06 Dec 2004 10:04:56,116 [main] (ResourceLoader.java:31) -
06 Dec 2004 10:04:56,132 [main] (ResourceLoader.java:32) - AffyMAPSDetector: New Session Started ....
06 Dec 2004 10:04:56,132 [main] (ResourceLoader.java:33) - Log4j configured successfully (loaded "log4j_config.properties" file.)
06 Dec 2004 10:04:56,538 [main] (AppIcons.java:50) - Image Icon created: About16.gif
06 Dec 2004 10:04:56,554 [main] (AppIcons.java:50) - Image Icon created: Search16.gif
06 Dec 2004 10:04:56,585 [main] (AppIcons.java:50) - Image Icon created: stop16.gif
06 Dec 2004 10:04:56,585 [main] (AppIcons.java:50) - Image Icon created: exit16.gif
06 Dec 2004 10:04:56,600 [main] (AppIcons.java:50) - Image Icon created: fileclose16.gif
06 Dec 2004 10:04:56,600 [main] (AppIcons.java:50) - Image Icon created: connect16.gif
06 Dec 2004 10:04:56,632 [main] (AppIcons.java:50) - Image Icon created: Play16.gif
06 Dec 2004 10:04:56,632 [main] (AppIcons.java:50) - Image Icon created: Help16.gif
06 Dec 2004 10:04:56,632 [main] (AppIcons.java:50) - Image Icon created: wizard.gif
06 Dec 2004 10:16:30,155 [main] (ResourceLoader.java:31) -
06 Dec 2004 10:16:30,170 [main] (ResourceLoader.java:32) - AffyMAPSDetector: New Session Started ....
06 Dec 2004 10:16:30,170 [main] (ResourceLoader.java:33) - Log4j configured successfully (loaded "log4j_config.properties" file.)
06 Dec 2004 10:16:30,576 [main] (AppIcons.java:50) - Image Icon created: About16.gif
06 Dec 2004 10:16:30,592 [main] (AppIcons.java:50) - Image Icon created: Search16.gif
06 Dec 2004 10:16:30,623 [main] (AppIcons.java:50) - Image Icon created: stop16.gif
06 Dec 2004 10:16:30,623 [main] (AppIcons.java:50) - Image Icon created: exit16.gif
06 Dec 2004 10:16:30,623 [main] (AppIcons.java:50) - Image Icon created: fileclose16.gif
06 Dec 2004 10:16:30,639 [main] (AppIcons.java:50) - Image Icon created: connect16.gif
06 Dec 2004 10:16:30,655 [main] (AppIcons.java:50) - Image Icon created: Play16.gif
06 Dec 2004 10:16:30,670 [main] (AppIcons.java:50) - Image Icon created: Help16.gif
06 Dec 2004 10:16:30,686 [main] (AppIcons.java:50) - Image Icon created: wizard.gif
06 Dec 2004 10:31:07,085 [main] (ResourceLoader.java:31) -
06 Dec 2004 10:31:07,100 [main] (ResourceLoader.java:32) - AffyMAPSDetector: New Session Started ....
06 Dec 2004 10:31:07,100 [main] (ResourceLoader.java:33) - Log4j configured successfully (loaded "log4j_config.properties" file.)
06 Dec 2004 10:31:07,507 [main] (AppIcons.java:50) - Image Icon created: About16.gif
06 Dec 2004 10:31:07,522 [main] (AppIcons.java:50) - Image Icon created: Search16.gif
06 Dec 2004 10:31:07,553 [main] (AppIcons.java:50) - Image Icon created: stop16.gif
06 Dec 2004 10:31:07,553 [main] (AppIcons.java:50) - Image Icon created: exit16.gif
06 Dec 2004 10:31:07,553 [main] (AppIcons.java:50) - Image Icon created: fileclose16.gif
06 Dec 2004 10:31:07,569 [main] (AppIcons.java:50) - Image Icon created: connect16.gif
06 Dec 2004 10:31:07,585 [main] (AppIcons.java:50) - Image Icon created: Play16.gif
06 Dec 2004 10:31:07,600 [main] (AppIcons.java:50) - Image Icon created: Help16.gif
06 Dec 2004 10:31:07,600 [main] (AppIcons.java:50) - Image Icon created: wizard.gif
06 Dec 2004 10:32:41,726 [Thread-4] (AffyMapsDetectorUI.java:543) - Loading Gene information/annotation file ...
06 Dec 2004 10:32:42,851 [Thread-4] (AffyMapsDetectorUI.java:555) - Dropping Line:"AFFX-hum_alu_at U14573 " [line parse error]
06 Dec 2004 10:32:42,867 [Thread-4] (AffyMapsDetectorUI.java:556) - java.lang.ArrayIndexOutOfBoundsException: 3
06 Dec 2004 10:32:42,882 [Thread-4] (AffyMapsDetectorUI.java:599) - Loading Probeset information file ...
06 Dec 2004 10:35:47,430 [Thread-8] (SnpMatcher.java:356) - 1: Processing Gene [Accession#: X60188] ...
06 Dec 2004 10:38:32,588 [Thread-8] (SnpMatcher.java:356) - 2: Processing Gene [Accession#: X60957] ...
06 Dec 2004 10:38:42,431 [Thread-8] (SnpMatcher.java:356) - 3: Processing Gene [Accession#: X65962] ...
06 Dec 2004 10:38:43,181 [Thread-8] (SnpMatcher.java:356) - 4: Processing Gene [Accession#: X68149] ...
06 Dec 2004 10:39:09,400 [Thread-8] (SnpMatcher.java:356) - 5: Processing Gene [Accession#: X68149] ...
06 Dec 2004 10:39:23,291 [Thread-8] (SnpMatcher.java:356) - 6: Processing Gene [Accession#: X68277] ...
06 Dec 2004 10:39:27,744 [Thread-8] (SnpMatcher.java:356) - 7: Processing Gene [Accession#: X07820] ...
06 Dec 2004 10:39:28,354 [Thread-8] (SnpMatcher.java:356) - 8: Processing Gene [Accession#: U48705] ...
06 Dec 2004 10:39:44,229 [Thread-8] (SnpMatcher.java:356) - 9: Processing Gene [Accession#: U50648] ...
06 Dec 2004 10:39:44,760 [Thread-8] (SnpMatcher.java:356) - 10: Processing Gene [Accession#: U51004] ...
06 Dec 2004 10:39:49,776 [Thread-8] (SnpMatcher.java:356) - 11: Processing Gene [Accession#: Y08200] ...
06 Dec 2004 10:39:58,244 [Thread-8] (SnpMatcher.java:356) - 12: Processing Gene [Accession#: U53442] ...
06 Dec 2004 10:40:03,526 [Thread-8] (SnpMatcher.java:356) - 13: Processing Gene [Accession#: U54778] ...
06 Dec 2004 10:40:22,979 [Thread-8] (SnpMatcher.java:356) - 14: Processing Gene [Accession#: U57317] ...
06 Dec 2004 10:40:24,104 [Thread-8] (GeneInfo.java:71) - Probe(Probe ID:1012_at; X: 629; Y: 537) doesn't exist in gene-sequence(Gene Ident: U57317; Locus ID: 8850; GI: )
06 Dec 2004 10:40:24,104 [Thread-8] (SnpMatcher.java:356) - 15: Processing Gene [Accession#: U59913] ...
06 Dec 2004 10:40:28,448 [Thread-8] (SnpMatcher.java:356) - 16: Processing Gene [Accession#: U60325] ...
06 Dec 2004 10:40:43,417 [Thread-8] (SnpMatcher.java:356) - 17: Processing Gene [Accession#: U62293] ...
06 Dec 2004 10:40:43,963 [Thread-8] (SnpMatcher.java:356) - 18: Processing Gene [Accession#: U70981] ...
06 Dec 2004 10:40:44,120 [Thread-8] (SnpMatcher.java:384) - SNP Detection error occured for [Gene ID: U70981, Locus-link: 3598]
06 Dec 2004 10:40:44,120 [Thread-8] (SnpMatcher.java:387) - Error details ...
06 Dec 2004 10:40:44,120 [Thread-8] (SnpMatcher.java:388) - java.lang.StringIndexOutOfBoundsException: String index out of range: -1
06 Dec 2004 10:40:44,120 [Thread-8] (SnpMatcher.java:356) - 19: Processing Gene [Accession#: U73737] ...
06 Dec 2004 10:40:44,557 [Thread-8] (SnpMatcher.java:384) - SNP Detection error occured for [Gene ID: U73737, Locus-link: ---]
06 Dec 2004 10:40:44,557 [Thread-8] (SnpMatcher.java:387) - Error details ...
06 Dec 2004 10:40:44,557 [Thread-8] (SnpMatcher.java:388) - java.lang.StringIndexOutOfBoundsException: String index out of range: -1
06 Dec 2004 10:40:44,557 [Thread-8] (SnpMatcher.java:356) - 20: Processing Gene [Accession#: U81787] ...
06 Dec 2004 10:40:53,667 [Thread-8] (SnpMatcher.java:356) - 21: Processing Gene [Accession#: U81787] ...
06 Dec 2004 10:40:57,714 [Thread-8] (SnpMatcher.java:356) - 22: Processing Gene [Accession#: Y09305] ...
06 Dec 2004 10:40:58,901 [Thread-8] (SnpMatcher.java:356) - 23: Processing Gene [Accession#: U85611] ...
06 Dec 2004 10:41:04,823 [Thread-8] (SnpMatcher.java:356) - 24: Processing Gene [Accession#: J00219] ...
06 Dec 2004 10:41:08,651 [Thread-8] (SnpMatcher.java:356) - 25: Processing Gene [Accession#: V00542] ...
06 Dec 2004 10:41:09,057 [Thread-8] (SnpMatcher.java:384) - SNP Detection error occured for [Gene ID: V00542, Locus-link: ---]
06 Dec 2004 10:41:09,057 [Thread-8] (SnpMatcher.java:387) - Error details ...
06 Dec 2004 10:41:09,057 [Thread-8] (SnpMatcher.java:388) - java.lang.StringIndexOutOfBoundsException: String index out of range: -1
06 Dec 2004 10:41:09,057 [Thread-8] (SnpMatcher.java:356) - 26: Processing Gene [Accession#: X02158] ...
06 Dec 2004 10:41:17,698 [Thread-8] (SnpMatcher.java:356) - 27: Processing Gene [Accession#: X02612] ...
06 Dec 2004 10:41:19,354 [Thread-8] (SnpMatcher.java:356) - 28: Processing Gene [Accession#: X02612] ...
06 Dec 2004 10:41:22,792 [Thread-8] (SnpMatcher.java:356) - 29: Processing Gene [Accession#: U41068] ...
06 Dec 2004 10:41:27,604 [Thread-8] (GeneInfo.java:71) - Probe(Probe ID:1026_s_at; X: 346; Y: 611) doesn't exist in gene-sequence(Gene Ident: U41068; Locus ID: 1302; GI: )
06 Dec 2004 10:41:27,604 [Thread-8] (GeneInfo.java:71) - Probe(Probe ID:1026_s_at; X: 501; Y: 539) doesn't exist in gene-sequence(Gene Ident: U41068; Locus ID: 1302; GI: )
06 Dec 2004 10:41:27,604 [Thread-8] (SnpMatcher.java:356) - 30: Processing Gene [Accession#: U41068] ...
06 Dec 2004 10:41:28,917 [Thread-8] (SnpMatcher.java:356) - 31: Processing Gene [Accession#: U43431] ...
06 Dec 2004 10:41:44,011 [Thread-8] (SnpMatcher.java:356) - 32: Processing Gene [Accession#: U07794] ...
06 Dec 2004 10:41:44,604 [Thread-8] (SnpMatcher.java:356) - 33: Processing Gene [Accession#: Y09306] ...
06 Dec 2004 10:41:47,761 [Thread-8] (SnpMatcher.java:356) - 34: Processing Gene [Accession#: U07806] ...
06 Dec 2004 10:41:59,620 [Thread-8] (SnpMatcher.java:356) - 35: Processing Gene [Accession#: U09564] ...
06 Dec 2004 10:42:02,792 [Thread-8] (SnpMatcher.java:356) - 36: Processing Gene [Accession#: U11872] ...
06 Dec 2004 10:42:03,292 [Thread-8] (SnpMatcher.java:356) - 37: Processing Gene [Accession#: U11872] ...
06 Dec 2004 10:42:03,808 [Thread-8] (SnpMatcher.java:356) - 38: Processing Gene [Accession#: U14394] ...
06 Dec 2004 10:42:37,636 [Thread-8] (SnpMatcher.java:356) - 39: Processing Gene [Accession#: U14394] ...
06 Dec 2004 10:42:58,074 [Thread-8] (SnpMatcher.java:356) - 40: Processing Gene [Accession#: U14407] ...
06 Dec 2004 10:42:59,746 [Thread-8] (SnpMatcher.java:356) - 41: Processing Gene [Accession#: U19180] ...
06 Dec 2004 10:43:17,886 [Thread-8] (SnpMatcher.java:356) - 42: Processing Gene [Accession#: U19247] ...
06 Dec 2004 10:43:19,074 [Thread-8] (SnpMatcher.java:356) - 43: Processing Gene [Accession#: U22431] ...
06 Dec 2004 10:43:24,230 [Thread-8] (SnpMatcher.java:356) - 44: Processing Gene [Accession#: Z19585] ...
06 Dec 2004 10:43:29,027 [Thread-8] (SnpMatcher.java:356) - 45: Processing Gene [Accession#: U23435] ...
06 Dec 2004 10:43:34,027 [Thread-8] (SnpMatcher.java:356) - 46: Processing Gene [Accession#: U26403] ...
06 Dec 2004 10:43:34,527 [Thread-8] (SnpMatcher.java:356) - 47: Processing Gene [Accession#: U27185] ...
06 Dec 2004 10:43:38,808 [Thread-8] (SnpMatcher.java:356) - 48: Processing Gene [Accession#: U27516] ...
06 Dec 2004 10:43:54,433 [Thread-8] (SnpMatcher.java:356) - 49: Processing Gene [Accession#: U31556] ...
06 Dec 2004 10:43:57,902 [AWT-EventQueue-0] (AffyMapsDetectorUI.java:313) - ^^^^^^^^^^^^^^ Stop Execution ^^^^^^^^^^^^^^^^
06 Dec 2004 10:43:58,918 [Thread-8] (SnpMatcher.java:347) - SNP Detection stopped.
06 Dec 2004 10:43:58,933 [Thread-8] (SnpMatcher.java:438) - It is safe to exit AffyMAPSDetector or start SNP Detection process again.
06 Dec 2004 11:44:54,597 [main] (ResourceLoader.java:31) -
06 Dec 2004 11:44:54,613 [main] (ResourceLoader.java:32) - AffyMAPSDetector: New Session Started ....
06 Dec 2004 11:44:54,613 [main] (ResourceLoader.java:33) - Log4j configured successfully (loaded "log4j_config.properties" file.)
06 Dec 2004 11:48:13,567 [Thread-4] (AffyMapsDetectorUI.java:543) - Loading Gene information/annotation file ...
06 Dec 2004 11:48:14,521 [Thread-4] (AffyMapsDetectorUI.java:555) - Dropping Line:"AFFX-hum_alu_at U14573 " [line parse error]
06 Dec 2004 11:48:14,521 [Thread-4] (AffyMapsDetectorUI.java:556) - java.lang.ArrayIndexOutOfBoundsException: 3
06 Dec 2004 11:48:14,521 [Thread-4] (AffyMapsDetectorUI.java:599) - Loading Probeset information file ...
06 Dec 2004 11:48:56,021 [Thread-5] (SnpDetector.java:33) - length of /SNP/snp_ref.cgi?locusId= is: 25
06 Dec 2004 11:48:56,036 [Thread-5] (SnpMatcher.java:356) - 1: Processing Gene [Accession#: X60188] ...
06 Dec 2004 11:49:05,583 [Thread-5] (SnpMatcher.java:356) - 2: Processing Gene [Accession#: X60957] ...
06 Dec 2004 11:49:09,568 [Thread-5] (SnpMatcher.java:356) - 3: Processing Gene [Accession#: X65962] ...
06 Dec 2004 11:49:10,068 [Thread-5] (SnpMatcher.java:356) - 4: Processing Gene [Accession#: X68149] ...
06 Dec 2004 11:49:25,677 [Thread-5] (SnpMatcher.java:356) - 5: Processing Gene [Accession#: X68149] ...
06 Dec 2004 11:49:36,443 [Thread-5] (SnpMatcher.java:356) - 6: Processing Gene [Accession#: X68277] ...
06 Dec 2004 11:49:41,521 [Thread-5] (SnpMatcher.java:356) - 7: Processing Gene [Accession#: X07820] ...
06 Dec 2004 11:49:44,787 [Thread-5] (SnpMatcher.java:356) - 8: Processing Gene [Accession#: U48705] ...
06 Dec 2004 11:49:55,677 [Thread-5] (SnpMatcher.java:356) - 9: Processing Gene [Accession#: U50648] ...
06 Dec 2004 11:50:00,474 [Thread-5] (SnpMatcher.java:356) - 10: Processing Gene [Accession#: U51004] ...
06 Dec 2004 11:50:04,678 [Thread-5] (SnpMatcher.java:356) - 11: Processing Gene [Accession#: Y08200] ...
06 Dec 2004 11:50:09,646 [Thread-5] (SnpMatcher.java:356) - 12: Processing Gene [Accession#: U53442] ...
06 Dec 2004 11:50:14,662 [Thread-5] (SnpMatcher.java:356) - 13: Processing Gene [Accession#: U54778] ...
06 Dec 2004 11:50:29,584 [Thread-5] (SnpMatcher.java:356) - 14: Processing Gene [Accession#: U57317] ...
06 Dec 2004 11:50:30,709 [Thread-5] (GeneInfo.java:71) - Probe(Probe ID:1012_at; X: 629; Y: 537) doesn't exist in gene-sequence(Gene Ident: U57317; Locus ID: 8850; GI: )
06 Dec 2004 11:50:30,709 [Thread-5] (SnpMatcher.java:356) - 15: Processing Gene [Accession#: U59913] ...
06 Dec 2004 11:50:34,662 [Thread-5] (SnpMatcher.java:356) - 16: Processing Gene [Accession#: U60325] ...
06 Dec 2004 11:50:44,459 [Thread-5] (SnpMatcher.java:356) - 17: Processing Gene [Accession#: U62293] ...
06 Dec 2004 11:50:45,068 [Thread-5] (SnpMatcher.java:356) - 18: Processing Gene [Accession#: U70981] ...
06 Dec 2004 11:50:45,381 [Thread-5] (SnpMatcher.java:387) - SNP Detection error occured for [Gene ID: U70981, Locus-link: 3598]
06 Dec 2004 11:50:45,381 [Thread-5] (SnpMatcher.java:390) - Error details ...
java.lang.RuntimeException: No SNPs in GenBank (locus_id=3598) when searching by: snp in gene region.
at affychip.snpdetector.model.SnpDetector.parseDataForSnps(SnpDetector.java:247)
at affychip.snpdetector.model.SnpDetector.dectectSnpsFor(SnpDetector.java:228)
at affychip.snpdetector.model.SnpMatcher.startMatch(SnpMatcher.java:385)
at affychip.snpdetector.ui.AffyMapsDetectorUI$12.run(AffyMapsDetectorUI.java:300)
at java.util.TimerThread.mainLoop(Timer.java:432)
at java.util.TimerThread.run(Timer.java:382)
06 Dec 2004 11:50:45,397 [Thread-5] (SnpMatcher.java:356) - 19: Processing Gene [Accession#: U73737] ...
06 Dec 2004 11:50:45,397 [Thread-5] (SnpDetector.java:126) - Finding Locus-link for Accession No.: U73737
06 Dec 2004 11:50:45,443 [Thread-5] (SnpDetector.java:152) - 2956">