the proline utilisation pathway                                                                                                   ",2,0.693551,2.6868]
["YPL012W","YPL012W                   ","hypothetical protein                                                                                                                                 ",2,0.665801,2.42235]
["YBR129C","OPY1                      ","pheromone resistant yeast 1                                                                                                                             ",2,0.566373,1.68628]
["YBR030W","YBR030W                   ","weak similarity to,regulatory protein MSR1P                                                                                                        ",2,0.56228,1.6614]
["YGR129W","SYF2                      ","synthetic lethal with CDC40                                                                                                                             ",2,0.56217,1.66074]
["YMR198W","CIK1                      ","spindle pole body associated protein                                                                                                                    ",2,0.550789,1.5934]
["YIR023W","DAL81                     ","transcriptional activator for allantoin and GABA catabolic genes                                                                                       ",2,0.548883,1.58237]
["YDL208W","NHP2                      ","nucleolar rRNA processing protein                                                                                                                       ",3,0.822702,4.26482]
["YOR310C","NOP58                     ","required for pre-18S rRNA processing                                                                                                                   ",3,0.820603,4.22352]
["YDR463W","STP1                      ","pre-tRNA splicing protein, transcription factor                                                                                                       ",3,0.807987,3.98814]
["YPL036W","PMA2                      ","H+-transporting P-type ATPase, minor isoform, plasma membrane                                                                                         ",3,0.770043,3.38939]
["YNL059C","ARP5                      ","Actin-related protein                                                                                                                                   ",3,0.732139,2.91206]
["YDR404C","RPB7                      ","DNA-directed RNA polymerase II, 19 KD subunit                                                                                                         ",3,0.724703,2.82924]
["YJR063W","RPA12                     ","DNA-directed RNA polymerase I, 13.7 KD subunit                                                                                                       ",3,0.7211,2.79022]
["YNL057W","YNL057W                   ","questionable ORF                                                                                                                                     ",3,0.713915,2.71444]
["YAL043C","PTA1                      ","pre-tRNA processing protein / PF I subunit                                                                                                              ",3,0.712665,2.70153]
["YPL242C","IQG1                      ","involved in cytokinesis, has similarity to mammalian IQGAP proteins                                                                                   ",3,0.70341,2.6083]
["YCL005W","YCL005W                   ","strong similarity to Saccharomyces pastorianus hypothetical protein LgYCL005w                                                                        ",3,0.692719,2.50554]
["YOR057W","SGT1                      ","suppressor of G2 allele of SKP1                                                                                                                         ",3,0.683466,2.42058]
["YKR081C","YKR081C                   ","strong similarity to hypothetical protein S. pombe                                                                                                   ",3,0.682782,2.41444]
["YLR055C","SPT8                      ","transcriptional adaptor or co-activator                                                                                                                 ",3,0.665282,2.2634]
["YBR029C","CDS1                      ","CDP-diacylglycerol synthase                                                                                                                             ",3,0.644365,2.09698]
["YNL255C","GIS2                      ","strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein                                                ",3,0.602586,1.80332]
["YDL116W","NUP84                     ","nuclear pore protein                                                                                                                                   ",3,0.596824,1.76635]
["YDR234W","LYS4                      ","homoaconitase                                                                                                                                           ",3,0.591152,1.7307]
["YNL149C","YNL149C                   ","weak similarity to S.pombe hypothetical protein                                                                                                      ",3,0.574015,1.62729]
["YCL031C","RRP7                      ","involved in pre-rRNA processing and ribosome assembly                                                                                                   ",4,0.697365,2.37223]
["YHR077C","NMD2                      ","nonsense-mediated mRNA decay protein 2                                                                                                                  ",4,0.691532,2.32135]
["YBL039C","URA7                      ","CTP synthase 1                                                                                                                                          ",4,0.680948,2.23237]
["YOR117W","RPT5                      ","26S proteasome regulatory subunit                                                                                                                       ",5,0.644245,1.80957]
["YDR195W","REF2                      ","RNA 3'-end formation protein                                                                                                                            ",5,0.616349,1.6389]
["YNL085W","MKT1                      ","required for propagation of M2 dsRNA satellite of L-A virus                                                                                             ",6,0.771063,2.66777]
["YCL011C","GBP2                      ","potential telomere-associated protein                                                                                                                   ",6,0.63567,1.6147]
["YHR078W","YHR078W                   ","hypothetical protein                                                                                                                                 ",7,0.790555,2.61831]
["YNL312W","RFA2                      ","DNA replication factor A, 36 kDa subunit                                                                                                              ",7,0.780304,2.51048]
["YMR061W","RNA14                     ","component of pre-mRNA 3'-end processing factor CF I                                                                                                    ",7,0.757297,2.29117]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",7,0.715418,1.95585]
[]
[]
["59 regulatory targets are negatively correlated with Abf1 with different time lags"]
["YGR268C","YGR268C                   ","weak similarity to S.pombe hypothetical protein SPAC17A5                                                                                             ",0,-0.570916,1.922]
["YIL037C","PRM2                      ","weak similarity to C. elegans F26G1.6 protease                                                                                                          ",0,-0.715596,3.29998]
["YHR051W","COX6                      ","cytochrome-c oxidase subunit VI                                                                                                                         ",1,-0.54804,1.67236]
["YDL035C","GPR1                      ","G-protein coupled receptor                                                                                                                              ",1,-0.558626,1.73857]
["YGR183C","QCR9                      ","ubiquinol--cytochrome-c reductase subunit 9                                                                                                             ",1,-0.706425,3.00336]
["YDR456W","NHX1                      ","NA+-H+ antiporter                                                                                                                                       ",2,-0.553195,1.60742]
["YPL013C","YPL013C                   ","strong similarity to N.crassa mitochondrial ribosomal protein S24                                                                                    ",2,-0.563089,1.66629]
["YBR109C","CMD1                      ","calmodulin                                                                                                                                              ",2,-0.587292,1.81916]
["YMR092C","AIP1                      ","actin cytoskeleton component                                                                                                                            ",2,-0.61492,2.01083]
["YGR270W","YTA7                      ","26S proteasome subunit                                                                                                                                  ",2,-0.641412,2.21456]
["YMR296C","LCB1                      ","serine C-palmitoyltransferase subunit                                                                                                                   ",2,-0.671603,2.47501]
["YJR127C","ZMS1                      ","transcription factor with similarity to regulatory protein ARD1P                                                                                        ",2,-0.688751,2.63868]
["YPR018W","RLF2                      ","chromatin assembly complex, subunit p90                                                                                                               ",2,-0.711834,2.88028]
["YDL010W","YDL010W                   ","similarity to hypothetical protein YBR014c and glutaredoxins                                                                                         ",3,-0.644907,2.10111]
["YKL007W","CAP1                      ","F-actin capping protein alpha subunit                                                                                                                   ",4,-0.619477,1.78737]
["YNR037C","RSM19                     ","strong similarity to Mycoplasma ribosomal protein S19                                                                                                  ",4,-0.632801,1.87471]
["YAL053W","YAL053W                   ","strong similarity to hypothetical proteins YOR365c,YGL139w,YPL221w                                                                                 ",4,-0.634983,1.88944]
["YMR297W","PRC1                      ","carboxypeptidase y, serine-type protease                                                                                                              ",4,-0.643132,1.94562]
["YNL322C","KRE1                      ","cell wall protein                                                                                                                                       ",4,-0.659921,2.06735]
["YKL005C","YKL005C                   ","weak similarity to YKR029c and D.melanogaster transcription elongation factor DmS-II                                                                 ",4,-0.666702,2.11896]
["YAL023C","PMT2                      ","mannosyltransferase                                                                                                                                     ",4,-0.666868,2.12024]
["YJL201W","ECM25                     ","involved in cell wall biogenesis and architecture                                                                                                      ",4,-0.678171,2.20971]
["YML012W","ERV25                     ","component of the COPII-coated vesicles, 25 Kda                                                                                                       ",4,-0.713665,2.52197]
["YPL159C","YPL159C                   ","weak similarity to YPR151c                                                                                                                           ",5,-0.664404,1.94521]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",5,-0.676588,2.03289]
["YHR115C","YHR115C                   ","strong similarity to hypothetical protein YNL116w                                                                                                    ",6,-0.640554,1.64271]
["YNL119W","YNL119W                   ","weak similarity to M.jannaschii hypothetical protein MJ1257                                                                                          ",6,-0.647363,1.68267]
["YCR003W","MRPL32                    ","ribosomal protein YmL32, mitochondrial                                                                                                              ",6,-0.647482,1.68338]
["YDL193W","YDL193W                   ","similarity to N.crassa hypothetical 32 kDa protein                                                                                                   ",6,-0.673545,1.84704]
["YAL054C","ACS1                      ","acetyl-CoA synthetase                                                                                                                                   ",6,-0.683474,1.91426]
["YIL135C","YIL135C                   ","similarity to Ymk1p                                                                                                                                  ",6,-0.707264,2.08791]
["YLR229C","CDC42                     ","GTP-binding protein of RAS superfamily                                                                                                                 ",6,-0.708769,2.09955]
["YKL167C","MRP49                     ","ribosomal protein, mitochondrial                                                                                                                     ",6,-0.7372,2.33611]
["YDR233C","YDR233C                   ","similarity to hypothetical protein YDL204w                                                                                                           ",6,-0.754428,2.49712]
["YMR197C","VTI1                      ","v-SNARE: involved in Golgi retrograde protein traffic                                                                                                   ",6,-0.754922,2.50197]
["YDR384C","YDR384C                   ","strong similarity to Y.lipolytica GPR1 gene                                                                                                          ",6,-0.75788,2.53123]
["YHR116W","YHR116W                   ","weak similarity to TRCDSEMBLNEW:AE003592_6 CG4186 D. melanogaster                                                                                    ",6,-0.758249,2.53491]
["YEL017W","YEL017W                   ","hypothetical protein                                                                                                                                 ",6,-0.760001,2.55252]
["YJL174W","KRE9                      ","cell wall synthesis protein                                                                                                                             ",6,-0.766511,2.61946]
["YHR162W","YHR162W                   ","strong similarity to hypothetical protein YGR243w                                                                                                    ",6,-0.77677,2.7302]
["YNL306W","MRPS18                    ","ribosomal protein of the small subunit, mitochondrial                                                                                               ",6,-0.794281,2.9359]
["YNR046W","YNR046W                   ","strong similarity to S.pombe hypothetical protein SPAC31A2.02                                                                                        ",6,-0.834361,3.50891]
["YOR205C","YOR205C                   ","hypothetical protein                                                                                                                                 ",6,-0.841278,3.62641]
["YOL036W","YOL036W                   ","weak similarity to YMR317w                                                                                                                           ",6,-0.85401,3.86123]
["YPR128C","YPR128C                   ","similarity to carrier protein FLX1                                                                                                                   ",6,-0.878584,4.39999]
["YOR045W","TOM6                      ","mitochondrial outer membrane import receptor subunit, 6 kD                                                                                            ",6,-0.887473,4.63077]
["YJL111W","CCT7                      ","component of chaperonin-containing T-complex                                                                                                            ",7,-0.668013,1.64911]
["YKL028W","TFA1                      ","TFIIE subunit (transcription initiation factor), 66 kD                                                                                                ",8,-0.678375,1.53998]
["YDL189W","YDL189W                   ","weak similarity to 'KIAA1002'; H. sapiens                                                                                                            ",8,-0.692685,1.61974]
["YGR253C","PUP2                      ","20S proteasome subunit(alpha5)                                                                                                                          ",8,-0.693201,1.62271]
["YFL048C","EMP47                     ","Golgi membrane protein                                                                                                                                 ",8,-0.715846,1.76013]
["YMR260C","TIF11                     ","translation initiation factor eIF1a                                                                                                                    ",8,-0.753004,2.02094]
["YOR261C","RPN8                      ","26S proteasome regulatory subunit                                                                                                                       ",8,-0.761868,2.09101]
["YNL037C","IDH1                      ","isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial                                                                                              ",8,-0.78168,2.26096]
["YKR030W","YKR030W                   ","weak similarity to NADH dehydrogenases                                                                                                               ",8,-0.788956,2.32858]
["YCR082W","YCR082W                   ","weak similarity to RBK1P                                                                                                                             ",8,-0.812643,2.57195]
["YNL036W","NCE103                    ","involved in non-classical protein export pathway                                                                                                      ",8,-0.81544,2.60335]
["YDR280W","RRP45                     ","rRNA processing protein                                                                                                                                ",8,-0.898212,3.964]
["YPR187W","RPO26                     ","DNA-directed RNA polymerase I, II, III 18 KD subunit                                                                                                 ",8,-0.902004,4.05876]

{"sheet":"Ace2","index":2,"n_rows":51,"n_cols":6,"rows_kept":51,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Ace2: 44"]
[]
["23 regulatory targets are positively correlated with Ace2 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YDR011W","SNQ2                      ","multidrug resistance protein                                                                                                                            ",0,0.602786,2.16091]
["YGL008C","PMA1                      ","H+-transporting P-type ATPase, major isoform, plasma membrane                                                                                         ",1,0.790455,4.22304]
["YBR057C","MUM2                      ","meiotic protein                                                                                                                                         ",1,0.64788,2.4104]
["YER126C","KRE32                     ","weak similarity to E.coli colicin N                                                                                                                    ",1,0.608706,2.08762]
["YNL078W","JIP1                      ","hypothetical protein                                                                                                                                    ",3,0.800678,3.86102]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",3,0.710617,2.68054]
["YJL159W","HSP150                    ","member of the PIR1P/HSP150P/PIR3P family                                                                                                              ",3,0.675124,2.34693]
["YBL023C","MCM2                      ","member of the MCM2P,MCM3P,CDC46P family                                                                                                               ",3,0.673342,2.33155]
["YMR261C","TPS3                      ","alpha,alpha-trehalose-phosphate synthase, 115 KD subunit                                                                                              ",3,0.632002,2.00507]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",3,0.631337,2.00025]
["YEL007W","TOS9                      ","similarity to S.pombe PAC2 protein                                                                                                                      ",3,0.607617,1.83625]
["YHL029C","YHL029C                   ","hypothetical protein                                                                                                                                 ",3,0.595098,1.75542]
["YGL229C","SAP4                      ","SIT4P-associated protein                                                                                                                                ",3,0.580629,1.66646]
["YBR158W","CST13                     ","weak similarity to TRCDSEMBL:AF176518_1 F-box protein FBL2; human                                                                                      ",4,0.867957,4.95289]
["YJL078C","PRY3                      ","strong similarity to the plant PR-1 class of pathogen related proteins                                                                                  ",4,0.785619,3.35717]
["YGL028C","SCW11                     ","similarity to glucanase                                                                                                                                ",4,0.782443,3.31262]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",4,0.723965,2.62283]
["YML100W","TSL1                      ","alpha,alpha-trehalose-phosphate synthase, 123 KD subunit                                                                                              ",4,0.652305,2.01109]
["YLR286C","CTS1                      ","endochitinase                                                                                                                                           ",5,0.836085,3.87484]
["YER124C","YER124C                   ","weak similarity to Dictyostelium WD40 repeat protein 2                                                                                               ",5,0.796238,3.23744]
["YHR143W","YHR143W                   ","weak similarity to a-agglutinin core protein AGA1                                                                                                    ",6,0.813994,3.19731]
["YJR147W","HMS2                      ","High-copy MEP2 Suppressor                                                                                                                               ",7,0.68144,1.72958]
["YER125W","RSP5                      ","hect domain E3 ubiquitin-protein ligase                                                                                                                 ",8,0.788321,2.32256]
[]
[]
["21 regulatory targets are negatively correlated with Ace2 with different time lags"]
["YNL098C","RAS2                      ","GTP-binding protein                                                                                                                                     ",0,-0.553311,1.80124]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",0,-0.572834,1.93562]
["YMR262W","YMR262W                   ","similarity to S.pombe scn1 protein                                                                                                                   ",0,-0.620221,2.30412]
["YJR044C","YJR044C                   ","weak similarity to putative transport protein YKR103w                                                                                                ",1,-0.536124,1.60063]
["YJR149W","YJR149W                   ","similarity to 2-nitropropane dioxygenase                                                                                                             ",3,-0.635653,2.03175]
["YML004C","GLO1                      ","glyoxalase I                                                                                                                                            ",3,-0.68948,2.4754]
["YER081W","SER3                      ","3-phosphoglycerate dehydrogenase                                                                                                                        ",3,-0.856768,5.04137]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",5,-0.634969,1.75075]
["YGR283C","YGR283C                   ","similarity to hypothetical protein YMR310c                                                                                                           ",5,-0.645543,1.81797]
["YJL075C","YJL075C                   ","questionable ORF                                                                                                                                     ",5,-0.650478,1.85033]
["YML008C","ERG6                      ","S-adenosyl-methionine delta-24-sterol-c-methyltransferase                                                                                               ",5,-0.653558,1.87085]
["YGL007W","YGL007W                   ","questionable ORF                                                                                                                                     ",5,-0.668914,1.97714]
["YKL084W","YKL084W                   ","strong similarity to S.pombe hypothetical protein SPAC29B12                                                                                          ",5,-0.696982,2.19047]
["YGL133W","ITC1                      ","subunit of ISW2 chromatin remodelling complex                                                                                                           ",6,-0.627567,1.56937]
["YHR091C","MSR1                      ","arginyl-tRNA synthetase, mitochondrial                                                                                                                ",6,-0.670527,1.82717]
["YNL241C","ZWF1                      ","glucose-6-phosphate dehydrogenase                                                                                                                       ",6,-0.714202,2.14225]
["YDR158W","HOM2                      ","aspartate-semialdehyde dehydrogenase                                                                                                                    ",6,-0.753024,2.48344]
["YML007W","YAP1                      ","transcriptional activator involved in oxidative stress response                                                                                         ",6,-0.76701,2.62469]
["YKR042W","UTH1                      ","involved in the aging process                                                                                                                           ",6,-0.907815,5.2599]
["YGL228W","SHE10                     ","similarity to hypothetical protein YFR039c                                                                                                             ",7,-0.656759,1.58505]
["YML101C","YML101C                   ","weak similarity to YMR264w                                                                                                                           ",8,-0.723754,1.81165]

{"sheet":"Cin5","index":3,"n_rows":76,"n_cols":6,"rows_kept":76,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Cin5: 69"]
[]
["35 regulatory targets are positively correlated with Cin5 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YKL044W","YKL044W                   ","hypothetical protein                                                                                                                                 ",0,0.76703,4.05933]
["YGR178C","PBP1                      ","PAB1P interacting protein                                                                                                                               ",0,0.737397,3.59654]
["YEL011W","GLC3                      ","1,4-glucan branching enzyme (glycogen branching enzyme)                                                                                               ",0,0.736531,3.58411]
["YDR343C","HXT6                      ","high-affinity hexose transporter                                                                                                                        ",0,0.624506,2.34081]
["YIL172C","YIL172C                   ","identical to FSP2P and similarity to other alpha-glucosidases                                                                                        ",0,0.55888,1.83864]
["YIL170W","HXT12                     ","strong similarity to sugar transport proteins                                                                                                          ",0,0.555638,1.81678]
["YCL024W","KCC4                      ","kinase coordinate cell cycle progression with the organization of the peripheralcytoskeleton                                                            ",1,0.716725,3.12518]
["YDL169C","UGX2                      ","hypothetical protein                                                                                                                                    ",1,0.634709,2.29625]
["YIL171W","HXT12                     ","strong similarity to sugar transport proteins                                                                                                          ",1,0.630242,2.25889]
["YBR071W","YBR071W                   ","hypothetical protein                                                                                                                                 ",1,0.61002,2.09767]
["YJL219W","HXT9                      ","hexose transport protein                                                                                                                                ",1,0.60883,2.08857]
["YPL061W","ALD6                      ","aldehyde dehydrogenase, cytosolic                                                                                                                     ",1,0.584085,1.90814]
["YKR066C","CCP1                      ","cytochrome-c peroxidase precursor                                                                                                                       ",1,0.570552,1.81611]
["YDR508C","GNP1                      ","high-affinity glutamine permease                                                                                                                        ",1,0.568421,1.80202]
["YLR121C","YPS3                      ","GPI-anchored aspartyl protease 3 (yapsin 3)                                                                                                             ",2,0.664954,2.41477]
["YOR317W","FAA1                      ","long-chain-fatty-acid--CoA ligase                                                                                                                       ",2,0.616256,2.02061]
["YLR081W","GAL2                      ","galactose (and glucose) permease                                                                                                                        ",3,0.665548,2.26561]
["YPR159W","KRE6                      ","glucan synthase subunit                                                                                                                                 ",3,0.646473,2.11311]
["YKL103C","LAP4                      ","aminopeptidase yscI precursor, vacuolar                                                                                                               ",3,0.639915,2.06337]
["YBR007C","YBR007C                   ","hypothetical protein                                                                                                                                 ",3,0.622453,1.93708]
["YLR332W","MID2                      ","mating process protein                                                                                                                                  ",4,0.619067,1.78475]
["YBL030C","PET9                      ","ADP/ATP carrier protein (MCF)                                                                                                                           ",5,0.784304,3.07813]
["YGR192C","TDH3                      ","glyceraldehyde-3-phosphate dehydrogenase 3                                                                                                              ",5,0.764332,2.83636]
["YJL171C","YJL171C                   ","similarity to YBR162c                                                                                                                                ",5,0.751627,2.69651]
["YOR302W","YOR302W                   ","CPA1 leader peptide                                                                                                                                  ",5,0.750719,2.68688]
["YOL060C","AMI3                      ","similarity to hypothetical C.elegans and A.thaliana proteins                                                                                            ",5,0.706893,2.27249]
["YGR171C","MSM1                      ","methionyl-tRNA synthetase                                                                                                                               ",5,0.648112,1.83474]
["YOL059W","GPD2                      ","glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial                                                                                              ",5,0.638407,1.77231]
["YOR303W","CPA1                      ","arginine-specific carbamoylphosphate synthase, small chain                                                                                            ",5,0.625014,1.68996]
["YOR306C","YOR306C                   ","similarity to human X-linked PEST-containing transporter                                                                                             ",6,0.654675,1.72682]
["YOR049C","YOR049C                   ","similarity to YER185w, RTA1P                                                                                                                       ",7,0.807376,2.81133]
["YLL006W","MMM1                      ","required for mitochondrial shape and structure                                                                                                          ",7,0.725333,2.02893]
["YIR001C","SGN1                      ","similarity to D.melanogaster RNA binding protein                                                                                                        ",8,0.752176,2.01456]
["YJR132W","NMD5                      ","NAM7P interacting protein                                                                                                                               ",8,0.719598,1.78434]
["YJR061W","YJR061W                   ","similarity to MNN4P                                                                                                                                  ",8,0.701558,1.67178]
[]
[]
["69 regulatory targets are negatively correlated with Cin5 with different time lags"]
["YPR124W","CTR1                      ","copper transport protein                                                                                                                                ",0,-0.547274,1.76149]
["YJL077C","ICS3                      ","hypothetical protein                                                                                                                                    ",0,-0.567902,1.9008]
["YMR319C","FET4                      ","low affinity Fe(II) iron transport protein                                                                                                              ",0,-0.575134,1.95206]
["YFL004W","VTC2                      ","putative polyphosphate synthetase                                                                                                                       ",0,-0.581054,1.99502]
["YDR301W","CFT1                      ","pre-mRNA 3'-end processing factor CF II                                                                                                                 ",0,-0.606804,2.19308]
["YLL052C","AQY2                      ","strong similarity to AQY1                                                                                                                               ",0,-0.669141,2.76331]
["YLL054C","YLL054C                   ","similarity to transcription factor PIP2P                                                                                                             ",0,-0.83333,5.46518]
["YOR178C","GAC1                      ","ser/thr phosphoprotein phosphatase 1, regulatory chain                                                                                                ",1,-0.578198,1.86756]
["YGR035C","YGR035C                   ","hypothetical protein                                                                                                                                 ",1,-0.628352,2.24327]
["YNL087W","YNL087W                   ","weak similarity to synaptogamines                                                                                                                    ",1,-0.655327,2.47772]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",1,-0.659938,2.52046]
["YIL118W","RHO3                      ","GTP-binding protein of the rho family                                                                                                                   ",1,-0.715583,3.11137]
["YLL061W","MMP1                      ","high affinity S-methylmethionine permease                                                                                                               ",2,-0.623321,2.07317]
["YLL007C","YLL007C                   ","hypothetical protein                                                                                                                                 ",2,-0.627565,2.10544]
["YLR034C","SMF3                      ","strong similarity to SMF2 protein and S.pombe hypothetical protein                                                                                      ",2,-0.64524,2.2458]
["YJR094C","IME1                      ","transcription factor required for sporulation                                                                                                           ",2,-0.648051,2.26906]
["YJR003C","YJR003C                   ","hypothetical protein                                                                                                                                 ",2,-0.660419,2.37466]
["YML116W","ATR1                      ","aminotriazole and 4-nitroquinoline resistance protein                                                                                                   ",2,-0.821504,4.54985]
["YKR067W","GPT2                      ","strong similarity to SCT1P                                                                                                                              ",4,-0.651696,2.00667]
["YBR054W","YRO2                      ","strong similarity to HSP30 heat shock protein Yro1p                                                                                                     ",4,-0.682178,2.2425]
["YNL145W","MFA2                      ","mating pheromone a-factor 2                                                                                                                             ",4,-0.715617,2.5407]
["YJR158W","HXT16                     ","member of the hexose transporter family of the major facilitator superfamily [MFS]                                                                     ",5,-0.623049,1.67823]
["YIL119C","RPI1                      ","negative regulator of ras-cAMP pathway                                                                                                                  ",5,-0.63628,1.75894]
["YDR338C","YDR338C                   ","similarity to ERC1P                                                                                                                                  ",5,-0.689308,2.12948]
["YDR504C","YDR504C                   ","similarity to hypothetical T.brucei protein                                                                                                          ",5,-0.693517,2.16267]
["YGR249W","MGA1                      ","similarity to heat shock transcription factors                                                                                                          ",5,-0.737515,2.55213]
["YJR146W","YJR146W                   ","questionable ORF                                                                                                                                     ",6,-0.665152,1.7924]
["YMR177W","MMT1                      ","mitochondrial gene involved in iron uptake                                                                                                              ",6,-0.669757,1.82214]
["YMR246W","FAA4                      ","long-chain-fatty-acid--CoA ligase                                                                                                                       ",6,-0.692634,1.97893]
["YOR230W","WTM1                      ","transcriptional modulator                                                                                                                               ",6,-0.701143,2.04142]
["YDR441C","APT2                      ","adenine phosphoribosyltransferase                                                                                                                       ",6,-0.754539,2.49821]
["YDR345C","HXT3                      ","low-affinity hexose transporter                                                                                                                         ",6,-0.775734,2.71871]
["YBR070C","SAT2                      ","osmotolerance protein                                                                                                                                   ",7,-0.793679,2.65258]
["YGL253W","HXK2                      ","hexokinase II                                                                                                                                           ",8,-0.719172,1.78156]

{"sheet":"Fkh1","index":4,"n_rows":103,"n_cols":6,"rows_kept":103,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Fkh1: 96"]
[]
["62 regulatory targets are positively correlated with Fkh1 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YBL082C","RHK1                      ","mannosyltransferase                                                                                                                                     ",0,0.866914,6.50198]
["YNL176C","YNL176C                   ","weak similarity to HKR1P                                                                                                                             ",0,0.839828,5.64301]
["YER032W","FIR1                      ","interacts with the poly(A) polymerase in the two hybrid system                                                                                          ",0,0.832236,5.43615]
["YMR215W","YMR215W                   ","similarity to GAS1 protein                                                                                                                           ",0,0.796496,4.60725]
["YDR107C","YDR107C                   ","strong similarity to EMP70 protein                                                                                                                   ",0,0.791589,4.50878]
["YDR325W","YCG1                      ","Yeast Condensin G                                                                                                                                       ",0,0.766845,4.0562]
["YCL063W","YCL063W                   ","weak similarity to yeast translation regulator GCD6P                                                                                                 ",0,0.761109,3.96058]
["YFL037W","TUB2                      ","beta-tubulin                                                                                                                                            ",0,0.751243,3.80329]
["YNL174W","YNL174W                   ","hypothetical protein                                                                                                                                 ",0,0.73348,3.54077]
["YPL227C","ALG5                      ","dolichol-P-glucose synthetase                                                                                                                           ",0,0.717452,3.32397]
["YGR098C","ESP1                      ","required for sister chromatid separation                                                                                                                ",0,0.708066,3.20485]
["YCL064C","CHA1                      ","L-serine/L-threonine deaminase                                                                                                                          ",0,0.686583,2.9515]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",0,0.675874,2.83424]
["YPR104C","FHL1                      ","transcriptional activator of the forkhead/hnf3 family                                                                                                   ",0,0.637896,2.45955]
["YBL056W","PTC3                      ","ser/thr protein phosphatase PP2C                                                                                                                        ",0,0.613185,2.24517]
["YER122C","GLO3                      ","zinc finger protein                                                                                                                                     ",0,0.589777,2.06002]
["YKL096W-A","CWP2                    ","cell wall mannoprotein                                                                                                                                ",0,0.578403,1.97567]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",0,0.565073,1.88109]
["YPL116W","HOS3                      ","similarity to HOS1P, HOS2P, HOS3P, RPD3P and human histone deacetylase HD1                                                                            ",0,0.519593,1.58926]
["YJR092W","BUD4                      ","budding protein                                                                                                                                         ",1,0.849614,5.57392]
["YPL155C","KIP2                      ","kinesin-related protein                                                                                                                                 ",1,0.791501,4.24233]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",1,0.79148,4.24192]
["YPL141C","YPL141C                   ","strong similarity to protein kinase KIN4P                                                                                                            ",1,0.768988,3.85434]
["YMR183C","SSO2                      ","syntaxin (T-SNARE)                                                                                                                                      ",1,0.764238,3.77902]
["YIL158W","YIL158W                   ","similarity to hypothetical protein YKR100c                                                                                                           ",1,0.745609,3.50261]
["YKL069W","YKL069W                   ","strong similarity to hypothetical E.coli protein b1832                                                                                               ",1,0.703522,2.9701]
["YKR055W","RHO4                      ","GTP-binding protein of the rho family                                                                                                                   ",1,0.676052,2.67662]
["YKR059W","TIF1                      ","translation initiation factor 4A                                                                                                                        ",1,0.614828,2.13487]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",1,0.590085,1.95039]
["YOL114C","YOL114C                   ","similarity to human DS-1 protein                                                                                                                     ",1,0.560786,1.75237]
["YPL226W","NEW1                      ","similarity to translation elongation factor eEF3                                                                                                        ",1,0.522207,1.52037]
["YPL140C","MKK2                      ","protein kinase of the map kinase kinase (MEK) family                                                                                                    ",1,0.521711,1.51758]
["YLR131C","ACE2                      ","metallothionein expression activator                                                                                                                    ",2,0.807784,4.27287]
["YGL257C","MNT2                      ","alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides                                      ",2,0.750424,3.35113]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",2,0.732201,3.11707]
["YDR324C","YDR324C                   ","weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins                                                          ",2,0.715891,2.92555]
["YGL116W","CDC20                     ","cell division control protein                                                                                                                          ",2,0.709153,2.85085]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",2,0.694636,2.69782]
["YGR171C","MSM1                      ","methionyl-tRNA synthetase                                                                                                                               ",2,0.632924,2.14696]
["YER031C","YPT31                     ","GTP-binding protein of the rab family                                                                                                                  ",2,0.616471,2.02219]
["YKR054C","DYN1                      ","dynein heavy chain, cytosolic                                                                                                                         ",2,0.607786,1.95944]
["YJR091C","JSN1                      ","suppresses the high-temperature lethality of TUB2-150                                                                                                   ",2,0.599785,1.90341]
["YLR353W","BUD8                      ","budding protein                                                                                                                                         ",2,0.596557,1.88127]
["YBR029C","CDS1                      ","CDP-diacylglycerol synthase                                                                                                                             ",2,0.59628,1.87938]
["YDR108W","GSG1                      ","sporulation specific protein                                                                                                                            ",2,0.567004,1.69015]
["YHR200W","RPN10                     ","26S proteasome regulatory subunit                                                                                                                      ",2,0.535163,1.50505]
["YNL145W","MFA2                      ","mating pheromone a-factor 2                                                                                                                             ",4,0.810277,3.73619]
["YOR312C","RPL20B                    ","60S large subunit ribosomal protein                                                                                                                   ",4,0.682575,2.24577]
["YHR117W","TOM71                     ","protein with similarity to TOM70P/Mas70p                                                                                                               ",4,0.672303,2.16271]
["YBL057C","YBL057C                   ","strong similarity to hypothetical S.pombe protein                                                                                                    ",4,0.667476,2.12494]
["YLR406C","RPL31B                    ","60S large subunit ribosomal protein L31.e.c12                                                                                                         ",4,0.583789,1.57378]
["YML100W","TSL1                      ","alpha,alpha-trehalose-phosphate synthase, 123 KD subunit                                                                                              ",5,0.677141,2.03697]
["YHR119W","SET1                      ","involved in chromatin-mediated gene regulation                                                                                                          ",5,0.620983,1.666]
["YGL028C","SCW11                     ","similarity to glucanase                                                                                                                                ",6,0.861575,4.01376]
["YHR143W","YHR143W                   ","weak similarity to a-agglutinin core protein AGA1                                                                                                    ",6,0.840502,3.61289]
["YER124C","YER124C                   ","weak similarity to Dictyostelium WD40 repeat protein 2                                                                                               ",6,0.833891,3.50117]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",6,0.805694,3.08297]
["YHR084W","STE12                     ","transcriptional activator                                                                                                                              ",6,0.78249,2.79495]
["YHR094C","HXT1                      ","low-affinity hexose transporter                                                                                                                         ",6,0.62808,1.5722]
["YPR035W","GLN1                      ","glutamate--ammonia ligase                                                                                                                               ",7,0.776819,2.47534]
["YPL032C","SVL3                      ","strong similarity to PAM1P                                                                                                                              ",8,0.859877,3.20426]
["YFR051C","RET2                      ","coatomer complex delta chain                                                                                                                            ",8,0.78269,2.27017]
[]
[]
["34 regulatory targets are negatively correlated with Fkh1 with different time lags"]
["YOR358W","HAP5                      ","CCAAT-binding factor subunit                                                                                                                            ",0,-0.709338,3.22068]
["YDR085C","AFR1                      ","involved in morphogenesis of the mating projection                                                                                                      ",1,-0.556557,1.72544]
["YDL017W","CDC7                      ","protein kinase                                                                                                                                          ",1,-0.582963,1.90034]
["YDL018C","ERP3                      ","weak similarity to DEP1P                                                                                                                                ",1,-0.631025,2.26539]
["YDR003W","YDR003W                   ","strong similarity to hypothetical protein YBR005w                                                                                                    ",1,-0.635934,2.30661]
["YKL157W","APE2                      ","aminopeptidase yscII                                                                                                                                    ",2,-0.5629,1.66515]
["YPR075C","OPY2                      ","pheromone resistant yeast 2                                                                                                                             ",2,-0.56667,1.6881]
["YMR078C","CTF18                     ","required for accurate chromosome transmission in mitosis and maintenance of normal telomere length                                                     ",2,-0.600341,1.90725]
["YGR270W","YTA7                      ","26S proteasome subunit                                                                                                                                  ",3,-0.54549,1.46824]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",3,-0.584328,1.68876]
["YBR109C","CMD1                      ","calmodulin                                                                                                                                              ",3,-0.592455,1.73882]
["YGR099W","TEL2                      ","involved in controlling telomere length and position effect                                                                                             ",3,-0.647048,2.11754]
["YMR076C","PDS5                      ","precocious dissociation of sister chromatids                                                                                                            ",3,-0.669948,2.30256]
["YHR183W","GND1                      ","6-phosphogluconate dehydrogenase                                                                                                                        ",3,-0.690029,2.48047]
["YCR075C","ERS1                      ","intracellular protein transport protein                                                                                                                 ",3,-0.714432,2.7198]
["YMR144W","YMR144W                   ","weak similarity to MLP1P                                                                                                                             ",3,-0.847376,4.80472]
["YLR407W","YLR407W                   ","hypothetical protein                                                                                                                                 ",4,-0.611981,1.74015]
["YER125W","RSP5                      ","hect domain E3 ubiquitin-protein ligase                                                                                                                 ",4,-0.742342,2.81634]
["YMR198W","CIK1                      ","spindle pole body associated protein                                                                                                                    ",5,-0.660246,1.91631]
["YGR050C","YGR050C                   ","questionable ORF                                                                                                                                     ",5,-0.689167,2.12839]
["YOR357C","GRD19                     ","weak similarity to human sorting nexin 1                                                                                                               ",5,-0.712374,2.31951]
["YMR197C","VTI1                      ","v-SNARE: involved in Golgi retrograde protein traffic                                                                                                   ",5,-0.713975,2.33348]
["YMR184W","YMR184W                   ","hypothetical protein                                                                                                                                 ",5,-0.732573,2.50405]
["YNR046W","YNR046W                   ","strong similarity to S.pombe hypothetical protein SPAC31A2.02                                                                                        ",5,-0.734027,2.51807]
["YLR209C","PNP1                      ","strong similarity to purine-nucleoside phosphorylases                                                                                                   ",5,-0.736721,2.54432]
["YBL083C","YBL083C                   ","questionable ORF                                                                                                                                     ",5,-0.743276,2.60976]
["YPL139C","UME1                      ","negative regulator of meiosis                                                                                                                           ",5,-0.814113,3.5009]
["YOL030W","YOL030W                   ","strong similarity to glycoprotein GAS1P                                                                                                              ",5,-0.817293,3.55131]
["YNL091W","YNL091W                   ","similarity to chicken h-caldesmon, USO1P and YKL201c                                                                                               ",6,-0.74283,2.38712]
["YGR092W","DBF2                      ","ser/thr protein kinase related to DBF20P                                                                                                                ",7,-0.874455,3.8803]
["YFL038C","YPT1                      ","GTP-binding protein of the rab family                                                                                                                   ",8,-0.671841,1.50516]
["YBR139W","YBR139W                   ","strong similarity to carboxypeptidase                                                                                                                ",8,-0.713938,1.74799]
["YFR004W","RPN11                     ","26S proteasome regulatory subunit                                                                                                                      ",8,-0.74199,1.93841]
["YBR110W","ALG1                      ","beta-mannosyltransferase                                                                                                                                ",8,-0.742617,1.94298]

{"sheet":"Fkh2","index":5,"n_rows":97,"n_cols":6,"rows_kept":97,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Fkh2: 90"]
[]
["60 regulatory targets are positively correlated with Fkh1 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YMR215W","YMR215W                   ","similarity to GAS1 protein                                                                                                                           ",0,0.930737,9.9346]
["YIL123W","SIM1                      ","involved in cell cycle regulation and aging                                                                                                             ",0,0.859267,6.23763]
["YBL032W","YBL032W                   ","weak similarity to hnRNP complex protein homolog YBR233w                                                                                             ",0,0.841831,5.69978]
["YOR246C","YOR246C                   ","weak similarity to reductases                                                                                                                        ",0,0.821052,5.1531]
["YHR031C","RRM3                      ","DNA helicase involved in rDNA replication and Ty1 transposition                                                                                         ",0,0.783976,4.36204]
["YJL158C","CIS3                      ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                         ",0,0.779412,4.27741]
["YDR147W","EKI1                      ","ethanolamine kinase                                                                                                                                     ",0,0.759177,3.92908]
["YNL174W","YNL174W                   ","hypothetical protein                                                                                                                                 ",0,0.706685,3.18778]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",0,0.70389,3.15358]
["YPL116W","HOS3                      ","similarity to HOS1P, HOS2P, HOS3P, RPD3P and human histone deacetylase HD1                                                                            ",0,0.681383,2.89385]
["YNL172W","APC1                      ","subunit of anaphase-promoting complex (cyclosome)                                                                                                       ",0,0.679469,2.87297]
["YBR135W","CKS1                      ","cyclin-dependent kinases regulatory subunit                                                                                                             ",0,0.653325,2.60459]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",0,0.620227,2.30417]
["YNL176C","YNL176C                   ","weak similarity to HKR1P                                                                                                                             ",0,0.562551,1.86369]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",0,0.552997,1.79915]
["YPL155C","KIP2                      ","kinesin-related protein                                                                                                                                 ",1,0.956836,12.0157]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",1,0.947246,10.833]
["YJR092W","BUD4                      ","budding protein                                                                                                                                         ",1,0.939792,10.0851]
["YJL051W","YJL051W                   ","hypothetical protein                                                                                                                                 ",1,0.928526,9.15109]
["YPL141C","YPL141C                   ","strong similarity to protein kinase KIN4P                                                                                                            ",1,0.916766,8.35624]
["YIL158W","YIL158W                   ","similarity to hypothetical protein YKR100c                                                                                                           ",1,0.913086,8.13641]
["YDR146C","SWI5                      ","transcription factor                                                                                                                                    ",1,0.837801,5.25281]
["YDR150W","NUM1                      ","nuclear migration protein                                                                                                                               ",1,0.798413,4.373]
["YLR131C","ACE2                      ","metallothionein expression activator                                                                                                                    ",1,0.765096,3.79248]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",1,0.757578,3.67686]
["YDR324C","YDR324C                   ","weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins                                                          ",1,0.673043,2.64663]
["YML064C","TEM1                      ","GTP-binding protein of the RAS superfamily                                                                                                              ",1,0.641666,2.35578]
["YJR110W","YJR110W                   ","similarity to human myotubularin                                                                                                                     ",1,0.628105,2.24125]
["YBL033C","RIB1                      ","GTP cyclohydrolase II                                                                                                                                   ",1,0.561178,1.75489]
["YLR190W","YLR190W                   ","hypothetical protein                                                                                                                                 ",2,0.922382,8.1423]
["YGL116W","CDC20                     ","cell division control protein                                                                                                                          ",2,0.90516,7.19701]
["YHR152W","SPO12                     ","sporulation protein                                                                                                                                    ",2,0.88929,6.50238]
["YPR149W","NCE102                    ","involved in non-classical protein export pathway                                                                                                      ",2,0.865382,5.66823]
["YGL257C","MNT2                      ","alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides                                      ",2,0.8421,5.02353]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",2,0.823811,4.59919]
["YGL008C","PMA1                      ","H+-transporting P-type ATPase, major isoform, plasma membrane                                                                                         ",2,0.810016,4.3161]
["YLR084C","RAX2                      ","weak similarity to PST1P                                                                                                                                ",2,0.787027,3.90071]
["YBR038W","CHS2                      ","chitin synthase II                                                                                                                                      ",2,0.758127,3.45726]
["YJR091C","JSN1                      ","suppresses the high-temperature lethality of TUB2-150                                                                                                   ",2,0.64143,2.21471]
["YDR033W","MRH1                      ","membrane protein related to HSP30P                                                                                                                      ",3,0.92888,7.96315]
["YGR092W","DBF2                      ","ser/thr protein kinase related to DBF20P                                                                                                                ",3,0.834526,4.51026]
["YAR018C","KIN3                      ","ser/thr protein kinase                                                                                                                                  ",3,0.794332,3.75562]
["YHR151C","YHR151C                   ","hypothetical protein                                                                                                                                 ",3,0.788323,3.65976]
["YDR312W","SSF2                      ","protein with a potential role in mating                                                                                                                 ",3,0.732198,2.91273]
["YBR139W","YBR139W                   ","strong similarity to carboxypeptidase                                                                                                                ",3,0.67215,2.32131]
["YCL059C","KRR1                      ","strong similarity to fission yeast rev interacting protein mis3                                                                                         ",3,0.559824,1.54623]
["YNL046W","YNL046W                   ","hypothetical protein                                                                                                                                 ",5,0.861387,4.39673]
["YJR127C","ZMS1                      ","transcription factor with similarity to regulatory protein ARD1P                                                                                        ",5,0.706767,2.27142]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",5,0.645174,1.81558]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",6,0.948893,7.32632]
["YHR143W","YHR143W                   ","weak similarity to a-agglutinin core protein AGA1                                                                                                    ",6,0.937974,6.61382]
["YER124C","YER124C                   ","weak similarity to Dictyostelium WD40 repeat protein 2                                                                                               ",6,0.910688,5.36298]
["YLR286C","CTS1                      ","endochitinase                                                                                                                                           ",7,0.921759,5.22347]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",7,0.803647,2.76667]
["YPR035W","GLN1                      ","glutamate--ammonia ligase                                                                                                                               ",7,0.756855,2.28723]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",7,0.662516,1.61745]
["YBR010W","HHT1                      ","histone H3                                                                                                                                              ",8,0.92584,4.78412]
["YBR009C","HHF1                      ","histone H4                                                                                                                                              ",8,0.887011,3.70841]
["YBR133C","HSL7                      ","adapter in a regulatory pathway that relieves tyrosine phosphorylation of CDC28                                                                         ",8,0.851361,3.0714]
["YDL215C","GDH2                      ","NAD-specific glutamate dehydrogenase (NAD)                                                                                                              ",8,0.698365,1.65282]
[]
[]
["30 regulatory targets are negatively correlated with Fkh1 with different time lags"]
["YNL173C","MDG1                      ","GTP-binding protein of the pheromone-response pathway                                                                                                   ",0,-0.537157,1.69669]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",0,-0.636186,2.44403]
["YDL018C","ERP3                      ","weak similarity to DEP1P                                                                                                                                ",1,-0.774121,3.93814]
["YER095W","RAD51                     ","DNA repair protein                                                                                                                                     ",1,-0.845376,5.45498]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",2,-0.544983,1.56003]
["YDL017W","CDC7                      ","protein kinase                                                                                                                                          ",2,-0.627563,2.10543]
["YMR076C","PDS5                      ","precocious dissociation of sister chromatids                                                                                                            ",2,-0.675048,2.5069]
["YMR105C","PGM2                      ","phosphoglucomutase, major isoform                                                                                                                     ",2,-0.693981,2.69116]
["YMR199W","CLN1                      ","cyclin, G1/S-specific                                                                                                                                 ",2,-0.824679,4.61799]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",3,-0.566596,1.58442]
["YAL028W","YAL028W                   ","similarity to hypothetical protein YOR324c                                                                                                           ",3,-0.618416,1.90908]
["YHR061C","GIC1                      ","CDC42 GTPase-binding protein                                                                                                                            ",3,-0.796521,3.79147]
["YOR248W","TOS11                     ","hypothetical protein                                                                                                                                   ",3,-0.79735,3.80519]
["YOR247W","SRL1                      ","similarity to vanadate sensitive suppressor SVS1P                                                                                                       ",3,-0.800478,3.85764]
["YML053C","YML053C                   ","hypothetical protein                                                                                                                                 ",4,-0.664287,2.1004]
["YMR144W","YMR144W                   ","weak similarity to MLP1P                                                                                                                             ",4,-0.665042,2.10618]
["YGR050C","YGR050C                   ","questionable ORF                                                                                                                                     ",4,-0.678572,2.21297]
["YMR198W","CIK1                      ","spindle pole body associated protein                                                                                                                    ",4,-0.716138,2.54573]
["YER125W","RSP5                      ","hect domain E3 ubiquitin-protein ligase                                                                                                                 ",4,-0.768643,3.12872]
["YGL007W","YGL007W                   ","questionable ORF                                                                                                                                     ",5,-0.582672,1.45518]
["YMR197C","VTI1                      ","v-SNARE: involved in Golgi retrograde protein traffic                                                                                                   ",5,-0.619706,1.65848]
["YPL025C","YPL025C                   ","questionable ORF                                                                                                                                     ",5,-0.728849,2.46862]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",5,-0.778055,2.99935]
["YHL024W","RIM4                      ","No sporulation                                                                                                                                          ",6,-0.732188,2.29194]
["YML116W","ATR1                      ","aminotriazole and 4-nitroquinoline resistance protein                                                                                                   ",6,-0.771415,2.67156]
["YGL114W","YGL114W                   ","weak similarity to H.influenzae permease                                                                                                             ",7,-0.750807,2.23429]
["YKR042W","UTH1                      ","involved in the aging process                                                                                                                           ",7,-0.848275,3.39032]
["YNL047C","YNL047C                   ","similarity to probable transcription factor ASK10P and hypothetical protein YPR115w, and strong similarity to hypothetical protein YIL105c         ",8,-0.689096,1.59927]
["YGL183C","MND1                      ","weak similarity to hypothetical coiled-coil protein S. pombe                                                                                            ",8,-0.695739,1.63742]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",8,-0.773028,2.18432]

{"sheet":"Rap1","index":6,"n_rows":89,"n_cols":6,"rows_kept":89,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Rap1: 82"]
[]
["61 regulatory targets are positively correlated with Rap1 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YER032W","FIR1                      ","interacts with the poly(A) polymerase in the two hybrid system                                                                                          ",0,0.734347,3.55302]
["YPL145C","KES1                      ","involved in ergosterol biosynthesis                                                                                                                     ",0,0.643257,2.50891]
["YLR399C","BDF1                      ","sporulation protein                                                                                                                                     ",0,0.641331,2.49106]
["YPR029C","APL4                      ","AP-1 complex subunit, gamma-adaptin, 94 KD                                                                                                            ",0,0.634263,2.42671]
["YLR047C","YLR047C                   ","similarity to hypothetical protein YGL160w                                                                                                           ",0,0.628964,2.37964]
["YJL134W","LCB3                      ","sphingoid base-phosphate phosphatase                                                                                                                    ",0,0.553912,1.80524]
["YLR044C","PDC1                      ","pyruvate decarboxylase, isozyme 1                                                                                                                     ",0,0.549043,1.77306]
["YLR400W","YLR400W                   ","hypothetical protein                                                                                                                                 ",1,0.741403,3.44403]
["YAL033W","POP5                      ","required for processing of tRNAs and rRNAs                                                                                                              ",1,0.670368,2.62029]
["YDR100W","YDR100W                   ","similarity to Dictyostelium development-specific membrane protein                                                                                    ",1,0.627937,2.23986]
["YDR449C","YDR449C                   ","similarity to hypothetical protein S. pombe                                                                                                          ",1,0.623345,2.20248]
["YDR471W","RPL27B                    ","60S large subunit ribosomal protein                                                                                                                   ",1,0.552584,1.70049]
["YDL076C","YDL076C                   ","weak similarity to hypothetical protein S. pombe                                                                                                     ",1,0.551373,1.69295]
["YLR048W","RPS0B                     ","40S ribosomal protein p40 homolog B                                                                                                                    ",1,0.550828,1.68957]
["YOR095C","RKI1                      ","D-ribose-5-phosphate ketol-isomerase                                                                                                                    ",1,0.540907,1.62908]
["YCR024C-A","PMP1                    ","H+-ATPase subunit, plasma membrane                                                                                                                  ",2,0.812836,4.3717]
["YNL163C","RIA1                      ","translation elongation factor eEF4                                                                                                                      ",2,0.760421,3.48977]
["YOL109W","ZEO1                      ","weak similarity to G.hirsutum embryonic abundant protein D-7                                                                                            ",2,0.714187,2.90643]
["YLR448W","RPL6B                     ","60S large subunit ribosomal protein                                                                                                                    ",2,0.684361,2.59558]
["YOR234C","RPL33B                    ","ribosomal protein L35a.e.c15                                                                                                                          ",2,0.678615,2.54043]
["YPL143W","RPL33A                    ","ribosomal protein L35a.e.c16                                                                                                                          ",2,0.672308,2.48149]
["YMR015C","ERG5                      ","C-22 sterol desaturase                                                                                                                                  ",2,0.652587,2.30716]
["YGL123W","RPS2                      ","40S small subunit ribosomal protein                                                                                                                     ",2,0.640652,2.20841]
["YOR096W","RPS7A                     ","ribosomal protein                                                                                                                                      ",2,0.639268,2.19727]
["YGR118W","RPS23A                    ","40S small subunit ribosomal protein S23.e                                                                                                             ",2,0.633952,2.15503]
["YHR203C","RPS4B                     ","ribosomal protein S4.e.c8                                                                                                                              ",2,0.633867,2.15435]
["YML063W","RPS1B                     ","ribosomal protein S3a.e                                                                                                                                ",2,0.614587,2.0084]
["YER031C","YPT31                     ","GTP-binding protein of the rab family                                                                                                                  ",2,0.611714,1.98756]
["YOL127W","RPL25                     ","ribosomal protein L23a.e                                                                                                                               ",2,0.599866,1.90397]
["YPR131C","NAT3                      ","N-acetyltransferases                                                                                                                                    ",2,0.599735,1.90306]
["YBR181C","RPS6B                     ","ribosomal protein S6.e                                                                                                                                 ",2,0.598552,1.89492]
["YDR064W","RPS13                     ","ribosomal protein                                                                                                                                      ",2,0.585674,1.80853]
["YLR388W","RPS29A                    ","ribosomal protein S29.e.A                                                                                                                             ",2,0.583853,1.79663]
["YGL103W","RPL28                     ","60S large subunit ribosomal protein L27a.e                                                                                                             ",2,0.568205,1.69753]
["YDL136W","RPL35B                    ","60S large subunit ribosomal protein                                                                                                                   ",2,0.551249,1.59607]
["YBR189W","RPS9B                     ","ribosomal protein S9.e.B                                                                                                                               ",3,0.685072,2.43508]
["YBR084C-A","RPL19A                  ","60S large subunit ribosomal protein L19.e                                                                                                           ",3,0.656401,2.19098]
["YBR191W","RPL21A                    ","ribosomal protein L21.e                                                                                                                               ",3,0.648038,2.12518]
["YNL329C","PEX6                      ","peroxisomal assembly protein                                                                                                                            ",3,0.612901,1.87152]
["YDR024W","FYV1                      ","hypothetical protein                                                                                                                                    ",4,0.772595,3.17984]
["YDL082W","RPL13A                    ","60S large subunit ribosomal protein L13                                                                                                               ",4,0.723376,2.61692]
["YDR186C","YDR186C                   ","hypothetical protein                                                                                                                                 ",4,0.720446,2.5878]
["YDR188W","CCT6                      ","component of chaperonin-containing T-complex (zeta subunit)                                                                                             ",4,0.717322,2.5572]
["YDL075W","RPL31A                    ","60S large subunit ribosomal protein L31.e                                                                                                             ",4,0.687626,2.28802]
["YDR500C","RPL37B                    ","ribosomal protein L.37.e                                                                                                                              ",4,0.684758,2.26391]
["YDR312W","SSF2                      ","protein with a potential role in mating                                                                                                                 ",4,0.644717,1.95676]
["YGL031C","RPL24A                    ","60S large subunit ribosomal protein L24.e.A                                                                                                           ",4,0.627254,1.8378]
["YDR025W","RPS11A                    ","ribosomal protein S11.e                                                                                                                               ",4,0.621731,1.80183]
["YEL074W","YEL074W                   ","similarity to subtelomeric encoded proteins                                                                                                          ",4,0.601433,1.67589]
["YKL180W","RPL17A                    ","ribosomal protein L17.e                                                                                                                               ",4,0.592231,1.62184]
["YEL054C","RPL12A                    ","60S large subunit ribosomal protein L12.e                                                                                                             ",4,0.581313,1.55996]
["YER074W","RPS24A                    ","40s small subunit ribosomal protein S24.e                                                                                                             ",4,0.58072,1.55667]
["YDR544C","YDR544C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",5,0.72816,2.46213]
["YLR467W","YRF1-5                    ","strong similarity to subtelomeric encoded proteins                                                                                                    ",5,0.672816,2.00526]
["YLR463C","YLR463C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",5,0.649671,1.84499]
["YEL076C","#REF!                     ","                                                                                                                                                       ",5,0.645268,1.81619]
["YLR465C","YLR465C                   ","questionable ORF                                                                                                                                     ",5,0.627378,1.70419]
["YHR096C","HXT5                      ","member of the hexose transporter family                                                                                                                 ",6,0.751565,2.46933]
["YFL021W","GAT1                      ","transcription factor for nitrogen regulation                                                                                                            ",6,0.725696,2.23637]
["YGR034W","RPL26B                    ","60S large subunit ribosomal protein                                                                                                                   ",6,0.652923,1.71612]
["YIL018W","RPL2B                     ","60S large subunit ribosomal protein L8.e                                                                                                               ",8,0.733066,1.87493]
[]
[]
["21 regulatory targets are negatively correlated with Rap1 with different time lags"]
["YJL089W","SIP4                      ","interacts with SNF1 protein kinase                                                                                                                      ",0,-0.54633,1.75535]
["YOR365C","YOR365C                   ","strong similarity to YAL053w                                                                                                                         ",0,-0.559295,1.84146]
["YOR342C","YOR342C                   ","weak similarity to YAl037w                                                                                                                           ",0,-0.613331,2.24639]
["YOR344C","TYE7                      ","basic helix-loop-helix transcription factor                                                                                                             ",0,-0.632679,2.41253]
["YOL082W","CVT19                     ","similarity to YOL083w                                                                                                                                  ",1,-0.581146,1.88778]
["YDL133W","YDL133W                   ","hypothetical protein                                                                                                                                 ",1,-0.583054,1.90097]
["YGR149W","YGR149W                   ","similarity to PIR:T40675 hypothetical protein SPBC776.05 S. pombe                                                                                    ",1,-0.604995,2.05951]
["YJR058C","APS2                      ","AP-2 complex subunit, sigma2 subunit, 17 KD                                                                                                           ",1,-0.607452,2.07808]
["YDR545W","YRF1-1                    ","Y'-helicase protein 1                                                                                                                                 ",1,-0.642383,2.36202]
["YEL075C","YEL075C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",2,-0.566388,1.68637]
["YNL339C","YRF1-6                    ","nearly identical to other subtelomerically encoded putative helicases                                                                                 ",2,-0.628815,2.11504]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",3,-0.621399,1.92973]
["YHR204W","HTM1                      ","similarity to alpha-mannosidases                                                                                                                        ",3,-0.685546,2.43937]
["YPR080W","TEF1                      ","translation elongation factor eEF1 alpha-A chain, cytosolic                                                                                           ",5,-0.663229,1.93699]
["YNL144C","YNL144C                   ","similarity to YHR131c                                                                                                                                ",5,-0.669364,1.98035]
["YOL059W","GPD2                      ","glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial                                                                                              ",5,-0.754528,2.72757]
["YOL060C","AMI3                      ","similarity to hypothetical C.elegans and A.thaliana proteins                                                                                            ",6,-0.757965,2.53208]
["YLR387C","YLR387C                   ","similarity to YBR267w                                                                                                                                ",7,-0.670249,1.6622]
["YDR450W","RPS18A                    ","ribosomal protein S18.e.c4                                                                                                                            ",7,-0.677928,1.70809]
["YER117W","RPL23B                    ","ribosomal protein L23.e                                                                                                                               ",7,-0.779115,2.49841]
["YFL022C","FRS2                      ","phenylalanine--tRNA ligase beta chain, cytosolic                                                                                                      ",8,-0.73416,1.88256]

{"sheet":"Swi4","index":7,"n_rows":91,"n_cols":6,"rows_kept":91,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Swi4: 84"]
[]
["66 regulatory targets are positively correlated with Swi4 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YER111C","SWI4                      ","transcription factor                                                                                                                                    ",0,0.997503,10]
["YGR109C","CLB6                      ","cyclin, B-type                                                                                                                                        ",0,0.92998,9.8723]
["YMR179W","SPT21                     ","required for normal transcription at a number of loci                                                                                                  ",0,0.926785,9.61825]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",0,0.899355,7.89293]
["YHR149C","YHR149C                   ","similarity to hypothetical protein YGR221c                                                                                                           ",0,0.888972,7.39101]
["YML027W","YOX1                      ","homoeodomain protein                                                                                                                                    ",0,0.877875,6.91759]
["YPL267W","YPL267W                   ","weak similarity to C.elegans transcription factor unc-86                                                                                             ",0,0.877251,6.89266]
["YGL038C","OCH1                      ","alpha-1,6-mannosyltransferase                                                                                                                         ",0,0.867329,6.5169]
["YGR152C","RSR1                      ","GTP-binding protein                                                                                                                                     ",0,0.865624,6.45599]
["YGR151C","YGR151C                   ","questionable ORF                                                                                                                                     ",0,0.860776,6.28829]
["YMR199W","CLN1                      ","cyclin, G1/S-specific                                                                                                                                 ",0,0.854617,6.08593]
["YBR071W","YBR071W                   ","hypothetical protein                                                                                                                                 ",0,0.841811,5.6992]
["YGR221C","TOS2                      ","similarity to hypothetical protein YHR149c                                                                                                              ",0,0.833268,5.46353]
["YDR507C","GIN4                      ","ser/thr protein kinase                                                                                                                                  ",0,0.824739,5.24376]
["YCR065W","HCM1                      ","transcription factor                                                                                                                                    ",0,0.791597,4.50892]
["YDR508C","GNP1                      ","high-affinity glutamine permease                                                                                                                        ",0,0.711719,3.25056]
["YGR153W","TOS10                     ","hypothetical protein                                                                                                                                   ",0,0.649277,2.56564]
["YDR309C","GIC2                      ","CDC42 GTPase-binding protein                                                                                                                            ",0,0.600656,2.14406]
["YPL163C","SVS1                      ","vanadate sensitive suppressor                                                                                                                           ",1,0.920855,8.61555]
["YER001W","MNN1                      ","alpha-1,3-mannosyltransferase                                                                                                                         ",1,0.854677,5.72189]
["YGR189C","CRH1                      ","family of putative glycosidases might exert a common role in cell wall organization                                                                     ",1,0.851448,5.62674]
["YNL300W","TOS6                      ","similarity to MID2P                                                                                                                                     ",1,0.845996,5.47212]
["YJL187C","SWE1                      ","ser/tyr dual-specifity protein kinase                                                                                                                   ",1,0.839292,5.2916]
["YJR054W","YJR054W                   ","similarity to hypothetical protein YML047c                                                                                                           ",1,0.835471,5.19311]
["YKR013W","PRY2                      ","similarity to the plant PR-1 class of pathogen related proteins                                                                                         ",1,0.742266,3.45595]
["YBR070C","SAT2                      ","osmotolerance protein                                                                                                                                   ",1,0.739891,3.42331]
["YML101C","YML101C                   ","weak similarity to YMR264w                                                                                                                           ",1,0.712524,3.07476]
["YGR014W","MSB2                      ","multicopy suppressor of a CDC24 bud emergence defect                                                                                                    ",1,0.654973,2.47447]
["YBR161W","YBR161W                   ","strong similarity to SUR1P                                                                                                                           ",1,0.634436,2.29395]
["YMR306W","FKS3                      ","similarity to 1,3-beta-glucan synthases                                                                                                               ",1,0.598634,2.01222]
["YOR378W","YOR378W                   ","strong similarity to aminotriazole resistance protein                                                                                                ",1,0.592862,1.97027]
["YKL103C","LAP4                      ","aminopeptidase yscI precursor, vacuolar                                                                                                               ",1,0.585275,1.91645]
["YDR501W","PLM2                      ","PLasmid Maintenance mutant shows 2mu-m plasmid instability                                                                                              ",1,0.568932,1.80539]
["YDR224C","HTB1                      ","histone H2B                                                                                                                                             ",2,0.920521,8.02783]
["YDR225W","HTA1                      ","histone H2A                                                                                                                                             ",2,0.891188,6.57852]
["YPL127C","HHO1                      ","histone H1 protein                                                                                                                                      ",2,0.861058,5.53792]
["YBL003C","HTA2                      ","histone H2A.2                                                                                                                                           ",2,0.823774,4.5984]
["YBL002W","HTB2                      ","histone H2B.2                                                                                                                                           ",2,0.819242,4.50225]
["YOR248W","TOS11                     ","hypothetical protein                                                                                                                                   ",2,0.761678,3.50776]
["YKL008C","LAC1                      ","protein required with LAG1P for ER-to-Golgi transport of GPI-anchored proteins                                                                          ",2,0.750823,3.35651]
["YHR061C","GIC1                      ","CDC42 GTPase-binding protein                                                                                                                            ",2,0.730977,3.10215]
["YOR247W","SRL1                      ","similarity to vanadate sensitive suppressor SVS1P                                                                                                       ",2,0.720952,2.98331]
["YLR300W","EXG1                      ","exo-beta-1,3-glucanase (I/II), major isoform                                                                                                          ",2,0.70592,2.81585]
["YDL055C","PSA1                      ","mannose-1-phosphate guanyltransferase                                                                                                                   ",2,0.643039,2.22778]
["YOR372C","NDD1                      ","protein required for nuclear division                                                                                                                   ",2,0.608181,1.96225]
["YJL186W","MNN5                      ","putative mannosyltransferase                                                                                                                            ",2,0.560983,1.65359]
["YOR373W","NUD1                      ","cell cycle regulatory protein                                                                                                                           ",2,0.558592,1.63928]
["YIL123W","SIM1                      ","involved in cell cycle regulation and aging                                                                                                             ",3,0.850171,4.8731]
["YOL012C","HTZ1                      ","evolutionarily conserved member of the histone H2A F/Z family of histone variants                                                                       ",3,0.827992,4.37187]
["YOR246C","YOR246C                   ","weak similarity to reductases                                                                                                                        ",3,0.778884,3.51637]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",3,0.776886,3.48708]
["YBR077C","YBR077C                   ","hypothetical protein                                                                                                                                 ",3,0.702761,2.60192]
["YBR078W","ECM33                     ","involved in cell wall biogenesis and architecture                                                                                                      ",3,0.621231,1.92856]
["YLR056W","ERG3                      ","C-5 sterol desaturase                                                                                                                                   ",3,0.595294,1.75666]
["YDR011W","SNQ2                      ","multidrug resistance protein                                                                                                                            ",4,0.793068,3.46526]
["YPR119W","CLB2                      ","cyclin, G2/M-specific                                                                                                                                 ",5,0.790092,3.15389]
["YOL113W","SKM1                      ","STE20/PAK-like protein kinase                                                                                                                           ",5,0.746493,2.64271]
["YOR315W","YOR315W                   ","hypothetical protein                                                                                                                                 ",5,0.706401,2.26833]
["YCR064C","YCR064C                   ","questionable ORF                                                                                                                                     ",6,0.726064,2.23947]
["YDR526C","YDR526C                   ","questionable ORF                                                                                                                                     ",6,0.706145,2.07931]
["YJL194W","CDC6                      ","cell division control protein                                                                                                                           ",7,0.93762,5.92862]
["YOL011W","PLB3                      ","phospholipase B (lysophospholipase)                                                                                                                     ",7,0.87913,3.98175]
["YER145C","FTR1                      ","iron permease that mediates high-affinity iron uptake                                                                                                   ",7,0.753159,2.25466]
["YNL295W","YNL295W                   ","hypothetical protein                                                                                                                                 ",7,0.69203,1.79642]
["YKR093W","PTR2                      ","peptide transporter                                                                                                                                     ",7,0.67362,1.68216]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",8,0.840968,2.92199]
[]
[]
["18 regulatory targets are negatively correlated with Swi4 with different time lags"]
["YPL126W","NAN1                      ","weak similarity to fruit fly TFIID subunit p85                                                                                                          ",0,-0.531307,1.66021]
["YBR162C","TOS1                      ","similarity to hypothetical protein YJL171c                                                                                                              ",0,-0.554839,1.81143]
["YGR190C","YGR190C                   ","questionable ORF                                                                                                                                     ",0,-0.626157,2.35511]
["YER079W","YER079W                   ","hypothetical protein                                                                                                                                 ",1,-0.527423,1.55002]
["YNL298W","CLA4                      ","ser/thr protein kinase                                                                                                                                  ",2,-0.825816,4.64281]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",3,-0.712078,2.69549]
["YEL040W","UTR2                      ","cell wall protein                                                                                                                                       ",3,-0.782044,3.56345]
["YNL231C","PDR16                     ","protein involved in lipid biosynthesis and multidrug resistance                                                                                        ",5,-0.843454,4.01535]
["YMR307W","GAS1                      ","glycophospholipid-anchored surface glycoprotein                                                                                                         ",6,-0.78846,2.865]
["YLR332W","MID2                      ","mating process protein                                                                                                                                  ",6,-0.798907,2.99417]
["YMR305C","SCW10                     ","similarity to B.japonicum putative beta-(-6)glucan transferase                                                                                         ",6,-0.843319,3.66235]
["YGL253W","HXK2                      ","hexokinase II                                                                                                                                           ",7,-0.65215,1.55965]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",7,-0.65404,1.57001]
["YKL096W-A","CWP2                    ","cell wall mannoprotein                                                                                                                                ",8,-0.694085,1.62781]
["YDR500C","RPL37B                    ","ribosomal protein L.37.e                                                                                                                              ",8,-0.741711,1.93638]
["YIL056W","YIL056W                   ","similarity to YER064c                                                                                                                                ",8,-0.761734,2.08992]
["YJL158C","CIS3                      ","strong similarity to PIR1P/HSP150P/PIR3P family                                                                                                         ",8,-0.781157,2.25622]
["YKL096W","CWP1                      ","cell wall mannoprotein                                                                                                                                  ",8,-0.84381,2.96156]

{"sheet":"Swi5","index":8,"n_rows":49,"n_cols":6,"rows_kept":49,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Swi5: 42"]
[]
["32 regulatory targets are positively correlated with Swi5 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YDL224C","WHI4                      ","strong similarity to WHI3 protein                                                                                                                       ",0,0.711607,3.24915]
["YIL051C","MMF1                      ","required for maintenance of mitochondrial DNA                                                                                                           ",0,0.677284,2.84935]
["YDL032W","YDL032W                   ","questionable ORF                                                                                                                                     ",0,0.653205,2.60343]
["YDL226C","GCS1                      ","ADP-ribosylation factor GTPase-activating protein (ARF-GAP)                                                                                             ",0,0.586426,2.03481]
["YDL225W","SHS1                      ","septin                                                                                                                                                  ",0,0.582101,2.00271]
["YAL022C","FUN26                     ","intracellular membrane protein involved in nucleoside transport                                                                                        ",1,0.722324,3.19405]
["YKL186C","MTR2                      ","mRNA transport protein                                                                                                                                  ",1,0.69682,2.89504]
["YDL030W","PRP9                      ","pre-mRNA splicing factor (snRNA-associated protein)                                                                                                     ",1,0.64243,2.36242]
["YDR398W","YDR398W                   ","similarity to human KIAA0007 gene                                                                                                                    ",1,0.580533,1.88355]
["YPL158C","YPL158C                   ","weak similarity to human nucleolin                                                                                                                   ",2,0.883873,6.29411]
["YDL117W","CYK3                      ","similarity to hypothetical S. pombe protein, protein possibly involved in cytokinesis                                                                 ",2,0.782133,3.82004]
["YLR194C","YLR194C                   ","hypothetical protein                                                                                                                                 ",2,0.773622,3.68545]
["YPL157W","YPL157W                   ","weak similarity to S.pombe hypothetical protein SPAC2G11.15c                                                                                         ",2,0.767494,3.59272]
["YNL078W","JIP1                      ","hypothetical protein                                                                                                                                    ",2,0.724194,3.02107]
["YKL185W","ASH1                      ","negative regulator of HO transcription                                                                                                                  ",2,0.698066,2.73304]
["YNL145W","MFA2                      ","mating pheromone a-factor 2                                                                                                                             ",2,0.583738,1.79589]
["YIL009W","FAA3                      ","acyl CoA synthase                                                                                                                                       ",3,0.73374,2.9303]
["YGR086C","YGR086C                   ","strong similarity to hypothetical protein YPL004c                                                                                                    ",3,0.728952,2.87618]
["YKL164C","PIR1                      ","required for tolerance to heat shock                                                                                                                    ",3,0.718808,2.76575]
["YKL163W","PIR3                      ","member of the PIR1P/Pir2p/PIR3P family                                                                                                                  ",3,0.697941,2.5551]
["YDL179W","PCL9                      ","cyclin like protein interacting with PHO85P                                                                                                             ",3,0.689715,2.47757]
["YJL159W","HSP150                    ","member of the PIR1P/HSP150P/PIR3P family                                                                                                              ",3,0.658958,2.21155]
["YMR261C","TPS3                      ","alpha,alpha-trehalose-phosphate synthase, 115 KD subunit                                                                                              ",3,0.615338,1.88802]
["YDL127W","PCL2                      ","cyclin, G1/S-specific                                                                                                                                 ",3,0.612126,1.86631]
["YJL078C","PRY3                      ","strong similarity to the plant PR-1 class of pathogen related proteins                                                                                  ",4,0.826455,4.02253]
["YGL028C","SCW11                     ","similarity to glucanase                                                                                                                                ",4,0.795141,3.49626]
["YDR345C","HXT3                      ","low-affinity hexose transporter                                                                                                                         ",4,0.711623,2.50257]
["YEL077C","YEL077C                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,0.657665,2.05049]
["YBR158W","CST13                     ","weak similarity to TRCDSEMBL:AF176518_1 F-box protein FBL2; human                                                                                      ",4,0.649299,1.98937]
["YLR286C","CTS1                      ","endochitinase                                                                                                                                           ",6,0.820662,3.29418]
["YNL238W","KEX2                      ","endoproteinase of late golgi compartment                                                                                                                ",7,0.790853,2.62156]
["YJL080C","SCP160                    ","required for maintenance of exact ploidy                                                                                                              ",7,0.693984,1.8091]
[]
[]
["10 regulatory targets are negatively correlated with Swi5 with different time lags"]
["YGR189C","CRH1                      ","family of putative glycosidases might exert a common role in cell wall organization                                                                     ",0,-0.550477,1.78248]
["YMR173W","DDR48                     ","heat shock protein                                                                                                                                     ",3,-0.719474,2.77283]
["YIL129C","TAO3                      ","Transcriptional Activator of OCH1                                                                                                                       ",3,-0.761785,3.27662]
["YBL108W","YBL108W                   ","strong similarity to subtelomeric encoded proteins                                                                                                   ",4,-0.720296,2.58631]
["YDL174C","DLD1                      ","D-lactate ferricytochrome C oxidoreductase (D-LCR)                                                                                                      ",5,-0.66266,1.93302]
["YNL079C","TPM1                      ","tropomyosin 1                                                                                                                                           ",5,-0.676905,2.03523]
["YML125C","YML125C                   ","strong similarity to cytochrome-b5- and nitrate reductases                                                                                           ",5,-0.698274,2.20095]
["YNL241C","ZWF1                      ","glucose-6-phosphate dehydrogenase                                                                                                                       ",6,-0.704635,2.06778]
["YDL115C","YDL115C                   ","weak similarity to hypothetical protein D. melanogaster                                                                                              ",6,-0.816379,3.23142]
["YML131W","YML131W                   ","similarity to human leukotriene b4 12-hydroxydehydrogenase                                                                                           ",6,-0.860939,4.00054]

{"sheet":"Swi6","index":9,"n_rows":56,"n_cols":6,"rows_kept":56,"flags":["formulas_cached_only"]}
["The number of regulatory targets of Swi6: 49"]
[]
["25 regulatory targets are positively correlated with Swi6 with different time lags"]
["ORF "," Name ","Function annotation"," Time lag "," Corr "," -1og_{10}(P-value) "]
["YHR061C","GIC1                      ","CDC42 GTPase-binding protein                                                                                                                            ",0,0.716882,3.31658]
["YOR246C","YOR246C                   ","weak similarity to reductases                                                                                                                        ",0,0.629437,2.3838]
["YDR225W","HTA1                      ","histone H2A                                                                                                                                             ",0,0.608647,2.208]
["YMR215W","YMR215W                   ","similarity to GAS1 protein                                                                                                                           ",0,0.601194,2.1483]
["YLR056W","ERG3                      ","C-5 sterol desaturase                                                                                                                                   ",0,0.577365,1.96815]
["YOR248W","TOS11                     ","hypothetical protein                                                                                                                                   ",0,0.565256,1.88236]
["YOR373W","NUD1                      ","cell cycle regulatory protein                                                                                                                           ",0,0.560029,1.84645]
["YJL194W","CDC6                      ","cell division control protein                                                                                                                           ",5,0.716348,2.35438]
["YKL113C","RAD27                     ","ssDNA endonuclease and 5'-3'exonuclease                                                                                                                ",6,0.779578,2.7617]
["YLR103C","CDC45                     ","required for minichromosome maintenance and initiation of chromosomal DNA replication                                                                  ",6,0.774638,2.70662]
["YMR261C","TPS3                      ","alpha,alpha-trehalose-phosphate synthase, 115 KD subunit                                                                                              ",6,0.767855,2.63358]
["YGR109C","CLB6                      ","cyclin, B-type                                                                                                                                        ",6,0.758576,2.53819]
["YHR149C","YHR149C                   ","similarity to hypothetical protein YGR221c                                                                                                           ",6,0.749421,2.44879]
["YDL003W","MCD1                      ","Mitotic Chromosome Determinant                                                                                                                          ",6,0.748248,2.43765]
["YOR378W","YOR378W                   ","strong similarity to aminotriazole resistance protein                                                                                                ",7,0.843366,3.3106]
["YDL018C","ERP3                      ","weak similarity to DEP1P                                                                                                                                ",7,0.767925,2.38886]
["YKR013W","PRY2                      ","similarity to the plant PR-1 class of pathogen related proteins                                                                                         ",7,0.758661,2.30338]
["YER001W","MNN1                      ","alpha-1,3-mannosyltransferase                                                                                                                         ",7,0.733587,2.09256]
["YPL163C","SVS1                      ","vanadate sensitive suppressor                                                                                                                           ",7,0.722693,2.00913]
["YGR189C","CRH1                      ","family of putative glycosidases might exert a common role in cell wall organization                                                                     ",7,0.714829,1.95162]
["YOR074C","CDC21                     ","thymidylate synthase                                                                                                                                   ",7,0.698912,1.84157]
["YMR305C","SCW10                     ","similarity to B.japonicum putative beta-(-6)glucan transferase                                                                                         ",7,0.694889,1.81501]
["YLR332W","MID2                      ","mating process protein                                                                                                                                  ",8,0.81348,2.58128]
["YDR224C","HTB1                      ","histone H2B                                                                                                                                             ",8,0.780862,2.25354]
["YPR075C","OPY2                      ","pheromone resistant yeast 2                                                                                                                             ",8,0.75412,2.02957]
[]
[]
["24 regulatory targets are negatively correlated with Swi6 with different time lags"]
["YEL040W","UTR2                      ","cell wall protein                                                                                                                                       ",0,-0.557516,1.82941]
["YNL298W","CLA4                      ","ser/thr protein kinase                                                                                                                                  ",0,-0.642995,2.50647]
["YGR221C","TOS2                      ","similarity to hypothetical protein YHR149c                                                                                                              ",1,-0.584047,1.90788]
["YER078C","YER078C                   ","similarity to E.coli X-Pro aminopeptidase II                                                                                                         ",1,-0.822847,4.88815]
["YCR065W","HCM1                      ","transcription factor                                                                                                                                    ",2,-0.591501,1.84712]
["YDR309C","GIC2                      ","CDC42 GTPase-binding protein                                                                                                                            ",2,-0.608374,1.96362]
["YJL115W","ASF1                      ","anti-silencing protein                                                                                                                                  ",2,-0.608519,1.96465]
["YER111C","SWI4                      ","transcription factor                                                                                                                                    ",2,-0.631344,2.13463]
["YER070W","RNR1                      ","ribonucleoside-diphosphate reductase, large subunit                                                                                                   ",2,-0.633168,2.14887]
["YNL273W","TOF1                      ","topoisomerase I interacting factor 1                                                                                                                    ",2,-0.634197,2.15695]
["YIL026C","IRR1                      ","essential protein                                                                                                                                       ",2,-0.661437,2.3836]
["YDR507C","GIN4                      ","ser/thr protein kinase                                                                                                                                  ",2,-0.664983,2.41503]
["YMR306W","FKS3                      ","similarity to 1,3-beta-glucan synthases                                                                                                               ",3,-0.761661,3.27497]
["YOR372C","NDD1                      ","protein required for nuclear division                                                                                                                   ",4,-0.682499,2.24515]
["YDR113C","PDS1                      ","cell cycle regulator                                                                                                                                    ",4,-0.691107,2.31769]
["YLR437C","YLR437C                   ","hypothetical protein                                                                                                                                 ",5,-0.63983,1.78131]
["YDR451C","YHP1                      ","strong similarity to YOX1P                                                                                                                              ",5,-0.727414,2.45513]
["YIL123W","SIM1                      ","involved in cell cycle regulation and aging                                                                                                             ",5,-0.801219,3.30768]
["YLR439W","MRPL4                     ","ribosomal protein, mitochondrial                                                                                                                     ",5,-0.811691,3.46328]
["YKL096W","CWP1                      ","cell wall mannoprotein                                                                                                                                  ",6,-0.733982,2.30762]
["YKR040C","YKR040C                   ","questionable ORF                                                                                                                                     ",6,-0.763503,2.58822]
["YHR151C","YHR151C                   ","hypothetical protein                                                                                                                                 ",7,-0.709963,1.9171]
["YDR452W","PHM5                      ","similarity to human sphingomyelin phosphodiesterase (PIR:S06957)                                                                                        ",7,-0.72805,2.04959]
["YCR064C","YCR064C                   ","questionable ORF                                                                                                                                     ",8,-0.733564,1.8784]