******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.0.0 (Release date: 9 PDT 20) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= pasted_sequences ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ HosGRHL2 1.0000 609 HosLBP1a 1.0000 540 CiiGRH 1.0000 359 CiiLSF 1.0000 491 DrmGRHA 1.0000 1063 Drmgemini 1.0000 932 CapGRH 1.0000 355 CapLSF 1.0000 693 LogGRH 1.0000 881 LogLSF 1.0000 552 NevLSF 1.0000 527 NevGRH1 1.0000 197 NvGRH2 1.0000 157 PhbLSFL1 1.0000 504 AmqLSF 1.0000 428 AmqGRH 1.0000 663 MobLSF 1.0000 524 PhbLSFL2 1.0000 818 AsnLSFL1 1.0000 679 AsnLSFL2 1.0000 693 BrfLSF 1.0000 470 BrfGRH 1.0000 601 DapLSF 1.0000 537 DapGRH 1.0000 297 MyfLSFL 1.0000 876 MygLSFL 1.0000 815 TrvLSFL 1.0000 768 TraGRH 1.0000 312 MnlGRH 1.0000 517 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme sequences -sf pasted_sequences -protein -mod tcm -nmotifs 20 -minw 2 -maxw 300 -time 7200 -maxsize 60000 -oc . -nostatus model: mod= tcm nmotifs= 20 evt= inf object function= E-value of product of p-values width: minw= 2 maxw= 300 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= megap b= 84290 maxiter= 50 distance= 1e-05 data: n= 16858 N= 29 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.066 C 0.013 D 0.059 E 0.060 F 0.036 G 0.055 H 0.031 I 0.054 K 0.056 L 0.077 M 0.022 N 0.048 P 0.063 Q 0.056 R 0.047 S 0.097 T 0.063 V 0.056 W 0.008 Y 0.032 Background letter frequencies (from dataset with add-one prior applied): A 0.066 C 0.013 D 0.059 E 0.060 F 0.036 G 0.055 H 0.031 I 0.054 K 0.056 L 0.077 M 0.022 N 0.048 P 0.063 Q 0.056 R 0.047 S 0.096 T 0.063 V 0.056 W 0.008 Y 0.032 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 29 sites = 26 llr = 1536 E-value = 2.5e-379 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1::5:::::::::::a:::::::12:2:: pos.-specific C ::13:a:::::2::::::::::::::::: probability D ::::::::::::7:::3::::56::::1: matrix E :3::::::::::::::7:::::422::4: F ::::2:::::a:::::::::::::::::: G :::2::::::::::a:::::::::::::: H :6:::::::::::2:::::2:::::2::: I 2::::::5:1:::::::::2::::::2:: K ::1:::3:a::3:8::::a:6:::24127 L 2::::::::3::1::::::2:::1::::: M ::::::::::::::::::::::::::2:: N :::::::::::::::::::2:2:::::1: P 1:::::::::::2:::::::::::::::: Q ::::::6::::::::::::1:1::1:::: R ::4:::1::::4:::::a::2::232::3 S 212:2:::::::::::::::2::1:1::: T :::::::::::::::::::1:2:::1::: V 2:2::::5:7:::::::::::::2::2:: W ::::::::::::::::::::::::::::: Y ::::5:::::::::::::::::::::::: bits 6.9 6.2 * 5.5 * 4.8 * * Relative 4.1 * * * ** ** Entropy 3.4 * * * ** ****** * (85.2 bits) 2.8 * **************** * * * 2.1 ********************** ** * 1.4 ***************************** 0.7 ***************************** 0.0 ----------------------------- Multilevel IHRAYCQIKVFRDKGAERKHKDDRRKIEK consensus VE C KV L K D R EVEHV R sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- HosGRHL2 390 2.79e-30 YSYNNRSNKP IHRAYCQIKVFCDKGAERKIRDEERKQNR KKGKGQASQT CapGRH 130 2.07e-29 TFEDTSSATP IHRGYCQVKVFCDKGAERKTRDEERRKDK SKPDGMSLTA NevGRH1 168 6.48e-29 EDVDNPDAEP VHRAFCQIKVFRDKGAERKNKDESKSAER R DrmGRHA 789 7.44e-29 TFEDPRDTAV FHRGYCQIKVFCDKGAERKTRDEERRAAK RKMTATGRKK BrfLSF 214 4.73e-28 VDSYSIEEEH LHSASCQIKVFKPKGADRKIKTDREKMEK KPDKDKYQPS PhbLSFL1 247 6.90e-28 MGTQVVGEQH IEKAYCRIKLFRDKGAERKNKDDAKHIER KNGEPHPLWL LogLSF 249 1.45e-27 FSHEEEEEKL LHSASCQVKVFKPKGADRKHKTDREKMDK RSESEKEKYQ HosLBP1a 225 1.63e-27 QNENGEYTDH LHSASCQIKVFKPKGADRKQKTDREKMEK RTAHEKEKYQ MygLSFL 431 2.07e-27 PSGNASKVQE SEVCYCKVKLFRDHGAERKLSNDVAHVKK TIDKLNQQIA AsnLSFL2 337 2.07e-27 DDTSSTSGKE SEVCYCKVKLFRDHGAERKLSNDVAHVKK TIEKLRQQIA AsnLSFL1 346 2.07e-27 DDTSSTSGKE SEVCYCKVKLFRDHGAERKLSNDVAHVKK TIEKLRQQIA LogGRH 668 2.34e-27 DTFEENHSVP IHRGYCQIKVFCDKGAERKTRDEERRKTA KSKAENYSHR MyfLSFL 496 2.96e-27 AIEESTTPTG PEVCYCKVKLFRDHGAERKLSNDVAHVKK TIDKLNQQIA BrfGRH 389 2.96e-27 YTDYFKGATP VHRAYVQIKVFCDKGAERKIRDEVRKISK KKQSEEIKSQ CapLSF 247 3.33e-27 YIGDIHPARI VHCSSCQVKVFKPKGADRKHKTDRERIEK RSETEKLFFR TraGRH 110 4.21e-27 EDLTSSDVEP VHRAFCKVKIFRDKGAERKNKDESKTARK RIQKMLKAHT AmqGRH 428 6.68e-27 NDRMTEHDEP SHRAYCRVKIFRDKGAERKNKDETKSVER RLQKFIRSYN CiiGRH 162 1.05e-26 YMDNRRGAAP AHRGMCQLKVFCDKGAERKIRDEERKAMR KRQRSGIKAG PhbLSFL2 539 1.18e-26 SDSQYGTYDY VESCFCKIKLFRDKGAERKIKDDAKQINR HLEKLFSEGN TrvLSFL 419 1.65e-26 DQLPSPPDAA PETCYCKVKLFRDHGAERKLSNDVAHVKK SIDKLKQQIA MnlGRH 126 2.85e-26 EDMESLNPEP ADRCYCQIKVFRDKGAESKNKDESRTAEK KLQKLLKNGT DapLSF 262 3.54e-26 HGDGDGTPKR LHVAGCQIKVFKLKGADRKHKQDREKIYK RPMVEQEKYQ CiiLSF 217 6.05e-26 LQNNNEYGRY IHSASCQIKVFKPKGADRKQKTDKDKMER RTAQEKLKYQ Drmgemini 595 8.31e-26 PSAGSNGKQA VHAAACQIKVFKLKGADRKHKQDREKIQK RPQSEQEKFQ AmqLSF 149 6.38e-25 PSIEDTGGTH ISKCFCLVKVFKDKGADRKHKHDLQKREK LQSDEAAKYW NevLSF 263 2.89e-22 SIDASFDELP MSCNFCQVKVFKSKGADRKHKMELQKLES KSHDEIGQLQ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HosGRHL2 2.8e-30 389_[1]_191 CapGRH 2.1e-29 129_[1]_197 NevGRH1 6.5e-29 167_[1]_1 DrmGRHA 7.4e-29 788_[1]_246 BrfLSF 4.7e-28 213_[1]_228 PhbLSFL1 6.9e-28 246_[1]_229 LogLSF 1.4e-27 248_[1]_275 HosLBP1a 1.6e-27 224_[1]_287 MygLSFL 2.1e-27 430_[1]_356 AsnLSFL2 2.1e-27 336_[1]_328 AsnLSFL1 2.1e-27 345_[1]_305 LogGRH 2.3e-27 667_[1]_185 MyfLSFL 3e-27 495_[1]_352 BrfGRH 3e-27 388_[1]_184 CapLSF 3.3e-27 246_[1]_418 TraGRH 4.2e-27 109_[1]_174 AmqGRH 6.7e-27 427_[1]_207 CiiGRH 1.1e-26 161_[1]_169 PhbLSFL2 1.2e-26 538_[1]_251 TrvLSFL 1.6e-26 418_[1]_321 MnlGRH 2.9e-26 125_[1]_363 DapLSF 3.5e-26 261_[1]_247 CiiLSF 6.1e-26 216_[1]_246 Drmgemini 8.3e-26 594_[1]_309 AmqLSF 6.4e-25 148_[1]_251 NevLSF 2.9e-22 262_[1]_236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=29 seqs=26 HosGRHL2 ( 390) IHRAYCQIKVFCDKGAERKIRDEERKQNR 1 CapGRH ( 130) IHRGYCQVKVFCDKGAERKTRDEERRKDK 1 NevGRH1 ( 168) VHRAFCQIKVFRDKGAERKNKDESKSAER 1 DrmGRHA ( 789) FHRGYCQIKVFCDKGAERKTRDEERRAAK 1 BrfLSF ( 214) LHSASCQIKVFKPKGADRKIKTDREKMEK 1 PhbLSFL1 ( 247) IEKAYCRIKLFRDKGAERKNKDDAKHIER 1 LogLSF ( 249) LHSASCQVKVFKPKGADRKHKTDREKMDK 1 HosLBP1a ( 225) LHSASCQIKVFKPKGADRKQKTDREKMEK 1 MygLSFL ( 431) SEVCYCKVKLFRDHGAERKLSNDVAHVKK 1 AsnLSFL2 ( 337) SEVCYCKVKLFRDHGAERKLSNDVAHVKK 1 AsnLSFL1 ( 346) SEVCYCKVKLFRDHGAERKLSNDVAHVKK 1 LogGRH ( 668) IHRGYCQIKVFCDKGAERKTRDEERRKTA 1 MyfLSFL ( 496) PEVCYCKVKLFRDHGAERKLSNDVAHVKK 1 BrfGRH ( 389) VHRAYVQIKVFCDKGAERKIRDEVRKISK 1 CapLSF ( 247) VHCSSCQVKVFKPKGADRKHKTDRERIEK 1 TraGRH ( 110) VHRAFCKVKIFRDKGAERKNKDESKTARK 1 AmqGRH ( 428) SHRAYCRVKIFRDKGAERKNKDETKSVER 1 CiiGRH ( 162) AHRGMCQLKVFCDKGAERKIRDEERKAMR 1 PhbLSFL2 ( 539) VESCFCKIKLFRDKGAERKIKDDAKQINR 1 TrvLSFL ( 419) PETCYCKVKLFRDHGAERKLSNDVAHVKK 1 MnlGRH ( 126) ADRCYCQIKVFRDKGAESKNKDESRTAEK 1 DapLSF ( 262) LHVAGCQIKVFKLKGADRKHKQDREKIYK 1 CiiLSF ( 217) IHSASCQIKVFKPKGADRKQKTDKDKMER 1 Drmgemini ( 595) VHAAACQIKVFKLKGADRKHKQDREKIQK 1 AmqLSF ( 149) ISKCFCLVKVFKDKGADRKHKHDLQKREK 1 NevLSF ( 263) MSCNFCQVKVFKSKGADRKHKMELQKLES 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 16046 bayes= 9.0223 E= 2.5e-379 24 -172 -490 -401 17 -361 -350 198 -367 99 91 -370 7 -385 -345 49 -234 195 -223 -255 -357 -513 -21 217 -587 -339 416 -589 -318 -554 -503 -202 -490 -306 -407 -35 -390 -509 -547 -476 -52 239 -358 -265 -365 -339 -303 -308 61 -313 -259 -292 -437 -262 286 86 -59 162 -336 -353 277 450 -607 -614 -586 146 -607 -596 -632 -589 -511 -34 -525 -588 -573 -105 -360 -422 -544 -626 -86 -161 -316 -272 227 -115 -47 -233 -271 -202 18 -280 -355 -322 -252 16 -277 -210 -30 395 -366 622 -546 -492 -461 -513 -508 -415 -534 -459 -383 -502 -580 -555 -471 -512 -408 -339 -480 -534 -409 -461 -531 -358 -590 -461 -325 -494 229 -102 -389 -363 -552 331 96 -460 -405 -452 -418 -459 -436 -347 -744 -700 -438 -684 -787 317 -691 -76 -315 -679 -735 -756 -724 -702 -455 300 -613 -589 -450 -410 -581 -529 -602 -517 -501 -501 410 -551 -482 -463 -574 -525 -147 -579 -497 -546 -437 -557 -446 -357 -763 -713 -396 -693 -765 77 -705 176 -283 -695 -735 -738 -719 -715 -467 348 -556 -572 -594 -454 -679 -690 476 -609 -600 -518 -683 -427 -473 -664 -663 -717 -656 -648 -664 -532 -366 -309 -412 401 -537 -366 -594 -464 -333 -500 262 -447 -397 -369 -557 -267 309 -465 -410 -458 -424 -464 -326 -390 349 -276 -552 -318 -374 -588 -386 -15 -531 -193 145 -415 -445 -117 -384 -506 -517 -488 -551 -560 -615 -513 -632 -556 258 -643 382 -587 -548 -495 -657 -425 -266 -598 -552 -603 -517 -544 -457 -514 -537 -592 -653 416 -595 -694 -573 -690 -624 -504 -646 -657 -551 -558 -615 -632 -525 -629 390 -455 -735 -764 -703 -506 -712 -744 -759 -715 -683 -690 -678 -747 -696 -538 -570 -604 -617 -722 -340 -682 246 340 -683 -450 -457 -564 -311 -535 -476 -387 -492 -273 -434 -461 -437 -473 -623 -591 -359 -253 -479 -466 -470 -402 -261 -423 -150 -403 -385 -355 -423 -306 426 -257 -411 -474 -255 -428 -450 -410 -581 -529 -602 -517 -501 -501 410 -551 -482 -463 -574 -525 -147 -579 -497 -546 -437 -557 -221 -202 -377 -314 -231 -344 265 171 -266 123 -142 178 -431 30 -279 -326 77 -136 -246 -271 -408 -460 -525 -360 -591 -459 -328 -496 330 -443 -392 -361 -552 -262 228 87 -405 -454 -420 -460 -354 -435 287 -269 -522 -284 30 -566 -294 -534 66 199 -478 39 -354 -307 150 -510 -487 -435 -349 -670 317 283 -684 -451 -460 -574 -320 -544 -486 -382 -500 -284 -442 -464 -443 -483 -622 -593 25 -289 -218 153 -319 -271 -211 -298 -1 -13 -215 -182 -344 -171 204 17 -49 173 -285 -279 138 -443 -37 196 -486 -375 -314 -446 171 -410 -346 -290 -438 45 235 -352 -325 -383 -416 -414 -387 -450 -485 -336 -564 -444 275 -482 287 -432 -378 -345 -533 -36 176 -40 21 -439 -411 -445 138 -174 -475 -386 -204 -359 -344 198 29 -41 262 -362 -439 -66 -38 -342 -234 194 -224 -256 -41 -300 31 242 -329 -260 -199 -327 164 -295 61 61 -332 -23 -4 -93 -48 -270 -287 9 -88 -436 -524 -364 -582 -455 -333 -483 352 -444 -390 -362 -544 -271 238 -143 -403 -452 -412 -461 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 26 E= 2.5e-379 0.076923 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.230769 0.000000 0.153846 0.038462 0.000000 0.076923 0.000000 0.000000 0.153846 0.000000 0.230769 0.000000 0.000000 0.000000 0.000000 0.038462 0.269231 0.000000 0.000000 0.615385 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.038462 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.384615 0.192308 0.038462 0.192308 0.000000 0.000000 0.461538 0.307692 0.000000 0.000000 0.000000 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.192308 0.038462 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.500000 0.000000 0.961538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.038462 0.000000 0.000000 0.000000 0.615385 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.461538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.269231 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.653846 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.346154 0.000000 0.000000 0.000000 0.000000 0.000000 0.423077 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.192308 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.807692 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.346154 0.653846 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.961538 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.230769 0.192308 0.000000 0.192308 0.000000 0.192308 0.000000 0.076923 0.000000 0.000000 0.115385 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.576923 0.000000 0.000000 0.000000 0.000000 0.000000 0.230769 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.461538 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.038462 0.192308 0.000000 0.076923 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.576923 0.423077 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.038462 0.076923 0.000000 0.000000 0.000000 0.000000 0.230769 0.115385 0.038462 0.230769 0.000000 0.000000 0.192308 0.000000 0.038462 0.230769 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.076923 0.269231 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.423077 0.000000 0.000000 0.000000 0.000000 0.038462 0.153846 0.076923 0.076923 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.230769 0.076923 0.038462 0.153846 0.000000 0.000000 0.038462 0.038462 0.000000 0.000000 0.230769 0.000000 0.000000 0.038462 0.000000 0.076923 0.384615 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.038462 0.076923 0.000000 0.038462 0.038462 0.038462 0.038462 0.000000 0.000000 0.038462 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.653846 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.038462 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [IV][HE]R[AC]YC[QK][IV]K[VL]F[RKC]DKGA[ED]RKH[KR]D[DE][RV][RE][KH][IV]E[KR] -------------------------------------------------------------------------------- Time 360.93 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 24 sites = 26 llr = 1105 E-value = 3.5e-223 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 11:21:5::1:2:::::::::2:: pos.-specific C ::::::2:::::::8::::::::: probability D :4::1:::::::::::::6::::: matrix E :::214::::::::::::4::::: F :::::::::2::2:2::::a:::: G ::2::2:2:::::::::::::::: H :::1:::::::::2:::::::2:: I ::::::::6:5:3::3::::::1: K ::::3::3:::1::::::::::2a L ::1:1:::1:1::::7:::::::: M :::::::::::::::::::::::: N 22:2:1:::2:::8:::::::1:: P :23::::1:1:::::::::::2:: Q :::::1:::::1:1::::::::4: R :::::::::::5:::::::::11: S 1:1122:2:1::::::a1::722: T :1:1::1::::::::::9::3::: V ::11::21313:4::::::::::: W 6::::::::::::::::::::::: Y :::::::::2:::::::::::::: bits 6.9 6.2 5.5 4.8 * * Relative 4.1 * * * * Entropy 3.4 * ** **** * (61.3 bits) 2.8 * * * ******** * 2.1 ** * * *********** * 1.4 *** ******************** 0.7 ************************ 0.0 ------------------------ Multilevel WDPxKEAKIYIRVNCLSTDFSxQK consensus PG V V I I E T sequence F -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ CapLSF 198 1.32e-24 PNSLNSIDFS WDPSKSAGIYIRVNCISTEFTAKK HGGEKGVPFR HosGRHL2 343 1.08e-23 EIAYNAVSFT WDVNEEAKIFITVNCLSTDFSSQK GVKGLPLMIQ DapLSF 211 5.40e-23 NSNLNVVEFA WDPTKEVGVYIKVNCISTEFTPKK HGGEKGVPFR NevGRH1 120 7.35e-23 DQAYNAAGFT WSPHLNAKIVIRINCLSTDFSPQK GVKGIPLHLQ LogLSF 200 1.81e-22 PIKLNEAEFI WDPTKSTGIYIRVHCISTEFTAKK HGGEKGVPFR Drmgemini 507 1.81e-22 SGSLNTVEIF WDPLKEVGVYIKVNCISTEFTPKK HGGEKGVPFR TraGRH 62 4.97e-22 EIAYNAVAFY WNPADNAKIAARINCLSTDFSPQK GVKGIPLHLQ PhbLSFL1 203 6.58e-22 YSSFDRIAFE WNTKKGAVINIRFNCLSTDFSRIK GVKGIPLRLQ CiiGRH 115 2.93e-21 EFAHNAISFN WDVNDVAKIFVSCNCLSTDFSAQK GIKGLPLLLQ CiiLSF 166 8.24e-21 PEQLNLVEFI WDVEKEASVFIQVHCISTEFTVRK HGGEKGVPFR CapGRH 84 1.98e-20 TAHNAVAIRW NPLDKPAKINIAINCLSTDFSNQK GVKGLPLHLQ AmqGRH 376 3.22e-20 DLGYNAASFI WDPRLGARVVLRINCLSTEFSGQK GVKGLPLHVV MnlGRH 78 4.62e-20 EIGCNAVSFT WNSNIGAEIVLRINCLSTEFSSQK GVKGTPLYIQ DrmGRHA 743 1.19e-19 VSHNAIAVYW NPLESSAKINIAVQCLSTDFSSQK GVKGLPLHVQ DapGRH 227 4.14e-19 VAHNAICIYW NPLESSAKINVAVQCLSTDFSSQK GVKGLPLHLQ PhbLSFL2 471 4.14e-19 VSDFDRVSFE WDGSQGATLYVRLNCLSTDFSRIK GVKGIPMRAH HosLBP1a 174 5.17e-19 PSQLNAVEFL WDPAKRTSAFIQVHCISTEFTPRK HGGEKGVPFR MygLSFL 379 5.77e-19 FDGFCVTWTP APGAAECPISVRFNFLSTDFSHSK GVKGIPVRLC MyfLSFL 448 1.24e-18 FDGFCVTWSP AAGASECPISVRFNFLSTDFSHSK GVKGIPVRLC AsnLSFL2 285 1.38e-18 GFCVTWTLNP STGVSECSIPVRFNFLSTDFSHSK GVKGIPVRLC AsnLSFL1 294 1.38e-18 GFCVTWTLNP STGVSECSIPVRFNFLSTDFSHSK GVKGIPVRLC LogGRH 623 4.39e-18 RAFNAVVIKW NPREGQVKVNIAANCLSTDFSNQK GVKGISLHVQ TrvLSFL 367 5.40e-18 DGFSVIWTPG LNGAAEVNIPVRFNFLSTDFSHSK GVKGIPVRLC BrfLSF 168 6.63e-18 PTAVNKVEFQ WDPNKDTSVAIQVHCISTEFTAHR HGGEKGIPFR NevLSF 213 1.13e-14 NLTNAYEFDW NPEEDQIKLYIIINCVSSEFTKGK SGGESGVPLQ AmqLSF 97 2.01e-14 DDFINFASFV WASHEESVVSFKINALSSEFTAKK HGGEKGVPFR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- CapLSF 1.3e-24 197_[2]_472 HosGRHL2 1.1e-23 342_[2]_243 DapLSF 5.4e-23 210_[2]_303 NevGRH1 7.4e-23 119_[2]_54 LogLSF 1.8e-22 199_[2]_329 Drmgemini 1.8e-22 506_[2]_402 TraGRH 5e-22 61_[2]_227 PhbLSFL1 6.6e-22 202_[2]_278 CiiGRH 2.9e-21 114_[2]_221 CiiLSF 8.2e-21 165_[2]_302 CapGRH 2e-20 83_[2]_248 AmqGRH 3.2e-20 375_[2]_264 MnlGRH 4.6e-20 77_[2]_416 DrmGRHA 1.2e-19 742_[2]_297 DapGRH 4.1e-19 226_[2]_47 PhbLSFL2 4.1e-19 470_[2]_324 HosLBP1a 5.2e-19 173_[2]_343 MygLSFL 5.8e-19 378_[2]_413 MyfLSFL 1.2e-18 447_[2]_405 AsnLSFL2 1.4e-18 284_[2]_385 AsnLSFL1 1.4e-18 293_[2]_362 LogGRH 4.4e-18 622_[2]_235 TrvLSFL 5.4e-18 366_[2]_378 BrfLSF 6.6e-18 167_[2]_279 NevLSF 1.1e-14 212_[2]_291 AmqLSF 2e-14 96_[2]_308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=24 seqs=26 CapLSF ( 198) WDPSKSAGIYIRVNCISTEFTAKK 1 HosGRHL2 ( 343) WDVNEEAKIFITVNCLSTDFSSQK 1 DapLSF ( 211) WDPTKEVGVYIKVNCISTEFTPKK 1 NevGRH1 ( 120) WSPHLNAKIVIRINCLSTDFSPQK 1 LogLSF ( 200) WDPTKSTGIYIRVHCISTEFTAKK 1 Drmgemini ( 507) WDPLKEVGVYIKVNCISTEFTPKK 1 TraGRH ( 62) WNPADNAKIAARINCLSTDFSPQK 1 PhbLSFL1 ( 203) WNTKKGAVINIRFNCLSTDFSRIK 1 CiiGRH ( 115) WDVNDVAKIFVSCNCLSTDFSAQK 1 CiiLSF ( 166) WDVEKEASVFIQVHCISTEFTVRK 1 CapGRH ( 84) NPLDKPAKINIAINCLSTDFSNQK 1 AmqGRH ( 376) WDPRLGARVVLRINCLSTEFSGQK 1 MnlGRH ( 78) WNSNIGAEIVLRINCLSTEFSSQK 1 DrmGRHA ( 743) NPLESSAKINIAVQCLSTDFSSQK 1 DapGRH ( 227) NPLESSAKINVAVQCLSTDFSSQK 1 PhbLSFL2 ( 471) WDGSQGATLYVRLNCLSTDFSRIK 1 HosLBP1a ( 174) WDPAKRTSAFIQVHCISTEFTPRK 1 MygLSFL ( 379) APGAAECPISVRFNFLSTDFSHSK 1 MyfLSFL ( 448) AAGASECPISVRFNFLSTDFSHSK 1 AsnLSFL2 ( 285) STGVSECSIPVRFNFLSTDFSHSK 1 AsnLSFL1 ( 294) STGVSECSIPVRFNFLSTDFSHSK 1 LogGRH ( 623) NPREGQVKVNIAANCLSTDFSNQK 1 TrvLSFL ( 367) LNGAAEVNIPVRFNFLSTDFSHSK 1 BrfLSF ( 168) WDPNKDTSVAIQVHCISTEFTAHR 1 NevLSF ( 213) NPEEDQIKLYIIINCVSSEFTKGK 1 AmqLSF ( 97) WASHEESVVSFKINALSSEFTAKK 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 24 n= 16191 bayes= 10.4458 E= 3.5e-223 36 -280 -431 -486 -449 -324 -478 -485 -476 -101 -436 192 -518 -502 -480 -25 -356 -392 609 -436 18 -433 276 -307 -561 -286 -324 -630 -342 -598 -560 172 175 -383 -410 -108 25 -561 -529 -465 -197 -261 -311 -59 -305 167 -292 -253 -217 34 -218 -274 253 -265 -37 -47 -68 78 -303 -320 133 -300 -43 153 -329 -260 110 -326 2 -97 -224 146 -332 -158 -3 -27 24 25 -286 -276 26 -301 80 51 -331 -52 -200 -63 238 -17 -225 -169 -333 -23 -149 80 -199 -271 -288 -278 -182 -318 -39 245 -348 122 -214 -344 -119 -312 -242 63 -82 45 -8 53 -214 -59 -305 -294 305 306 -467 -407 -332 -233 -432 -68 -403 -296 -242 -404 -494 -440 -385 -103 46 109 -319 -390 -171 -303 -205 -13 -333 120 -202 -330 239 -298 -228 -12 5 -161 -3 80 -48 25 -290 -280 -149 -282 -469 -449 -283 -467 -491 357 -407 2 -106 -418 -531 -474 -433 -445 -322 184 -341 -349 14 -194 -376 -317 197 -338 -198 -184 -301 -200 -160 165 52 -340 -301 2 -258 90 -154 291 -160 -273 -453 -432 -84 -449 -470 352 -389 3 -89 -400 -514 -455 -414 -427 -308 187 -320 -331 108 -394 -357 -250 -462 -375 -280 -60 122 -383 -322 -280 -454 97 325 -122 -65 -374 -368 -383 -69 149 -618 -539 254 -503 -507 229 -510 -64 -220 -510 -577 -535 -497 -494 -349 272 -374 -398 -387 -348 -227 -362 -429 -317 165 -419 -326 -475 -413 402 -472 -18 -365 -281 -325 -441 -349 -391 -46 583 -671 -660 235 -371 -562 -512 -664 -508 -482 -553 -564 -617 -596 -376 -405 -422 -420 -368 -479 -388 -769 -692 -296 -688 -665 226 -675 312 -187 -692 -695 -637 -636 -709 -497 -17 -429 -501 -564 -564 -751 -819 -750 -594 -735 -850 -798 -785 -794 -731 -726 -805 -735 336 -643 -747 -641 -748 -287 -255 -461 -479 -442 -426 -449 -352 -398 -445 -303 -293 -497 -421 -393 -17 376 -301 -395 -484 -349 -670 317 283 -684 -451 -460 -574 -320 -544 -486 -382 -500 -284 -442 -464 -443 -483 -622 -593 -594 -454 -679 -690 476 -609 -600 -518 -683 -427 -473 -664 -663 -717 -656 -648 -664 -532 -366 -309 -217 -220 -450 -481 -436 -343 -456 -459 -407 -461 -377 -293 -452 -469 -388 276 217 -416 -399 -440 133 -303 -205 -125 -333 -52 232 -330 1 -298 -227 62 129 -161 67 52 -201 -58 -290 -280 -293 -394 -349 -245 -460 -57 27 35 181 -382 -320 -275 -450 259 89 85 -311 -373 -367 -380 -352 -318 -496 -433 -521 -442 -411 -400 403 -459 -382 -365 -490 -431 -19 -485 -401 -449 -349 -471 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 24 nsites= 26 E= 3.5e-223 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.192308 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.615385 0.000000 0.076923 0.000000 0.423077 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.230769 0.000000 0.000000 0.038462 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.230769 0.000000 0.000000 0.000000 0.115385 0.000000 0.000000 0.346154 0.000000 0.038462 0.076923 0.038462 0.115385 0.000000 0.000000 0.192308 0.000000 0.038462 0.192308 0.000000 0.000000 0.076923 0.000000 0.038462 0.038462 0.000000 0.153846 0.000000 0.000000 0.038462 0.076923 0.076923 0.076923 0.000000 0.000000 0.076923 0.000000 0.115385 0.076923 0.000000 0.038462 0.000000 0.038462 0.346154 0.076923 0.000000 0.000000 0.000000 0.038462 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.384615 0.000000 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.038462 0.076923 0.038462 0.153846 0.000000 0.038462 0.000000 0.000000 0.500000 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.115385 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.153846 0.000000 0.000000 0.346154 0.000000 0.000000 0.038462 0.076923 0.000000 0.038462 0.192308 0.038462 0.076923 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.000000 0.000000 0.076923 0.000000 0.000000 0.000000 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.192308 0.115385 0.000000 0.000000 0.115385 0.000000 0.115385 0.000000 0.230769 0.038462 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.538462 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.115385 0.000000 0.000000 0.000000 0.000000 0.115385 0.500000 0.038462 0.038462 0.000000 0.000000 0.000000 0.038462 0.038462 0.000000 0.000000 0.230769 0.000000 0.000000 0.269231 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.384615 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.000000 0.000000 0.000000 0.000000 0.769231 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.769231 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.000000 0.692308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.000000 0.000000 0.000000 0.576923 0.423077 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.653846 0.346154 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.038462 0.192308 0.000000 0.038462 0.000000 0.000000 0.076923 0.192308 0.000000 0.076923 0.153846 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.038462 0.076923 0.192308 0.000000 0.000000 0.000000 0.000000 0.384615 0.076923 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.961538 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- W[DP][PG]xKEAK[IV]Y[IV]R[VIF]NC[LI]ST[DE]F[ST]xQK -------------------------------------------------------------------------------- Time 660.07 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 41 sites = 23 llr = 1578 E-value = 1.3e-315 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::::::193:314::11:::::::::::2:2:::::::::: pos.-specific C ::::::1:::::::::::::::::::::::::::::::::: probability D ::::::::::::::::123:::::::::::::1::3::4:: matrix E ::1:::4:::::::::183:::::::::::3:::21::1:1 F :7:1::::::::::::::::::::::::3::::1::::::: G 2:::::1:::::::::3:::::::::9:::1::::::4::: H ::3:::::::::::2::::::::::::::::::::::1::1 I :::13::::1:22::1::2:2::1:::::::6::1:1::1: K :::::::::1:::26::::::::::6::::::2:32::::: L :::::9:::::1:::1::::5::8:::::::2:6::2::1: M :::::1:::::2:::1::::1::::::::::::1:::::2: N ::::::1::::::1::2:::::::a:::::::1:::11:1: P 1:::::::7::3:::::::3::::::::1:::::::::123 Q ::3::::::::::4:2:::::::::3:a:::::::::::1: R 4:1:::1:::::1:21:::1::::::::::::1:1::1::: S 1::::::1::7:1::::::1:1::::::3:2:2:::1:113 T ::::3::::7:1:2:::::4:9::::::::1:3:::311:: V :::12:::::::11:1::::2::::::::::2:21:1:::: W ::::::::::::::::::::::::::::::::::::::::: Y :3:6::::::::::::1:::::a:::::1a:::::1::::: bits 6.9 6.2 5.5 4.8 * * Relative 4.1 * * * * Entropy 3.4 * * * * ** * ** * (99.0 bits) 2.8 * * * **** * * ******* * * 2.1 *** ****** ** ************* * * 1.4 *************** ************************* 0.7 ***************************************** 0.0 ----------------------------------------- Multilevel RFQYILEAPTSPAQKxGEETLTYLNKGQFYEITLKDTGDxP consensus GYH T A AM H NDDPV Q S LKV KL S sequence I A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------------- LogLSF 92 1.08e-37 PVFKQENIEN GFQYILGAATSPAVKMNEETLTYLNQGQSYEIKLKKLGDLS NSHGKLLKSL CapLSF 99 1.11e-36 VFKQEAAGEQ SFQYVLAAATSPATKMYEETLTYLNQGQSYEIKLKKLGEMS IVRVVFHERR Drmgemini 397 2.09e-36 ANGATHAEDH KFQYILAAATSIATKNNEETLTYLNQGQSYEIKLKKIGDLS LYRDKILKSV DapLSF 103 3.71e-35 EAPSPPNGEH GFQYVLAAATSIATKVNEESLTYLNQGQPYEIKMKKLGDLS NFRGKLLRSV CiiLSF 57 2.83e-32 ESLLGNQGLP PLQYMLCAPTSPATKVYEETLTYLNQGLPYEIKLKKLRDIP DLGTLKHVKS NevGRH1 9 3.61e-32 MGFFGLFN RYTFILEAPTSIVQRRGDDTLTYLNKGQFYAIDFEGNFDPP STEEDIIRVK BrfLSF 59 5.17e-32 PIFKQEGLEN SFQYILCAATSPASKINEETVTYLNQRQSYELRLKRLGDNS SFQGGELLKS MyfLSFL 322 2.68e-31 PPLHPSAEKF RYHVTLNAPTAMIKHADEIPVTYLNKGQAYTLNVVDTHAQP TAPATKYRTF AmqGRH 269 3.00e-31 EPLAVFRAQE RYLIILGAPTSIAQRQGEDTLTYLNKGQFYSIYFRANNEMV LPSQAKSVIH HosGRHL2 231 3.37e-31 EYMYDQTSSG TFQYTLEATKSLRQKQGEGPMTYLNKGQFYAITLSETGDNK CFRHPISKVR HosLBP1a 63 5.31e-31 LPLDGETEHP PFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMG DMPEINGKLV PhbLSFL1 90 1.45e-30 RSPVNCSTNL RFYIGLEAPTAAAQKLEESPLTYLNKGQYYSVTLKDTETSH ADQIVKSTII TrvLSFL 240 3.87e-30 LPLPASAEKF RFHSTLNAPTAMVKHATEIPVTYLNKGQAYTLSIVDTGTMI PVGPGTRYRT PhbLSFL2 366 5.35e-30 KGSMDSTKEL RFHIVLEAPTAAAQKTGDESLTYLNRGQLYAIRLNDTYSSA GKLTSTFALT NevLSF 104 6.62e-30 TAVSSDTELS NFCFILKAPTAPGKKVNEDTLTYLNQGQSYPIDVQYIGSIS LFKGSLLTSV MygLSFL 253 7.37e-30 PPMHPSAEKF RYHATLNAPTAMIKHADEIPITYLNKGQAYTLNVVDTQVQH IMPGMKYRTF AsnLSFL2 157 7.37e-30 ASIQNPGETF RYHVTLRAPTAMINHQAEIPVTYLNKGQAYSVSVIDSTPPP MTTQPIKYRT AsnLSFL1 166 7.37e-30 ASIQNPGETF RYHVTLRAPTAMINHQAEIPVTYLNKGQAYSVSVIDSTPPP MTTQPIKYRT DapGRH 116 1.07e-28 IQIPKVFNQY GFRYYLESPISTSQRREDDRITYINKGQFYGITLEYVPDPE RPLKNQTVKT DrmGRHA 632 2.37e-28 IQIPKIFTNV GFRYHLESPISSSQRREDDRITYINKGQFYGITLEYVHDAE KPIKNTTVKS BrfGRH 238 7.14e-27 MPPPEPINGV AFEYILEAPKSLRQKPGEASMSYVNKGQFYAVTLTEAGSSP WRHHSTKVRS CiiGRH 5 9.38e-27 YSRE YFEYAMEAPKSLKQKDGEPTMSYINKGQFYCISLRECAGRP WRYKNTRVTS LogGRH 512 6.63e-26 VIQKLESNPT GYRYFLESPISTTQKIDEDRITYLNKSQYYGLTLENINTER IPKSATVKSI -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- LogLSF 1.1e-37 91_[3]_420 CapLSF 1.1e-36 98_[3]_554 Drmgemini 2.1e-36 396_[3]_495 DapLSF 3.7e-35 102_[3]_394 CiiLSF 2.8e-32 56_[3]_394 NevGRH1 3.6e-32 8_[3]_148 BrfLSF 5.2e-32 58_[3]_371 MyfLSFL 2.7e-31 321_[3]_514 AmqGRH 3e-31 268_[3]_354 HosGRHL2 3.4e-31 230_[3]_338 HosLBP1a 5.3e-31 62_[3]_437 PhbLSFL1 1.5e-30 89_[3]_374 TrvLSFL 3.9e-30 239_[3]_488 PhbLSFL2 5.3e-30 365_[3]_412 NevLSF 6.6e-30 103_[3]_383 MygLSFL 7.4e-30 252_[3]_522 AsnLSFL2 7.4e-30 156_[3]_496 AsnLSFL1 7.4e-30 165_[3]_473 DapGRH 1.1e-28 115_[3]_141 DrmGRHA 2.4e-28 631_[3]_391 BrfGRH 7.1e-27 237_[3]_323 CiiGRH 9.4e-27 4_[3]_314 LogGRH 6.6e-26 511_[3]_329 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=41 seqs=23 LogLSF ( 92) GFQYILGAATSPAVKMNEETLTYLNQGQSYEIKLKKLGDLS 1 CapLSF ( 99) SFQYVLAAATSPATKMYEETLTYLNQGQSYEIKLKKLGEMS 1 Drmgemini ( 397) KFQYILAAATSIATKNNEETLTYLNQGQSYEIKLKKIGDLS 1 DapLSF ( 103) GFQYVLAAATSIATKVNEESLTYLNQGQPYEIKMKKLGDLS 1 CiiLSF ( 57) PLQYMLCAPTSPATKVYEETLTYLNQGLPYEIKLKKLRDIP 1 NevGRH1 ( 9) RYTFILEAPTSIVQRRGDDTLTYLNKGQFYAIDFEGNFDPP 1 BrfLSF ( 59) SFQYILCAATSPASKINEETVTYLNQRQSYELRLKRLGDNS 1 MyfLSFL ( 322) RYHVTLNAPTAMIKHADEIPVTYLNKGQAYTLNVVDTHAQP 1 AmqGRH ( 269) RYLIILGAPTSIAQRQGEDTLTYLNKGQFYSIYFRANNEMV 1 HosGRHL2 ( 231) TFQYTLEATKSLRQKQGEGPMTYLNKGQFYAITLSETGDNK 1 HosLBP1a ( 63) PFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMG 1 PhbLSFL1 ( 90) RFYIGLEAPTAAAQKLEESPLTYLNKGQYYSVTLKDTETSH 1 TrvLSFL ( 240) RFHSTLNAPTAMVKHATEIPVTYLNKGQAYTLSIVDTGTMI 1 PhbLSFL2 ( 366) RFHIVLEAPTAAAQKTGDESLTYLNRGQLYAIRLNDTYSSA 1 NevLSF ( 104) NFCFILKAPTAPGKKVNEDTLTYLNQGQSYPIDVQYIGSIS 1 MygLSFL ( 253) RYHATLNAPTAMIKHADEIPITYLNKGQAYTLNVVDTQVQH 1 AsnLSFL2 ( 157) RYHVTLRAPTAMINHQAEIPVTYLNKGQAYSVSVIDSTPPP 1 AsnLSFL1 ( 166) RYHVTLRAPTAMINHQAEIPVTYLNKGQAYSVSVIDSTPPP 1 DapGRH ( 116) GFRYYLESPISTSQRREDDRITYINKGQFYGITLEYVPDPE 1 DrmGRHA ( 632) GFRYHLESPISSSQRREDDRITYINKGQFYGITLEYVHDAE 1 BrfGRH ( 238) AFEYILEAPKSLRQKPGEASMSYVNKGQFYAVTLTEAGSSP 1 CiiGRH ( 5) YFEYAMEAPKSLKQKDGEPTMSYINKGQFYCISLRECAGRP 1 LogGRH ( 512) GYRYFLESPISTTQKIDEDRITYLNKSQYYGLTLENINTER 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 41 n= 15698 bayes= 9.81568 E= 1.3e-315 -30 -293 -193 -116 -324 165 -192 -321 14 -289 -219 2 19 -152 272 -14 -36 -265 -281 23 -597 -442 -675 -662 412 -617 -321 -486 -608 -78 -422 -523 -670 -565 -542 -613 -590 -490 -136 325 -179 136 -217 54 -320 -270 284 -320 -99 -88 -219 -169 -341 234 126 -230 -44 -268 -274 21 -71 -155 -326 -279 170 -315 -62 58 -275 -184 -152 -284 -359 -323 -256 -139 -261 56 -40 401 -36 -157 -474 -384 31 -46 29 233 -351 -138 105 -354 -426 -370 -330 -330 183 160 -208 36 -425 -344 -630 -533 -211 -570 -504 -172 -510 349 177 -557 -552 -476 -458 -566 -437 -233 -320 -396 85 299 -199 246 -352 47 -211 -348 11 -315 -246 129 -350 -173 83 -231 -215 -292 -306 -295 364 -195 -555 -517 -480 -275 -538 -472 -523 -466 -396 -470 -508 -527 -487 38 -323 -307 -444 -533 161 -294 -414 -376 -437 -336 -411 -428 -357 -395 -385 -403 347 -386 -367 -312 -74 -355 -435 -486 -296 -248 -442 -437 -410 -435 -410 86 81 -386 -272 -275 -487 -376 -308 -162 349 -246 -372 -448 238 -255 -630 -620 -579 -314 -609 -590 -636 -583 -505 -510 -515 -585 -567 270 -351 -416 -534 -620 38 -159 -472 -383 -189 -346 -335 161 -350 80 306 -354 177 -369 -330 -111 41 -90 -211 -242 304 -81 -358 -288 -276 -60 -334 84 -91 -242 -185 -311 -441 -326 7 -40 -85 24 -259 -321 -217 -332 -241 -170 -379 -293 -230 -363 159 -331 -265 78 -379 269 -130 -93 127 44 -322 -318 -395 -447 -516 -345 -574 -446 265 -480 336 -427 -376 -348 -537 -245 192 -446 -390 -438 -404 -443 85 -222 -43 -165 -251 -278 -227 57 -146 13 173 -10 -70 138 125 -241 -35 105 -244 -253 34 -375 112 107 -434 206 44 -452 -209 -420 -356 209 -413 -258 -261 -265 -45 -396 -395 125 -324 -661 179 364 -664 -435 -441 -545 -296 -518 -459 -373 -477 -257 -418 -446 -421 -456 -603 -574 -51 -493 203 255 -525 -43 -353 178 -236 -444 -380 -282 -66 -230 -323 -111 -343 -396 -481 -458 -226 -256 -434 -446 -478 -343 -440 -416 -346 -470 -357 -313 204 -415 123 40 283 -341 -430 -499 -462 -375 -765 -688 -273 -666 -644 170 -668 260 249 -676 -686 -626 -630 -686 -481 192 -403 -475 -274 -239 -444 -462 -425 -413 -431 -334 -380 -428 -285 -275 -481 -403 -376 -4 374 -284 -378 -467 -741 -592 -746 -800 -361 -643 -544 -726 -758 -645 -670 -701 -733 -743 -689 -776 -746 -712 -374 495 -405 -325 -618 -524 -227 -562 -506 107 -503 336 -99 -546 -549 -477 -455 -556 -418 -24 -334 -403 -567 -476 -457 -613 -570 -509 -372 -558 -535 -607 -557 434 -614 -543 -546 -465 -502 -582 -468 -555 -395 -446 -515 -343 -576 -446 -311 -479 336 -426 -375 -347 -537 249 45 -445 -390 -438 -404 -444 -227 -322 -316 -366 -464 401 -395 -476 -348 -501 -400 -274 -467 -446 -105 -179 -404 -413 -338 -432 -298 -302 -421 -168 -427 -437 -106 -395 -315 -145 -198 -297 -406 394 -243 -387 -358 -377 -277 -424 160 -236 -498 -427 294 -380 -337 -221 -399 -56 -205 -397 31 -417 -387 128 -302 -199 -199 147 -741 -592 -746 -800 -361 -643 -544 -726 -758 -645 -670 -701 -733 -743 -689 -776 -746 -712 -374 495 140 167 -383 223 -471 118 -387 -470 -310 -450 -378 -332 -59 -351 -342 82 99 -361 -431 -451 -361 -302 -530 -507 -308 -520 -549 351 -468 114 -147 -477 -580 -531 -493 -504 -360 160 -389 -400 -195 -318 50 -146 -358 -261 -214 -356 181 -324 -254 82 -355 -181 132 69 181 -300 -312 25 -450 -368 -695 -600 115 -612 -555 -7 -577 290 189 -611 -609 -533 -524 -617 -465 177 -344 -423 -156 -286 -193 139 -316 -249 -188 39 219 -83 -210 1 -321 -10 81 -81 -35 91 -274 -264 -34 -312 227 109 -345 -36 -207 -344 179 -312 -242 6 -343 -169 5 -225 -209 -287 -302 171 -37 160 -470 -384 -190 -347 -335 126 -350 140 -101 118 -427 -369 -330 -27 186 82 -211 -243 -28 -287 -189 1 0 244 123 -313 -90 -282 -211 75 -69 -10 80 -205 37 -257 -274 22 -29 -294 239 66 -324 -39 -192 -321 13 -289 -218 -158 18 -150 -143 31 86 -45 -281 -270 -28 -268 -201 -3 -298 -254 -195 43 -102 51 260 74 111 57 7 30 -187 -230 -266 -261 -29 -287 -194 61 -317 -40 122 -51 12 -282 -213 -159 193 -149 8 115 -188 -45 -276 -267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 41 nsites= 23 E= 1.3e-315 0.043478 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.043478 0.000000 0.000000 0.043478 0.086957 0.000000 0.391304 0.086957 0.043478 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.652174 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.304348 0.000000 0.043478 0.000000 0.086957 0.000000 0.000000 0.260870 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.347826 0.130435 0.000000 0.043478 0.000000 0.000000 0.043478 0.043478 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.130435 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.130435 0.000000 0.565217 0.043478 0.000000 0.000000 0.000000 0.043478 0.043478 0.043478 0.304348 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.260870 0.173913 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.913043 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.130435 0.000000 0.391304 0.000000 0.086957 0.000000 0.000000 0.043478 0.000000 0.000000 0.130435 0.000000 0.000000 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.869565 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.000000 0.000000 0.000000 0.000000 0.260870 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.695652 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.130435 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.739130 0.000000 0.000000 0.000000 0.347826 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.652174 0.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.130435 0.217391 0.000000 0.260870 0.000000 0.000000 0.043478 0.086957 0.000000 0.000000 0.000000 0.434783 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.173913 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.086957 0.086957 0.043478 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.000000 0.086957 0.000000 0.434783 0.000000 0.043478 0.173913 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.608696 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.086957 0.086957 0.043478 0.043478 0.173913 0.130435 0.000000 0.043478 0.130435 0.000000 0.000000 0.086957 0.000000 0.130435 0.130435 0.000000 0.260870 0.043478 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.086957 0.000000 0.000000 0.217391 0.782609 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.260870 0.347826 0.000000 0.043478 0.000000 0.217391 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.304348 0.000000 0.130435 0.130435 0.434783 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.478261 0.130435 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.086957 0.913043 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.000000 0.826087 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.608696 0.000000 0.000000 0.000000 0.000000 0.347826 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.913043 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.956522 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.000000 0.304348 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.086957 0.000000 0.000000 0.260870 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.173913 0.043478 0.000000 0.304348 0.000000 0.130435 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.173913 0.130435 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.608696 0.000000 0.217391 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.086957 0.000000 0.000000 0.130435 0.173913 0.260870 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.043478 0.000000 0.565217 0.086957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.000000 0.000000 0.086957 0.304348 0.043478 0.000000 0.043478 0.000000 0.043478 0.086957 0.043478 0.043478 0.130435 0.000000 0.000000 0.043478 0.000000 0.347826 0.130435 0.000000 0.043478 0.000000 0.000000 0.217391 0.000000 0.000000 0.043478 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.130435 0.043478 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.000000 0.217391 0.000000 0.130435 0.000000 0.000000 0.000000 0.086957 0.260870 0.086957 0.000000 0.000000 0.043478 0.000000 0.000000 0.043478 0.043478 0.391304 0.086957 0.000000 0.000000 0.000000 0.000000 0.086957 0.043478 0.043478 0.086957 0.000000 0.086957 0.000000 0.000000 0.043478 0.043478 0.000000 0.391304 0.086957 0.000000 0.043478 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.130435 0.130435 0.043478 0.000000 0.000000 0.043478 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.086957 0.000000 0.130435 0.173913 0.086957 0.173913 0.086957 0.043478 0.130435 0.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.000000 0.086957 0.000000 0.043478 0.086957 0.043478 0.043478 0.000000 0.000000 0.000000 0.304348 0.000000 0.043478 0.260870 0.000000 0.043478 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [RG][FY][QH]Y[IT]LEA[PA]T[SA][PM]AQ[KH]x[GN][ED][EDI][TP][LV]TYLN[KQ]GQ[FSA]YE[IL][TK][LV]K[DK][TL]GDx[PS] -------------------------------------------------------------------------------- Time 936.73 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 57 sites = 10 llr = 1220 E-value = 2.3e-220 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 6:32::1::::2:::31:1:::3::217:::::::::::::::1a:::::::6::3: pos.-specific C :::::::::::::::::::::::::::::::::::::::::9::::::::::::::: probability D 1::21:::::::::::::::1::::1::9::::1:49::1:::::9::::::::::: matrix E :::16::1::::::::::::::1::::::::::::31::::::::1::::::::::: F ::::::::::1:::9:13:::9::7:::::::::::::::::::::::::21::::: G :::::::::::::::1:::::::::19::::1::::::::::a:::a:::::::::: H ::::::::::2221:22::1:::1:::::::::::::::1::::::::::2:::3:: I ::3:::::::::::::::::1::::::::2::::::::6:9::::::a::::1::1: K :::::::::::1:::::::1:::::::::::1::22::::::::::::::::::114 L :::::::::a1:::1:::2:21:::::1:88:9::::8::11:2:::::8::1a::: M ::::::::::::::::::1:1:::::::::2:1:::::1::::::::::2::::::: N :1:::::1:::28:::3:::::17::::::::::::::::::::::::::29::::: P ::1:::::::::::::1::::::::::::::::::::::::::3::::::::::::: Q :::43:46::3::::::1::::21::::::::::11:::7:::1::::::::::4:: R ::::::21:::1:9:::::5:::1:::::::7::7:::::::::::::a:::::2:6 S 33:1:::::::::::32::3::3::5:1:::::4::::::::::::::::::2::5: T :61::63:::21:::1::1:5::::1:1:::1:5:::111:::1::::::::::::: V ::2::4:1::1:::::::5:::::::::1::::::::12::::2::::::::::::: W ::::::::a:::::::::::::::::::::::::::::::::::::::::::::::: Y :::::::::::1:::::6::::::3:::::::::::::::::::::::::4:::::: bits 6.9 * 6.2 * 5.5 * * 4.8 * * Relative 4.1 * ** * * ** * *** * Entropy 3.4 ** *** * * * * * * * * * *** ****** * * * (176.0 bits) 2.8 ** ** *** *** * * * ** ******* * ******* ******** ** * 2.1 *********** ********** ******************** ************* 1.4 ********************************************************* 0.7 ********************************************************* 0.0 --------------------------------------------------------- Multilevel ATAQETQQWLQANRFANYVRTFANFSGADLLRLTRDDLIQICGPADGIRLYNALQSR consensus SSIAQVT HHH SHFLSL S YA IM SKE V L MF S HAK sequence VD R TN HS Q K V H R N -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------------------------------------------- CapLSF 412 2.22e-61 GEESEGLLSG DTAQQVTQWLHANRFANFVRTFQNFSGADLLRLSRDDLIQICGVADGIRLNNALQSR YSWKSMLKIK LogLSF 397 8.74e-61 KIVNIPLLGD ATAAEVTQWLHYHRFSHYVRIFQNFSGADLLRLTRDDLIQICGLADGIRLNNALQSR SVRPRLTIYV BrfLSF 320 1.03e-59 AGATEPLSPG ASIQETQNWLVHNRFGNYVRTFNNFAGADLLRLTREDLVQICGPADGIRLFNALQAR AIRPRLTMYV HosLBP1a 368 3.70e-55 QTSGEQIQPS ATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSR SVRPRLTIYV DapLSF 383 1.46e-54 QYYLQPLSAE ASAQQTAQWLQTNRFSSQARTFSRFAGADILRLTRDDLIQICGVADGIRLYNALHAK PLAPRLTLYL NevLSF 372 3.39e-52 TPSPHELTSE SSIEETRVWLQANRFHNYVSMFANYTGADLLRLTRQDVIQILGPADGIRLHNALQSR AARPLLTLYV AmqLSF 265 7.81e-52 SYQLQSLGPL ANVDETRQWLTNNRFAPYVSLFANYGGTDLLRLSRKDLMDLCGPADGIRLYNALHIR SVKRIYISFE CiiLSF 329 2.48e-47 AIKSDALLQN ATVAETQEWLQRNRFAFFMKTFSNFSALDLLTLSRDDTTHICGQADGIRLYNSLRSK PIHPPLTLYL Drmgemini 738 7.49e-47 DDYSQNIMPE STPSQVTQWLTNHRLTAYLSTFAQFSGADIMRMSKEDLIQICGLADGIRMFNILRAK TIAPRLTLYA MobLSF 464 1.01e-34 PSDPVTLTAQ STTDDVQRWLFHNHFHHFLHDLEHYDGSVLMGLDQKELITICGTAEGIRMHFLLHKK NSTR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- CapLSF 2.2e-61 411_[4]_225 LogLSF 8.7e-61 396_[4]_99 BrfLSF 1e-59 319_[4]_94 HosLBP1a 3.7e-55 367_[4]_116 DapLSF 1.5e-54 382_[4]_98 NevLSF 3.4e-52 371_[4]_99 AmqLSF 7.8e-52 264_[4]_107 CiiLSF 2.5e-47 328_[4]_106 Drmgemini 7.5e-47 737_[4]_138 MobLSF 1e-34 463_[4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=57 seqs=10 CapLSF ( 412) DTAQQVTQWLHANRFANFVRTFQNFSGADLLRLSRDDLIQICGVADGIRLNNALQSR 1 LogLSF ( 397) ATAAEVTQWLHYHRFSHYVRIFQNFSGADLLRLTRDDLIQICGLADGIRLNNALQSR 1 BrfLSF ( 320) ASIQETQNWLVHNRFGNYVRTFNNFAGADLLRLTREDLVQICGPADGIRLFNALQAR 1 HosLBP1a ( 368) ATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSR 1 DapLSF ( 383) ASAQQTAQWLQTNRFSSQARTFSRFAGADILRLTRDDLIQICGVADGIRLYNALHAK 1 NevLSF ( 372) SSIEETRVWLQANRFHNYVSMFANYTGADLLRLTRQDVIQILGPADGIRLHNALQSR 1 AmqLSF ( 265) ANVDETRQWLTNNRFAPYVSLFANYGGTDLLRLSRKDLMDLCGPADGIRLYNALHIR 1 CiiLSF ( 329) ATVAETQEWLQRNRFAFFMKTFSNFSALDLLTLSRDDTTHICGQADGIRLYNSLRSK 1 Drmgemini ( 738) STPSQVTQWLTNHRLTAYLSTFAQFSGADIMRMSKEDLIQICGLADGIRMFNILRAK 1 MobLSF ( 464) STTDDVQRWLFHNHFHHFLHDLEHYDGSVLMGLDQKELITICGTAEGIRMHFLLHKK 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 57 n= 15234 bayes= 10.8238 E= 2.3e-220 320 -84 15 -287 -342 -161 -350 -329 -321 -323 -257 -244 -409 -353 -326 109 -216 -174 -310 -379 -209 -164 -324 -358 -341 -336 -334 -254 -285 -345 -204 29 -399 -314 -286 114 331 -207 -296 -376 178 -96 -400 -318 -141 -279 -284 220 -289 -85 -50 -296 17 -313 -273 -265 46 191 -166 -198 123 -321 150 134 -354 -233 -197 -331 -98 -300 -232 -136 -309 239 -162 -13 -197 -266 -309 -293 -212 -567 93 323 -557 -328 -330 -435 -181 -406 -346 -265 -366 206 -302 -334 -309 -344 -501 -464 -212 -193 -489 -473 -328 -362 -469 -82 -424 -234 -217 -354 -483 -453 -420 -241 310 260 -380 -413 46 -245 -219 -124 -330 -240 -175 -296 -8 -268 -204 -160 -330 243 187 -209 186 -243 -258 -269 -220 -246 -311 -32 -369 -351 -53 -333 -194 -243 -143 -77 -339 371 -51 -300 -273 -122 -223 -350 -398 -289 -435 -424 -129 -396 -398 -405 -404 -249 -288 -402 -492 -417 -354 -467 -421 -350 675 -165 -392 -312 -563 -492 -206 -489 -459 -164 -468 357 -82 -508 -503 -445 -417 -519 -407 -215 -297 -364 -108 -102 -259 -174 107 -236 216 -59 -151 43 -39 -189 -311 189 -167 -208 123 88 -138 -148 117 -214 -120 -40 -239 -177 209 -241 94 -209 -140 154 -250 -73 90 -136 42 -186 -200 104 -341 -269 -207 -363 -349 -298 76 -323 -292 -391 -324 412 -415 -304 -320 -222 -264 -354 -259 -327 -329 -222 -445 -429 -436 -371 -74 -390 -114 -370 -351 -320 -390 -271 423 -404 -378 -441 -222 -392 -320 -181 -453 -428 456 -428 -409 -218 -434 -71 -173 -427 -435 -486 -436 -376 -410 -239 -110 -51 214 -146 -261 -233 -358 71 232 -350 -223 -339 -270 -202 -355 -265 -252 145 57 -243 -323 -346 45 -216 -117 -72 87 -177 219 -247 -58 -228 -162 224 16 -108 -101 67 -136 -198 -219 -190 -265 -212 -382 -343 283 -371 -93 -280 -332 -235 -218 -317 -414 28 -302 -333 -335 -263 -7 410 22 -94 -385 -315 -156 -302 -286 -4 -298 78 143 -309 -358 -328 -270 -293 10 319 -187 -227 -254 -315 -319 -208 -425 -309 134 -360 129 -314 -260 -209 -399 -143 324 121 -261 -319 -285 -321 -146 -107 17 -297 -141 -291 -273 86 -260 112 180 -247 -363 -286 -254 -189 270 -40 -165 -201 -320 -181 -453 -428 456 -428 -409 -218 -434 -71 -173 -427 -435 -486 -436 -376 -410 -239 -110 -51 172 -234 -104 86 -278 -178 -137 -275 -49 -244 -175 91 -272 142 -96 118 -138 -216 -235 -222 -329 -261 -211 -350 -348 -301 -15 -311 -241 -375 -306 409 -407 -131 -109 -216 -255 -339 -252 -328 -446 -301 -540 -524 420 -492 -226 -353 -485 -272 -296 -415 -535 -460 -432 -476 -469 -357 -37 309 84 -142 -9 -272 -338 3 -295 -358 -243 -351 -273 -149 -348 -300 -255 253 88 -313 -302 -325 -51 -274 -284 -333 -428 399 -361 -440 -316 -464 -364 -241 -428 -411 -303 -289 -358 -372 -304 -398 343 -26 -364 -306 -274 -133 -353 -250 -306 -89 -183 -320 -436 -355 -294 -43 -53 -95 -245 -334 -304 -310 388 -91 -391 -334 -290 -388 -370 -406 -359 -88 -486 -379 -362 -361 -378 -169 -320 -360 -342 -261 -558 -463 -142 -496 -436 142 -441 330 -20 -484 -483 -409 -391 -493 -355 -128 -252 -324 -344 -264 -551 -453 -133 -490 -425 -93 -430 331 253 -476 -474 -397 -378 -485 -357 -152 -241 -316 -315 -230 -422 -371 -436 -119 -222 -384 -13 -359 -333 -298 -391 -243 413 -384 -134 -415 -228 -382 -322 -246 -515 -417 -133 -461 -396 -89 -394 341 154 -443 -443 -368 -344 -451 -334 -141 -233 -304 -188 -160 -17 -316 -342 -287 -314 -289 -273 -353 -231 -148 -380 -314 -279 192 288 -247 -301 -355 -311 -260 -428 -318 -450 -358 -218 -384 113 -348 -312 -283 -406 -11 398 -374 -332 -386 -249 -370 -204 -504 247 248 -512 -313 -305 -418 153 -388 -326 -241 -359 71 -265 -314 -290 -332 -457 -428 -303 -310 387 -43 -391 -332 -288 -392 -365 -406 -358 -85 -483 -372 -359 -359 -376 -358 -319 -358 -289 -220 -488 -392 -140 -430 -376 -75 -369 332 -4 -414 -424 -351 -323 -417 -51 17 -230 -293 -272 -230 -413 -391 -226 -406 -426 360 -348 -26 63 -359 -472 -414 -372 -384 -113 147 -278 -289 -235 -247 -150 -104 -381 -364 24 -344 -243 -247 -144 -218 -347 379 -182 -316 -146 -321 -225 -369 -297 -247 -447 -425 -218 -439 -458 375 -383 31 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0.200000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.100000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.100000 0.000000 0.000000 0.000000 0.000000 0.400000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.100000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- [AS][TS][AIV][QAD][EQ][TV][QTR]QWL[QHT][AHN][NH]RF[ASH][NHS][YF][VL][RS][TL]F[ASQ]N[FY][SA]GAD[LI][LM]RL[TS][RK][DEK]DL[IV]QICG[PLV]ADGIR[LM][YFHN]N[AS]L[QHR][SA][RK] -------------------------------------------------------------------------------- Time 1187.31 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 61 sites = 16 llr = 1545 E-value = 7.9e-238 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A :9::::1::11::1:4:41::::11:::11::::::::::1:::::::::::::1:::11: pos.-specific C :::1:1:1:::::::1::::2:::::::::::::::::::::::::1::::1:::1::::: probability D 2:::::1:::12::1::::::1:212::::::::::1::::::993:::::14:55:::1: matrix E :::::24:::23::31:23::::111:::::1:::::::111:::3::33:137:::1:6: F :::1::::::::2:::::::1::::::::111::::::::::2::::::13:::::7:1:1 G :1:::::::::3::1::::::4:::::::1::::1::a:::::::::::1:::3::::::: H 2::1::::::11::1::::::::::1::1:::2::::::1:1::::::13::1::1::::: I ::3:::::1:1:::::4:::::7:1::6::2111::::613:1:::34::1::::1:34:3 K :::::21:::2::313::19:2::112:13::43145::1:2::::::::::::::::::: L ::4:9::2:4::82::3:1:::1:1:1:1:12::::::44:3::::1:::3::::::13:3 M ::1311:1:::::2::::2:::::::21:::::::::::::13:::3::::1::::3:::1 N 1::::11:1::::12:::2::1::11::11::::211::::3::13:::1::3::::1:1: P :1::::14:::::::::::::::43::::::::::1:::::::::::::::3::::::::: Q ::::::1:::2:::11::::1::::23::1:::2:1:::::::::1::21:2::3::1:1: R 3::::1:3::1::111:::1:1:1::1:13::31:2:::::1:::1::41:1::::::::: S 1::1:11:1:11::1::41::1:1112:1:::::3:1:1::::1::::1::2::1::::1: T 1::::1::81:::1:1::1:::1112:11:2::1312::1::::::1:1::::::3:2::1 V ::3:11:::5:111::3::1::1:1::33:4::2::::::6:4:::26:::::::::2111 W ::::::::::::::::::::1:::::::::::::::::::::::::::::::::::::::: Y :::4::::::::::::::::6::::::::::6:::::::1::::::::::3:::::::::: bits 6.9 6.2 5.5 4.8 Relative 4.1 * * Entropy 3.4 * * ** * ** * * * (139.3 bits) 2.8 * ** ** * * ** * * ** ** * *** * * ** ** 2.1 ***** *** ** *** **** ** ********** *********** ***** *** 1.4 ************************ ************************************ 0.7 ************************************************************* 0.0 ------------------------------------------------------------- Multilevel RALYLxEPTVxELKEAIAEKYGIPPxQIVKVYKKTKKGILVLVDDNIVREFPDEDDFIIEI consensus IM R L G KLS V R R S L INM DMIEHL EGQTM L L sequence V V E Y N -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------------------------------------- HosGRHL2 535 6.04e-51 YVRKETDDVF DALMLKSPTVKGLMEAISEKYGLPVEKIAKLYKKSKKGILVNMDDNIIEHYSNEDTFILNM ESMVEGFKVT BrfGRH 522 1.04e-48 YVRKEEDDVY DALMLREPSVQGLLSAVEEKYKVPNDKVSKVFKKSKKGILVNIDDNIIEHYCNEDTFIIEL QEETDGNIRV TraGRH 236 1.08e-47 YVKKEEETAY HALMLKNCTVAELVDCLAKKYGVRTDMITGVYKRTKKGILVNMDDQIVEHFQDEDDFEIQL NFDNQTGHFD CiiGRH 298 7.99e-47 YVRRETDDVY DGIMLCDPTLEGLKRAVSEKYGIPVQKMSKVLKKSRKGILVNVDDNIVRHYSNEDTFIIAV E AsnLSFL2 606 1.47e-46 RNDQRSDDYY RAVYLTERTVRDLMEKISMKQRIDPQRIVRVLHVKQNGLKIMVDDDVVRELPDGQDMVVEI SEASSIETAA AsnLSFL1 615 1.47e-46 RNDQRSDDYY RAVYLTERTVRDLMEKISMKQRIDPQRIVRVLHVKQNGLKIMVDDDVVRELPDGQDMVVEI SEAS MyfLSFL 771 1.16e-43 VAGKTCDNYY RAIYLMKRSLKEFNNTLAMKCGIEPTQVLRTYRINRDGLTVLFDDECIRELPEGQDMTAEF CEVQPDTPVK MygLSFL 710 1.44e-43 AGQTPPDNFH RAVYLMNRTLKDFTNAVATKCNIEPTQILRTYRINRDGLHILFDDECIREIPEGQDMTAEF SEIKVDTPIK AmqGRH 588 1.44e-43 YVRKEEEKVY NALSLRELTVEELKHQISNKYDIPDEMIHFIYKKTKKGLIVRFDDELVTRFEDEDDFIIDL DFDNQKGHFD MnlGRH 383 1.06e-41 YVKKPGEKIY SALCLNKPTLDVLKEELASKYSIPKNMVAKFYKRTKKGLLIHMDNRMVEQFQDEDDFNIEI SFQNKEGIFE NevLSF 453 2.80e-40 TQQVSGMKEY HAMFLEALTLHHLRKKLANKCSITEDQIVAVYRQGPTGIYVLVDDEMVRNLMDEAHFVLQL HREEETSLYR LogGRH 803 4.99e-40 YVKEKQDTAF TALMLKQPNVQSLLQAIEEKYKIASSSTKNLFKKSTKGILVKMDDNIIQHYSHESTFNIEI KSSVDQYDII TrvLSFL 671 1.72e-39 KAESGKKEYH RAIYLSSRTLQELNGRIAAKWGLDASLIVRTIHVTKTGIEVEMDDDVVQELREGQDMQLEI EDVVEQPSIK DrmGRHA 985 1.34e-36 YVRQENEEVY TPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDMISFYCNEDIFLLEV QQIEDDLYDV HosLBP1a 466 7.88e-33 ENGSGAPYVY HAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFST VKAESSDGIH NvGRH2 80 5.24e-32 YVRQETEKAY NAVFMEELTVESFKEAVSLRYGTPIKSVRKIEIQTNSGSIEKVDDNTIHGFDEEDTFTIVL NYNKVEGTCD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HosGRHL2 6e-51 534_[5]_14 BrfGRH 1e-48 521_[5]_19 TraGRH 1.1e-47 235_[5]_16 CiiGRH 8e-47 297_[5]_1 AsnLSFL2 1.5e-46 605_[5]_27 AsnLSFL1 1.5e-46 614_[5]_4 MyfLSFL 1.2e-43 770_[5]_45 MygLSFL 1.4e-43 709_[5]_45 AmqGRH 1.4e-43 587_[5]_15 MnlGRH 1.1e-41 382_[5]_74 NevLSF 2.8e-40 452_[5]_14 LogGRH 5e-40 802_[5]_18 TrvLSFL 1.7e-39 670_[5]_37 DrmGRHA 1.3e-36 984_[5]_18 HosLBP1a 7.9e-33 465_[5]_14 NvGRH2 5.2e-32 79_[5]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=61 seqs=16 HosGRHL2 ( 535) DALMLKSPTVKGLMEAISEKYGLPVEKIAKLYKKSKKGILVNMDDNIIEHYSNEDTFILNM 1 BrfGRH ( 522) DALMLREPSVQGLLSAVEEKYKVPNDKVSKVFKKSKKGILVNIDDNIIEHYCNEDTFIIEL 1 TraGRH ( 236) HALMLKNCTVAELVDCLAKKYGVRTDMITGVYKRTKKGILVNMDDQIVEHFQDEDDFEIQL 1 CiiGRH ( 298) DGIMLCDPTLEGLKRAVSEKYGIPVQKMSKVLKKSRKGILVNVDDNIVRHYSNEDTFIIAV 1 AsnLSFL2 ( 606) RAVYLTERTVRDLMEKISMKQRIDPQRIVRVLHVKQNGLKIMVDDDVVRELPDGQDMVVEI 1 AsnLSFL1 ( 615) RAVYLTERTVRDLMEKISMKQRIDPQRIVRVLHVKQNGLKIMVDDDVVRELPDGQDMVVEI 1 MyfLSFL ( 771) RAIYLMKRSLKEFNNTLAMKCGIEPTQVLRTYRINRDGLTVLFDDECIRELPEGQDMTAEF 1 MygLSFL ( 710) RAVYLMNRTLKDFTNAVATKCNIEPTQILRTYRINRDGLHILFDDECIREIPEGQDMTAEF 1 AmqGRH ( 588) NALSLRELTVEELKHQISNKYDIPDEMIHFIYKKTKKGLIVRFDDELVTRFEDEDDFIIDL 1 MnlGRH ( 383) SALCLNKPTLDVLKEELASKYSIPKNMVAKFYKRTKKGLLIHMDNRMVEQFQDEDDFNIEI 1 NevLSF ( 453) HAMFLEALTLHHLRKKLANKCSITEDQIVAVYRQGPTGIYVLVDDEMVRNLMDEAHFVLQL 1 LogGRH ( 803) TALMLKQPNVQSLLQAIEEKYKIASSSTKNLFKKSTKGILVKMDDNIIQHYSHESTFNIEI 1 TrvLSFL ( 671) RAIYLSSRTLQELNGRIAAKWGLDASLIVRTIHVTKTGIEVEMDDDVVQELREGQDMQLEI 1 DrmGRHA ( 985) TPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDMISFYCNEDIFLLEV 1 HosLBP1a ( 466) HAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFST 1 NvGRH2 ( 80) NAVFMEELTVESFKEAVSLRYGTPIKSVRKIEIQTNSGSIEKVDDNTIHGFDEEDTFTIVL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 61 n= 15118 bayes= 10.62 E= 7.9e-238 -258 -352 158 -191 -424 -222 237 -451 -191 -419 -359 143 -394 -245 248 -46 84 -395 -385 -346 361 -117 -466 -420 -388 3 -454 -373 -425 -368 -301 -398 -47 -449 -400 -196 -262 -211 -354 -444 -388 -307 -686 -611 -237 -587 -577 218 -590 245 150 -595 -622 -568 -561 -598 -407 210 -359 -421 -190 141 -317 -273 198 -314 76 -222 -270 -193 282 -276 -355 -317 -250 -110 -272 -201 -16 375 -339 -265 -527 -428 -161 -476 -411 -113 -406 341 112 -455 -458 -382 -357 -464 -350 -22 -258 -327 -119 176 -155 143 -278 -212 -151 -272 154 -243 201 38 -284 -110 117 -44 74 -7 -236 -227 5 -276 14 234 -305 -227 -171 -300 110 -268 -197 113 -30 25 -122 22 -170 -242 -262 -251 -201 192 -414 -335 -216 -340 -324 -151 -231 111 131 -338 251 -315 233 -319 -247 -142 -247 -282 -252 -195 -388 -406 -369 -399 -375 -38 -320 -371 -225 -12 -435 -346 -318 28 352 -228 -323 -413 -6 -208 -552 -475 -257 -417 -445 -75 -449 213 -159 -446 -506 -470 -432 -410 -5 303 -313 -341 9 -251 7 143 -281 -211 76 -13 154 -246 -175 -119 -283 142 117 -44 -149 -222 -238 -228 -219 -368 154 229 -415 190 82 -405 -167 -375 -310 -140 -372 -193 -230 25 -253 -6 -373 -347 -402 -319 -622 -526 200 -555 -486 -138 -503 325 -62 -544 -541 -464 -450 -555 -415 7 -289 -353 6 -191 -217 -134 -221 -246 -193 -166 186 100 266 109 -320 -161 39 -210 2 22 -212 -222 -125 -257 9 204 -288 -1 77 -286 50 -254 -183 162 -289 26 118 -44 -155 -229 -245 -234 234 182 -188 29 -309 -235 -171 -299 194 -266 -197 -146 -312 25 56 -197 -2 -241 -257 -253 -367 -287 -623 -583 -307 -577 -620 303 -559 185 -181 -559 -627 -601 -574 -580 -381 213 -433 -453 265 -220 -343 158 -514 -264 -464 -511 -413 -500 -427 -353 -450 -401 -438 186 -298 -359 -472 -524 9 -245 -156 176 -274 -213 -153 -264 50 35 256 160 -285 -112 -102 -44 2 -212 -235 -227 -342 -309 -486 -419 -511 -432 -397 -391 401 -447 -371 -354 -480 -412 -7 -474 -390 -250 -340 -459 -386 359 -496 -462 127 -474 -190 -377 -442 -324 -315 -408 -520 90 -403 -444 -440 -363 274 408 -258 -352 30 -193 -425 254 -229 -448 160 -414 -354 141 -395 -241 124 32 -260 -392 -380 -347 -290 -250 -419 -400 -239 -419 -440 365 -357 19 -59 -368 -484 -424 -382 -396 -152 131 -291 -301 -15 -289 112 75 -346 -272 -245 -338 -160 -304 -262 -208 287 -203 7 -77 -30 -281 -323 -328 9 -244 6 36 -274 -213 -152 -11 50 -46 -169 37 149 -112 -102 -44 74 76 -235 -226 -130 -262 134 101 -294 -213 77 -292 48 -260 -189 42 -293 143 -112 24 124 -235 -251 -239 -238 -335 -298 -192 -401 -317 -222 -360 180 -43 276 -223 -396 192 147 73 -256 -312 -310 -324 -293 -251 -429 -409 -246 -427 -449 361 -367 -41 45 -378 -492 -434 -392 -405 -132 162 -300 -309 76 -231 -166 -84 -261 -218 75 -238 47 38 -159 111 -290 -119 44 21 2 169 -229 -224 -1 -291 -210 -124 45 0 -184 -320 228 -284 -217 115 -333 25 244 -221 -197 -266 -273 -272 -249 -200 -534 -457 67 -427 -423 178 -431 73 -140 -434 -495 -454 -412 -418 135 288 -292 -324 -177 -147 -305 -70 198 -303 -35 -44 -259 44 -148 -267 -343 -308 -239 -257 -261 -189 -12 402 -346 -399 -465 -295 -524 -399 238 2 290 -379 -327 -300 -489 -198 265 -396 -342 -389 -356 -395 -258 -323 -342 -224 -388 -338 -238 97 240 -307 -253 -248 -419 155 148 -317 -8 148 -309 -331 -270 -327 -155 -228 -442 102 -254 -450 101 -447 -374 188 -415 -281 -279 123 220 -395 -403 -373 -269 -358 -333 -219 -439 -339 -235 -389 284 -344 -285 30 72 105 196 -318 -9 -341 -327 -347 -283 -368 111 -208 -452 -225 -240 -488 295 -455 -400 146 -412 -268 -265 -47 140 -432 -412 -366 -325 -400 -411 -464 -542 412 -479 -569 -445 -579 -496 -373 -540 -536 -428 -428 -492 -506 -415 -514 -344 -284 -600 -544 -230 -512 -520 329 -510 214 -119 -516 -575 -521 -498 -87 -367 -72 -330 -376 -147 -161 -266 4 -189 -266 162 105 96 197 -95 -210 -342 -204 -176 -236 77 -99 -195 69 -31 -155 -427 -81 -288 -401 -381 188 -382 -199 -193 -406 -421 -435 -347 -405 -220 348 -344 -405 -168 -286 -211 25 -328 -256 80 -310 168 132 211 204 -331 -137 64 -219 -194 -258 -269 -268 -352 -277 -652 -579 223 -548 -551 135 -556 -137 365 -555 -602 -560 -539 -551 -372 266 -365 -405 -317 -323 389 -105 -406 -342 -301 -408 -380 -422 -374 -99 -497 -391 -374 -224 -388 -374 -334 -373 -314 -319 389 -99 -400 -340 -296 -402 -377 -416 -368 -43 -494 -387 -369 -368 -386 -368 -328 -367 -263 -450 196 212 -505 -291 -298 -474 -214 -443 -383 248 -408 101 26 -303 -309 -398 -461 -421 -218 300 -498 -414 -204 -376 -370 242 -382 5 323 -383 -454 -403 -364 -363 -3 176 -240 -270 -370 -283 -685 -641 -387 -622 -732 297 -634 -242 -265 -621 -673 -703 -668 -641 -391 326 -570 -535 -160 -288 -182 183 -326 -246 79 -315 -53 -281 -213 -151 -322 148 264 -52 -2 -259 -272 -266 -148 -266 -159 200 36 -5 305 -306 -81 -271 -201 113 -307 21 40 -190 -174 -250 -249 -217 -464 -364 -637 -595 303 -572 -324 27 -561 198 -172 -516 -609 -520 -504 -569 -484 -298 -152 323 -119 272 7 37 -281 -212 -152 -278 -56 -246 110 -120 151 141 45 67 -150 -222 -239 -229 -317 -417 278 197 -517 -245 87 -554 -272 -525 -484 228 -438 -289 -353 -275 -316 -487 -482 -418 -373 -503 -265 348 -642 241 -485 -620 -387 -583 -540 -387 -533 -363 -479 -468 -468 -526 -559 -587 -4 -348 292 -127 -491 -247 -285 -509 -255 -481 -425 -124 -425 227 -322 33 -297 -425 -453 -412 -211 197 281 -230 -295 -257 77 12 -230 -263 -212 -145 -399 -277 -266 -229 215 -206 -293 -298 -497 -393 -696 -665 415 -599 -410 -240 -626 -144 369 -579 -643 -567 -561 -626 -523 -307 -208 -142 -155 -128 -363 -14 -157 -294 -271 201 -251 73 -67 103 -372 -8 -253 -272 130 163 -175 -204 45 -219 -496 -441 41 -424 -425 310 -405 139 -98 -411 -494 -439 -403 -409 -282 130 -279 -307 -6 -398 32 307 -422 -303 -267 -389 -154 -358 -291 28 -363 100 -225 -65 -259 -7 -377 -360 -237 -189 -504 -422 155 -389 -376 248 -389 189 144 -393 -461 -402 -368 -375 -11 121 -230 -270 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability 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0.000000 0.062500 0.125000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- RA[LIV][YM]LxE[PR]T[VL]x[EG]LKE[AK][ILV][AS]EKYGIPPxQ[IV]V[KR]VY[KR]K[TS]KKG[IL]L[VI][LN][VM]DD[NDE][IM][VI][RE][EH][FLY]P[DEN][EG][DQ][DT][FM]I[IL]E[IL] -------------------------------------------------------------------------------- Time 1422.67 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 15 sites = 26 llr = 799 E-value = 1.7e-158 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A ::::::::::2:::1 pos.-specific C :::::::::2::::: probability D :::::::::::5::: matrix E :3:::::::::2:23 F ::::::3::::::3: G a::a::::::::::: H :::::::3::::::: I ::::4:::3:4:::1 K ::a::::::::2::: L ::::2:5:5:1:::: M ::::::::::1:::2 N ::::::::::::::: P :::::a::::::::: Q :::::::::7::::: R :::::::6::::::: S ::::::::::::::2 T ::::::::::::9:: V :6::3:2:112:::: W ::::::::::::::: Y :::::::::::::4: bits 6.9 6.2 5.5 4.8 Relative 4.1 * ** Entropy 3.4 * ** * * * (44.3 bits) 2.8 **** *** * ** 2.1 ************** 1.4 *************** 0.7 *************** 0.0 --------------- Multilevel GVKGIPLRLQIDTYE consensus E V FHI FS sequence L -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- TraGRH 86 5.48e-18 CLSTDFSPQK GVKGIPLHLQIDTYE DLTSSDVEPV NevGRH1 144 5.48e-18 CLSTDFSPQK GVKGIPLHLQIDTYE DVDNPDAEPV CiiLSF 192 1.20e-16 STEFTVRKHG GEKGVPFRIQIDTYA LQNNNEYGRY CapGRH 108 2.86e-16 CLSTDFSNQK GVKGLPLHLQIDTFE DTSSATPIHR Drmgemini 533 4.86e-16 STEFTPKKHG GEKGVPFRLQIETYI ENTNSATASG DapLSF 237 7.87e-16 STEFTPKKHG GEKGVPFRIQVETYS HGDGDGTPKR DrmGRHA 767 1.11e-15 CLSTDFSSQK GVKGLPLHVQIDTFE DPRDTAVFHR CapLSF 224 1.39e-15 STEFTAKKHG GEKGVPFRIQVETYI GDIHPARIVH HosGRHL2 367 1.55e-15 CLSTDFSSQK GVKGLPLMIQIDTYS YNNRSNKPIH LogLSF 226 2.14e-15 STEFTAKKHG GEKGVPFRIQLDTFS HEEEEEKLLH DapGRH 251 2.64e-15 CLSTDFSSQK GVKGLPLHLQIDTFD DPRDSIPVFH MygLSFL 403 4.88e-15 FLSTDFSHSK GVKGIPVRLCAKTEM IEDPSGNASK AsnLSFL2 309 4.88e-15 FLSTDFSHSK GVKGIPVRLCAKTEM VSPDDTSSTS AsnLSFL1 318 4.88e-15 FLSTDFSHSK GVKGIPVRLCAKTEM VSPDDTSSTS BrfLSF 194 6.59e-15 STEFTAHRHG GEKGIPFRIQVDSYS IEEEHLHSAS AmqGRH 400 1.72e-14 CLSTEFSGQK GVKGLPLHVVVDTYE FQDNDRMTEH CiiGRH 139 1.90e-14 CLSTDFSAQK GIKGLPLLLQIDTYM DNRRGAAPAH LogGRH 647 2.28e-14 CLSTDFSNQK GVKGISLHVQIDTFE ENHSVPIHRG MyfLSFL 472 3.31e-14 FLSTDFSHSK GVKGIPVRLCAKTEA IEESTTPTGP HosLBP1a 200 6.80e-14 STEFTPRKHG GEKGVPFRIQVDAFK QNENGEYTDH MnlGRH 102 9.67e-14 CLSTEFSSQK GVKGTPLYIQLDTFE DMESLNPEPA AmqLSF 123 1.25e-13 SSEFTAKKHG GEKGVPFRLVLNTYS IPSIEDTGGT TrvLSFL 391 2.67e-13 FLSTDFSHSK GVKGIPVRLCAKTSL FSSDQLPSPP PhbLSFL1 227 2.67e-13 CLSTDFSRIK GVKGIPLRLQMGTQV VGEQHIEKAY PhbLSFL2 495 1.52e-12 CLSTDFSRIK GVKGIPMRAHMETKM NFSAPSPTLG NevLSF 239 5.79e-12 SSEFTKGKSG GESGVPLQIQIETWS IDASFDELPM -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- TraGRH 5.5e-18 85_[6]_212 NevGRH1 5.5e-18 143_[6]_39 CiiLSF 1.2e-16 191_[6]_285 CapGRH 2.9e-16 107_[6]_233 Drmgemini 4.9e-16 532_[6]_385 DapLSF 7.9e-16 236_[6]_286 DrmGRHA 1.1e-15 766_[6]_282 CapLSF 1.4e-15 223_[6]_455 HosGRHL2 1.6e-15 366_[6]_228 LogLSF 2.1e-15 225_[6]_312 DapGRH 2.6e-15 250_[6]_32 MygLSFL 4.9e-15 402_[6]_398 AsnLSFL2 4.9e-15 308_[6]_370 AsnLSFL1 4.9e-15 317_[6]_347 BrfLSF 6.6e-15 193_[6]_262 AmqGRH 1.7e-14 399_[6]_249 CiiGRH 1.9e-14 138_[6]_206 LogGRH 2.3e-14 646_[6]_220 MyfLSFL 3.3e-14 471_[6]_390 HosLBP1a 6.8e-14 199_[6]_326 MnlGRH 9.7e-14 101_[6]_401 AmqLSF 1.3e-13 122_[6]_291 TrvLSFL 2.7e-13 390_[6]_363 PhbLSFL1 2.7e-13 226_[6]_263 PhbLSFL2 1.5e-12 494_[6]_309 NevLSF 5.8e-12 238_[6]_274 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=15 seqs=26 TraGRH ( 86) GVKGIPLHLQIDTYE 1 NevGRH1 ( 144) GVKGIPLHLQIDTYE 1 CiiLSF ( 192) GEKGVPFRIQIDTYA 1 CapGRH ( 108) GVKGLPLHLQIDTFE 1 Drmgemini ( 533) GEKGVPFRLQIETYI 1 DapLSF ( 237) GEKGVPFRIQVETYS 1 DrmGRHA ( 767) GVKGLPLHVQIDTFE 1 CapLSF ( 224) GEKGVPFRIQVETYI 1 HosGRHL2 ( 367) GVKGLPLMIQIDTYS 1 LogLSF ( 226) GEKGVPFRIQLDTFS 1 DapGRH ( 251) GVKGLPLHLQIDTFD 1 MygLSFL ( 403) GVKGIPVRLCAKTEM 1 AsnLSFL2 ( 309) GVKGIPVRLCAKTEM 1 AsnLSFL1 ( 318) GVKGIPVRLCAKTEM 1 BrfLSF ( 194) GEKGIPFRIQVDSYS 1 AmqGRH ( 400) GVKGLPLHVVVDTYE 1 CiiGRH ( 139) GIKGLPLLLQIDTYM 1 LogGRH ( 647) GVKGISLHVQIDTFE 1 MyfLSFL ( 472) GVKGIPVRLCAKTEA 1 HosLBP1a ( 200) GEKGVPFRIQVDAFK 1 MnlGRH ( 102) GVKGTPLYIQLDTFE 1 AmqLSF ( 123) GEKGVPFRLVLNTYS 1 TrvLSFL ( 391) GVKGIPVRLCAKTSL 1 PhbLSFL1 ( 227) GVKGIPLRLQMGTQV 1 PhbLSFL2 ( 495) GVKGIPMRAHMETKM 1 NevLSF ( 239) GESGVPLQIQIETWS 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 15 n= 16452 bayes= 9.83447 E= 1.7e-158 -457 -514 -537 -592 -653 416 -595 -694 -573 -690 -624 -504 -646 -657 -551 -558 -615 -632 -525 -629 -427 -349 -619 243 -453 -660 -752 10 -642 -311 -332 -657 -716 -672 -695 -677 -453 340 -626 -592 -358 -326 -502 -440 -528 -447 -418 -410 403 -467 -391 -373 -498 -436 -53 -302 -408 -457 -358 -478 -457 -514 -537 -592 -653 416 -595 -694 -573 -690 -624 -504 -646 -657 -551 -558 -615 -632 -525 -629 -412 -334 -670 -630 -393 -622 -674 299 -606 148 -260 -605 -679 -662 -627 -623 -78 241 -513 -515 -255 -364 -430 -393 -459 -396 -428 -451 -372 -415 -412 -430 385 -405 -385 -141 -363 -393 -457 -507 -534 -438 -846 -753 301 -724 -658 -221 -730 258 96 -746 -719 -635 -659 -761 -553 171 -386 -473 -398 -430 -512 -362 -381 -459 296 -453 -99 -100 68 -364 -543 -41 351 -453 -400 -421 -337 24 -78 -348 -741 -681 -375 -657 -699 265 -667 263 -265 -661 -706 -690 -668 -669 -452 121 -510 -536 -267 333 -457 -249 -382 -391 13 -392 -300 -343 -260 -339 -453 363 -270 -371 -359 -1 -309 -352 140 -302 -647 -579 -331 -550 -561 293 -552 63 171 -551 -617 -578 -544 -544 -386 181 -411 -437 -363 -505 309 173 -595 -46 -353 -597 167 -567 -519 -1 -493 -321 -407 -353 -384 -522 -556 -495 -71 -246 -475 -490 -452 -389 -461 -367 -413 -454 -315 -307 -492 -432 -405 -76 376 -307 -406 -495 -187 -159 -312 45 254 -313 -44 -231 -106 -199 -169 -277 -352 -122 -248 -153 -275 -209 157 385 25 -256 -51 195 -286 -283 -229 38 -13 -80 281 -203 -356 -193 -183 103 -209 -38 -270 -273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 15 nsites= 26 E= 1.7e-158 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.346154 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.961538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.423077 0.000000 0.230769 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.307692 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.961538 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.000000 0.000000 0.461538 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.000000 0.000000 0.038462 0.038462 0.000000 0.000000 0.038462 0.576923 0.000000 0.000000 0.000000 0.000000 0.038462 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.346154 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.115385 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.423077 0.000000 0.115385 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.000000 0.000000 0.000000 0.538462 0.192308 0.000000 0.038462 0.000000 0.000000 0.192308 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.923077 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.269231 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.038462 0.000000 0.000000 0.038462 0.423077 0.076923 0.000000 0.038462 0.269231 0.000000 0.000000 0.000000 0.076923 0.038462 0.038462 0.192308 0.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.038462 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- G[VE]KG[IVL]P[LF][RH][LI]QIDT[YF][ES] -------------------------------------------------------------------------------- Time 1632.33 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 21 sites = 26 llr = 891 E-value = 3.5e-150 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A ::::::::::1:1322:1::: pos.-specific C ::1::::::::::::2::::: probability D :::::51:1:12::::::::: matrix E ::::1541:1216:3::2::: F :::a::::::::::::1:2:: G ::::1:1:::::::::::::: H 1:::3:::1::::::2::::3 I :2::::::::::::::2:::: K :::::::3::12::2::2::3 L :4::::::3::::2::1:2:: M 2:1::::::::2::::::::1 N ::::::::::::::::::::: P ::::::::12::2:::::::: Q 1:::1::1232:1113:41:: R 4:::2:33:4:::1::::::1 S ::2::::12::::11:::::: T ::1::::::::1::::::1:: V :55::::::::2::::::::: W ::::::::::::::::6::a: Y ::::::::::2::1:1::2:1 bits 6.9 * 6.2 * 5.5 * 4.8 * * Relative 4.1 * * * Entropy 3.4 * * * (49.4 bits) 2.8 * * * * * 2.1 ******** * * ** ** 1.4 ************* ******* 0.7 ********************* 0.0 --------------------- Multilevel RVVFHDEKLRYxEAEQWQFWK consensus LS RERR Q K Y H sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- DapGRH 169 6.26e-20 LKNQTVKTMV MLVFREEKSPEDEAKAWQFWH GRQHSAKQRI CiiLSF 110 4.15e-19 GTLKHVKSQL RVVFHDRRLQYTEYEQFQNWK FNRPGDRLLN MygLSFL 305 1.10e-18 MPGMKYRTFV RVSFEDEQQRQKPAACWQLWK EGRGTNEAHQ MyfLSFL 374 1.10e-18 APATKYRTFV RVSFEDEQQRQKPAACWQLWK EGRGTNEAHQ DrmGRHA 685 2.81e-18 IKNTTVKSVI MLMFREEKSPEDEIKAWQFWH SRQHSVKQRI CapLSF 142 3.81e-18 LKKLGEMSIV RVVFHERRLQYMESEQITTWK HNRPGDRILD DapLSF 155 1.24e-17 FRGKLLRSVV RLCFHERRLQYMEREQIAAWR MSRPGDRIVE TraGRH 5 1.66e-17 LSIL HLVFREEKEPDNEMSHWQYWY SQQPNPNQRA BrfLSF 112 1.66e-17 QGGELLKSVV RVVFHDRRLQYTEYEQLAQWR SIRPNERLLD NevGRH1 63 1.91e-17 EDIIRVKSVV HLVFRDEKDPRAELEHWNYWH SQQPNPQQRA LogLSF 144 3.36e-17 SHGKLLKSLV RVHFHERRLQYMEKQQIETWK QNRPGERILD AsnLSFL2 210 3.86e-17 TQPIKYRTFI RVSFQEDEQRAKPAACWQLWK EGRGSNEAHQ AsnLSFL1 219 3.86e-17 TQPIKYRTFI RVSFQEDEQRAKPAACWQLWK EGRGSNEAHQ HosLBP1a 118 5.09e-17 INGKLVKSII RVVFHDRRLQYTEHQQLEGWK WNRPGDRLLD HosGRHL2 285 6.68e-17 HPISKVRSVV MVVFSEDKNRDEQLKYWKYWH SRQHTAKQRV LogGRH 564 3.68e-16 PKSATVKSII MLVFRDHKSPEDERKAFEFWH SRQHSYKQRL CapGRH 1 5.38e-16 . MVVFREEKPGQDDAKAWDFWY SRQHSIKMRI Drmgemini 449 1.00e-15 YRDKILKSVI KICFHERRLQFMEREQMQQWQ QSRPGERIIE BrfGRH 291 1.13e-15 HHSTKVRSVI QVVFGDGRSEEEQLKHWRYWH ARQHTARQRI AmqGRH 319 2.94e-15 VLPSQAKSVI HLSFLDESDRTVEQSHWQYWY ELQANPNQKA TrvLSFL 293 3.31e-15 GPGTRYRTYV RISFEDEQQRQKPGVCWSLWK EGRGTNEAHQ CiiGRH 58 1.16e-14 YKNTRVTSVV QIVFGDGKPEDEQLRHWKYWH ARQHTAKQRI NevLSF 156 5.90e-13 FKGSLLTSVV TLTFYERKLQVVEAEKFEEWR NNHPLERIFE PhbLSFL1 140 7.85e-13 HADQIVKSTI IIMFNDESHRKVAQSYWKFWL SQQKDAQSAR AmqLSF 41 1.51e-12 TEYSLLKSSI SLEFHDLRLRNSEETQIQQWM NDNNGQRMLE PhbLSFL2 414 3.14e-12 SSAGKLTSTF ALTFHNPAHRKVASNYWKFWM SQQRATHHAR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- DapGRH 6.3e-20 168_[7]_108 CiiLSF 4.2e-19 109_[7]_361 MygLSFL 1.1e-18 304_[7]_490 MyfLSFL 1.1e-18 373_[7]_482 DrmGRHA 2.8e-18 684_[7]_358 CapLSF 3.8e-18 141_[7]_531 DapLSF 1.2e-17 154_[7]_362 TraGRH 1.7e-17 4_[7]_287 BrfLSF 1.7e-17 111_[7]_338 NevGRH1 1.9e-17 62_[7]_114 LogLSF 3.4e-17 143_[7]_388 AsnLSFL2 3.9e-17 209_[7]_463 AsnLSFL1 3.9e-17 218_[7]_440 HosLBP1a 5.1e-17 117_[7]_402 HosGRHL2 6.7e-17 284_[7]_304 LogGRH 3.7e-16 563_[7]_297 CapGRH 5.4e-16 [7]_334 Drmgemini 1e-15 448_[7]_463 BrfGRH 1.1e-15 290_[7]_290 AmqGRH 2.9e-15 318_[7]_324 TrvLSFL 3.3e-15 292_[7]_455 CiiGRH 1.2e-14 57_[7]_281 NevLSF 5.9e-13 155_[7]_351 PhbLSFL1 7.9e-13 139_[7]_344 AmqLSF 1.5e-12 40_[7]_367 PhbLSFL2 3.1e-12 413_[7]_384 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=21 seqs=26 DapGRH ( 169) MLVFREEKSPEDEAKAWQFWH 1 CiiLSF ( 110) RVVFHDRRLQYTEYEQFQNWK 1 MygLSFL ( 305) RVSFEDEQQRQKPAACWQLWK 1 MyfLSFL ( 374) RVSFEDEQQRQKPAACWQLWK 1 DrmGRHA ( 685) MLMFREEKSPEDEIKAWQFWH 1 CapLSF ( 142) RVVFHERRLQYMESEQITTWK 1 DapLSF ( 155) RLCFHERRLQYMEREQIAAWR 1 TraGRH ( 5) HLVFREEKEPDNEMSHWQYWY 1 BrfLSF ( 112) RVVFHDRRLQYTEYEQLAQWR 1 NevGRH1 ( 63) HLVFRDEKDPRAELEHWNYWH 1 LogLSF ( 144) RVHFHERRLQYMEKQQIETWK 1 AsnLSFL2 ( 210) RVSFQEDEQRAKPAACWQLWK 1 AsnLSFL1 ( 219) RVSFQEDEQRAKPAACWQLWK 1 HosLBP1a ( 118) RVVFHDRRLQYTEHQQLEGWK 1 HosGRHL2 ( 285) MVVFSEDKNRDEQLKYWKYWH 1 LogGRH ( 564) MLVFRDHKSPEDERKAFEFWH 1 CapGRH ( 1) MVVFREEKPGQDDAKAWDFWY 1 Drmgemini ( 449) KICFHERRLQFMEREQMQQWQ 1 BrfGRH ( 291) QVVFGDGRSEEEQLKHWRYWH 1 AmqGRH ( 319) HLSFLDESDRTVEQSHWQYWY 1 TrvLSFL ( 293) RISFEDEQQRQKPGVCWSLWK 1 CiiGRH ( 58) QIVFGDGKPEDEQLRHWKYWH 1 NevLSF ( 156) TLTFYERKLQVVEAEKFEEWR 1 PhbLSFL1 ( 140) IIMFNDESHRKVAQSYWKFWL 1 AmqLSF ( 41) SLEFHDLRLRNSEETQIQQWM 1 PhbLSFL2 ( 414) ALTFHNPAHRKVASNYWKFWM 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 16278 bayes= 9.81911 E= 3.5e-150 -51 -324 -251 -164 -362 -298 167 -59 8 -316 282 -207 -372 45 292 -105 -54 -293 -311 -309 -450 -360 -768 -715 -386 -695 -760 159 -707 226 -274 -697 -735 -732 -718 -717 -470 300 -543 -567 -209 237 -450 -72 -210 -352 15 -129 -335 -163 171 -350 -435 -362 -327 104 27 285 -230 -260 -594 -454 -679 -690 476 -609 -600 -518 -683 -427 -473 -664 -663 -717 -656 -648 -664 -532 -366 -309 -200 -292 -223 74 -305 14 346 -348 -137 -111 -235 -17 -352 36 188 -111 -222 -291 -262 10 -337 -605 296 293 -649 -393 -410 -566 -305 -537 -480 -25 -484 -276 -420 -411 -411 -478 -601 -550 -250 -420 94 260 -451 34 22 -428 -189 -106 -329 -240 -81 -218 249 -313 -296 -364 -405 -389 -74 -431 -420 34 -524 -417 -305 -462 259 -415 -358 -321 -501 98 279 -39 -359 -415 -397 -422 -198 -327 37 -16 -362 -268 113 -361 -135 188 -260 -6 8 158 -182 55 -225 -305 -320 -306 -349 -453 -315 49 -549 -56 -325 -487 -115 -442 -386 -300 145 231 291 -400 -372 -434 -429 -447 26 -300 80 126 -13 -260 -199 -326 62 -294 -224 -12 -332 127 -4 -218 -48 -57 -286 249 -41 -301 117 93 -330 -262 -201 -326 164 -295 245 -12 -334 -160 -150 -94 72 116 -288 -278 16 -693 -17 323 -675 -443 -446 -546 -293 -517 -457 -386 143 96 -417 -449 -421 -454 -618 -580 176 -297 -204 -12 -326 -52 26 -62 1 72 61 -169 -333 45 114 -28 -198 -265 -285 98 105 -301 -203 195 -331 -261 -200 -328 186 -296 -225 -12 -333 45 -3 18 -48 -58 -288 -277 109 369 -335 -255 -355 -359 246 -388 4 -366 -309 -268 -452 229 -150 -337 -309 -345 -323 169 -536 -439 -828 -743 164 -712 -629 150 -718 42 95 -728 -714 -628 -648 -749 -554 -310 608 -425 25 -304 -42 127 -334 -263 -203 -331 137 -299 -228 -12 -336 260 -4 -95 -49 -274 -291 -281 -71 -180 -291 -80 239 -93 -86 -222 -220 74 -168 -65 -356 41 -228 -261 -18 -197 -73 326 -539 -426 -569 -567 -279 -518 -533 -552 -546 -398 -437 -543 -615 -560 -495 -607 -562 -498 683 -314 -385 -448 -488 -336 -554 -444 297 -478 261 -102 165 -347 -532 -36 141 -436 -386 -435 -407 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 26 E= 3.5e-150 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.115385 0.038462 0.038462 0.000000 0.192308 0.000000 0.000000 0.076923 0.423077 0.038462 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.000000 0.384615 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.461538 0.000000 0.000000 0.000000 0.076923 0.000000 0.038462 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.230769 0.076923 0.461538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.115385 0.000000 0.076923 0.346154 0.000000 0.000000 0.038462 0.000000 0.038462 0.000000 0.076923 0.230769 0.038462 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.500000 0.461538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.115385 0.384615 0.000000 0.076923 0.038462 0.000000 0.000000 0.038462 0.000000 0.000000 0.038462 0.000000 0.307692 0.000000 0.000000 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 0.346154 0.000000 0.000000 0.000000 0.000000 0.115385 0.346154 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.038462 0.000000 0.000000 0.076923 0.000000 0.000000 0.346154 0.000000 0.038462 0.076923 0.192308 0.000000 0.153846 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.192308 0.307692 0.384615 0.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.115385 0.153846 0.038462 0.000000 0.000000 0.000000 0.076923 0.000000 0.000000 0.038462 0.000000 0.153846 0.038462 0.000000 0.038462 0.038462 0.000000 0.230769 0.038462 0.000000 0.153846 0.115385 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.153846 0.038462 0.000000 0.000000 0.000000 0.038462 0.115385 0.153846 0.000000 0.000000 0.076923 0.000000 0.038462 0.576923 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.192308 0.115385 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.000000 0.000000 0.038462 0.000000 0.038462 0.038462 0.038462 0.038462 0.153846 0.038462 0.000000 0.000000 0.076923 0.115385 0.076923 0.000000 0.000000 0.000000 0.076923 0.153846 0.000000 0.000000 0.269231 0.000000 0.000000 0.000000 0.000000 0.230769 0.000000 0.000000 0.038462 0.000000 0.076923 0.038462 0.115385 0.038462 0.038462 0.000000 0.000000 0.153846 0.192308 0.000000 0.000000 0.000000 0.000000 0.192308 0.000000 0.038462 0.000000 0.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.000000 0.000000 0.000000 0.115385 0.000000 0.000000 0.000000 0.000000 0.115385 0.000000 0.000000 0.153846 0.000000 0.076923 0.038462 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.076923 0.000000 0.038462 0.153846 0.000000 0.000000 0.000000 0.000000 0.153846 0.000000 0.000000 0.038462 0.000000 0.423077 0.038462 0.038462 0.038462 0.000000 0.000000 0.000000 0.038462 0.000000 0.000000 0.038462 0.230769 0.038462 0.000000 0.000000 0.000000 0.192308 0.000000 0.038462 0.000000 0.115385 0.000000 0.000000 0.076923 0.000000 0.000000 0.230769 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.269231 0.000000 0.346154 0.038462 0.076923 0.000000 0.000000 0.038462 0.115385 0.000000 0.000000 0.000000 0.000000 0.115385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- R[VL][VS]F[HR][DE][ER][KR]L[RQ]YxEA[EK]QWQ[FY]W[KH] -------------------------------------------------------------------------------- Time 1836.12 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 57 sites = 5 llr = 686 E-value = 1.5e-084 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A ::::::42:22::::4:::::4::4:::::::::::4::::::::::::::2::::: pos.-specific C ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: probability D ::::::::4::::::::4a:::::::::a:::::::::::::::24:aa:a:::::: matrix E ::::::::::::::::a6::::::::::::::::::::::::::86::::::::::: F :::::::::::::::::::::2::::::::a:::::::::::::::::::::4:::: G :::::4222428:4::::::::::::::::::::::::::4::a::4:::::::::: H ::::::::::::::::::::a:::::::::::::::::::::::::::::::2:::: I ::::::::::::::::::::::::::::::::::::::6:::::::::::::::::: K ::::::::::::4:::::::::a::::::::::::::::::::::::::::::::4: L :::::::::::::2:6:::8:::a:46::::::::::::a:a::::2::::8::::a M 2::44::::::::4:::::2:4::4:4::a:::::::::::::::::::::::::4: N ::::2::::4::::::::::::::::::::::::::::::::::::::::::::::: P ::::::::::42:::::::::::::::::::::::a:::::::::::::a:::a::: Q :::::::4::::::::::::::::2::a::::::::::::::::::4:::::2:::: R 4:::::::::::4:::::::::::::::::::::a:::::::a:::::::::::::: S :264264:4:2:2:8:::::::::::::::::a::::a:::::::::::::::::2: T 44:22::2::::::2::::::::::6:::::a:a::::::::::::::::::::::: V ::::::::::::::::::::::::::::::::::::6:4:::::::::::::::a:: W :44:::::::::::::::::::::::::::::::::::::::::::::::::::::: Y ::::::::::::::::::::::::::::::::::::::::6:::::::::::2:::: bits 6.9 6.2 5.5 * 4.8 * ** Relative 4.1 * * * * * ***** *** ** **** ** Entropy 3.4 ** * ******** ********** ********* **** ** * (198.1 bits) 2.8 ****** * ********************************************** 2.1 ********************************************************* 1.4 ********************************************************* 0.7 ********************************************************* 0.0 --------------------------------------------------------- Multilevel RTSMMSAQDGPGKGSLEEDLHAKLATLQDMFTSTRPVSILYLRGEEGDDPDLFPVKL consensus TWWSNGSASNAPRMTA D M M MLM A V G DDQ AH M sequence MS TS GGGAG SL F Q L Q S T T S Y -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------------------------------------------- AsnLSFL2 411 8.53e-65 PRPAKITKHK RTWSMGSQDGPGKMSLEDDLHAKLALMQDMFTSTRPVSILGLRGEEQDDPDLFPVML PESREFLKRE AsnLSFL1 420 8.53e-65 PRPAKITKHK RTWSMGSQDGPGKMSLEDDLHAKLALMQDMFTSTRPVSILGLRGEEQDDPDLFPVML PESREFLKRE MyfLSFL 569 3.10e-59 RPGKVPKHRR TWSMTSGTSNGGRGSAEEDLHMKLMTLQDMFTSTRPASVLYLRGEDGDDPDLQPVKL SGEIELVRTD MygLSFL 503 6.58e-56 RPAKVPKHRR TWSMNSAASNSGSGSAEEDMHMKLMTLQDMFTSTRPASILYLRGDDGDDPDAYPVKL TGETQDLLRN TrvLSFL 491 2.85e-53 AKQKHKRTWS MSSTSSAGGAAPRLTLEEDLHFKLQTLQDMFTSTRPVSVLYLRGEELDDPDLHPVSL QGEALPGKAD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AsnLSFL2 8.5e-65 410_[8]_226 AsnLSFL1 8.5e-65 419_[8]_203 MyfLSFL 3.1e-59 568_[8]_251 MygLSFL 6.6e-56 502_[8]_256 TrvLSFL 2.9e-53 490_[8]_221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=57 seqs=5 AsnLSFL2 ( 411) RTWSMGSQDGPGKMSLEDDLHAKLALMQDMFTSTRPVSILGLRGEEQDDPDLFPVML 1 AsnLSFL1 ( 420) RTWSMGSQDGPGKMSLEDDLHAKLALMQDMFTSTRPVSILGLRGEEQDDPDLFPVML 1 MyfLSFL ( 569) TWSMTSGTSNGGRGSAEEDLHMKLMTLQDMFTSTRPASVLYLRGEDGDDPDLQPVKL 1 MygLSFL ( 503) TWSMNSAASNSGSGSAEEDMHMKLMTLQDMFTSTRPASILYLRGDDGDDPDAYPVKL 1 TrvLSFL ( 491) MSSTSSAGGAAPRLTLEEDLHFKLQTLQDMFTSTRPVSVLYLRGEELDDPDLHPVSL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 57 n= 15234 bayes= 11.8242 E= 1.5e-084 -109 -134 -212 -126 -200 -215 -154 -136 -4 -148 218 -130 -289 -117 237 -119 230 -105 -173 -197 -106 -109 -271 -250 -222 -228 -256 -188 -199 -230 -145 -153 -327 -242 -210 85 279 -144 444 -227 -119 -151 -311 -311 -162 -219 -271 -302 -262 -289 -250 -222 -362 -318 -267 243 -103 -249 509 -113 -78 -89 -259 -219 -213 -203 -241 -156 -178 -183 284 -151 -303 -228 -190 196 187 -123 -203 -234 -82 -114 -156 -108 -196 -182 -155 -142 -83 -163 291 114 -268 -134 -115 90 200 -107 -178 -193 -43 -106 -236 -285 -365 265 -304 -380 -288 -375 -304 -163 -330 -319 -295 231 -126 -255 -319 -359 275 -45 -327 -301 -318 137 -336 -309 -304 -304 -235 -250 -330 -323 -293 155 -142 -159 -283 -353 125 -123 -129 -52 -236 117 -119 -216 -47 -198 -130 -87 -240 229 -84 -110 106 -152 -196 -204 -141 -216 244 -88 -344 149 -144 -378 -136 -354 -301 24 -300 -178 -195 158 -152 -310 -307 -267 99 -169 -126 -183 -350 307 -214 -360 -191 -356 -288 227 -325 -243 -225 -158 -193 -274 -289 -308 121 -122 -265 -227 -314 114 -274 -305 -217 -283 -245 -225 286 -249 -233 45 -165 -213 -296 -335 -167 -254 -265 -312 -409 393 -341 -422 -298 -442 -348 -222 -29 -389 -287 -271 -336 -354 -289 -379 -188 -250 -259 -145 -357 -253 -148 -296 278 -257 -201 -157 -335 -94 275 22 -200 -257 -227 -264 -122 -104 -336 -262 -84 227 -256 -22 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-428 -316 -123 -216 -277 218 -83 -176 -80 -160 -157 -160 -104 -65 -108 323 -140 -263 113 -94 -135 -109 -65 -157 -175 -157 -130 -358 -311 -142 -292 -303 -58 -257 191 -45 -241 -374 -296 -258 -159 292 -57 -195 -234 -293 -215 -528 -433 -76 -449 -391 -35 -405 300 339 -445 -449 -371 -357 -451 -309 -96 -188 -262 -247 -252 -357 -119 -381 -373 -62 -353 -252 -256 -156 -245 -356 389 -191 -334 -307 -330 -230 -369 -303 -308 390 -90 -390 -326 -287 -394 -363 -406 -360 -87 -477 -373 -357 -357 -374 -359 -316 -357 -418 -298 -532 -522 -357 -480 -492 -245 -473 -180 538 -490 -534 -518 -506 -503 -434 -292 -248 -325 -318 -182 -447 -427 459 -414 -381 -223 -429 -134 -180 -418 -431 -477 -426 -375 -406 -241 -102 -39 -201 -171 -358 -373 -339 -315 -350 -257 -303 -338 -221 -211 -399 -333 -299 -98 373 -210 -294 -370 -142 -143 -333 -366 -341 -251 -351 -372 -307 -369 -297 -201 -363 -371 -295 309 13 -332 -301 -337 -201 -171 -358 -373 -339 -315 -350 -257 -303 -338 -221 -211 -399 -333 -299 -98 373 -210 -294 -370 -325 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-394 -534 -477 -369 -554 -323 -457 -493 -463 -474 -485 -537 -195 -454 203 339 -487 -285 -287 -398 -167 -380 -321 -195 -349 -134 -276 -299 -281 -321 -428 -411 -90 -156 -153 -73 -207 235 -132 -169 -45 62 -110 -110 -272 225 -75 -164 -141 -137 -183 -195 -303 -308 390 -90 -390 -326 -287 -394 -363 -406 -360 -87 -477 -373 -357 -357 -374 -359 -316 -357 -303 -308 390 -90 -390 -326 -287 -394 -363 -406 -360 -87 -477 -373 -357 -357 -374 -359 -316 -357 -162 -263 -325 -292 -352 -291 -323 -350 -271 -313 -313 -327 379 -306 -283 -271 -267 -295 -339 -393 -303 -308 390 -90 -390 -326 -287 -394 -363 -406 -360 -87 -477 -373 -357 -357 -374 -359 -316 -357 22 -175 -439 -348 -112 -348 -339 -54 -325 326 17 -365 -386 -319 -289 -341 -256 -85 -197 -255 -176 -136 -285 -244 286 -287 202 -203 -236 -163 -140 -221 -330 53 -210 -245 -246 -183 36 340 -162 -263 -325 -292 -352 -291 -323 -350 -271 -313 -313 -327 379 -306 -283 -271 -267 -295 -339 -393 -111 -119 -389 -345 -249 -351 -347 19 -348 -159 -159 -371 -383 -402 -312 -364 -188 382 -307 -364 -90 -167 -152 -62 -219 -179 -114 -175 237 -164 326 -95 -260 -69 15 48 -109 -136 -175 -182 -300 -227 -484 -399 -123 -419 -374 -76 -374 346 4 -420 -423 -355 -327 -428 -316 -123 -216 -277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 57 nsites= 5 E= 1.5e-084 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.400000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.400000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 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Motif 8 regular expression -------------------------------------------------------------------------------- [RTM][TWS][SW][MST][MNST][SG][ASG][QAGT][DSG][GNA][PAGS][GP][KRS][GML][ST][LA]E[ED]D[LM]H[AMF]KL[AMQ][TL][LM]QDMFTSTRP[VA]S[IV]L[YG]LRG[ED][ED][GQL]DDPD[LA][FHQY]PV[KMS]L -------------------------------------------------------------------------------- Time 2031.07 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 21 sites = 18 llr = 593 E-value = 3.3e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A :1:1:2::1:1:::::::::: pos.-specific C :::::::::::::3:::1:1: probability D :::2::17:9:1:::1:12:: matrix E :::2:::3::1:::1::12:: F ::::::3::::::::::1::: G ::4:::::::11:::7:121: H 111:::::::::::::::1:: I :::1:41:6:3:::::33:22 K ::2:1::::::3::1:::11: L ::1::25:1:1:3:::41:1: M :::::1::1:::2:::::::: N 312::::1::::2::2::212 P :6:::::::::4::::::111 Q ::14::::::::::2::11:1 R 4:::9:::::211::::::12 S 211:::::::::271::1::2 T 11::::::::1:::1::::1: V :1:::11:1121::3:22:31 W :::1::::::::::::::::: Y :1::::::::::::2::1::: bits 6.9 6.2 5.5 4.8 Relative 4.1 * Entropy 3.4 * * * * (47.5 bits) 2.8 * *** * ** 2.1 ********** *** ** 1.4 ********************* 0.7 ********************* 0.0 --------------------- Multilevel RPGQRILDIDIPLSVGLIDVI consensus N ND AFE KNCYNI EIR sequence E L S V -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- LogLSF 167 1.45e-22 KQQIETWKQN RPGERILDIDIPLSYGLIDVN LDPIKLNEAE CapLSF 165 1.33e-20 SEQITTWKHN RPGDRILDIDIPLSYGLLDVN VDPNSLNSID BrfLSF 135 3.76e-19 YEQLAQWRSI RPNERLLDIDIPLSVNIYDIR KDPTAVNKVE HosLBP1a 141 2.25e-18 HQQLEGWKWN RPGDRLLDLDIPMSVGIIDTR TNPSQLNAVE DapLSF 178 6.26e-18 REQIAAWRMS RPGDRIVEIDVPLSYGIYEVV QDNSNLNVVE CiiLSF 133 5.27e-17 YEQFQNWKFN RPGDRLLNIDIPMSVGVIQPR EHPEQLNLVE Drmgemini 472 1.03e-16 REQMQQWQQS RPGERIIEVDVPLSYGLCHVS QPLSSGSLNT TraGRH 30 2.42e-16 HWQYWYSQQP NPNQRAFDIDRKSCQNVEERI EEIAYNAVAF NevLSF 179 5.01e-16 AEKFEEWRNN HPLERIFEIDVPMSTGLQNIR SKGNLTNAYE NevGRH1 88 8.30e-16 HWNYWHSQQP NPQQRAFDIDRKSCQNIDENI TDQAYNAAGF AmqGRH 344 1.66e-15 HWQYWYELQA NPNQKAFDIDRKNCEGLIEKP LDLGYNAASF DrmGRHA 710 5.19e-15 AWQFWHSRQH SVKQRILDADTKNSVGLVGCI EEVSHNAIAV DapGRH 194 1.08e-14 AWQFWHGRQH SAKQRILDADTKNSSGLIGCI EEVAHNAICI LogGRH 589 3.14e-14 AFEFWHSRQH SYKQRLLDIDIKNSQGIGPGS IEERAFNAVV MnlGRH 47 2.60e-12 YWQYWYTQQP NSNIRVFDVDERSCKNVVGIN EIGCNAVSFT PhbLSFL2 440 1.70e-11 WKFWMSQQRA THHARAVEIDLDRSVGIVKVQ VSDFDRVSFE AmqLSF 64 3.64e-11 ETQIQQWMND NNGQRMLEMVAVSCSGVSNIQ HHDDFINFAS NevLSF 4 2.63e-10 MAG NTSWRMDDLDGGLSTDLFNLS GLGNELSTNP -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- LogLSF 1.4e-22 166_[9]_365 CapLSF 1.3e-20 164_[9]_508 BrfLSF 3.8e-19 134_[9]_315 HosLBP1a 2.3e-18 140_[9]_379 DapLSF 6.3e-18 177_[9]_339 CiiLSF 5.3e-17 132_[9]_338 Drmgemini 1e-16 471_[9]_440 TraGRH 2.4e-16 29_[9]_262 NevLSF 2.6e-10 3_[9]_154_[9]_328 NevGRH1 8.3e-16 87_[9]_89 AmqGRH 1.7e-15 343_[9]_299 DrmGRHA 5.2e-15 709_[9]_333 DapGRH 1.1e-14 193_[9]_83 LogGRH 3.1e-14 588_[9]_272 MnlGRH 2.6e-12 46_[9]_450 PhbLSFL2 1.7e-11 439_[9]_358 AmqLSF 3.6e-11 63_[9]_344 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=21 seqs=18 LogLSF ( 167) RPGERILDIDIPLSYGLIDVN 1 CapLSF ( 165) RPGDRILDIDIPLSYGLLDVN 1 BrfLSF ( 135) RPNERLLDIDIPLSVNIYDIR 1 HosLBP1a ( 141) RPGDRLLDLDIPMSVGIIDTR 1 DapLSF ( 178) RPGDRIVEIDVPLSYGIYEVV 1 CiiLSF ( 133) RPGDRLLNIDIPMSVGVIQPR 1 Drmgemini ( 472) RPGERIIEVDVPLSYGLCHVS 1 TraGRH ( 30) NPNQRAFDIDRKSCQNVEERI 1 NevLSF ( 179) HPLERIFEIDVPMSTGLQNIR 1 NevGRH1 ( 88) NPQQRAFDIDRKSCQNIDENI 1 AmqGRH ( 344) NPNQKAFDIDRKNCEGLIEKP 1 DrmGRHA ( 710) SVKQRILDADTKNSVGLVGCI 1 DapGRH ( 194) SAKQRILDADTKNSSGLIGCI 1 LogGRH ( 589) SYKQRLLDIDIKNSQGIGPGS 1 MnlGRH ( 47) NSNIRVFDVDERSCKNVVGIN 1 PhbLSFL2 ( 440) THHARAVEIDLDRSVGIVKVQ 1 AmqLSF ( 64) NNGQRMLEMVAVSCSGVSNIQ 1 NevLSF ( 4) NTSWRMDDLDGGLSTDLFNLS 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 16278 bayes= 9.95356 E= 3.3e-060 -305 -383 -175 -240 -477 -255 76 -494 -176 -458 -405 267 -438 -274 285 70 -19 -441 -419 -387 -42 -294 -341 -299 -374 -324 11 -360 -278 -327 -321 -45 341 -314 -296 -114 -67 -60 -377 1 -190 -309 -176 -139 -353 249 69 -351 148 -60 -251 198 -348 8 -141 -61 -212 -296 -305 -292 -19 -415 175 201 -438 -323 -285 -20 -170 -371 -304 -243 -379 251 -242 -300 -277 -331 238 -379 -340 -233 -458 -441 -449 -383 -238 -401 -73 -381 -362 -332 -401 -282 425 -416 -390 -452 -233 -406 157 -240 -582 -500 -233 -464 -457 274 -470 151 221 -472 -533 -481 -449 -455 -317 45 -303 -343 -316 -256 -42 -486 263 -473 -444 30 -458 272 -91 -475 -515 -450 -424 -464 -335 93 -282 -332 -310 -373 363 148 -453 -330 -314 -445 -321 -449 -399 -9 -471 -313 -372 -355 -372 -399 -385 -406 -91 -251 -423 -403 -239 -420 -439 360 -360 17 32 -371 -485 -425 -384 -397 -282 126 -290 -301 -321 -326 390 -107 -407 -350 -306 -406 -387 -423 -375 -103 -502 -396 -378 -378 -395 -181 -335 -375 -10 -137 -398 -30 -166 -20 -292 241 -282 -2 -75 -302 -390 -312 147 -292 67 152 -185 -215 -202 -316 -39 -224 -388 -34 -274 -369 214 -333 -297 -253 291 -233 16 -281 -267 -38 -349 -367 -195 -202 -302 -242 -234 -299 -264 -166 -159 189 264 193 -393 -247 26 96 -220 -145 -239 -260 -207 436 -608 -619 -569 -328 -594 -591 -625 -583 -515 -505 -522 -588 -563 285 -360 -430 -518 -594 -138 -252 -178 23 -281 -232 -172 -263 38 -245 -179 -142 -305 130 -117 10 63 188 -247 234 -258 -344 -38 -313 -479 376 -330 -509 -323 -520 -436 159 -458 -392 -344 -300 -361 -447 -374 -422 -402 -314 -715 -659 -318 -637 -682 259 -647 244 -208 -640 -677 -660 -648 -657 -422 203 -463 -499 -169 181 -40 -32 54 -23 -282 222 -274 -3 -76 -296 -388 -25 -273 -85 -191 150 -184 151 -194 -323 171 176 -365 133 69 -366 22 -334 -266 163 -38 7 -184 -224 -219 -308 -323 -303 -160 270 -386 -303 -172 -27 -290 184 -23 -9 -82 -8 -52 -309 -3 -292 -15 228 -191 -222 -144 -244 -191 -110 -276 -240 -180 163 -79 -236 -173 150 -43 83 192 56 -173 -8 -246 -244 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 18 E= 3.3e-060 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.388889 0.166667 0.055556 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.055556 0.611111 0.000000 0.000000 0.055556 0.055556 0.055556 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.388889 0.055556 0.000000 0.166667 0.055556 0.000000 0.222222 0.000000 0.055556 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.222222 0.222222 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.388889 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.944444 0.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.388889 0.000000 0.222222 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.277778 0.000000 0.000000 0.055556 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 0.666667 0.277778 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.611111 0.000000 0.111111 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 0.000000 0.944444 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.055556 0.000000 0.000000 0.055556 0.000000 0.055556 0.000000 0.333333 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.111111 0.166667 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.055556 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.444444 0.000000 0.055556 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.166667 0.222222 0.000000 0.000000 0.055556 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.111111 0.111111 0.277778 0.000000 0.222222 0.000000 0.000000 0.055556 0.000000 0.000000 0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.444444 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.000000 0.055556 0.055556 0.055556 0.055556 0.055556 0.000000 0.277778 0.000000 0.055556 0.000000 0.000000 0.000000 0.055556 0.000000 0.055556 0.000000 0.166667 0.000000 0.111111 0.000000 0.000000 0.222222 0.222222 0.000000 0.166667 0.055556 0.000000 0.055556 0.000000 0.000000 0.166667 0.055556 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 0.055556 0.000000 0.222222 0.055556 0.055556 0.000000 0.055556 0.055556 0.000000 0.055556 0.000000 0.055556 0.277778 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.000000 0.166667 0.055556 0.111111 0.222222 0.166667 0.000000 0.055556 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- [RN]P[GN][QDE]R[IAL][LF][DE]IDI[PK][LNS][SC][VY][GN][LIV]I[DE][VI][IR] -------------------------------------------------------------------------------- Time 2220.87 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 41 sites = 5 llr = 496 E-value = 7.2e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::::a::::::::2:4:::2:::a::::2:::42::::::: pos.-specific C ::::::::::::::::::::::::8:::::::::::2:::: probability D :::4::4:a::::::::::::::::::::::::4:::66:: matrix E :::6::::::::::::a:::::::::::::::::2::::2: F :4:::::::::::::::::::::::a2::4::::::::::2 G a:::::6:::2::::::::::::::::::::2:4::2:::: H :::::::::4::::::::::::::::::::::::::::::: I ::a::::4::::::::::::::4::::2:::2::::::::: K ::::::::::::::::::::a:::::::::::2:2::22:: L :::::2::::::::::::::::::::::::::::::::::: M :::::2::::::::::::::::::::::::::::::::::: N ::::::::::::::::::::::::::::::::4:::::22: P :::::::::6:::8a6::a::a:::::::44:::::22::: Q ::::::::::::2:::::::::::::::4:::::6:::::: R ::::::::::::8::::a::::::::::4:44:::4::::: S ::::::::::4:::::::::::::2:::::2::::24:::: T ::::::::::4::::::::::::::::::::::::4::::: V :::::6:6:::::::::::8::6::::8:::2::::::::: W :6::::::::::::::::::::::::::::::::::::::: Y :::::::::::a::::::::::::::8::2:::::::::68 bits 6.9 6.2 5.5 4.8 * * ** Relative 4.1 *** * * * * *** ** **** * Entropy 3.4 ***** **** **** ************ ** (143.3 bits) 2.8 ********** ******************** **** **** 2.1 ***************************************** 1.4 ***************************************** 0.7 ***************************************** 0.0 ----------------------------------------- Multilevel GWIEAVGVDPSYRPPPERPVKPVACFYVQFPRADQRSDDYY consensus F D LDI HT QA A A I S FIRPRGNGETCKKEF sequence M G AYSIKAKSGPNN V P -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------------- AsnLSFL2 565 3.23e-45 VASTDGGAPM GFIDAVDIDPTYRPPAERPVKPIACFYVRFPRNDQRSDDYY RAVYLTERTV AsnLSFL1 574 3.23e-45 VASTDGGAPM GFIDAVDIDPTYRPPAERPVKPIACFYVRFPRNDQRSDDYY RAVYLTERTV MyfLSFL 730 3.69e-45 TRTSDDGTSA GWIEAVGVDHSYRPPPERPVKPVACFFIQPRVAGKTCDNYY RAIYLMKRSL TrvLSFL 629 1.07e-38 SKTEEDGTLS GWIEALGVDPSYRPPPERPAKPVACFYVAYSGKAESGKKEY HRAIYLSSRT MygLSFL 668 1.55e-37 IKSPTSGELS GWIEAMGVDHGYQAPPERPVKPVASFYVQPRIAGQTPPDNF HRAVYLMNRT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AsnLSFL2 3.2e-45 564_[10]_88 AsnLSFL1 3.2e-45 573_[10]_65 MyfLSFL 3.7e-45 729_[10]_106 TrvLSFL 1.1e-38 628_[10]_99 MygLSFL 1.6e-37 667_[10]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=41 seqs=5 AsnLSFL2 ( 565) GFIDAVDIDPTYRPPAERPVKPIACFYVRFPRNDQRSDDYY 1 AsnLSFL1 ( 574) GFIDAVDIDPTYRPPAERPVKPIACFYVRFPRNDQRSDDYY 1 MyfLSFL ( 730) GWIEAVGVDHSYRPPPERPVKPVACFFIQPRVAGKTCDNYY 1 TrvLSFL ( 629) GWIEALGVDPSYRPPPERPAKPVACFYVAYSGKAESGKKEY 1 MygLSFL ( 668) GWIEAMGVDHGYQAPPERPVKPVASFYVQPRIAGQTPPDNF 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 41 n= 15698 bayes= 11.8675 E= 7.2e-058 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 -378 -262 -432 -418 194 -389 -260 -335 -389 -213 -243 -365 -476 -388 -337 -436 -394 -309 646 7 -270 -220 -426 -405 -218 -406 -436 378 -364 -33 -59 -376 -475 -427 -385 -399 -273 96 -283 -293 -195 -454 203 339 -487 -285 -287 -398 -167 -380 -321 -195 -349 -134 -276 -299 -281 -321 -428 -411 363 -49 -374 -326 -300 -143 -367 -276 -331 -278 -218 -323 -402 -368 -314 -132 -201 -129 -267 -351 -148 -119 -427 -360 -118 -352 -334 49 -343 119 239 -357 -396 -362 -315 -349 -192 319 -199 -250 -183 -266 160 -201 -404 364 -265 -430 -248 -434 -358 -109 -382 -307 -272 -233 -286 -365 -305 -351 -177 -141 -438 -396 -227 -405 -418 276 -383 -83 -99 -394 -445 -440 -376 -405 -219 314 -320 -338 -303 -308 390 -90 -390 -326 -287 -394 -363 -406 -360 -87 -477 -373 -357 -357 -374 -359 -316 -357 -150 -246 -271 -246 -296 -265 271 -330 -222 -294 -286 -248 334 -265 -238 -246 -244 -276 -290 -284 -86 -100 -266 -286 -305 56 -291 -292 -241 -315 -222 -143 -322 -290 -242 228 221 -238 -269 -310 -350 -268 -436 -427 18 -385 -170 -336 -396 -281 -281 -360 -457 -407 -356 -407 -397 -325 -36 477 -304 -216 -410 -357 -421 -348 -209 -371 -72 -346 -321 -289 -377 -77 417 -374 -344 -403 -214 -368 45 -211 -281 -241 -312 -246 -281 -300 -222 -266 -261 -280 359 -256 -237 -213 -212 -241 -314 -360 -162 -263 -325 -292 -352 -291 -323 -350 -271 -313 -313 -327 379 -306 -283 -271 -267 -295 -339 -393 150 -179 -290 -248 -318 -220 -292 -305 -235 -276 -264 -278 339 -267 -247 -198 -203 -235 -314 -361 -461 -495 -220 401 -574 -479 -479 -516 -515 -580 -525 -418 -642 -400 -521 -565 -529 -519 -491 -564 -325 -220 -438 -420 -430 -363 -226 -388 -112 -366 -348 -317 -387 -268 425 -400 -374 -434 -220 -387 -162 -263 -325 -292 -352 -291 -323 -350 -271 -313 -313 -327 379 -306 -283 -271 -267 -295 -339 -393 23 -92 -357 -308 -238 -307 -312 23 -314 -159 -149 -336 -348 -365 -276 -311 -155 368 -283 -355 -330 -300 -465 -398 -495 -415 -380 -382 402 -433 -360 -340 -467 -390 -25 -457 -377 -425 -328 -442 -162 -263 -325 -292 -352 -291 -323 -350 -271 -313 -313 -327 379 -306 -283 -271 -267 -295 -339 -393 -177 -141 -438 -396 -227 -405 -418 276 -383 -83 -99 -394 -445 -440 -376 -405 -219 314 -320 -338 363 -49 -374 -326 -300 -143 -367 -276 -331 -278 -218 -323 -402 -368 -314 -132 -201 -129 -267 -351 -295 618 -520 -475 -443 -432 -488 -401 -510 -441 -367 -468 -540 -527 -451 -258 -370 -412 -456 -508 -318 -182 -447 -427 459 -414 -381 -223 -429 -134 -180 -418 -431 -477 -426 -375 -406 -241 -102 -39 -227 -169 -342 -305 242 -328 -49 -233 -292 -185 -171 -271 -372 -313 -259 -293 -293 -218 48 430 -110 -109 -392 -345 -235 -367 -351 140 -348 -132 -135 -370 -386 -403 -315 -373 -179 365 -309 -363 86 -210 -180 -70 -292 -208 -108 -256 49 -218 -154 -120 -282 234 263 -184 -155 -208 -202 -226 -261 -194 -382 -346 338 -354 -111 -235 -322 -184 -184 -297 197 -333 -294 -327 -312 -225 29 287 -96 -193 -201 -145 -290 -205 -191 -272 -68 -243 -206 -161 283 -158 217 11 -167 -217 -253 -275 -69 -67 -238 -154 -106 92 -167 145 -85 -52 -14 -167 -278 -159 239 -181 -101 159 -115 -139 194 -181 -77 -46 -259 -134 -109 -247 149 -223 -159 244 -254 -85 -40 -123 -119 -189 -210 -202 83 -199 196 -110 -356 308 -214 -364 -180 -357 -288 -69 -326 -224 -220 -174 -206 -285 -289 -307 -171 -251 -159 95 -349 -277 -74 -308 66 -239 -151 -168 -307 341 -84 -246 -219 -265 -226 -302 -112 -137 -206 -157 -274 -214 -191 -221 -66 -247 -156 -114 -301 -157 205 86 264 -172 -225 -257 -13 325 -276 -260 -306 140 -288 -297 -242 -296 -231 -189 123 -275 -249 195 -59 -203 -279 -311 -177 -271 334 -4 -336 -207 -186 -331 62 -314 -256 -49 34 -168 -171 -211 -215 -279 -282 -281 -242 -286 361 -68 -367 -223 -214 -378 0 -375 -325 77 -393 -259 -255 -246 -270 -336 -306 -313 -128 -149 -110 89 88 -178 -33 -213 -112 -184 -146 116 -283 -166 -140 -166 -173 -182 -33 375 -227 -169 -342 -305 242 -328 -49 -233 -292 -185 -171 -271 -372 -313 -259 -293 -293 -218 48 430 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 41 nsites= 5 E= 7.2e-058 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 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0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- G[WF]I[ED]A[VLM][GD][VI]D[PH][STG]Y[RQ][PA]P[PA]ERP[VA]KP[VI]A[CS]F[YF][VI][QRA][FPY][PRS][RGIV][ANK][DGA][QEK][RTS][SCGP][DKP][DKN][YEN][YF] -------------------------------------------------------------------------------- Time 2401.32 secs. ******************************************************************************** ******************************************************************************** MOTIF 11 width = 29 sites = 5 llr = 378 E-value = 3.6e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif 11 Description -------------------------------------------------------------------------------- Simplified A ::::::a::::::::a:::::2:::2:4: pos.-specific C :::::::::::::::::::::::::2::: probability D ::::::::::::::::::::8:::::::8 matrix E :::::a:::::::::::a::2:::::242 F ::::::::::::::::::::::::::::: G a:a:::::::aa::::::::::6:4642: H :::::::a:::::::::::::::2::::: I ::::::::::::::::::::::4:::4:: K ::::::::::::4:::::::::::::::: L :::::::::::::a::::::::::2:::: M ::::::::::::::::::::::::2:::: N ::::a:::::::::::::::::::::::: P :::::::::::::::::::::6::2:::: Q ::::::::a:::::a::::::::8::::: R :a:::::::a::6:::::::::::::::: S :::4:::::::::::::::::2::::::: T :::6::::::::::::::::::::::::: V ::::::::::::::::a::a::::::::: W ::::::::::::::::::::::::::::: Y ::::::::::::::::::a:::::::::: bits 6.9 6.2 5.5 4.8 * * Relative 4.1 *** ******** ****** Entropy 3.4 *** ***************** ** * * (109.0 bits) 2.8 ************************ **** 2.1 ***************************** 1.4 ***************************** 0.7 ***************************** 0.0 ----------------------------- Multilevel GRGTNEAHQRGGRLQAVEYVDPGQGGGAD consensus S K EAIHLAIEE sequence S MCEG P -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 11 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- MygLSFL 327 1.24e-35 PAACWQLWKE GRGTNEAHQRGGRLQAVEYVDPGQLCGAD DPGKPKLELE AsnLSFL2 232 2.01e-34 PAACWQLWKE GRGSNEAHQRGGKLQAVEYVDPIQGGIED TKNRQIQLES AsnLSFL1 241 2.01e-34 PAACWQLWKE GRGSNEAHQRGGKLQAVEYVDPIQGGIED TKNRQIQLES MyfLSFL 396 7.71e-32 PAACWQLWKE GRGTNEAHQRGGRLQAVEYVDSGHMGGAE DPTKPRVDLE TrvLSFL 315 4.32e-31 PGVCWSLWKE GRGTNEAHQRGGRLQAVEYVEAGQPAEGD DKRTRVDLES -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 11 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MygLSFL 1.2e-35 326_[11]_460 AsnLSFL2 2e-34 231_[11]_433 AsnLSFL1 2e-34 240_[11]_410 MyfLSFL 7.7e-32 395_[11]_452 TrvLSFL 4.3e-31 314_[11]_425 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 11 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 11 width=29 seqs=5 MygLSFL ( 327) GRGTNEAHQRGGRLQAVEYVDPGQLCGAD 1 AsnLSFL2 ( 232) GRGSNEAHQRGGKLQAVEYVDPIQGGIED 1 AsnLSFL1 ( 241) GRGSNEAHQRGGKLQAVEYVDPIQGGIED 1 MyfLSFL ( 396) GRGTNEAHQRGGRLQAVEYVDSGHMGGAE 1 TrvLSFL ( 315) GRGTNEAHQRGGRLQAVEYVEAGQPAEGD 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 11 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 16046 bayes= 11.8992 E= 3.6e-051 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 -325 -220 -438 -420 -430 -363 -226 -388 -112 -366 -348 -317 -387 -268 425 -400 -374 -434 -220 -387 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 -137 -115 -306 -325 -303 -267 -308 -242 -253 -310 -187 -151 -348 -292 -249 181 301 -197 -262 -328 -334 -259 -213 -370 -346 -299 -129 -315 -292 -383 -316 418 -408 -302 -316 -220 -261 -344 -252 -329 -461 -495 -220 401 -574 -479 -479 -516 -515 -580 -525 -418 -642 -400 -521 -565 -529 -519 -491 -564 363 -49 -374 -326 -300 -143 -367 -276 -331 -278 -218 -323 -402 -368 -314 -132 -201 -129 -267 -351 -347 -255 -299 -331 -229 -341 478 -418 -360 -323 -270 -139 -405 -145 -197 -326 -319 -362 -190 -87 -247 -252 -357 -119 -381 -373 -62 -353 -252 -256 -156 -245 -356 389 -191 -334 -307 -330 -230 -369 -325 -220 -438 -420 -430 -363 -226 -388 -112 -366 -348 -317 -387 -268 425 -400 -374 -434 -220 -387 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 -253 -248 -359 -228 -409 -305 -174 -334 229 -295 -249 -218 -372 -134 363 -311 -264 -315 -229 -311 -300 -227 -484 -399 -123 -419 -374 -76 -374 346 4 -420 -423 -355 -327 -428 -316 -123 -216 -277 -247 -252 -357 -119 -381 -373 -62 -353 -252 -256 -156 -245 -356 389 -191 -334 -307 -330 -230 -369 363 -49 -374 -326 -300 -143 -367 -276 -331 -278 -218 -323 -402 -368 -314 -132 -201 -129 -267 -351 -111 -119 -389 -345 -249 -351 -347 19 -348 -159 -159 -371 -383 -402 -312 -364 -188 382 -307 -364 -461 -495 -220 401 -574 -479 -479 -516 -515 -580 -525 -418 -642 -400 -521 -565 -529 -519 -491 -564 -350 -268 -436 -427 18 -385 -170 -336 -396 -281 -281 -360 -457 -407 -356 -407 -397 -325 -36 477 -111 -119 -389 -345 -249 -351 -347 19 -348 -159 -159 -371 -383 -402 -312 -364 -188 382 -307 -364 -284 -305 384 -6 -385 -316 -276 -383 -331 -395 -346 -78 -461 -333 -341 -342 -357 -346 -313 -350 63 -185 -279 -239 -312 -223 -280 -301 -223 -269 -257 -268 342 -256 -237 -10 -199 -234 -310 -356 -142 -180 -299 -314 -276 353 -334 191 -292 -221 -198 -246 -393 -362 -288 -259 -258 -121 -262 -307 -229 -237 -344 -98 -367 -370 35 -334 -233 -235 -133 -223 -339 382 -170 -316 -288 -312 -212 -354 -71 -81 -232 -161 -107 233 -186 -40 -137 103 222 -172 104 -181 -152 -179 -116 -23 -124 -147 88 265 -299 -332 -379 364 -352 -377 -319 -391 -308 -241 -364 -375 -299 -191 -235 -268 -293 -378 -93 -146 -129 116 -198 265 -184 197 -102 -145 -103 -123 -287 -150 -139 -179 -147 -78 -190 -204 224 -147 -73 231 -303 128 -193 -277 -98 -260 -195 -121 -276 -119 -154 -144 -152 -184 -265 -271 -284 -305 384 -6 -385 -316 -276 -383 -331 -395 -346 -78 -461 -333 -341 -342 -357 -346 -313 -350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 11 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 5 E= 3.6e-051 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 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0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.200000 0.200000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.200000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.400000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.400000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 11 regular expression -------------------------------------------------------------------------------- GRG[TS]NEAHQRGG[RK]LQAVEYV[DE][PAS][GI][QH][GLMP][GAC][GIE][AEG][DE] -------------------------------------------------------------------------------- Time 2582.42 secs. ******************************************************************************** ******************************************************************************** MOTIF 12 width = 31 sites = 8 llr = 495 E-value = 3.7e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif 12 Description -------------------------------------------------------------------------------- Simplified A 1:111::483::6::::::::::546::::: pos.-specific C ::::::::::::::::::::::::::::::: probability D 35:431:::8:8:::::::313::::::::1 matrix E 3::5::::::::::::::::9:::::::::6 F ::::::::::8:::::::::::::::::::: G :1::15::::::4:::8:a:::6:1::3::: H ::::::::1::::::::::1::::::::::: I ::5:::::::::::::31::::::::::::: K ::::::::1::1::::::::::::::::::: L ::3:::a:::::::9::6:1:8::::3:33: M ::1::::::::::31:::::::::::::8:: N ::::31:::::::1:1:3::::::1::6::: P :::::3::::::::::::::::::::::::: Q :::::::::::::::::::1::::::::::: R ::::::::::::::::::::::::::::::: S 3:::3::::::::6:9::::::4333:1:8: T :::::::4::31:::::::1:::111::::: V :1:::::3:::::::::::3:::1::::::: W 1:::::::::::::::::::::::::::::: Y :3::::::::::::::::::::::::8:::3 bits 6.9 6.2 5.5 4.8 Relative 4.1 * * * Entropy 3.4 * ** * * * * * * (89.3 bits) 2.8 *** ************* *** ****** 2.1 ******************* *********** 1.4 ******************************* 0.7 ******************************* 0.0 ------------------------------- Multilevel DDIEDGLAADFDASLSGLGDELGAAAYNMSE consensus EYLDNP T AT GM IN V DSSSSLGLLY sequence S S V -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------- LogLSF 46 2.88e-31 SHTNSSSLSA WDIDAGLAADFDGSLSGLGTELGTSSYNMSE ALLALPVFKQ CapLSF 52 3.69e-31 LSQWLANIKT DDIDGGLAADFDGSLSGLGVELGSSTYNMSE ALLALPVFKQ BrfLSF 14 5.01e-30 ARTSDSLDAA ADAADGLTADFDASLSGLGHELGSTAYNMSE VLALPIFKQE DapLSF 49 3.05e-28 INNRVAGWRL EDIDDNLAADFDGSLSGLGVDLSVASYNMSE ALLALPTLTG CiiLSF 7 3.38e-28 VAWVKM DGMESDLVKDFDANLSGLGLELGANAYNMSE VLNLPIFKQE HosLBP1a 9 1.03e-27 MAWVLKMD EVIESGLVHDFDASLSGIGQELGAGAYSMSD VLALPIFKQE HosGRHL2 22 1.01e-20 AYTSEDEAWK SYLENPLTAATKAMMSINGDEDSAAALGLLY DYYKVPRDKR BrfGRH 36 2.26e-20 SSRDEDEAWR SYLENPLTAATTAMLNINGDEDSAAALGLLY DYYKVPKEKR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- LogLSF 2.9e-31 45_[12]_476 CapLSF 3.7e-31 51_[12]_611 BrfLSF 5e-30 13_[12]_426 DapLSF 3.1e-28 48_[12]_458 CiiLSF 3.4e-28 6_[12]_454 HosLBP1a 1e-27 8_[12]_501 HosGRHL2 1e-20 21_[12]_557 BrfGRH 2.3e-20 35_[12]_535 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 12 width=31 seqs=8 LogLSF ( 46) WDIDAGLAADFDGSLSGLGTELGTSSYNMSE 1 CapLSF ( 52) DDIDGGLAADFDGSLSGLGVELGSSTYNMSE 1 BrfLSF ( 14) ADAADGLTADFDASLSGLGHELGSTAYNMSE 1 DapLSF ( 49) EDIDDNLAADFDGSLSGLGVDLSVASYNMSE 1 CiiLSF ( 7) DGMESDLVKDFDANLSGLGLELGANAYNMSE 1 HosLBP1a ( 9) EVIESGLVHDFDASLSGIGQELGAGAYSMSD 1 HosGRHL2 ( 22) SYLENPLTAATKAMMSINGDEDSAAALGLLY 1 BrfGRH ( 36) SYLENPLTAATTAMLNINGDEDSAAALGLLY 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 31 n= 15988 bayes= 10.964 E= 3.7e-048 66 -231 163 181 -266 -174 -129 -258 -37 -228 -160 -75 -257 -80 -87 86 -128 -199 308 -211 -181 -225 313 -100 -210 41 -194 -253 -178 -262 -215 -70 -355 -220 -216 -217 -215 37 -220 206 -11 -187 -433 -387 -159 -379 -379 331 -349 116 159 -358 -445 -385 -350 -363 -242 65 -223 -255 61 -508 236 300 -518 -296 -299 -409 -158 -381 -321 -222 -343 -125 -276 -302 -281 -321 -464 -429 68 -282 191 -137 -379 101 -167 -421 -158 -391 -338 225 -337 -203 -218 113 -198 -361 -344 -295 -215 -294 79 -187 -413 324 -213 -458 -216 -446 -386 117 126 -267 -266 -201 -250 -398 -346 -335 -354 -277 -531 -454 -171 -461 -424 -128 -429 353 -45 -472 -469 -407 -379 -482 -370 -177 -263 -329 235 -109 -432 -381 -287 -204 -384 -150 -367 -234 -193 -325 -379 -377 -347 -184 233 193 -296 -343 333 -56 -276 -212 -279 -147 68 -257 27 -247 -184 -224 -392 -237 -149 -129 -190 -118 -240 -298 46 -285 374 -93 -404 -286 -291 -406 -332 -415 -366 -100 -450 -342 -350 -309 -333 -354 -338 -369 -290 -214 -468 -453 437 -389 -338 -234 -439 -170 -203 -406 -460 -465 -423 -373 105 -241 -115 -44 -278 -306 377 -76 -388 -287 -261 -390 -78 -397 -347 -72 -445 -314 -304 -310 -103 -352 -320 -346 315 -110 -440 -425 -407 251 -439 -404 -437 -400 -329 -349 -389 -427 -397 -177 -219 -243 -366 -448 -126 -137 -219 -244 -298 -215 -264 -296 -207 -299 235 64 -337 -272 -223 262 16 -262 -273 -286 -309 -233 -502 -404 -120 -448 -383 -75 -381 338 167 -430 -431 -355 -331 -438 -320 -128 -220 -290 -149 -135 -245 -311 -327 -240 -301 -358 -262 -356 -276 34 -348 -330 -263 293 51 -341 -292 -315 -189 -263 -305 -350 -396 385 -373 97 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437 -219 -257 -99 -215 -398 160 -174 -416 -231 -434 -381 364 -372 -267 -288 8 -229 -381 -339 -333 -406 -296 -579 -550 -209 -513 -500 -154 -505 82 516 -524 -549 -506 -508 -537 -422 -220 -245 -324 -144 -164 -380 -385 -285 -261 -374 -265 -330 124 -227 -262 -397 -386 -323 280 -71 -244 -297 -314 -201 -454 102 330 -426 -282 -280 -408 -165 -382 -323 -190 -353 -143 -269 -291 -278 -329 -400 230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 31 nsites= 8 E= 3.7e-048 0.125000 0.000000 0.250000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.125000 0.000000 0.000000 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0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.625000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 regular expression -------------------------------------------------------------------------------- [DES][DY][IL][ED][DNS][GP]L[ATV]A[DA][FT]D[AG][SM]LS[GI][LN]G[DV]E[LD][GS][AS][AS][AS][YL][NG][ML][SL][EY] -------------------------------------------------------------------------------- Time 2761.01 secs. ******************************************************************************** ******************************************************************************** MOTIF 13 width = 41 sites = 4 llr = 406 E-value = 2.5e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif 13 Description -------------------------------------------------------------------------------- Simplified A ::5:::::3::::3:::::::3::5:::::a:::::::33: pos.-specific C ::::::::::::::::::::::::::::::::::::::::: probability D ::::::::::::::::::::::::::::::::a:::::::: matrix E ::::::::::::::::::::::::::::::::::::::::: F ::::5::5::::::::::::::::::::::::::::::33: G :::::::::::::8::::::a8:5:::::::a:::::5:53 H ::3:::::::::5::::::::::::::a::::::a:::::: I :::::::::::::::::::::::::3::::::::::::::: K ::::::::::::::::::::::::::::::::::::::::: L :::::::::5::::::::::::5::3:::::::a::::::: M ::::::5::::5::::::::::::::::::::::::::5:8 N 5a:3:5:5:5::::::::5::::5::::3::::::::3::: P 5:3:::::5:353::::a:5::::3:::::::::::a:::: Q ::::::::::8::::::::::::::::::a::::::::::: R ::::::::::::::::::::::::::::::::::::::::: S :::35:::::::3::::::5::3:::::8:::::::::::: T ::::::::3:::::::a:5:::3:3::::::::::a:3::: V :::5::5::::::::::::::::::5::::::::::::::: W ::::::::::::::::::::::::::::::::::::::::: Y :::::5::::::::aa::::::::::a:::::::::::::: bits 6.9 6.2 5.5 4.8 ** ** * Relative 4.1 * * **** * ** **** *** * Entropy 3.4 ** *** ** ****** ** * ** ******** * * (146.4 bits) 2.8 ********************** ****************** 2.1 ***************************************** 1.4 ***************************************** 0.7 ***************************************** 0.0 ----------------------------------------- Multilevel NNAVFNMFPLQMHGYYTPNPGGLGAVYHSQAGDLHTPGMGM consensus P HNSYVNANPPPA TS ASNPI N NAAG sequence PS T S T TL TFF -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 13 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------------------- AsnLSFL2 10 1.14e-48 MRFAAPFVD PNAVSYVNPLQPHGYYTPNSGGLGAVYHSQAGDLHTPGMGM SMITPLSLPQ AsnLSFL1 19 1.14e-48 DMRFAAPFVD PNAVSYVNPLQPHGYYTPNSGGLGAVYHSQAGDLHTPGMGM SMITPLSLPQ MygLSFL 93 2.71e-40 SGLTPSIMDP NNHSFNMFTNQMPGYYTPTPGGTNTIYHSQAGDLHTPNAFG GMGLGTPLSM MyfLSFL 163 4.65e-37 SGLTPSLMDP NNPNFNMFANPMSAYYTPTPGASNPLYHNQAGDLHTPTFAM GLGTPLSMPT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 13 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AsnLSFL2 1.1e-48 9_[13]_643 AsnLSFL1 1.1e-48 18_[13]_620 MygLSFL 2.7e-40 92_[13]_682 MyfLSFL 4.6e-37 162_[13]_673 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 13 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 13 width=41 seqs=4 AsnLSFL2 ( 10) PNAVSYVNPLQPHGYYTPNSGGLGAVYHSQAGDLHTPGMGM 1 AsnLSFL1 ( 19) PNAVSYVNPLQPHGYYTPNSGGLGAVYHSQAGDLHTPGMGM 1 MygLSFL ( 93) NNHSFNMFTNQMPGYYTPTPGGTNTIYHSQAGDLHTPNAFG 1 MyfLSFL ( 163) NNPNFNMFANPMSAYYTPTPGASNPLYHNQAGDLHTPTFAM 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 13 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 41 n= 15698 bayes= 10.1715 E= 2.5e-037 -130 -214 -124 -158 -305 -174 -184 -311 -159 -290 -264 268 288 -208 -195 -173 -187 -260 -281 -283 -324 -253 -204 -355 -338 -289 -122 -308 -281 -375 -309 417 -401 -294 -307 -212 -253 -337 -246 -320 222 -102 -158 -95 -209 -139 177 -202 -84 -191 -140 -120 202 -130 -115 -120 -122 -125 -197 -168 -36 -84 -153 -124 -170 -159 -160 -32 -109 -124 -84 141 -261 -161 -135 48 -55 274 -174 -185 -118 -123 -290 -272 363 -224 -204 -180 -249 -153 -145 -212 -333 -288 -254 163 -125 -158 -68 30 -215 -202 -154 -204 35 -212 -80 -260 -183 -228 -208 297 -348 -231 -205 -216 -226 -240 -10 353 -154 -107 -427 -351 -116 -333 -337 61 -323 -7 390 -343 -399 -352 -314 -329 -186 279 -193 -225 -214 -191 -191 -235 340 -234 -136 -212 -216 -184 -178 296 -359 -256 -237 -233 -228 -201 -38 56 87 -156 -254 -205 -283 -199 -254 -261 -191 -242 -219 -233 325 -227 -209 -167 68 -196 -279 -315 -155 -157 -179 -177 -132 -215 -171 -89 -139 223 -56 288 -320 -202 -163 -207 -172 -94 -163 -162 -205 -230 -291 -86 -354 -329 -48 -322 -195 -235 -138 -207 -35 374 -157 -289 -264 -294 -215 -338 -107 -170 -276 -216 -202 -239 -260 -159 -196 -130 343 -254 304 -242 -212 -217 -191 -143 -228 -251 -123 -168 -136 -121 -188 -183 380 -265 -114 -223 -166 -46 123 -78 -99 14 -145 -210 -161 -66 16 -213 -259 -301 -392 390 -332 -399 -288 -419 -326 -213 -386 -373 -276 -238 -297 -319 -278 -368 -289 -220 -384 -366 65 -344 -119 -283 -339 -233 -228 -312 -412 -358 -306 -352 -343 -270 1 468 -289 -220 -384 -366 65 -344 -119 -283 -339 -233 -228 -312 -412 -358 -306 -352 -343 -270 1 468 -173 -145 -328 -337 -311 -291 -322 -227 -271 -307 -192 -183 -373 -304 -270 -70 367 -181 -270 -341 -139 -242 -302 -267 -330 -271 -301 -327 -248 -290 -290 -304 375 -283 -260 -248 -244 -271 -320 -371 -143 -157 -111 -165 -287 -169 -164 -244 -148 -288 -199 284 -313 -198 -183 -71 263 -201 -247 -264 -69 -153 -239 -213 -301 -190 -260 -295 -203 -270 -245 -202 312 -242 -221 137 -138 -224 -289 -321 -177 -264 -268 -318 -409 402 -343 -425 -301 -445 -352 -227 -411 -395 -288 -281 -348 -361 -286 -378 16 -213 -259 -301 -392 390 -332 -399 -288 -419 -326 -213 -386 -373 -276 -238 -297 -319 -278 -368 -71 -78 -246 -183 -121 -202 -202 -49 -151 213 -19 -161 -276 -193 -163 81 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0.250000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.250000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 13 regular expression -------------------------------------------------------------------------------- [NP]N[AHP][VNS][FS][NY][MV][FN][PAT][LN][QP][MP][HPS][GA]YYTP[NT][PS]G[GA][LST][GN][APT][VIL]YH[SN]QAGDLHTP[GNT][MAF][GAF][MG] -------------------------------------------------------------------------------- Time 2934.76 secs. ******************************************************************************** ******************************************************************************** MOTIF 14 width = 20 sites = 8 llr = 345 E-value = 3.9e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif 14 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::1::::: pos.-specific C ::::::::1:5:::::3::: probability D 1:1::::::4:::::1:::3 matrix E 816::::::6:::::9:::5 F ::::1:::::1::::::::: G ::1::::::::::::::::: H 1::::::::::::::::::: I :1::::::::::5:::5::: K :5:9::::::::::1::::: L ::1:1:::::::39::::6: M ::::::1::::::1::11:: N ::::::::1:::::1::::: P ::::::9::::::::::511 Q :3:1:a::::::::::1::: R :::::::::::::::::1:: S :::::::a::1:::1::11: T ::::::::::1a::5::1:1 V ::::::::::::3:::::1: W :::::::::::::::::::: Y ::::8:::8:1::::::::: bits 6.9 6.2 5.5 4.8 Relative 4.1 * * * Entropy 3.4 * ********* * ** (62.1 bits) 2.8 * ************ ** 2.1 ******************** 1.4 ******************** 0.7 ******************** 0.0 -------------------- Multilevel EKEKYQPSYECTILTEIPLE consensus Q D L C D sequence V -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 14 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- LogLSF 282 5.07e-23 REKMDKRSES EKEKYQPSYECTVLTEIPVD TSISSLSMNS DapLSF 295 6.38e-23 REKIYKRPMV EQEKYQPSCECTILAEIPLE LVYTSAIVPV CapLSF 294 5.65e-22 FRPSCCLTLL HEEKYQPSYECTVLTEIPLE QVRTYLDHIR HosLBP1a 258 1.66e-21 REKMEKRTAH EKEKYQPSYDTTILTEMRLE PIIEDAVEHE Drmgemini 628 2.76e-18 REKIQKRPQS EQEKFQPSYECTIMNDISLD LVMSATTTGC BrfLSF 245 1.37e-17 TDREKMEKKP DKDKYQPSYEYTILTECTSP DASFNSPASS CiiLSF 250 9.51e-17 KDKMERRTAQ EKLKYQPSYDSTLLSECMPT LPSNEQLATM NevLSF 296 8.23e-14 LQKLESKSHD EIGQLQMSNDFTLLKEQPLE KKEKPLWTSP -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 14 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- LogLSF 5.1e-23 281_[14]_251 DapLSF 6.4e-23 294_[14]_223 CapLSF 5.7e-22 293_[14]_380 HosLBP1a 1.7e-21 257_[14]_263 Drmgemini 2.8e-18 627_[14]_285 BrfLSF 1.4e-17 244_[14]_206 CiiLSF 9.5e-17 249_[14]_222 NevLSF 8.2e-14 295_[14]_212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 14 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 14 width=20 seqs=8 LogLSF ( 282) EKEKYQPSYECTVLTEIPVD 1 DapLSF ( 295) EQEKYQPSCECTILAEIPLE 1 CapLSF ( 294) HEEKYQPSYECTVLTEIPLE 1 HosLBP1a ( 258) EKEKYQPSYDTTILTEMRLE 1 Drmgemini ( 628) EQEKFQPSYECTIMNDISLD 1 BrfLSF ( 245) DKDKYQPSYEYTILTECTSP 1 CiiLSF ( 250) EKLKYQPSYDSTLLSECMPT 1 NevLSF ( 296) EIGQLQMSNDFTLLKEQPLE 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 14 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 20 n= 16307 bayes= 10.9925 E= 3.9e-034 -353 -496 -56 390 -558 -411 -48 -489 -346 -514 -456 -333 -516 -291 -424 -453 -430 -454 -485 -520 -154 -270 -165 105 -328 -239 -156 67 280 -255 -192 -147 -313 173 -7 -212 -181 -239 -247 -255 -222 -447 64 350 -480 21 -303 -410 -188 -31 -332 -229 -378 -167 -281 -316 -297 -341 -427 -415 -320 -304 -444 -348 -490 -400 -336 -379 396 -409 -341 -316 -460 -104 -16 -428 -356 -405 -323 -421 -233 -184 -354 -314 203 -343 -68 -240 -305 24 -177 -293 -386 -334 -276 -305 -306 -228 11 428 -285 -286 -399 -160 -417 -405 -99 -392 -298 -293 -194 -285 -390 396 -231 -373 -346 -370 -264 -406 -135 -248 -306 -266 -328 -281 -304 -315 -245 -279 122 -307 366 -280 -260 -245 -241 -264 -334 -378 -218 -223 -423 -464 -425 -318 -435 -465 -406 -455 -390 -298 -439 -462 -386 323 -87 -413 -374 -421 -194 241 -296 -277 113 -296 -56 -232 -268 -198 -174 61 -360 -309 -250 -265 -271 -210 2 424 -202 -524 229 330 -534 -304 -311 -423 -173 -397 -337 -230 -355 -137 -293 -316 -295 -335 -478 -444 -132 495 -353 -284 140 -264 -210 -86 -259 -112 -71 -260 -357 -285 -250 -9 60 -65 -97 171 -283 -251 -441 -466 -421 -383 -430 -349 -395 -425 -311 -299 -471 -421 -385 -186 385 -300 -366 -449 -275 -222 -440 -415 -222 -426 -449 345 -375 87 -61 -385 -489 -436 -397 -408 -274 174 -293 -307 -309 -233 -502 -404 -120 -448 -383 -75 -381 338 167 -430 -431 -355 -331 -438 -320 -128 -220 -290 16 -161 -228 -197 -300 -267 -236 -235 34 -288 -173 58 -338 -206 -185 39 306 -188 -257 -299 -441 -501 -152 399 -576 -472 -471 -513 -477 -571 -514 -408 -618 -377 -508 -548 -513 -509 -495 -563 -140 353 -393 -312 -113 -288 -278 293 -271 -32 204 -288 -366 48 -260 -272 -161 25 -149 -181 -118 -225 -259 -203 -298 -254 -252 -276 -174 -253 123 -242 326 -223 34 -47 5 -226 -293 -322 -209 -163 -424 -332 -121 -345 -316 -61 -307 313 9 -342 -48 -306 -275 -97 -234 35 -188 -240 -177 -441 184 297 -462 -272 -266 -387 -141 -358 -296 -187 50 -121 -241 -272 57 -306 -414 -384 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 14 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 20 nsites= 8 E= 3.9e-034 0.000000 0.000000 0.125000 0.750000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.125000 0.500000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.625000 0.000000 0.125000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 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0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.125000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.125000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.500000 0.000000 0.125000 0.125000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.000000 0.125000 0.000000 0.000000 0.125000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 0.250000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 14 regular expression -------------------------------------------------------------------------------- E[KQ]EKYQPSY[ED]CT[ILV]LTE[IC]PL[ED] -------------------------------------------------------------------------------- Time 3106.05 secs. ******************************************************************************** ******************************************************************************** MOTIF 15 width = 15 sites = 14 llr = 376 E-value = 3.4e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif 15 Description -------------------------------------------------------------------------------- Simplified A :::::::::::::2: pos.-specific C :::::::2::::::: probability D :::::::::1:32:: matrix E 1:::::::18241:: F 1:::::::::::::2 G ::::::::::1:::: H ::::::::::::1:: I ::::4::::::::1: K 11:::::241::2:: L :1435:1:1:::::: M :1:11:::::::::: N ::::::::::1:::: P 5::::::::1:1::: Q ::::::::3:2111: R :5:::::41:::::: S 11:::::1::2111: T 1:16:::1::211:1 V ::5:::9::::::51 W ::::::::::::::: Y :1:::a::::::::6 bits 6.9 6.2 5.5 4.8 * Relative 4.1 * Entropy 3.4 ** * (38.8 bits) 2.8 ****** * * 2.1 ********** * ** 1.4 *************** 0.7 *************** 0.0 --------------- Multilevel PRVTLYVRKEEEDVY consensus LLI CQ QDKAF sequence K S T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 15 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- AmqGRH 573 1.99e-15 RNKSKRINTQ PMTTIYVRKEEEKVY NALSLRELTV LogLSF 457 3.44e-15 NNALQSRSVR PRLTIYVCQESESIY HAVYLEQMTV NvGRH2 65 1.59e-14 KAKRVVRRPP PLLTIYVRQETEKAY NAVFMEELTV HosGRHL2 520 1.80e-14 PSKQMKEEGT KRVLLYVRKETDDVF DALMLKSPTV CiiGRH 283 2.03e-14 CPKSSDIPED TRVLLYVRRETDDVY DGIMLCDPTL BrfLSF 380 2.59e-14 FNALQARAIR PRLTMYVCLESQHVY HAIFLENLCV DrmGRHA 970 4.15e-14 KRGRMTPPTS ERVMLYVRQENEEVY TPLHVVPPTT BrfGRH 507 5.23e-14 SPTPAAKVAN KSVLLYVRKEEDDVY DALMLREPSV TraGRH 221 6.30e-13 FTTVRYKNIF FSVTIYVKKEEETAY HALMLKNCTV MnlGRH 368 1.59e-11 PNKCPRIQRP SYVTIYVKKPGEKIY SALCLNKPTL HosLBP1a 428 1.59e-11 YNSLKSRSVR PRLTIYVCREQPSST VLQGQQQAAS DapLSF 443 1.03e-10 YNALHAKPLA PRLTLYLTQDQSQVF HAIFLENLSC LogGRH 788 6.80e-10 SKRVCRGPKE SKVLLYVKEKQDTAF TALMLKQPNV NevLSF 432 1.54e-09 HNALQSRAAR PLLTLYVSLESTQQV SGMKEYHAMF -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 15 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AmqGRH 2e-15 572_[15]_76 LogLSF 3.4e-15 456_[15]_81 NvGRH2 1.6e-14 64_[15]_78 HosGRHL2 1.8e-14 519_[15]_75 CiiGRH 2e-14 282_[15]_62 BrfLSF 2.6e-14 379_[15]_76 DrmGRHA 4.1e-14 969_[15]_79 BrfGRH 5.2e-14 506_[15]_80 TraGRH 6.3e-13 220_[15]_77 MnlGRH 1.6e-11 367_[15]_135 HosLBP1a 1.6e-11 427_[15]_98 DapLSF 1e-10 442_[15]_80 LogGRH 6.8e-10 787_[15]_79 NevLSF 1.5e-09 431_[15]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 15 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 15 width=15 seqs=14 AmqGRH ( 573) PMTTIYVRKEEEKVY 1 LogLSF ( 457) PRLTIYVCQESESIY 1 NvGRH2 ( 65) PLLTIYVRQETEKAY 1 HosGRHL2 ( 520) KRVLLYVRKETDDVF 1 CiiGRH ( 283) TRVLLYVRRETDDVY 1 BrfLSF ( 380) PRLTMYVCLESQHVY 1 DrmGRHA ( 970) ERVMLYVRQENEEVY 1 BrfGRH ( 507) KSVLLYVRKEEDDVY 1 TraGRH ( 221) FSVTIYVKKEEETAY 1 MnlGRH ( 368) SYVTIYVKKPGEKIY 1 HosLBP1a ( 428) PRLTIYVCREQPSST 1 DapLSF ( 443) PRLTLYLTQDQSQVF 1 LogGRH ( 788) SKVLLYVKEKQDTAF 1 NevLSF ( 432) PLLTLYVSLESTQQV 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 15 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 15 n= 16452 bayes= 10.8035 E= 3.4e-030 -153 -272 -279 -28 14 -286 -280 -333 63 -299 -278 -264 321 -249 -232 -10 -38 -278 -335 -360 -206 -259 -288 -187 -311 -296 -211 -256 76 58 134 -214 -372 -167 319 27 -227 -225 -258 79 -321 -252 -626 -557 -266 -516 -544 -63 -534 236 -161 -533 -583 -551 -524 -519 8 305 -373 -406 -351 -289 -587 -548 -194 -512 -492 -144 -489 186 165 -442 -557 -478 -465 -348 318 -190 -299 -373 -442 -348 -742 -653 -180 -632 -574 285 -630 268 174 -649 -629 -550 -567 -663 -460 -195 -310 -398 -640 -499 -665 -706 -239 -568 -431 -609 -662 -533 -553 -599 -655 -643 -595 -675 -648 -598 -258 493 -197 -192 -481 -435 -298 -453 -442 -31 -440 -25 -199 -461 -474 -491 -406 -463 -265 387 -386 -439 -278 374 -371 -245 -457 -345 -239 -390 200 -346 -291 -254 -438 -179 302 -53 5 -344 -327 -358 -292 -366 -376 21 -468 -356 -236 -396 261 66 -293 -259 -441 212 170 -344 -298 -351 -328 -359 -287 -566 16 372 -590 -392 -393 -484 -18 -473 -413 -329 -54 -220 -374 -408 -381 -411 -525 -519 -157 -281 -130 163 -323 22 -174 -325 -95 -294 -225 67 -315 162 -144 89 145 -268 -282 -264 -222 -465 208 280 -485 -320 -303 -425 -181 -395 -331 -236 -8 35 -272 -55 0 -347 -438 -412 -115 -248 146 53 -278 -202 89 -276 168 -244 -173 -107 -279 109 -95 36 88 -219 -235 -224 61 -110 -373 -318 -227 -330 -311 83 -316 -162 -140 -339 -364 -107 -282 -158 -169 348 -260 -320 -185 -153 -310 -267 235 -308 -38 -221 -265 -189 -161 -270 -349 -312 -244 -263 -58 -28 -7 412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 15 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 15 nsites= 14 E= 3.4e-030 0.000000 0.000000 0.000000 0.071429 0.071429 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.142857 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.142857 0.071429 0.000000 0.000000 0.000000 0.500000 0.142857 0.000000 0.000000 0.000000 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.642857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.500000 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.928571 0.000000 0.000000 0.000000 0.214286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.071429 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.000000 0.000000 0.000000 0.357143 0.142857 0.000000 0.000000 0.000000 0.285714 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.785714 0.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.000000 0.000000 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.214286 0.000000 0.214286 0.214286 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.071429 0.000000 0.071429 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 0.214286 0.071429 0.000000 0.000000 0.071429 0.000000 0.214286 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.142857 0.142857 0.000000 0.000000 0.000000 0.214286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.071429 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.071429 0.000000 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 15 regular expression -------------------------------------------------------------------------------- PR[VL][TL][LI]YV[RCK][KQ]E[EQST][ED][DK][VA][YF] -------------------------------------------------------------------------------- Time 3274.98 secs. ******************************************************************************** ******************************************************************************** MOTIF 16 width = 80 sites = 2 llr = 464 E-value = 7.1e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif 16 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::::a:::a:a::a:::::a:::a::::::::::::::::::a:::::::::::::a::::::::: pos.-specific C :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: probability D a::a::::::::::::::::::::::::::::a:::a::aa::::::::a:a:::::::::::::::aa::::::::::: matrix E :::::::::::::::::::::::::::::::::::::::::::aa::::::::::::::::::::::::::::::::a:: F ::a::::::::a:::::a:::::a::::a::::::::::::::::::::::::::::::::::::::::::::::::::a G ::::::::::::::::::::::::::a:::::::a:::::::::::::::::::a:::::::::::::::::::::a::: H :a::::::::a:a::::::::::::::::::::::::::::::::::::::::::::::a:::::::::::::::::::: I :::::::a:::::::::::::::::::::::::::::::::::::::::::::::::::::::::a::::::a::::::: K :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: L :::::::::::::::::::::::::::::::::::::::::::::a:a:::::::::::::::::::::::::::::::: M ::::::::::::::::::::::::::::::::::::::a:::::::::::::a::::::::::::::::::::::::::: N :::::::::::::a::::::::::::::::::::::::::::::::::a::::::a::::::::::::::::::a::::: P ::::::::aa::::a:a::::a:::a:::::::::::::::::::::::::::::::::::::::::::::::::a:::: Q ::::aa:::::::::a:::aa:::::::::a::::::::::::::::::::::a::::::::::::a::a:::a:::::: R :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: S :::::::::::::::::::::::::::::::a:::::::::a::::a::::::::::aa::::a:::::::a:::::::: T ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::a:a:::::::::::::a: V :::::::::::::::::::::::::::::a::::::::::::a:::::::a::::::::::a:::::::::::::::::: W :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Y ::::::a::::::::::::::::::::::::::::a::::::::::::::::::::::::a::::::::::::::::::: bits 6.9 6.2 5.5 * * 4.8 ** * *** * * * * * * ** * Relative 4.1 ******************************* ********* *** ********* **** ******* ******** Entropy 3.4 ******************************************************************************** (334.9 bits) 2.8 ******************************************************************************** 2.1 ******************************************************************************** 1.4 ******************************************************************************** 0.7 ******************************************************************************** 0.0 -------------------------------------------------------------------------------- Multilevel DHFDQQYIPPHFHNPQPFAQQPAFAPGAFVQSDAGYDAMDDSVEELSLNDVDMQGNASSHYVTSTIQDDQASIQNPGETF consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 16 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------------------------------------- AsnLSFL2 77 1.51e-101 INPGTAALGL DHFDQQYIPPHFHNPQPFAQQPAFAPGAFVQSDAGYDAMDDSVEELSLNDVDMQGNASSHYVTSTIQDDQASIQNPGETF RYHVTLRAPT AsnLSFL1 86 1.51e-101 INPGTAALGL DHFDQQYIPPHFHNPQPFAQQPAFAPGAFVQSDAGYDAMDDSVEELSLNDVDMQGNASSHYVTSTIQDDQASIQNPGETF RYHVTLRAPT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 16 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AsnLSFL2 1.5e-101 76_[16]_537 AsnLSFL1 1.5e-101 85_[16]_514 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 16 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 16 width=80 seqs=2 AsnLSFL2 ( 77) DHFDQQYIPPHFHNPQPFAQQPAFAPGAFVQSDAGYDAMDDSVEELSLNDVDMQGNASSHYVTSTIQDDQASIQNPGETF 1 AsnLSFL1 ( 86) DHFDQQYIPPHFHNPQPFAQQPAFAPGAFVQSDAGYDAMDDSVEELSLNDVDMQGNASSHYVTSTIQDDQASIQNPGETF 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 16 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 80 n= 14567 bayes= 12.8302 E= 7.1e-029 -273 -289 385 -62 -367 -288 -261 -370 -314 -381 -334 -67 -436 -328 -322 -322 -336 -334 -298 -332 -240 -181 -201 -214 -143 -251 453 -310 -216 -233 -183 -56 -316 -61 -106 -235 -223 -259 -113 -7 -283 -159 -414 -390 452 -381 -322 -187 -388 -104 -147 -378 -402 -432 -384 -345 -361 -203 -63 3 -273 -289 385 -62 -367 -288 -261 -370 -314 -381 -334 -67 -436 -328 -322 -322 -336 -334 -298 -332 -199 -220 -274 -75 -329 -310 -35 -303 -171 -219 -128 -194 -309 378 -136 -280 -251 -277 -198 -308 -199 -220 -274 -75 -329 -310 -35 -303 -171 -219 -128 -194 -309 378 -136 -280 -251 -277 -198 -308 -166 -122 -264 -234 156 -244 -13 -166 -211 -129 -117 -205 -307 -248 -193 -236 -224 -153 79 430 -216 -173 -376 -344 -167 -354 -373 361 -305 6 -20 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-------------------------------------------------------------------------------- DHFDQQYIPPHFHNPQPFAQQPAFAPGAFVQSDAGYDAMDDSVEELSLNDVDMQGNASSHYVTSTIQDDQASIQNPGETF -------------------------------------------------------------------------------- Time 3440.52 secs. ******************************************************************************** ******************************************************************************** MOTIF 17 width = 21 sites = 5 llr = 266 E-value = 1.0e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif 17 Description -------------------------------------------------------------------------------- Simplified A :::::::::2::::::::::: pos.-specific C ::::::::4::::::8::::: probability D :::::4::::::a:::::::: matrix E :::::2:a::::::::::::: F :::::::::::a::a:::::: G 2::::::::::::a::::::: H ::::::::::::::::::::: I ::::4::::::::::::2::: K 64:2::::::::::::::::: L ::::2:a:::::::::::::4 M ::::::::::::::::::::: N :4::::::::::::::::::: P ::4:::::::::::::::::6 Q :::4:4::::::::::::::: R :244::::::::::::::::: S ::::::::68a::::2:::2: T 2:2::::::::::::::8:8: V ::::4:::::::::::a:::: W ::::::::::::::::::a:: Y ::::::::::::::::::::: bits 6.9 * 6.2 * 5.5 * 4.8 * ** * Relative 4.1 * ****** * Entropy 3.4 *** ********** (76.7 bits) 2.8 ********************* 2.1 ********************* 1.4 ********************* 0.7 ********************* 0.0 --------------------- Multilevel KKPQIDLESSSFDGFCVTWTP consensus GNRRVQ CA S I SL sequence TRTKLE -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 17 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- AsnLSFL2 262 5.23e-25 DPIQGGIEDT KNRQIQLESSSFDGFCVTWTL NPSTGVSECS AsnLSFL1 271 5.23e-25 DPIQGGIEDT KNRQIQLESSSFDGFCVTWTL NPSTGVSECS MyfLSFL 427 1.98e-24 SGHMGGAEDP TKPRVDLECSSFDGFCVTWSP AAGASECPIS MygLSFL 358 1.04e-23 PGQLCGADDP GKPKLELECASFDGFCVTWTP APGAAECPIS TrvLSFL 345 1.05e-20 EAGQPAEGDD KRTRVDLESSSFDGFSVIWTP GLNGAAEVNI -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 17 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AsnLSFL2 5.2e-25 261_[17]_411 AsnLSFL1 5.2e-25 270_[17]_388 MyfLSFL 2e-24 426_[17]_429 MygLSFL 1e-23 357_[17]_437 TrvLSFL 1e-20 344_[17]_403 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 17 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 17 width=21 seqs=5 AsnLSFL2 ( 262) KNRQIQLESSSFDGFCVTWTL 1 AsnLSFL1 ( 271) KNRQIQLESSSFDGFCVTWTL 1 MyfLSFL ( 427) TKPRVDLECSSFDGFCVTWSP 1 MygLSFL ( 358) GKPKLELECASFDGFCVTWTP 1 TrvLSFL ( 345) KRTRVDLESSSFDGFSVIWTP 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 17 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 16278 bayes= 10.2028 E= 1.0e-027 -156 -225 -192 -136 -331 56 -182 -288 343 -276 -213 -129 -323 -148 -7 -211 44 -252 -248 -271 -176 -252 -209 -123 -345 -226 -132 -291 270 -248 -191 236 -324 -80 193 -216 -183 -247 -226 -249 -102 -194 -208 -141 -281 -212 -184 -254 -49 -231 -192 -165 276 -149 222 -181 67 -205 -242 -266 -197 -259 -282 -142 -370 -259 -134 -298 197 -249 -194 -161 -341 225 285 -248 -203 -255 -224 -262 -227 -179 -423 -390 -198 -397 -413 327 -356 66 -48 -365 -456 -411 -368 -383 -239 219 -269 -286 -139 -379 235 217 -409 -229 -212 -343 -99 -313 -250 -135 -292 216 -191 -229 -213 -265 -355 -334 -300 -227 -484 -399 -123 -419 -374 -76 -374 346 4 -420 -423 -355 -327 -428 -316 -123 -216 -277 -461 -495 -220 401 -574 -479 -479 -516 -515 -580 -525 -418 -642 -400 -521 -565 -529 -519 -491 -564 -27 439 -351 -363 -332 -149 -355 -327 -334 -337 -270 -237 -326 -353 -312 247 -66 -222 -303 -346 100 -83 -323 -331 -322 -176 -333 -336 -288 -336 -258 -188 -320 -334 -273 282 24 -255 -287 -330 -142 -143 -333 -366 -341 -251 -351 -372 -307 -369 -297 -201 -363 -371 -295 309 13 -332 -301 -337 -318 -182 -447 -427 459 -414 -381 -223 -429 -134 -180 -418 -431 -477 -426 -375 -406 -241 -102 -39 -303 -308 390 -90 -390 -326 -287 -394 -363 -406 -360 -87 -477 -373 -357 -357 -374 -359 -316 -357 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 -318 -182 -447 -427 459 -414 -381 -223 -429 -134 -180 -418 -431 -477 -426 -375 -406 -241 -102 -39 -295 618 -520 -475 -443 -432 -488 -401 -510 -441 -367 -468 -540 -527 -451 -258 -370 -412 -456 -508 -111 -119 -389 -345 -249 -351 -347 19 -348 -159 -159 -371 -383 -402 -312 -364 -188 382 -307 -364 -172 -125 -337 -335 -254 -320 -315 88 -261 -205 -131 -177 -375 -292 -261 -61 342 -77 -249 -313 -378 -270 -416 -405 -108 -378 -378 -384 -383 -228 -267 -382 -475 -397 -334 -447 -401 -329 672 -143 -158 -123 -314 -329 -304 -294 -308 -216 -254 -306 -167 -152 -362 -281 -252 63 347 -167 -260 -343 -136 -219 -308 -264 -240 -275 -297 -208 -241 138 -170 -300 333 -278 -253 -248 -233 -197 -276 -312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 17 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 5 E= 1.0e-027 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.400000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.400000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.400000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 0.400000 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0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 17 regular expression -------------------------------------------------------------------------------- [KGT][KNR][PRT][QRK][IVL][DQE]LE[SC][SA]SFDGF[CS]V[TI]W[TS][PL] -------------------------------------------------------------------------------- Time 3603.86 secs. ******************************************************************************** ******************************************************************************** MOTIF 18 width = 21 sites = 5 llr = 261 E-value = 9.9e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif 18 Description -------------------------------------------------------------------------------- Simplified A ::::::::a:6:::4:::::: pos.-specific C ::::::::::::::::::::: probability D :6::::::::::::::6:::: matrix E :4:::::::::a::::::::: F :::::::::::::::::2::: G :::::::::::::a:4::8:: H ::::::::::::::::::::: I a::::::a::4:::::::::: K ::a:2::::::::::2::282 L :::a::::::::::2::2::: M ::::::::::::4:4::2::: N ::::4:::::::2:::4:::: P ::::::::::::::::::::: Q :::::aa::a::::::::::: R ::::4::::::::::4:::28 S ::::::::::::4:::::::: T ::::::::::::::::::::: V ::::::::::::::::::::: W ::::::::::::::::::::: Y :::::::::::::::::4::: bits 6.9 6.2 5.5 4.8 Relative 4.1 * * ***** * * Entropy 3.4 **** ***** * * * *** (75.2 bits) 2.8 ********************* 2.1 ********************* 1.4 ********************* 0.7 ********************* 0.0 --------------------- Multilevel IDKLNQQIAQAEMGAGDYGKR consensus E R I S MRNFKRK sequence K N LK L M -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 18 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- MygLSFL 461 6.34e-25 SNDVAHVKKT IDKLNQQIAQIESGMRDMGKR KRSGSLAKGM MyfLSFL 526 2.51e-24 SNDVAHVKKT IDKLNQQIAQIESGMRDLGKR KRAGSVAKGL AsnLSFL2 367 2.79e-24 SNDVAHVKKT IEKLRQQIAQAEMGAGNYGKR KRSNGSIALK AsnLSFL1 376 2.79e-24 SNDVAHVKKT IEKLRQQIAQAEMGAGNYGKR KRSNGSIALK TrvLSFL 449 3.62e-19 SNDVAHVKKS IDKLKQQIAQAENGLKDFKRK RAGGLGKAGI -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 18 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MygLSFL 6.3e-25 460_[18]_334 MyfLSFL 2.5e-24 525_[18]_330 AsnLSFL2 2.8e-24 366_[18]_306 AsnLSFL1 2.8e-24 375_[18]_283 TrvLSFL 3.6e-19 448_[18]_299 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 18 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 18 width=21 seqs=5 MygLSFL ( 461) IDKLNQQIAQIESGMRDMGKR 1 MyfLSFL ( 526) IDKLNQQIAQIESGMRDLGKR 1 AsnLSFL2 ( 367) IEKLRQQIAQAEMGAGNYGKR 1 AsnLSFL1 ( 376) IEKLRQQIAQAEMGAGNYGKR 1 TrvLSFL ( 449) IDKLKQQIAQAENGLKDFKRK 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 18 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 16278 bayes= 10.2028 E= 9.9e-025 -270 -220 -426 -405 -218 -406 -436 378 -364 -33 -59 -376 -475 -427 -385 -399 -273 96 -283 -293 -217 -344 348 179 -411 -280 -263 -378 -209 -372 -318 -102 -377 -188 -287 -297 -296 -319 -345 -359 -330 -300 -465 -398 -495 -415 -380 -382 402 -433 -360 -340 -467 -390 -25 -457 -377 -425 -328 -442 -300 -227 -484 -399 -123 -419 -374 -76 -374 346 4 -420 -423 -355 -327 -428 -316 -123 -216 -277 -178 -249 -209 -126 -346 -225 -130 -292 190 -249 -193 236 -323 -80 282 -217 -185 -249 -223 -249 -247 -252 -357 -119 -381 -373 -62 -353 -252 -256 -156 -245 -356 389 -191 -334 -307 -330 -230 -369 -247 -252 -357 -119 -381 -373 -62 -353 -252 -256 -156 -245 -356 389 -191 -334 -307 -330 -230 -369 -270 -220 -426 -405 -218 -406 -436 378 -364 -33 -59 -376 -475 -427 -385 -399 -273 96 -283 -293 363 -49 -374 -326 -300 -143 -367 -276 -331 -278 -218 -323 -402 -368 -314 -132 -201 -129 -267 -351 -247 -252 -357 -119 -381 -373 -62 -353 -252 -256 -156 -245 -356 389 -191 -334 -307 -330 -230 -369 290 -71 -388 -320 -197 -204 -346 234 -310 -114 -100 -317 -384 -347 -305 -194 -180 18 -237 -274 -461 -495 -220 401 -574 -479 -479 -516 -515 -580 -525 -418 -642 -400 -521 -565 -529 -519 -491 -564 -70 -120 -120 -98 -203 -147 -146 -166 -76 -173 319 143 -264 -135 -111 169 -26 -130 -188 -188 -189 -275 -279 -330 -419 403 -354 -437 -312 -456 -363 -238 -421 -406 -299 -293 -360 -373 -295 -389 212 -87 -368 -283 -80 -251 -271 -10 -255 141 353 -281 -352 -279 -248 -237 -162 -13 -138 -181 -177 -246 -233 -139 -351 233 -144 -297 180 -256 -200 -140 -330 -92 279 -228 -198 -253 -225 -259 -260 -291 361 -83 -379 -216 -218 -399 -258 -401 -356 155 -405 -286 -296 -246 -282 -359 -319 -322 -157 -116 -303 -255 235 -284 -39 -110 -248 72 194 -252 -328 -284 -225 -246 -223 -116 12 362 -171 -263 -251 -294 -404 394 -325 -414 -35 -434 -338 -207 -406 -364 -257 -271 -336 -352 -281 -369 -319 -296 -457 -373 -489 -405 -352 -373 398 -415 -344 -324 -459 -342 29 -438 -361 -409 -320 -428 -305 -217 -419 -363 -424 -350 -208 -371 5 -346 -320 -289 -378 -229 417 -376 -344 -403 -214 -369 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 18 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 5 E= 9.9e-025 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.400000 0.000000 0.000000 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 18 regular expression -------------------------------------------------------------------------------- I[DE]KL[NRK]QQIAQ[AI]E[MSN]G[AML][GRK][DN][YFLM][GK][KR][RK] -------------------------------------------------------------------------------- Time 3765.93 secs. ******************************************************************************** ******************************************************************************** MOTIF 19 width = 80 sites = 2 llr = 454 E-value = 2.2e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif 19 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::::a:::a:::::::::::::::::::::::::::a::::::::::::::::::::::a:::::: pos.-specific C ::::::::::::::::::::::::::::::::::::a::::::::::::::::::::::::::::a:::::::::::::: probability D ::::::::::::::::a:::::::::::::::::::::::::::::::a::::::::::::::::::::::a:::::::: matrix E :a::::a:::::::::::::::::::::::::::::::::::::::::::::::::::::a::::::a:::::::::::: F ::a::::::::::a::::::::::::::::::::::::::::::::a::::::::::::::::::::::::::::::::: G ::::::::::a::::::a:::::::::::::::::::::::::::::::::::a::::::::::::::::a::::::::: H :::::::::::::::::::::a:::::::::::::::a::::::::::::::a::::::::::::::::::::::::a:: I :::::::::::::::a::::::::::::::a:a::::::::::::a:::::::::::::::::::::::::::::::::: K ::::a:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::a:::a::: L :::a::::::::::::::::a::::::::::::::::::::a:::::::::::::a:::::::::::::a:::::a:::: M :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: N :::::::a:::::::::::::::::::::::::a::::::a:::a::::::::::::::::a:::::::::::::::::: P :::::::::::::::::::::::::a:::::::::a::a:::::::::::::::::::::::::a:::::::::::::a: Q ::::::::::::::::::::::::::::::::::::::::::a::::::::::::::::::::::::::::::::::::: R a::::a:::a::a::::::::::::::::::::::::::::::::::::::::::::::a:::a:::::::::::::::: S ::::::::a::a::a::::a::::a::aaa:a::a::::::::a:::::a::::a:a:a:::a:::a::::::::::::: T ::::::::::::::::::::::::::a::::::::::::a:::::::::::::::::a::::::::::::::::a::::: V :::::::::::::::::::::::a::::::::::::::::::::::::::::::::::::::::::::a::::::::::a W :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Y :::::::::::::::::::::::::::::::::::::::::::::::a:::a:::::::::::::::::::::::::::: bits 6.9 6.2 * * 5.5 * * 4.8 * * * ** ** ** * * Relative 4.1 *** **** ** ** **** *** ** * ** ****** * ***** **** * *** *** ** ***** **** Entropy 3.4 ******************************************************************************** (327.5 bits) 2.8 ******************************************************************************** 2.1 ******************************************************************************** 1.4 ******************************************************************************** 0.7 ******************************************************************************** 0.0 -------------------------------------------------------------------------------- Multilevel REFLKRENSRGSRFSIDGASLHAVSPTSSSISINSPCHPTNLQSNIFYDSAYHGSLSTSRENSRPCSEVLGDKATLKHPV consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 19 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------------------------------------- AsnLSFL2 471 2.55e-99 DLFPVMLPES REFLKRENSRGSRFSIDGASLHAVSPTSSSISINSPCHPTNLQSNIFYDSAYHGSLSTSRENSRPCSEVLGDKATLKHPV KVPKVASTDG AsnLSFL1 480 2.55e-99 DLFPVMLPES REFLKRENSRGSRFSIDGASLHAVSPTSSSISINSPCHPTNLQSNIFYDSAYHGSLSTSRENSRPCSEVLGDKATLKHPV KVPKVASTDG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 19 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AsnLSFL2 2.5e-99 470_[19]_143 AsnLSFL1 2.5e-99 479_[19]_120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 19 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 19 width=80 seqs=2 AsnLSFL2 ( 471) REFLKRENSRGSRFSIDGASLHAVSPTSSSISINSPCHPTNLQSNIFYDSAYHGSLSTSRENSRPCSEVLGDKATLKHPV 1 AsnLSFL1 ( 480) REFLKRENSRGSRFSIDGASLHAVSPTSSSISINSPCHPTNLQSNIFYDSAYHGSLSTSRENSRPCSEVLGDKATLKHPV 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 19 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 80 n= 14567 bayes= 12.8302 E= 2.2e-024 -290 -205 -391 -351 -396 -329 -202 -356 -68 -334 -312 -281 -361 -233 420 -361 -332 -385 -202 -350 -415 -475 -197 399 -547 -446 -445 -492 -432 -539 -485 -383 -580 -356 -462 -514 -481 -483 -470 -528 -283 -159 -414 -390 452 -381 -322 -187 -388 -104 -147 -378 -402 -432 -384 -345 -361 -203 -63 3 -222 -163 -402 -319 -62 -348 -304 -4 -290 329 50 -340 -354 -287 -258 -350 -243 -52 -142 -205 -295 -282 -397 -319 -452 -369 -330 -355 398 -391 -324 -295 -426 -319 -8 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364 -232 -208 -200 -195 -218 -272 -314 -104 -91 -243 -228 -236 -216 -242 -154 -181 -219 -129 -122 -286 -225 -189 6 340 -109 -205 -258 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 -216 -173 -376 -344 -167 -354 -373 361 -305 6 -20 -323 -416 -366 -323 -344 -221 130 -230 -242 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 -216 -173 -376 -344 -167 -354 -373 361 -305 6 -20 -323 -416 -366 -323 -344 -221 130 -230 -242 -279 -233 -154 -284 -313 -243 -104 -288 -234 -345 -283 411 -367 -258 -262 -189 -221 -306 -228 -289 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 -93 -196 -249 -209 -278 -221 -252 -272 -194 -240 -237 -247 364 -232 -208 -200 -195 -218 -272 -314 -341 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-388 -104 -147 -378 -402 -432 -384 -345 -361 -203 -63 3 -166 -122 -264 -234 156 -244 -13 -166 -211 -129 -117 -205 -307 -248 -193 -236 -224 -153 79 430 -273 -289 385 -62 -367 -288 -261 -370 -314 -381 -334 -67 -436 -328 -322 -322 -336 -334 -298 -332 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 341 1 -272 -213 -224 -82 -279 -188 -223 -198 -145 -235 -288 -267 -222 -80 -135 -58 -201 -263 -166 -122 -264 -234 156 -244 -13 -166 -211 -129 -117 -205 -307 -248 -193 -236 -224 -153 79 430 -240 -181 -201 -214 -143 -251 453 -310 -216 -233 -183 -56 -316 -61 -106 -235 -223 -259 -113 -7 -147 -235 -240 -284 -378 397 -314 -390 -269 -408 -321 -198 -378 -360 -260 -252 -312 -326 -262 -348 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 -223 -244 -222 -163 -402 -319 -62 -348 -304 -4 -290 329 50 -340 -354 -287 -258 -350 -243 -52 -142 -205 -58 -81 -221 -227 -252 -163 -244 -267 -191 -270 -204 -110 -264 -253 -194 280 79 -226 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 19 regular expression -------------------------------------------------------------------------------- REFLKRENSRGSRFSIDGASLHAVSPTSSSISINSPCHPTNLQSNIFYDSAYHGSLSTSRENSRPCSEVLGDKATLKHPV -------------------------------------------------------------------------------- Time 3927.28 secs. ******************************************************************************** ******************************************************************************** MOTIF 20 width = 80 sites = 2 llr = 441 E-value = 7.5e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif 20 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::::::5:::5:::::::::::::::::::::::::::::::::::::::::::5::::::::::: pos.-specific C :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: probability D :::::::::::::::::::::::::::::::::::::::::::::aa:::5:5::::::::a:::::::::::::::::: matrix E :::::::::::::::::::::::::::::::::a::a::::a:::::::::::::::::::::::::::::::::::::: F :::::::a:::::a:::::::a::::a:::::a:::::::::::::::::::::::::::::::a::::::::::::::: G ::::::::::::::::::::5:::::::::::::5::a::a:::::::a:::5::::::::::::::::::::::::::: H :a:::5::5:::::a:a::::::::a::a::::::::::::::::::::::::::55a:::::::5::::5::::::::a I ::5::::::::::::::::::::::::::::::::5:::5::::5::::::::::::::::::::::::::::::::::: K :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: L :::::::::::::::::::::::::::::::::::::::::::::::::5:::5::::::::a5:::::5::::::::5: M ::5::::::::::::a:::::::::::::::::::5:::::::::::a:5:a:5:::::::::5:::::5:::a::::5: N :::::::::a:a::::::::::::::::::::::::::::::::::::::::::::::::::::::::5::5:::::::: P ::::a:::::::a:::::::::aa::::::a:::::::a::::a::::::::::55::::5:::::a5::5::::aaa:: Q a::a:5a:5::::::::aaa::::5::::a::::::::::::::::::::::::5:5:a:::::::::::::::5::::: R :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::5::::::::5::::: S :::::::::::::::::::::::::::5:::a::5:::::::a:::::::5::::::::a5::::::5::::5::::::: T :::::::::::::::::::::::::::5:::::::::::::::::::::::::::::::::::::::::::55::::::: V ::::::::::a::::::::::::::::::::::::::::5::::5::::::::::::::::::::::::::::::::::: W :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Y :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: bits 6.9 6.2 5.5 * * * * 4.8 * * **** * ** * * * * * * * * Relative 4.1 ***** ** *********** *** ** *** ** **** ** * **** * ** * * * * *** * Entropy 3.4 ******************** *** ** ****** *************** *** ***** ****** **** ******* (318.2 bits) 2.8 ******************************************************************************** 2.1 ******************************************************************************** 1.4 ******************************************************************************** 0.7 ******************************************************************************** 0.0 -------------------------------------------------------------------------------- Multilevel QHIQPHQFHNVNPFHMHQQQAFPPAHFSHQPSFEGIEGPIGESPIDDMGLDMDLPHHHQSPDLLFHPPALHNSMQPPPLH consensus M Q Q G Q T SM V V MS GMQPQ S M R SNMPTT R M sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 20 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------------------------------------- MygLSFL 167 2.35e-96 TAFHFQAALP QHIQPQQFHNVNPFHMHQQQGFPPQHFSHQPSFEGMEGPIGESPVDDMGMSMDMQHHHQSSDLMFHPSAMHTSMQPPPMH PSAEKFRYHA MyfLSFL 236 1.28e-94 PFDAFHAHLP QHMQPHQFQNVNPFHMHQQQAFPPAHFTHQPSFESIEGPVGESPIDDMGLDMGLPPQHQSPDLLFRPPNLPNTMRPPPLH PSAEKFRYHV -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 20 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- MygLSFL 2.4e-96 166_[20]_569 MyfLSFL 1.3e-94 235_[20]_561 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 20 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 20 width=80 seqs=2 MygLSFL ( 167) QHIQPQQFHNVNPFHMHQQQGFPPQHFSHQPSFEGMEGPIGESPVDDMGMSMDMQHHHQSSDLMFHPSAMHTSMQPPPMH 1 MyfLSFL ( 236) QHMQPHQFQNVNPFHMHQQQAFPPAHFTHQPSFESIEGPVGESPIDDMGLDMGLPPQHQSPDLLFRPPNLPNTMRPPPLH 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 20 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 80 n= 14567 bayes= 12.8302 E= 7.5e-020 -199 -220 -274 -75 -329 -310 -35 -303 -171 -219 -128 -194 -309 378 -136 -280 -251 -277 -198 -308 -240 -181 -201 -214 -143 -251 453 -310 -216 -233 -183 -56 -316 -61 -106 -235 -223 -259 -113 -7 -182 -132 -375 -328 -102 -330 -319 281 -288 43 369 -306 -385 -313 -291 -318 -197 85 -158 -200 -199 -220 -274 -75 -329 -310 -35 -303 -171 -219 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0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 20 regular expression -------------------------------------------------------------------------------- QH[IM]QP[HQ]QF[HQ]NVNPFHMHQQQ[AG]FPP[AQ]HF[ST]HQPSFE[GS][IM]EGP[IV]GESP[IV]DDMG[LM][DS]M[DG][LM][PQ][HP][HQ]HQS[PS]DL[LM]F[HR]P[PS][AN][LM][HP][NT][ST]M[QR]PPP[LM]H -------------------------------------------------------------------------------- Time 4086.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HosGRHL2 2.98e-150 21_[12(1.01e-20)]_178_[3(3.37e-31)]_13_[7(6.68e-17)]_37_[2(1.08e-23)]_[6(1.55e-15)]_8_[1(2.79e-30)]_101_[15(1.80e-14)]_[5(6.04e-51)]_14 HosLBP1a 5.34e-207 8_[12(1.03e-27)]_23_[3(5.31e-31)]_14_[7(5.09e-17)]_2_[9(2.25e-18)]_12_[2(5.17e-19)]_2_[6(6.80e-14)]_10_[1(1.63e-27)]_4_[14(1.66e-21)]_90_[4(3.70e-55)]_3_[15(1.59e-11)]_23_[5(7.88e-33)]_14 CiiGRH 9.46e-117 4_[3(9.38e-27)]_12_[7(1.16e-14)]_36_[2(2.93e-21)]_[6(1.90e-14)]_8_[1(1.05e-26)]_92_[15(2.03e-14)]_[5(7.99e-47)]_1 CiiLSF 4.47e-167 6_[12(3.38e-28)]_19_[3(2.83e-32)]_12_[7(4.15e-19)]_2_[9(5.27e-17)]_12_[2(8.24e-21)]_2_[6(1.20e-16)]_10_[1(6.05e-26)]_4_[14(9.51e-17)]_59_[4(2.48e-47)]_3_[15(7.12e-05)]_13_[5(9.88e-06)]_14 DrmGRHA 6.54e-121 65_[8(6.86e-05)]_268_[6(1.18e-05)]_226_[3(2.37e-28)]_12_[7(2.81e-18)]_4_[9(5.19e-15)]_12_[2(1.19e-19)]_[6(1.11e-15)]_7_[1(7.44e-29)]_152_[15(4.15e-14)]_[5(1.34e-36)]_18 Drmgemini 1.26e-145 40_[16(3.69e-05)]_276_[3(2.09e-36)]_11_[7(1.00e-15)]_2_[9(1.03e-16)]_14_[2(1.81e-22)]_2_[6(4.86e-16)]_47_[1(8.31e-26)]_4_[14(2.76e-18)]_90_[4(7.49e-47)]_3_[15(3.77e-05)]_120 CapGRH 1.97e-53 [7(5.38e-16)]_62_[2(1.98e-20)]_[6(2.86e-16)]_7_[1(2.07e-29)]_113_[5(7.70e-08)]_23 CapLSF 4.94e-199 51_[12(3.69e-31)]_16_[3(1.11e-36)]_2_[7(3.81e-18)]_2_[9(1.33e-20)]_12_[2(1.32e-24)]_2_[6(1.39e-15)]_8_[1(3.33e-27)]_18_[14(5.65e-22)]_98_[4(2.22e-61)]_144_[5(4.03e-08)]_20 LogGRH 9.43e-112 362_[13(7.67e-05)]_108_[3(6.63e-26)]_11_[7(3.68e-16)]_4_[9(3.14e-14)]_13_[2(4.39e-18)]_[6(2.28e-14)]_6_[1(2.34e-27)]_91_[15(6.80e-10)]_[5(4.99e-40)]_18 LogLSF 6.16e-222 45_[12(2.88e-31)]_15_[3(1.08e-37)]_11_[7(3.36e-17)]_2_[9(1.45e-22)]_12_[2(1.81e-22)]_2_[6(2.14e-15)]_8_[1(1.45e-27)]_4_[14(5.07e-23)]_95_[4(8.74e-61)]_3_[15(3.44e-15)]_[5(8.08e-19)]_20 NevLSF 2.64e-161 3_[9(2.63e-10)]_79_[3(6.62e-30)]_11_[7(5.90e-13)]_2_[9(5.01e-16)]_13_[2(1.13e-14)]_2_[6(5.79e-12)]_9_[1(2.89e-22)]_4_[14(8.23e-14)]_56_[4(3.39e-52)]_3_[15(1.54e-09)]_6_[5(2.80e-40)]_14 NevGRH1 1.27e-92 8_[3(3.61e-32)]_13_[7(1.91e-17)]_4_[9(8.30e-16)]_11_[2(7.35e-23)]_[6(5.48e-18)]_9_[1(6.48e-29)]_1 NvGRH2 3.91e-27 64_[15(1.59e-14)]_[5(5.24e-32)]_17 PhbLSFL1 2.34e-76 89_[3(1.45e-30)]_9_[7(7.85e-13)]_5_[9(7.84e-05)]_16_[2(6.58e-22)]_[6(2.67e-13)]_5_[1(6.90e-28)]_22_[12(2.42e-05)]_97_[5(4.57e-08)]_18 AmqLSF 1.04e-92 40_[7(1.51e-12)]_2_[9(3.64e-11)]_12_[2(2.01e-14)]_2_[6(1.25e-13)]_11_[1(6.38e-25)]_87_[4(7.81e-52)]_15_[5(4.65e-11)]_31 AmqGRH 8.62e-132 153_[13(2.32e-05)]_74_[3(3.00e-31)]_9_[7(2.94e-15)]_4_[9(1.66e-15)]_11_[2(3.22e-20)]_[6(1.72e-14)]_13_[1(6.68e-27)]_91_[18(1.03e-05)]_4_[15(1.99e-15)]_[5(1.44e-43)]_15 MobLSF 5.75e-33 9_[3(4.98e-05)]_28_[9(5.43e-06)]_15_[2(3.38e-10)]_1_[6(6.61e-06)]_6_[1(2.89e-09)]_274_[4(1.01e-34)]_4 PhbLSFL2 1.60e-70 297_[1(3.72e-05)]_39_[3(5.35e-30)]_7_[7(3.14e-12)]_5_[9(1.70e-11)]_10_[2(4.14e-19)]_[6(1.52e-12)]_29_[1(1.18e-26)]_111_[6(5.12e-05)]_31_[5(2.95e-06)]_33 AsnLSFL1 0.00e+00 18_[13(1.14e-48)]_26_[16(1.51e-101)]_[3(7.37e-30)]_12_[7(3.86e-17)]_1_[11(2.01e-34)]_1_[17(5.23e-25)]_2_[2(1.38e-18)]_[6(4.88e-15)]_13_[1(2.07e-27)]_1_[18(2.79e-24)]_23_[8(8.53e-65)]_3_[19(2.55e-99)]_14_[10(3.23e-45)]_[5(1.47e-46)]_4 AsnLSFL2 0.00e+00 9_[13(1.14e-48)]_26_[16(1.51e-101)]_[3(7.37e-30)]_12_[7(3.86e-17)]_1_[11(2.01e-34)]_1_[17(5.23e-25)]_2_[2(1.38e-18)]_[6(4.88e-15)]_13_[1(2.07e-27)]_1_[18(2.79e-24)]_23_[8(8.53e-65)]_3_[19(2.55e-99)]_14_[10(3.23e-45)]_[5(1.47e-46)]_27 BrfLSF 1.05e-207 13_[12(5.01e-30)]_14_[3(5.17e-32)]_12_[7(1.66e-17)]_2_[9(3.76e-19)]_12_[2(6.63e-18)]_2_[6(6.59e-15)]_5_[1(4.73e-28)]_2_[14(1.37e-17)]_55_[4(1.03e-59)]_3_[15(2.59e-14)]_[5(7.14e-25)]_15 BrfGRH 1.22e-125 35_[12(2.26e-20)]_22_[14(2.49e-06)]_129_[3(7.14e-27)]_12_[7(1.13e-15)]_5_[9(5.75e-05)]_11_[2(2.11e-18)]_16_[1(2.96e-27)]_89_[15(5.23e-14)]_[5(1.04e-48)]_19 DapLSF 1.07e-206 48_[12(3.05e-28)]_23_[3(3.71e-35)]_11_[7(1.24e-17)]_2_[9(6.26e-18)]_12_[2(5.40e-23)]_2_[6(7.87e-16)]_10_[1(3.54e-26)]_4_[14(6.38e-23)]_68_[4(1.46e-54)]_3_[15(1.03e-10)]_[5(1.15e-20)]_19 DapGRH 5.61e-63 115_[3(1.07e-28)]_12_[7(6.26e-20)]_4_[9(1.08e-14)]_12_[2(4.14e-19)]_[6(2.64e-15)]_32 MyfLSFL 0.00e+00 162_[13(4.65e-37)]_32_[20(1.28e-94)]_6_[3(2.68e-31)]_11_[7(1.10e-18)]_1_[11(7.71e-32)]_2_[17(1.98e-24)]_[2(1.24e-18)]_[6(3.31e-14)]_9_[1(2.96e-27)]_1_[18(2.51e-24)]_22_[8(3.10e-59)]_104_[10(3.69e-45)]_[5(1.16e-43)]_45 MygLSFL 0.00e+00 92_[13(2.71e-40)]_33_[20(2.35e-96)]_6_[3(7.37e-30)]_11_[7(1.10e-18)]_1_[11(1.24e-35)]_2_[17(1.04e-23)]_[2(5.77e-19)]_[6(4.88e-15)]_13_[1(2.07e-27)]_1_[18(6.34e-25)]_21_[8(6.58e-56)]_108_[10(1.55e-37)]_1_[5(1.44e-43)]_45 TrvLSFL 6.26e-239 85_[13(2.77e-08)]_30_[16(5.85e-06)]_3_[3(3.87e-30)]_12_[7(3.31e-15)]_1_[11(4.32e-31)]_1_[17(1.05e-20)]_1_[2(5.40e-18)]_[6(2.67e-13)]_13_[1(1.65e-26)]_1_[18(3.62e-19)]_21_[8(2.85e-53)]_81_[10(1.07e-38)]_1_[5(1.72e-39)]_37 TraGRH 1.25e-116 4_[7(1.66e-17)]_4_[9(2.42e-16)]_11_[2(4.97e-22)]_[6(5.48e-18)]_9_[1(4.21e-27)]_82_[15(6.30e-13)]_[5(1.08e-47)]_16 MnlGRH 3.18e-86 21_[7(2.80e-06)]_4_[9(2.60e-12)]_10_[2(4.62e-20)]_[6(9.67e-14)]_9_[1(2.85e-26)]_213_[15(1.59e-11)]_[5(1.06e-41)]_74 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 20 reached. ******************************************************************************** CPU: compute-0-13.local ********************************************************************************