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[]
["Gene","CNEs","size (in bp)","Genomic Locus (UCSC brower, Zv6 assembly)","Primer sequences for PCR (forward)","Primer sequences for PCR (reverse)","Genomic Locus (UCSC bowser Zv8 asembly)"]
[]
["nkx3.2"]
[null,"Bx1",318,"chr14:1,308,453-1,308,770","5`ATGTTCAGTGTTTCCCGCGT3`","5`TCTGCTCCGATTCAATGAAG3`"]
[null,"Bx2",860,"chr14:1,289,165-1,290,024","5`ATCAATCATTTATGTAAGGA3`","5`GTGTGTGTGTGTGTGCACTACCTGCATCAGC3`"]
[null,"Bx3",158,"chr14:1,297,231-1,297,388","5`TGTGTGTGTGTGTGTGTGTC3`","5`AACTAAAATGGGTATTATGG3`"]
[null,"Bx4",990,"chr14:1,289,080-1,290,069","5`GAAGGACTTTATTTAGGGTG3`","5`CAGAAACACAACTGGGAGAA3`","chr14:280,701-281,056"]
[]
["pax9"]
[null,"Px1",312,"chr17:47,948,887- 47,949,198","5`CCATCATCCTTGTCACCTGG3`","5`CTGGTCATAAACCAGCAGAG3`"]
[null,"Px2",300,"chr17:47,958,914-47,959,213 ","5`CGAAAGAGTCTATTAGGTTT3`","5`GAATAAAACAAAGAGCAAAC3`","chr17:36,036,211-36,036,510"]
[null,"Px3",518,"chr17:47,960,285-47,960,802","5`AGAAATTAAGGCGAGCAAAA3`","5`CCGACAAGATGAATCGGGAT3`"]
[null,"Px4",587,"chr17:47,962,414-47,963,000 ","5`TCAAACCATTGAGTTCTGTT3`","5`TGTATGTGATTTGTATTGTG3`","chr17:36,039,711-36,040,297"]
[null,"Px5",618,"chr17:47,963,830-47,964,447","5`AAATTCAAAAAATTCCACAT3`","5`CCCTCCTAAAATTAATAAGA3`"]
[null,"Px6",404,"chr17:47,968,026-47,968,429","5`TGCCCCCGTTTTCAAGCTTT3`","5`CTGCAGCCTCGCTAAGTTTT3`"]
[null,"Px7",942,"chr17:47,910,698-47,911,639","5`GAGAGGAGCTGCTAAGATAA3`","5`AATAGCAGACCTGGAATTGA3`","chr17:35,987,995-35,988,936"]
[null,"Px8",311,"chr17:47,797,426-47,797,736 ","5`TAGTTGATTTTTCATGTGCA3`","5`TGTAGAGAGAGATTCCCAAA3`"]
[null,"Px9",554,"chr17:47,767,357-47,767,910","5`ACCTCCAGCATTTCAGCTCA3`","5`CATAGATGTCCTTAAACACA3`"]
[null,"Px10",1244,"chr17:47,756,199-47,757,442 ","5`ATGCTGTTATAATAACCCAT3`","5`ATTTAACCCTTGCGATTACT3`"]
[null,"Px11",551,"chr17:47,753,064-47,753,614 ","5`TCCGTCACACCTGTCTTACC3`","5`CAGTGACATTCATGCCCAGC3`"]
[]
["otx1"]
[null,"Ox1",240,"chr17:20,346,160-20,346,519 ","5`TGCATTTTGCTGGTTTACTC3`","5`TCACCAAAGCCCTTCGACCG3`"]
[null,"Ox2",627,"chr17:20,352,401-20,353,027","5`TGGAGGGTAGACTGTGACCA3`","5`CAGAAGAAGCTCAGCTCTGT3`","chr17:21,964,220-21,964,846"]
[null,"Ox3",529,"chr17:20,353,609-20,354,138 ","5`TCAAATGCAGCAAGCGAGGG3`","5`TATGCCATGACTCCTATTTC3`","chr17:21,963,109-21,963,638"]
[null,"Ox4",1045,"chr17:20,368,650-20,369,694","5`AAAGCAAATAACTCTGAAGT3`","5`TAAAAAGCAAACTCCATTTC3`","chr17:21,947,553-21,948,597"]
[null,"Ox5",1397,"chr17:20,374,611-20,376,005 ","5`AGTTTTAATATATTATAAAA3`","5`AGCGGGAGTGTGATGGAGAC3`"]
[null,"Ox6",440,"chr17:20,376,073-20,376,512 "," 5`AAACACATTTCCGCTGAAGA3`","5`CGTGACAAAAAGAAACTAAT3`"]
[null,"Ox7",728,"chr17:20,382,862-20,383,589 ","5`ACGCTCAAAATTGATATGTT3`","5`ATGTATATACAGTATAGGCT3`"]
[null,"Ox8",464,"chr17:20,389,349-20,389,812","5`TAAAGACTGCTGCAAAAAAA3`","5`ACCACTCTGGCTCTCAGGCC3`"]
[null,"Ox9",603,"chr17:20,397,827-20,398,429","5`CCTCGCTAGAATCCCCCTTT3`","5`GATGTGAAAAAACTTTAAAC3`"]
[null,"Ox10",312,"chr17:20,420,693-20,421,004","5`AGGCCCAGACAGAAGCACTC3`","5`ATACCCTGTTCTACTTCTTC3`"]
[null,"Ox11",995,"chr17:20,422,590-20,423,584 ","5`GTGATGTTTGACGCATATTT3`","5`CTTGACATAGTTATTTTAAT3`"]
[null,"Ox12",826,"chr17:20,429,817- 20,430,642 ","5`TCTAGTGCTTGCTGGGACAA3`","5`TATATTTATTTTATTAATCT3`"]
[null,"Ox13",503,"chr17:20,431,325- 20,431,827","5`TATCAACACTATGCCACAAA3`","5`AGCAGGCTGGTCATTGTCCT3`"]
[null,"Ox14",540,"chr17:20,486,395-20,486,934 ","5`TTCACATCCTAAAGACTGCT3`","5`GGCTAATCATTTTTTAACTG3`"]
[null,"Ox15",611,"chr17:20,494,889- 20,495,499 ","5`AGAATCCCCCTTTCCCTGAG3`","5`AATGATTTCTACCAGGATGT3`"]
[null,"Ox16",995,"chr17:20,517,231-20,518,225 ","5`GTGATGTTTGACGCATATTT3`","5`CTTGACATAGTTATTTTAAT3`"]
[]
["foxa2"]
[null,"Fx1",1002,"chr17:55,895,918-55,896,919 ","5`CTGTCAGGAGGAATTAAAGT3`","5`TTTACAAATCATTTTTGTTG3`"]
[null,"Fx2",449,"chr17:55,892,393-55,892,841 ","5`AGATGTCTTATAGGCTCATG3`","5`AGTGAAAGAAGTTTGCCTG3`","chr17:39,655,270-39,655,718"]
[null,"Fx3",425,"chr17:55,889,244-55,889,668 ","5`CATCCAACACTGTTGTCAAA3`","5`AATTTAGCATAATTTCCATG3`"]
[null,"Fx4",779,"chr17:55,885,208-55,885,986 ","5`TTAGCATTAATGTACAATGA3`","5`TCAAAAGAACAGCATTCATT3`"]
[null,"Fx5",1220,"chr17:55,870,353-55,871,572 ","5`TTTAAACCTGTTTTCAAGAC3`","5`GACTGGCCCTATAATACACA3`"]
[null,"Fx6",769,"chr17:55,867,708-55,868,535 ","5`TATTATTATTGTTGTTGTTG3`","5`GTGGGAGAGAGAGTCTTCAT3`","chr17:39,630,585-39,631,412"]
[]
[]
[]
[null,"Non- conserved enhancers"]
[]
[null,"for otx1b"]
[null,"NC2",1010,"chr17:20,312,333-20,313,342",null,null,"chr17:22,003,905-22,004,914"]
[null,"NC2C",210,"chr17:20,312,743-20,312,952",null,null,"chr17:22,004,295-22,004,504"]
[]
[null,"for pax9"]
[null,"branchial arch enahncer",564,"chr17:47,920,936-47,921,499",null,null,"chr17:35,998,233-35,998,796"]

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