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["CNAT-GLAD reference set 214"]
[]
["Sample ID","Aberration type","Chromosome","Start SNP ID","Start Position (bp)","End SNP ID","End Position (bp)","Length (bp)","Copy number log2-ratio ","Number of SNPs","Number of heterozygous SNPs","False positive deletion (F)","Array type","p-value"]
["6235c","del",10,"SNP_A-1690155",104408646,"SNP_A-1678974",106134447,1725801,-1.5031,19,0,"NA","Xba",{"v":3.58328e-10,"d":"3.58E-10"}]
["6235c","del",5,"SNP_A-1668549",173524966,"SNP_A-1723235",173589563,64597,-1.91863,4,0,"NA","Hind",{"v":0.00236129,"d":"2.36E-03"}]
["6235c","del",6,"SNP_A-1668568",6854799,"SNP_A-1647980",6900327,45528,-2.21601,5,0,"NA","Xba",{"v":0.00304359,"d":"3.04E-03"}]
["6235c","del",7,"SNP_A-1642900",63283928,"SNP_A-1655934",63316923,32995,-1.99502,4,0,"NA","Hind",{"v":0.000313773,"d":"3.14E-04"}]
["6235f","dup",4,"SNP_A-1758024",171905313,"SNP_A-1730008",171909764,4451,1.92758,4,"NA","NA","Xba",{"v":0.000178008,"d":"1.78E-04"}]
["6235f","del",11,"SNP_A-1645288",15199943,"SNP_A-1669311",15200756,813,-1.47472,4,0,"NA","Xba",{"v":0.000101408,"d":"1.01E-04"}]
["6235f","del",15,"SNP_A-1743847",86586302,"SNP_A-1672320",86669305,83003,-1.69988,4,1,"F","Xba",{"v":0.0570794,"d":"5.71E-02"}]
["6235f","del",2,"SNP_A-1662314",9302980,"SNP_A-1742659",9581938,278958,-1.11692,5,0,"NA","Xba",{"v":0.0046542,"d":"4.65E-03"}]
["6235f","del",2,"SNP_A-1704317",44288776,"SNP_A-1657463",44322268,33492,-1.09923,5,2,"F","Xba",{"v":3.94832e-05,"d":"3.95E-05"}]
["6235f","del",2,"SNP_A-1758179",8179329,"SNP_A-1642905",8658000,478671,-0.891733,9,2,"F","Xba",{"v":0.000677768,"d":"6.78E-04"}]
["6235f","del",3,"SNP_A-1705027",8980574,"SNP_A-1690427",9045495,64921,-1.61848,4,0,"NA","Xba",{"v":0.000411769,"d":"4.12E-04"}]
["6235f","del",6,"SNP_A-1668568",6854799,"SNP_A-1647980",6900327,45528,-1.70444,5,1,"F","Xba",{"v":0.0034913,"d":"3.49E-03"}]
["6235m","del",11,"SNP_A-1658882",126357648,"SNP_A-1652852",126402187,44539,-1.2283,6,1,"F","Xba",{"v":0.00655506,"d":"6.56E-03"}]
["6235m","del",2,"SNP_A-1661476",159901152,"SNP_A-1758569",159908397,7245,-1.90426,4,0,"NA","Xba",{"v":0.0188748,"d":"1.89E-02"}]
["6235m","del",6,"SNP_A-1668568",6854799,"SNP_A-1647980",6900327,45528,-2.00155,5,0,"NA","Xba",{"v":0.001445,"d":"1.45E-03"}]
["6235m","del",6,"SNP_A-1691786",134778715,"SNP_A-1729444",134780465,1750,-1.78953,4,0,"NA","Xba",{"v":0,"d":"0.00E+00"}]
["3476c","dup",13,"SNP_A-1742978",93605357,"SNP_A-1743444",93605666,309,1.23819,4,"NA","NA","Hind",{"v":0.00131584,"d":"1.32E-03"}]
["3476c","del",1,"SNP_A-1647584",83240652,"SNP_A-1705795",83308133,67481,-1.20125,7,0,"NA","Xba",{"v":2.58961e-05,"d":"2.59E-05"}]
["3476c","del",4,"SNP_A-1698344",82282746,"SNP_A-1694910",93037891,10755145,-0.984291,327,1,"NA","Hind",{"v":0,"d":"0.00E+00"}]
["3476c","del",4,"SNP_A-1751647",82372063,"SNP_A-1684950",93027491,10655428,-1.31372,299,0,"NA","Xba",{"v":0,"d":"0.00E+00"}]
["3476f","del",15,"SNP_A-1713638",19208413,"SNP_A-1729906",19989036,780623,-1.04542,5,1,"F","Xba",{"v":0.000975854,"d":"9.76E-04"}]
["3476f","del",4,"SNP_A-1695791",172642617,"SNP_A-1672480",172864304,221687,-1.35319,6,0,"NA","Xba",{"v":0.00509951,"d":"5.10E-03"}]
["3476m","del",1,"SNP_A-1647584",83240652,"SNP_A-1681220",83282937,42285,-0.946695,6,0,"NA","Xba",{"v":0.00153047,"d":"1.53E-03"}]
["3476m","del",13,"SNP_A-1651989",107567498,"SNP_A-1653605",107568012,514,-1.05315,4,0,"NA","Hind",{"v":0.00447436,"d":"4.47E-03"}]
["3476m","del",13,"SNP_A-1706264",68110347,"SNP_A-1706778",68111237,890,-1.24218,5,0,"NA","Hind",{"v":0.00183216,"d":"1.83E-03"}]
["3476m","del",5,"SNP_A-1656757",9955403,"SNP_A-1746959",9974028,18625,-1.06713,4,0,"NA","Xba",{"v":0.00422686,"d":"4.23E-03"}]
["7353c","del",2,"SNP_A-1641784",117434972,"SNP_A-1647327",117439461,4489,-1.2445,7,0,"NA","Hind",{"v":0.000280825,"d":"2.81E-04"}]
["7353c","del",4,"SNP_A-1704322",169211424,"SNP_A-1713130",169253953,42529,-1.24429,4,0,"NA","Hind",{"v":0.000119794,"d":"1.20E-04"}]
["7353c","del",4,"SNP_A-1744735",104570801,"SNP_A-1749619",104572220,1419,-1.86723,4,0,"NA","Xba",{"v":0.00554491,"d":"5.54E-03"}]
["7353f","del",4,"SNP_A-1650206",104570584,"SNP_A-1749619",104572220,1636,-1.9341,5,0,"NA","Xba",{"v":0,"d":"0.00E+00"}]
["7353m","del",10,"SNP_A-1717262",101623053,"SNP_A-1678291",101917037,293984,-1.0061,4,0,"NA","Hind",{"v":0.00912652,"d":"9.13E-03"}]
["7353m","del",16,"SNP_A-1660306",32411529,"SNP_A-1730608",33463919,1052390,-1.10025,4,2,"F","Hind",{"v":0.0133357,"d":"1.33E-02"}]
["7353m","del",2,"SNP_A-1641784",117434972,"SNP_A-1647327",117439461,4489,-1.1599,7,0,"NA","Hind",{"v":0.00032156,"d":"3.22E-04"}]
["6434s","del",10,"SNP_A-1706986",59401117,"SNP_A-1707582",59401763,646,-1.54601,6,0,"NA","Hind",{"v":6.82937e-06,"d":"6.83E-06"}]
["0231c","del",15,"SNP_A-1713638",19208413,"SNP_A-1729906",19989036,780623,-1.3342,5,1,"F","Xba",{"v":0.00183216,"d":"1.83E-03"}]
["0231c","del",9,"SNP_A-1644522",32008100,"SNP_A-1646608",32049100,41000,-0.776853,5,2,"F","Xba",{"v":2.45893e-05,"d":"2.46E-05"}]
["0231f","del",1,"SNP_A-1689080",236516428,"SNP_A-1718169",236517266,838,-1.77715,4,1,"F","Xba",{"v":0.0196078,"d":"1.96E-02"}]
["0231f","del",10,"SNP_A-1726128",55708837,"SNP_A-1721632",55709225,388,-1.85318,4,1,"F","Xba",{"v":0.00199093,"d":"1.99E-03"}]
["0231f","del",12,"SNP_A-1745924",3757562,"SNP_A-1723624",3811676,54114,-1.32394,5,2,"F","Xba",{"v":0.00219733,"d":"2.20E-03"}]
["0231f","del",6,"SNP_A-1747191",102359520,"SNP_A-1685186",102472246,112726,-1.56713,8,0,"NA","Xba",{"v":0.000421916,"d":"4.22E-04"}]
["0231f","del",9,"SNP_A-1651034",115281241,"SNP_A-1693493",115494173,212932,-1.22408,4,1,"F","Xba",{"v":0,"d":"0.00E+00"}]
["0231m","del",1,"SNP_A-1689080",236516428,"SNP_A-1718169",236517266,838,-1.22896,4,1,"F","Xba",{"v":0.00184871,"d":"1.85E-03"}]
["0231m","del",1,"SNP_A-1731975",104571918,"SNP_A-1665010",104678500,106582,-1.33003,4,4,"F","Xba",{"v":0.00464737,"d":"4.65E-03"}]
["0231m","del",13,"SNP_A-1718679",54758119,"SNP_A-1653102",55047888,289769,-1.1605,9,0,"NA","Xba",{"v":2.5554e-06,"d":"2.56E-06"}]
["0231m","del",15,"SNP_A-1713638",19208413,"SNP_A-1713834",19988127,779714,-1.13215,4,1,"F","Xba",{"v":0.0273285,"d":"2.73E-02"}]
["0231m","del",2,"SNP_A-1734346",50994554,"SNP_A-1711580",51026355,31801,-0.885451,6,2,"F","Xba",{"v":0.000857145,"d":"8.57E-04"}]
["0231m","del",5,"SNP_A-1751805",100835176,"SNP_A-1727867",100886518,51342,-1.25374,5,0,"NA","Xba",{"v":0.00219733,"d":"2.20E-03"}]
["0231m","del",6,"SNP_A-1754658",72764602,"SNP_A-1733626",73043432,278830,-1.02971,6,4,"F","Xba",{"v":0.00877073,"d":"8.77E-03"}]
["0231m","del",7,"SNP_A-1717659",19317739,"SNP_A-1754178",19336733,18994,-1.93355,4,2,"F","Xba",{"v":0.000522843,"d":"5.23E-04"}]
["0231m","del",8,"SNP_A-1658092",137820222,"SNP_A-1742931",137892295,72073,-1.10263,12,0,"NA","Xba",{"v":2.60328e-09,"d":"2.60E-09"}]
["0231m","del",9,"SNP_A-1644522",32008100,"SNP_A-1646608",32049100,41000,-1.15136,5,2,"F","Xba",{"v":0.001827,"d":"1.83E-03"}]
["0337c","dup",15,"SNP_A-1713638",19208413,"SNP_A-1729906",19989036,780623,1.49012,5,"NA","NA","Xba",{"v":0.0339264,"d":"3.39E-02"}]
["0337c","del",10,"SNP_A-1722726",95141451,"SNP_A-1676118",95160103,18652,-1.22255,4,1,"F","Xba",{"v":0.00865866,"d":"8.66E-03"}]
["0337c","del",13,"SNP_A-1661649",63672412,"SNP_A-1663573",63675702,3290,-1.201,6,0,"NA","Hind",{"v":0.0034913,"d":"3.49E-03"}]
["0337c","del",3,"SNP_A-1708229",7927593,"SNP_A-1708561",7928534,941,-1.28844,4,2,"F","Hind",{"v":0.0001181,"d":"1.18E-04"}]
["0337c","del",6,"SNP_A-1732538",95515038,"SNP_A-1649558",95629083,114045,-1.50962,4,0,"NA","Xba",{"v":0.000449249,"d":"4.49E-04"}]
["0337m","del",10,"SNP_A-1749119",19979248,"SNP_A-1681508",20181715,202467,-1.04896,4,0,"NA","Xba",{"v":0.0648059,"d":"6.48E-02"}]
["0337m","del",6,"SNP_A-1732538",95515038,"SNP_A-1649558",95629083,114045,-1.44858,4,0,"NA","Xba",{"v":6.38613e-05,"d":"6.39E-05"}]
["5495c","del",16,"SNP_A-1720828",52120011,"SNP_A-1721252",52120745,734,-1.65013,4,0,"NA","Hind",{"v":6.36152e-10,"d":"6.36E-10"}]
["5495c","del",2,"SNP_A-1681535",83315058,"SNP_A-1743906",83852858,537800,-1.3064,15,0,"NA","Hind",{"v":5.80096e-09,"d":"5.80E-09"}]
["5495c","del",2,"SNP_A-1697414",83574805,"SNP_A-1680238",83788879,214074,-1.31215,9,0,"NA","Xba",{"v":0.000104566,"d":"1.05E-04"}]
["5495m","del",10,"SNP_A-1758987",3143888,"SNP_A-1680450",3171577,27689,-1.97274,4,1,"F","Xba",{"v":0.000459322,"d":"4.59E-04"}]
["5495m","del",21,"SNP_A-1649460",45495180,"SNP_A-1663886",45958411,463231,-1.68433,6,0,"NA","Xba",{"v":0.00690929,"d":"6.91E-03"}]
["4395c","del",18,"SNP_A-1666744",64003618,"SNP_A-1662286",64047068,43450,-1.48225,8,0,"NA","Xba",{"v":3.89138e-05,"d":"3.89E-05"}]
["4395c","del",19,"SNP_A-1657667",1888178,"SNP_A-1702852",2705840,817662,-1.51336,4,0,"NA","Hind",{"v":0.0266478,"d":"2.66E-02"}]
["8379c","dup",10,"SNP_A-1680172",259695,"SNP_A-1662710",24070805,23811110,0.812916,540,"NA","NA","Xba",{"v":0,"d":"0.00E+00"}]
["8379c","dup",10,"SNP_A-1718308",284953,"SNP_A-1648317",23886863,23601910,0.900049,609,"NA","NA","Hind",{"v":0,"d":"0.00E+00"}]
["8379c","dup",15,"SNP_A-1711003",19852603,"SNP_A-1687995",19943075,90472,1.5207,5,"NA","NA","Hind",{"v":0.000342616,"d":"3.43E-04"}]
["8379c","dup",15,"SNP_A-1713638",19208413,"SNP_A-1677486",21301783,2093370,0.698279,14,"NA","NA","Xba",{"v":3.47393e-06,"d":"3.47E-06"}]
["8379c","del",13,"SNP_A-1706264",68110347,"SNP_A-1706596",68110829,482,-1.57902,4,0,"NA","Hind",{"v":0.00189438,"d":"1.89E-03"}]
["8379m","del",13,"SNP_A-1706264",68110347,"SNP_A-1706596",68110829,482,-1.49544,4,2,"F","Hind",{"v":0.002605,"d":"2.61E-03"}]
["8379m","del",22,"SNP_A-1676865",23798080,"SNP_A-1737614",24246337,448257,-0.955314,6,1,"F","Hind",{"v":0.00492623,"d":"4.93E-03"}]
["6789c","del",14,"SNP_A-1725226",82728476,"SNP_A-1716597",82796472,67996,-1.31425,5,0,"NA","Xba",{"v":0.000178008,"d":"1.78E-04"}]
["6789c","del",5,"SNP_A-1656757",9955403,"SNP_A-1746959",9974028,18625,-1.36812,4,0,"NA","Xba",{"v":0.00354024,"d":"3.54E-03"}]
["6789f","del",15,"SNP_A-1713638",19208413,"SNP_A-1729906",19989036,780623,-1.02948,5,0,"NA","Xba",{"v":9.00139e-05,"d":"9.00E-05"}]
["6789f","del",5,"SNP_A-1656757",9955403,"SNP_A-1746959",9974028,18625,-1.3493,4,0,"NA","Xba",{"v":0.00123655,"d":"1.24E-03"}]
["6789m","del",13,"SNP_A-1706264",68110347,"SNP_A-1706596",68110829,482,-1.35419,4,0,"NA","Hind",{"v":0.00439144,"d":"4.39E-03"}]
["6789m","del",14,"SNP_A-1664241",82734864,"SNP_A-1720604",82799356,64492,-1.22051,4,0,"NA","Hind",{"v":0.000589407,"d":"5.89E-04"}]
["6789m","del",3,"SNP_A-1680857",1470378,"SNP_A-1715508",1564461,94083,-0.93597,6,0,"NA","Hind",{"v":0.000923069,"d":"9.23E-04"}]
["0899c","del",13,"SNP_A-1742754",94693770,"SNP_A-1733671",94810791,117021,-0.978764,6,1,"F","Hind",{"v":0.000936186,"d":"9.36E-04"}]
["0899c","del",20,"SNP_A-1755577",5226869,"SNP_A-1643246",5231256,4387,-2.12766,5,1,"F","Hind",{"v":6.40208e-06,"d":"6.40E-06"}]
["0899c","del",4,"SNP_A-1690690",17284568,"SNP_A-1750444",17373956,89388,-1.06626,4,2,"F","Hind",{"v":0.00473765,"d":"4.74E-03"}]
["0899c","del",6,"SNP_A-1650003",20755639,"SNP_A-1674920",20846555,90916,-1.09338,4,0,"NA","Hind",{"v":0.000922297,"d":"9.22E-04"}]
["0899c","del",6,"SNP_A-1743586",138573197,"SNP_A-1736238",138811539,238342,-1.35989,4,0,"NA","Hind",{"v":0.00211378,"d":"2.11E-03"}]
["0899c","del",8,"SNP_A-1642164",52883243,"SNP_A-1651119",52919646,36403,-1.40933,4,1,"F","Hind",{"v":0.00112906,"d":"1.13E-03"}]
["0899c","del",8,"SNP_A-1653949",33391800,"SNP_A-1738670",33785222,393422,-1.29937,5,0,"NA","Hind",{"v":0.0524942,"d":"5.25E-02"}]
["0899f","dup",6,"SNP_A-1689893",6666712,"SNP_A-1645742",6855090,188378,1.61884,4,"NA","NA","Xba",{"v":0.0246659,"d":"2.47E-02"}]
["0899f","del",4,"SNP_A-1675025",127169254,"SNP_A-1669971",127188363,19109,-1.86114,4,0,"NA","Xba",{"v":0.0329534,"d":"3.30E-02"}]
["0899m","dup",14,"SNP_A-1745948",19285288,"SNP_A-1710646",19490178,204890,1.39268,4,"NA","NA","Xba",{"v":0.0175247,"d":"1.75E-02"}]
["0899m","dup",15,"SNP_A-1713638",19208413,"SNP_A-1729906",19989036,780623,2.17662,5,"NA","NA","Xba",{"v":0.0212307,"d":"2.12E-02"}]
["0899m","del",10,"SNP_A-1756380",120133148,"SNP_A-1682399",120145723,12575,-1.49552,4,3,"F","Hind",{"v":0.000549599,"d":"5.50E-04"}]
["0899m","del",13,"SNP_A-1742754",94693770,"SNP_A-1665559",94696512,2742,-1.20432,4,1,"F","Hind",{"v":0.00694889,"d":"6.95E-03"}]
["0899m","del",2,"SNP_A-1728832",200265962,"SNP_A-1737582",200283068,17106,-1.28763,5,2,"F","Hind",{"v":0.000798085,"d":"7.98E-04"}]
["0899m","del",20,"SNP_A-1755577",5226869,"SNP_A-1643246",5231256,4387,-2.90004,5,0,"NA","Hind",{"v":2.59097e-07,"d":"2.59E-07"}]
["0899m","del",4,"SNP_A-1689279",17283162,"SNP_A-1744878",17358531,75369,-1.26282,4,0,"NA","Hind",{"v":0.026247,"d":"2.62E-02"}]
["0899m","del",4,"SNP_A-1731134",126064807,"SNP_A-1681275",126184476,119669,-1.35432,7,4,"F","Hind",{"v":0.001827,"d":"1.83E-03"}]
["0899m","del",6,"SNP_A-1727121",10997041,"SNP_A-1663125",11063855,66814,-1.67413,4,0,"NA","Hind",{"v":0.000514458,"d":"5.14E-04"}]
["3553c","del",5,"SNP_A-1703302",54293292,"SNP_A-1705190",54295264,1972,-1.52816,4,0,"NA","Hind",{"v":0.00217856,"d":"2.18E-03"}]
["3553c","del",6,"SNP_A-1650003",20755639,"SNP_A-1674920",20846555,90916,-1.3496,4,2,"F","Hind",{"v":0.00140201,"d":"1.40E-03"}]
["3553c","del",6,"SNP_A-1727121",10997041,"SNP_A-1663125",11063855,66814,-1.6462,4,0,"NA","Hind",{"v":0.000386345,"d":"3.86E-04"}]
["3553c","del",7,"SNP_A-1691577",35166137,"SNP_A-1732903",35282264,116127,-1.52152,4,0,"NA","Hind",{"v":0.000225597,"d":"2.26E-04"}]
["3553c","del",8,"SNP_A-1730343",6003550,"SNP_A-1724947",6259564,256014,-1.29667,5,1,"F","Hind",{"v":0.00742652,"d":"7.43E-03"}]
["3553c","del",8,"SNP_A-1756598",18759489,"SNP_A-1646445",18773221,13732,-1.39821,6,1,"F","Hind",{"v":0.00386357,"d":"3.86E-03"}]
["3553f","del",1,"SNP_A-1697120",215135035,"SNP_A-1663506",215135553,518,-2.94646,4,0,"NA","Xba",{"v":0.000280825,"d":"2.81E-04"}]
["3553f","del",7,"SNP_A-1683404",111686808,"SNP_A-1690541",111691072,4264,-2.39205,5,1,"F","Xba",{"v":0.0405876,"d":"4.06E-02"}]
["3553m","del",1,"SNP_A-1656560",82884015,"SNP_A-1656882",82884509,494,-1.33884,4,1,"F","Hind",{"v":0.00307147,"d":"3.07E-03"}]
["3553m","del",1,"SNP_A-1710791",234057746,"SNP_A-1699442",234138740,80994,-1.52935,4,2,"F","Hind",{"v":0.00232928,"d":"2.33E-03"}]
["3553m","del",10,"SNP_A-1656390",84672905,"SNP_A-1713961",84741572,68667,-1.32873,4,0,"NA","Hind",{"v":0.00311883,"d":"3.12E-03"}]
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