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{"sheet":"Sheet1","index":0,"n_rows":173,"n_cols":6,"rows_kept":173,"flags":["formulas_cached_only"]}
["Ontology Results for Alon Data"]
[]
["Cheng and Churchs Alg"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[2,72,0.00477,"peroxiredoxin activity (2)",0.00629,"repsonse to oxidative stress (4)"]
[3,11,0.00702,"deoxyguanosine kinase activity(1)",0.00702,"guanosine metabolic process (1)"]
[4,6,0.00281,"tyrosine 3-monooxygenase activity (1)",0.00281,"catecholamine biosynthetic process (1)"]
[5,5,0.00281,"single-stranded RNA binding (1)",0.00281,"RNA destabilization (1)"]
[6,3,0.0014,"GDP-dissociation inhibitor activity (1)",0.0014,"G-protein signaling (1)"]
[8,3,null,"none",null,"none"]
[9,2,null,"none",null,"none"]
[10,3,0.0014,"fucosyltransferase activity",0.0028,"L-fucose catabolic process"]
[]
["ISA"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,128,0.00185,"transmembrane receptor protein tyrosine phosphatase activity (4)",0.00592,"negative regulation of protein kinase activity (2)"]
[2,111,0.00369,"cAMP-dependent protein kinase activity (2)",0.00348,"transcription(1)"]
[3,98,{"v":0.00053,"d":"5.30E-04"},"threonine endopeptidase activity (5)",0.00108,"ubiquitin-dependent protein catabolic process (6)"]
[4,130,{"v":0.00047,"d":"4.70E-04"},"vinculin binding (3)",0.00614,"transforming growth factor beta receptor signaling pathway (2)"]
[5,97,{"v":0.0005,"d":"5.00E-04"},"threonine endopeptidase activity (5)",0.00102,"ubiquitin-dependent protein catabolic process (6)"]
[6,96,{"v":0.00095,"d":"9.50E-04"},"nucleotide binding (28)",{"v":0.00096,"d":"9.60E-04"},"ubiquitin-dependent protein catabolic process (6)"]
[7,81,{"v":0.00445,"d":"4.45E-03"},"cadmium ion binding (2)",null,"none"]
[8,148,{"v":0.00404,"d":"4.04E-03"},"ligase activity (6)",0.00204,"regulation of small GTPase mediated signal transduction (3)"]
[9,147,{"v":0.00386,"d":"3.86E-03"},"ligase activity (6)",0.00198,"regulation of small GTPase mediated signal transduction (3)"]
[10,87,{"v":0.0003,"d":"3.00E-04"},"transcription activator activity (7)",0.00416,"ubiquitin-dependent protein catabolic process (5)"]
[]
["OPSM"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,2,null,"none",null,"none"]
[2,3,0.00421,"mRNA 3'-UTR binding (1)",{"v":0.00037,"d":"3.70E-04"},"cell differentiation (2)"]
[3,4,0.0021,"formlytetrahydrofolate dehydrogenase activity (1)",0.0021,"10-formyltetrahydrofolate catabolic process (1)"]
[4,6,0.00421,"phosphatase binding (1)",{"v":0.00016,"d":"1.60E-04"},"cell-cell adhesion (2)"]
[5,11,0.00702,"3'-5-' exonuclease activity (1)",0.00702,"regulation of cell redox homeostasis"]
[6,25,null,"none",{"v":0.00027,"d":"2.70E-04"},"mRNA catabolic process (2)"]
[7,48,0.00457,"DNA binding (7)",0.00361,"regulation of small GTPase mediated signal transduction (2)"]
[8,94,{"v":8e-05,"d":"8.00E-05"},"nucleotide binding (27)",{"v":0.00143,"d":"1.43E-03"},"protein amino acid phosphorylation (12)"]
[9,226,0,"ATP binding (40)",{"v":0.0001,"d":"1.00E-04"},"protein amino acid phosphorylation (23)"]
[10,456,0,"actin binding (8)",{"v":0,"d":"0.00E+00"},"Wnt receptor signaling pathway (4)"]
[]
["xMotif"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,562,0.00304,"nucleotide binding (55)",0.00352,"cell migration (6)"]
[2,505,null,"none",0.00248,"cell migration (7)"]
[3,494,null,"none",0.0038,"immune response (32)"]
[4,491,0.00198,"identical protein binding (18)",null,"none"]
[5,480,{"v":3e-05,"d":"3.00E-05"},"extracellular matrix structural constituent (11)",{"v":0.00027,"d":"2.70E-04"},"translation(3)"]
[6,473,null,"none",0.00391,"notch signaling pathway (4)"]
[7,473,0.00705,"protein serine/threonine kinase activity (6)",0.00144,"cell migration (6)"]
[8,471,0.00966,"receptor binding (6)",{"v":0.00079,"d":"7.90E-04"},"immune response (33)"]
[9,467,0.00318,"nucleotide binding (47)",{"v":0.00028,"d":"2.80E-04"},"immune response (36)"]
[10,467,null,"none",{"v":4e-05,"d":"4.00E-05"},"immune response (37)"]
[11,467,null,"none",{"v":0.00389,"d":"3.89E-03"},"immune response (29)"]
[12,462,null,"none",{"v":0.00389,"d":"3.89E-03"},"immune response (29)"]
[]
["OREO"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,97,0,"structural constituent of ribosome (13)",0,"translation (14)"]
[2,41,0,"structural constituent of ribosome (10)",0,"translation (10)"]
[3,114,0,"structural constituent of ribosome (13)",0,"translation (14)"]
[4,69,0,"structural constituent of ribosome (17)",0,"translation (17)"]
[5,153,0,"structural constituent of ribosome (14)",{"v":2e-05,"d":"2.00E-05"},"translation (15)"]
[7,575,0.00348,"structural molecule activity (3)",0.00457,"establishment and/or maintenance of cell polarity (6)"]
[8,1687,0.00241,"structural constituent of ribosome (30)",0.00543,"translation (39)"]
[9,289,{"v":0.00031,"d":"3.10E-04"},"structural constituent of ribosome (16)",0.00117,"translation (17)"]
[]
["nsNMF"]
["Q","genes","p-value","molecular function","p-value","biological process"]
["F1",100,0,"structural constituent of ribosome (27)",0,"translation (25)"]
["F2",100,{"v":0.0001,"d":"1.00E-04"},"stuctural constituent of ribosome (9)",{"v":2e-05,"d":"2.00E-05"},"antigen processing and presentation (6)"]
[]
["SAMBA"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[15,16,{"v":0.00034,"d":"3.40E-04"},"zinc ion binding",{"v":0.00027,"d":"2.70E-04"},"regulation of cell growth"]
[18,10,0.00107,"receptor activity",0.0122,"axon guidance"]
[25,17,0,"structural constituent of ribosome",0,"translation"]
[26,16,0,"structural constituent of ribosome",0,"translation"]
[27,22,0,"structural constituent of ribosome",0,"translation"]
[28,22,0,"structural constituent of ribosome",0,"translation"]
[29,15,0,"structural constituent of ribosome",0,"translation"]
[30,16,0,"structural constituent of ribosome",0,"translation"]
[31,16,0,"structural constituent of ribosome",0,"translation"]
[32,16,0,"structural constituent of ribosome",0,"translation"]
[33,22,0,"structural constituent of ribosome",0,"translation"]
[34,28,0,"structural constituent of ribosome",0,"translation"]
[35,20,0,"structural constituent of ribosome",0,"translation"]
[36,19,0,"structural constituent of ribosome",0,"translation"]
[37,20,0,"structural constituent of ribosome",0,"translation"]
[]
["Ontology Results for Vant Veer Data"]
[]
["nsNMF"]
["Q","genes","p-value","molecular function","p-value","biological process"]
["F1",200,{"v":0.00048,"d":"4.80E-04"},"sugar binding (7)",{"v":0.00059,"d":"5.90E-04"},"immune response (14)"]
["F2",200,0.00824,"symporter activity (5)",0.00253,"fatty acid biosynthetic process (3)"]
[]
["Cheng and Churchs"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[2,44,0.00932,"4-alpha-glucanotransferase (1)",0.00932,"meiotic spindle organization and biogenesis (1)"]
[3,34,null,"none",null,"none"]
[4,37,0.0076,"aminomethyltransferase activity (1)",0.0076,"C21-steroid hormone metabolic process (1)"]
[5,26,0.00564,"acetyl-CoA transporter activity (1)",0.00564,"positive regulation of endothelial cell differentitation (1)"]
[6,34,null,"none",0.00736,"regulation of cytoskeleton organization and biogenesis (1)"]
[7,34,0.00662,"glycine dehydrogenase activity (1)",0.00366,"generation of precursor metabolites and energy (2)"]
[8,32,0.00711,"ceramide kinase activity (1)",0.00711,"icosanoid biosynthetic process (1)"]
[9,30,{"v":0.00589,"d":"5.89E-03"},"3-galactosly-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity (1)",0.00589,"axial mesoderm morphogenesis (1)"]
[10,31,{"v":0.00135,"d":"1.35E-03"},"cytokine activity (3)",0.00662,"macroautophagy (1)"]
[]
["ISA"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,207,{"v":1e-05,"d":"1.00E-05"},"heparin binding (8)",{"v":0.00051,"d":"5.10E-04"},"cell motillity (9)"]
[2,206,{"v":0.0001,"d":"1.00E-04"},"heparin binding (7)",{"v":0.00057,"d":"5.70E-04"},"Notch signaling pathway (4)"]
[3,206,{"v":0.00024,"d":"2.40E-04"},"structural constituent of ribosome (8)",0,"chromosome organization and biogenesis (11)"]
[4,203,{"v":9e-05,"d":"9.00E-05"},"heparin binding (7)",{"v":0.00062,"d":"6.20E-04"},"angiogenesis (6)"]
[5,215,{"v":0.0014,"d":"1.40E-03"},"GDP binding (3)",{"v":0.0041,"d":"4.10E-03"},"G-protein signaling, adenylate cyclase inhibiting pathway (3)"]
[6,210,{"v":0.00493,"d":"4.93E-03"},"vitamin D receptor binding (3)",{"v":0.00041,"d":"4.10E-04"},"chromosome organization and biogenesis (6)"]
[7,207,{"v":1e-05,"d":"1.00E-05"},"oxygen binding (6)",{"v":0.00053,"d":"5.30E-04"},"oxygen transport (3)"]
[8,207,{"v":0.00493,"d":"4.93E-03"},"metabotropic glutamate, GABA-B like receptor activity (2)",{"v":0.00079,"d":"7.90E-04"},"nucleosome assembly (6)"]
[9,203,{"v":6e-05,"d":"6.00E-05"},"vitamin D receptor binding (4)",{"v":0.00169,"d":"1.69E-03"},"C21-steroid hormone biosynthetic process"]
[10,197,{"v":0.0009,"d":"9.00E-04"},"DNA binding (23)",{"v":0,"d":"0.00E+00"},"chromosome organization and biogenesis (sensu Eukaryota) (11)"]
[11,196,{"v":0.00084,"d":"8.40E-04"},"DNA binding (23)",{"v":0,"d":"0.00E+00"},"chromosome organization and biogenesis (sensu Eukaryota) (11)"]
[12,259,{"v":0.0073,"d":"7.30E-03"},"mRNA binding (2)",{"v":0.00252,"d":"2.52E-03"},"DNA damage response, signal transduction by p53 class mediator (2)"]
[13,192,null,"none",{"v":0.00103,"d":"1.03E-03"},"zinc ion transport (3)"]
[14,244,{"v":0.00274,"d":"2.74E-03"},"ErbB-3 class receptor binding (2)",{"v":0.00132,"d":"1.32E-03"},"tricarboxylic acid cycle (3)"]
[15,180,{"v":0.0009,"d":"9.00E-04"},"metal ion binding (6)",{"v":0.00047,"d":"4.70E-04"},"very-long-chain fatty acid metabolic process (3)"]
[]
["OPSM"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,2,0.00368,"receptor signaling protein activity (1)",null,"none"]
[2,3,{"v":0.00049,"d":"4.90E-04"},"MHC class II protein binding (1)",{"v":0.00049,"d":"4.90E-04"},"regulation of macrophage activation (1)"]
[3,5,{"v":0.00073,"d":"7.30E-04"},"interleukin-3 receptor activity (1)",{"v":0.00055,"d":"5.50E-04"},"signal transduction (4)"]
[4,10,0.00588,"chemoattractant activity (1)",0.00196,"regulation of progression through S phase (1)"]
[5,16,0.00319,"interleukin-10 receptor activity (1)",0.00273,"signal transduction (5)"]
[6,35,{"v":4e-05,"d":"4.00E-05"},"C-C chemokine receptor activity (4)",0,"immune response (20)"]
[7,59,{"v":0.00065,"d":"6.50E-04"},"guanyl-nucleotide exchange factor activity",0,"immune response (12)"]
[8,115,{"v":4e-05,"d":"4.00E-05"},"C-C chemokine receptor activity (4)",0,"immune response (20)"]
[9,221,{"v":0.00183,"d":"1.83E-03"},"chemokine activity (5)",{"v":0,"d":"0.00E+00"},"immune response (28)"]
[10,455,{"v":5e-05,"d":"5.00E-05"},"MHC class I receptor activity (7)",0,"immune response (37)"]
[11,995,{"v":7e-05,"d":"7.00E-05"},"chemokine activity (12)",0,"immune response (87)"]
[12,2007,{"v":0.00106,"d":"1.06E-03"},"transmembrane receptor activity (19)",{"v":0,"d":"0.00E+00"},"immune response (114)"]
[]
["OREO"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[1,116,{"v":0.00068,"d":"6.80E-04"},"proteasome activator activity (2)",{"v":0,"d":"0.00E+00"},"immune response (15)"]
[2,248,0.00171,"isopentenyl-diphosphate delta-isomerase activity (2)",0.00171,"psotive regulation of alpha-beta T cell proliferation (2)"]
[5,1027,0,"MHC class II receptor activity (13)",0,"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (11)"]
[6,31,{"v":1e-05,"d":"1.00E-05"},"chemokine activity (5)",{"v":0,"d":"0.00E+00"},"immune response (8)"]
[8,28,{"v":0,"d":"0.00E+00"},"MHC class II receptor activity (10)",{"v":0,"d":"0.00E+00"},"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (11)"]
[12,380,{"v":2e-05,"d":"2.00E-05"},"structural constituent of ribosome (12)",{"v":5e-05,"d":"5.00E-05"},"glycolysis (6)"]
[14,271,0,"structural constituent of ribosome (12)",{"v":1e-05,"d":"1.00E-05"},"translation (12)"]
[17,23,{"v":0,"d":"0.00E+00"},"MHC class I rececptor activity (6)",{"v":0,"d":"0.00E+00"},"antigen processing and presentation of peptide antigen via MHC class I (6)"]
[33,480,{"v":0.00076,"d":"7.60E-04"},"3-chloroallyl aldehyde dehydrogenase activity (3)",{"v":0.00147,"d":"1.47E-03"},"intracellular signaling cascade (1)"]
[41,584,{"v":0.00049,"d":"4.90E-04"},"structural constituent of ribosome (13)",{"v":0.00174,"d":"1.74E-03"},"translation (14)"]
[39,807,{"v":1e-05,"d":"1.00E-05"},"MHC class II receptor activity (10)",{"v":0,"d":"0.00E+00"},"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (11)"]
[]
[]
[]
["SAMBA"]
["Q","genes","p-value","molecular function","p-value","biological process"]
[20,78,0,"extracellular matrix structural constituent (10)",0,"phosphate transport (9)"]
[24,76,0.00392,"aminoacyl-tRNA ligase activity (1)",0.00392,"tRNA aminoacylation for protein translation (1)"]
[27,87,0,"chemokine activity (5)",0,"immune response (26)"]
[3,124,0,"chemokine activity (9)",0,"immune response (33)"]
[30,137,{"v":0.00083,"d":"8.30E-04"},"wide-spectrum protease inhibitor activity (2)",0.00127,"homophilic cell adhesion (6)"]
[31,146,0.00164,"serine-type endopeptidase activity (5)",{"v":0.00019,"d":"1.90E-04"},"homophilic cell adhesion (6)"]
[34,77,0,"chemokine activity (6)",0,"immune response (18)"]
[36,34,0.00687,"double-stranded DNA specific 5'-3' exodeoxyribonuclease activity (2)",0,"cell division (10)"]
[77,88,0,"extracellular matrix structural constituent (12)",0,"phosphate transport (10)"]
[78,34,{"v":0.00019,"d":"1.90E-04"},"structural molecule activity (5)",0,"epidermis development (5)"]
[82,35,0.00107,"steroid binding (2)",{"v":0.00051,"d":"5.10E-04"},"very-long-chain fatty acid metabolic process (2)"]
[84,39,0.00107,"unspecific monooxygenase activity (4)",0.00268,"electron transport (6)"]
[87,135,{"v":0.00061,"d":"6.10E-04"},"unspecific monooxygenase activity (5)",{"v":0.00072,"d":"7.20E-04"},"pigmentation (2)"]
[93,51,0,"unspecific monooxygenase activity (6)",0.00104,"electron transport (7)"]
[94,45,0,"unspecific monooxygenase activity (6)",{"v":0.00042,"d":"4.20E-04"},"electron transport (7)"]

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