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["Supplementary table 1 - Information from the UCSC genome browser regarding possible alternative splicing in the false positives with P(ACE) ≥ 0.7 in the dataset D1 (HS : Human, MM : Mouse, ACEScan +ve - present on the ACEScan prediction track)."]
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["Sample #","Label","P(ACE)","Gene","Refseq","Genomic Location","Skipped in HS?","Skipped in MM?","Other AS in HS?","Other AS in MM?","“Proven” ACE?","“Proven Non-Constitutive”?","ACEScan +ve?","Comments"]
[1561,"Constitutive ",0.996,"RAPGEF4","NM_007023","chr2:173,633,734-173,533,787","Yes","Yes","No","No","Yes","Yes","No"]
[1567,"Constitutive ",0.97,"RAPGEF4","NM_007023","chr2:173,563,784-173,563,899","No","No","No","No","No","No","Yes","Low coverage.Excellent conservation everywhere, esp. upstream – over 200 bp!"]
[1051,"Constitutive ",0.968,"RPS6KB1","NM_003161","chr17:55,363,696-55,363,936","No","No","No","Yes ","No","Yes","Yes"]
[1576,"Constitutive ",0.93,"RAPGEF4","NM_007023","chr2:173,609,602-173,609,666","No","No","Yes (AD, alternative termination?)","No","No","Open","Yes","Evidence of ES in Orangutan"]
[1748,"Constitutive ",0.92,"GPR64","NM_005756","ChrX:18,951,910-18,952,020","Yes","No","No","No","No","Yes","Yes","Low coverage"]
[1292,"Constitutive ",0.85,"TRHDE","NM_013381","chr12:71,248,615-71,248,703","No","No","Possible AA","No","No","No","No","Low coverage "]
[1255,"Constitutive ",0.81,"NR2E1","NM_003269","chr6:108,608,159-108,608,353","No","No","No","No","No","No","Yes","Low coverage"]
[926,"Constitutive ",0.8,"TMEFF1","NM_003692","chr9:102,315,362-102,315,467","No","No","No","No","No","No","No"]
[339,"Constitutive ",0.77,"SLC30A7","NM_133496","chr1:101,134,629-101,134,877","No","No","No","No","No","No","No"]
[1806,"Constitutive ",0.753,"SEMA6C","NM_030913","chr1:149,378,638-149,378,901","No","Yes","No","No","No","Yes","No"]
[1396,"Constitutive ",0.735,"AMELX","NM_001142","chrX:11,224,820-11,224,867","Yes","Yes","No","No","Yes","Yes","Yes","CCDS support in HS, MGC in MM"]
[1157,"Constitutive ",0.73,"STYX","NM_145251","chr14:52,281,320-52,281,352","Possibly (1 EST)","No","No","No","No","No","No"]
[624,"Constitutive ",0.705,"PLSCR4","NM_020353","chr3:147,401,425-147,401,647","Yes","No","No","No","No","Yes","No"]
[1973,"Constitutive ",0.69,"UBXD8","NM_014613","chr5:175,851,801-175,851,939","No","Yes","No","Possible AA","No","Yes","No"]
[]
[]
["AA: Alternative Acceptors; AD: Alternative Donors; IR: Inton Retention; ME: Mutually Exclusive. The tracks inspected included \"RefSeq\", \"Known Genes\", Known Alt\", \"CCDS\", \"MGC\", \"AceView\", \"ACEScan\", and \"SIB alternative splicing\"."]

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["Supplementary table 2 - Information from the UCSC genome browser regarding possible alternative splicing in the false positives with P(ACE) ≥ 0.7 in the dataset D2 (HS : Human, MM : Mouse, ACEScan +ve - present on the ACEScan prediction track)."]
[]
["Sample #","Label","P(ACE)","Gene","Refseq","Genomic Location","Skipped in HS?","Skipped in MM?","Other AS in HS?","Other AS in MM?","“Proven” ACE?","“Proven Non-Constitutive”?","ACEScan +ve?","Comments"]
[1235,"Constitutive ",0.996,"SNX2","NM_003100","chr5:122,180,427-122,180,740","No","Possibly (ACEview)","No","No","No","Yes","Yes"]
[919,"Constitutive ",0.996,"ACSL6","NM_001009185","chr5:131,338,485-131,338,562","Yes","Yes","No","No","Yes","Yes","No","Is in fact a case of conserved ME; Refseq support for ES"]
[3136,"Constitutive ",0.982,"RNF111","NM_017610","chr15:57,163,593-57,163,745","No","No","Yes (AA)","Yes (AltPromoter, Bleeding)","No","Yes","No","AA at 27 bp, strong conservation in upstream flank, but not in downstream"]
[5049,"Constitutive ",0.9520000000000001,"CUTL1","NM_181552","chr7:101,628,802-101,628,867","Yes","Yes","No","No","Yes","Yes","Yes","CCDS and Refseq support for ES"]
[4623,"Constitutive ",0.9450000000000001,"ZMYM3","NM_201599","chrX:70,385,594-70,385,744","Possibly (SIB track only)","Possibly (ACEview)","No","Yes (IR)","No","Yes","No"]
[421,"Constitutive ",0.937,"PUM2","NM_015317","chr2:20,374,639-20,375,005","Yes","Possibly (ACEview)","No","No","No","Yes","No"]
[581,"Constitutive ",0.915,"VAV3","NM_001079874","chr1:107,946,542-107,946,629","No","No","No","No","No","No","No"]
[855,"Constitutive ",0.914,"COL5A1","NM_000093","chr9:136,861,643-136,861,711","Yes","Yes","Yes (IR)","No","Yes","Yes","Yes (sort of)","The ACEScan +ve is actually the composite of this exon, the downstream intron and the next exon"]
[1862,"Constitutive ",0.889,"TLN1","NM_006289","chr9:35,712,790-35,712,984","Possibly (ACEview)","No","No","No","No","No","No"]
[1129,"Constitutive ",0.631,"OGT","NM_181673","chrX:70,684,482-70,684,598","Possibly (1 EST)","Possibly (1 EST)","Yes (Bleeding)Yes (Bleeding)","Yes (Bleeding)Yes (Bleeding)","No","Yes","No","Both ACEview and SIB support ES in HS"]
[3914,"Constitutive ",0.75,"ZMYM3","NM_201599","chrX:70,386,036-70,386,254","Possibly (SIB track only)","No","Yes (AD)","Yes (AD,IR)","No","Yes","Yes"]
[3406,"Constitutive ",0.737,"PDK3","NM_005391","chrX:24,454,236-24,454,312","Possibly (antisense?)","No","No","Yes (AD)","No","Yes","No","EST for skipping in HS is “antisense to gene” - does that make sense, or must it be another gene?"]
[3717,"Constitutive ",0.728,"MCF2","NM_001099855","chrX:138,541,190-138,541,318","Yes","No","No","No","No","Yes","Yes","Low coverage in mouse"]
[]
[]
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["AA: Alternative Acceptors; AD: Alternative Donors; IR: Inton Retention; ME: Mutually Exclusive. The tracks inspected included \"RefSeq\", \"Known Genes\", Known Alt\", \"CCDS\", \"MGC\", \"AceView\", \"ACEScan\", and \"SIB alternative splicing\"."]