Tables of significant GO terms of biological process for the output clusters with cutoff = 0.9 "Note that these significant GO terms were obtained by GO term Finder, which is available at http://http://db.yeastgenome.org/cgi-bin/GO/goTermFinder.pl" Cluster 1 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0006310 DNA recombination 0.000159997 1.50E-06 5 12 121 6476 0.00% 0 "YDR113C, YAR007C, YPL127C, YDR097C, YOL090W" GO:0000710 meiotic mismatch repair 0.007037092 6.58E-05 2 12 7 6476 3.00% 0.06 "YDR097C, YOL090W" GO:0007131 meiotic recombination 0.01223546 0.00011435 3 12 54 6476 2.00% 0.06 "YAR007C, YDR097C, YOL090W" GO:0007127 meiosis I 0.031314316 0.000292657 3 12 74 6476 4.50% 0.18 "YAR007C, YDR097C, YOL090W" GO:0006281 DNA repair 0.034240907 0.000320008 4 12 194 6476 3.60% 0.18 "YDR113C, YAR007C, YDR097C, YOL090W" Cluster 2 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0000084 S phase of mitotic cell cycle 0.007295504 0.00015199 2 7 18 6476 4.00% 0.04 "YLR103C, YPR120C" GO:0051325 interphase 0.00804394 0.000167582 3 7 112 6476 2.00% 0.04 "YLR103C, YKL101W, YPR120C" GO:0051329 interphase of mitotic cell cycle 0.00804394 0.000167582 3 7 112 6476 1.33% 0.04 "YLR103C, YKL101W, YPR120C" GO:0051320 S phase 0.009050441 0.000188551 2 7 20 6476 1.00% 0.04 "YLR103C, YPR120C" GO:0022403 cell cycle phase 0.011699619 0.000243742 4 7 345 6476 0.80% 0.04 "YLR103C, YKL101W, YER095W, YPR120C" GO:0022402 cell cycle process 0.027659357 0.000576237 4 7 431 6476 0.67% 0.04 "YLR103C, YKL101W, YER095W, YPR120C" GO:0000086 G2/M transition of mitotic cell cycle 0.028123787 0.000585912 2 7 35 6476 0.57% 0.04 "YKL101W, YPR120C" GO:0007049 cell cycle 0.032645338 0.000680111 4 7 450 6476 0.50% 0.04 "YLR103C, YKL101W, YER095W, YPR120C" Cluster 3 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0007067 mitosis 0.033038197 0.003670911 2 6 127 6476 38.00% 0.38 "YML034W, YGL021W" GO:0000087 M phase of mitotic cell cycle 0.034069893 0.003785544 2 6 129 6476 20.00% 0.4 "YML034W, YGL021W" Cluster 4 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0006333 chromatin assembly or disassembly 7.75E-06 5.17E-07 4 5 118 6476 0.00% 0 "YNL030W, YNL031C, YDR225W, YBR010W" GO:0006323 DNA packaging 0.000165499 1.10E-05 4 5 253 6476 0.00% 0 "YNL030W, YNL031C, YDR225W, YBR010W" GO:0006325 establishment and/or maintenance of chromatin architecture 0.000165499 1.10E-05 4 5 253 6476 0.00% 0 "YNL030W, YNL031C, YDR225W, YBR010W" GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.004061035 0.000270736 4 5 567 6476 1.00% 0.04 "YNL030W, YNL031C, YDR225W, YBR010W" GO:0051276 chromosome organization and biogenesis 0.004203784 0.000280252 4 5 572 6476 0.80% 0.04 "YNL030W, YNL031C, YDR225W, YBR010W" GO:0006259 DNA metabolic process 0.00976207 0.000650805 4 5 709 6476 2.67% 0.16 "YNL030W, YNL031C, YDR225W, YBR010W" GO:0006139 "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" 0.016978724 0.001131915 5 5 1669 6476 3.71% 0.26 "YNL030W, YNL031C, YDR225W, YDL055C, YBR010W" Cluster 5 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0007109 completion of separation involved in cytokinesis 1.35E-10 2.25E-11 4 5 11 6476 0.00% 0 "YLR286C, YGL028C, YHR143W, YER124C" GO:0000920 cell separation during cytokinesis 2.93E-10 4.88E-11 4 5 13 6476 0.00% 0 "YLR286C, YGL028C, YHR143W, YER124C" GO:0032506 cytokinetic process 9.46E-07 1.58E-07 4 5 88 6476 0.00% 0 "YLR286C, YGL028C, YHR143W, YER124C" GO:0000910 cytokinesis 2.25E-06 3.75E-07 4 5 109 6476 0.00% 0 "YLR286C, YGL028C, YHR143W, YER124C" GO:0051301 cell division 5.82E-05 9.70E-06 4 5 245 6476 0.00% 0 "YLR286C, YGL028C, YHR143W, YER124C" Cluster 6 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0008150 biological_process 0.035887766 0.035887766 3 4 1430 6476 100.00% 1 "YMR032W, YML119W, YKL069W, YNL058C" Cluster 9 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0006468 protein amino acid phosphorylation 0.033981466 0.001415894 2 4 101 6476 26.00% 0.26 "YMR001C, YGL021W" Cluster 10 GOID TERM CORRECTED_PVALUE UNCORRECTED_PVALUE NUM_LIST_ANNOTATIONS LIST_SIZE TOTAL_NUM_ANNOTATIONS POPULATION_SIZE FDR_RATE EXPECTED_FALSE_POSITIVES ANNOTATED_GENES GO:0006333 chromatin assembly or disassembly 4.82E-06 1.05E-07 4 4 118 6476 0.00% 0 "YDR224C, YBL003C, YDR225W, YBR010W" GO:0006323 DNA packaging 0.000104729 2.28E-06 4 4 253 6476 0.00% 0 "YDR224C, YBL003C, YDR225W, YBR010W" GO:0006325 establishment and/or maintenance of chromatin architecture 0.000104729 2.28E-06 4 4 253 6476 0.00% 0 "YDR224C, YBL003C, YDR225W, YBR010W" GO:0045816 negative regulation of global transcription from RNA polymerase II promoter 0.00013156 2.86E-06 2 4 5 6476 0.00% 0 "YDR224C, YDR225W" GO:0006358 regulation of global transcription from RNA polymerase II promoter 0.000197299 4.29E-06 2 4 6 6476 0.00% 0 "YDR224C, YDR225W" GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.002677071 5.82E-05 4 4 567 6476 0.67% 0.04 "YDR224C, YBL003C, YDR225W, YBR010W" GO:0051276 chromosome organization and biogenesis 0.002773015 6.03E-05 4 4 572 6476 0.57% 0.04 "YDR224C, YBL003C, YDR225W, YBR010W" GO:0006281 DNA repair 0.004764746 0.000103581 3 4 194 6476 0.50% 0.04 "YDR224C, YBL003C, YDR225W" GO:0006259 DNA metabolic process 0.006558983 0.000142587 4 4 709 6476 1.11% 0.1 "YDR224C, YBL003C, YDR225W, YBR010W" GO:0006974 response to DNA damage stimulus 0.008450923 0.000183716 3 4 235 6476 1.20% 0.12 "YDR224C, YBL003C, YDR225W" GO:0009719 response to endogenous stimulus 0.009453886 0.000205519 3 4 244 6476 1.09% 0.12 "YDR224C, YBL003C, YDR225W" GO:0000122 negative regulation of transcription from RNA polymerase II promoter 0.025387695 0.000551906 2 4 63 6476 1.50% 0.18 "YDR224C, YDR225W"