{"text_format":"3","workbook":"xls","n_sheets":4,"sheets":["Table S1","Table S2","Table S3","Table S4"],"not_rendered":{"external_links":1,"defined_names":2,"comments":5},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Table S1","index":0,"n_rows":55,"n_cols":3,"rows_kept":55,"flags":["formulas_cached_only"]}
["Supplementary Table 1.  DNA samples used to generate nuclear DNA sequences for this study (SWFSC = Southwest Fisheries Science Center, La Jolla)."]
["Species","DNA source","Genes Sequenced"]
["Tursiops truncatus","SWFSC Z38274","AMBN-ex13 "]
[null,null,"OR1I1"]
["Delphinus delphis","SWFSC Z31912","ATP7A CSN2-in7"]
["Delphinus tropicalis","G. Yang","BDNF "]
["Globicephala macrorhynchus","SWFSC Z537","ATP7A CSN2-in7 ZP3"]
[null,"Smithsonian Institution, Division of Mammals"]
["Grampus griseus","G. Yang","BDNF "]
["Grampus griseus","SWFSC Z483","CSN2-ex7 CSN3 FGG"]
[null,"Smithsonian Institution, Division of Mammals"]
["Grampus griseus","SWFSC Z39083","OR1I1"]
["Pseudorca crassidens","SWFSC Z38069","AMBN-ex6 ATP7A "]
["Orcinus orca","SWFSC Z6004","AMBN-ex6 CSN2-in7"]
[null,"The Marine Mammal Center - Sausalito","ENAM"]
["Phocoena phocoena","SWFSC Z32","AMBN-ex6 ATP7A "]
[null,null,"BDNF CSN2-ex7"]
[null,null,"CSN3 FGG ZP3"]
["Phocoena phocoena","SWFSC Z28452","CSN2-in7"]
[null,"The Marine Mammal Center - Sausalito"]
["Phocoenoides dalli","G. Yang","BDNF "]
["Phocoenoides dalli","SWFSC Z711","CSN2-ex7 FGG"]
["Monodon monoceros","SWFSC Z8260","BTN1A1"]
[null,"M. P. Heide-Jørgensen"]
[null,"Greenland Institute of Natural Resources"]
["Pontoporia blainvillei","G. Yang","BDNF "]
["Lipotes vexillifer","G. Yang","ATP7A CSN2-ex7"]
[null,null,"PRM1 RAG1"]
[null,null,"RNASE1 SRY "]
["Ziphius cavirostris","M. Milinkovitch","ATP7A"]
["Ziphius cavirostris","SWFSC Z2157","ENAM"]
["Mesoplodon densirostris","G. Yang","BDNF"]
["Mesoplodon  bidens","SWFSC Z3859","BTN1A1"]
["Mesoplodon peruvianus","M. Milinkovitch","CSN2-in7 CSN3 FGG"]
["Tasmacetus shepherdi","SWFSC Z4971","CSN2-ex7 CSN3 FGG"]
[null,"Smithsonian Institution, Division of Mammals"]
["Platanista gangetica","G. Yang","BDNF "]
["Platanista minor","SWFSC Z15224","AMBN-ex6 "]
[null,"G. Braulik","AMBN-ex13 "]
[null,"World Wildlife Fund","ATP7A CSN2-ex7"]
[null,null,"OR1I1 ZP3"]
["Kogia breviceps","SWFSC Z10119","AMBN-ex6 "]
[null,null,"AMBN-ex13"]
["Kogia breviceps","SWFSC Z21","FGG"]
["Kogia sima","SWFSC Z23604","ATP7A BDNF"]
["Kogia sima","SWFSC 10124","OR1I1"]
["Balaenoptera physalus","H. Rosenbaum","RNASE1"]
["Megaptera novaeangliae","SWFSC Z11727","CSN2-in7"]
["Megaptera novaeangliae","M. Milinkovitch","FGG"]
["Eschrichtius robustus","SWFSC Z13090","CSN2-in7"]
[null,"The Marine Mammal Center - Sausalito"]
["Eschrichtius robustus","SWFSC Z5750","CSN3 FGG RNASE1"]
["Caperea marginata","SWFSC Z5988","CSN3 FGG"]
["Caperea marginata","SWFSC Z26572","BTN1A1 CSN2-in7"]
[null,"South Australian Museum"]

{"sheet":"Table S2","index":1,"n_rows":50,"n_cols":15,"rows_kept":50,"flags":["formulas_cached_only"]}
[null,null,"Note: All ages in millions of years old."]
["Taxon/OTU","Suborder","FAD Point estimate (rounded)","FAD Lower Bound","FAD Upper Bound","FAD Average","LAD Point Estimate (rounded)","LAD Lower Bound","LAD Upper Bound","LAD Average","Number of specimens","Reference for Age","Formation","Distribution","Reference fr Distribution (If different from references for age)"]
["Aetiocetus cotylalveus","Mysticeti",30,30.8,28.5,29.65,30,30.8,28.5,29.65,"single","Prothero (2003)","Yaquina Formation","Oregon","paleobiology database"]
["ChM PV4745","Mysticeti",30,30,29,29.5,30,30,29,29.5,"single","Weems and Harris (2008)","Ashley Formation","South Carolina"]
["ChM PV5720","Mysticeti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["Chonecetus goedertorum","Mysticeti",26,28.4,23,25.7,25.8,28.4,23,25.7,"multiple","Prothero (2003)","Pysht Formation","Washington","paleobiology database"]
["Diorocetus hiatus","Mysticeti",14,14.5,14,14.25,13,13.2,13,13.1,"multiple","Kidwell (1997); Browning et al. (2006)","zones 13, 14, Calvert Formation","Maryland, Virginia","paleobiology database"]
["Eomysticetus whitmorei","Mysticeti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["Janjucetus hunderi","Mysticeti",26,27,23.9,25.45,26,27,23.9,25.45,"single","Fitzgerald (2006)","Jan Juc Formation","Australia"]
["Mammalodon colliveri","Mysticeti",25,25.7,23.9,24.799999999999997,24.8,25.7,23.9,24.799999999999997,"multiple","Fitzgerald (2010)","Jan Juc Formation","Australia"]
["Micromysticetus rothauseni","Mysticeti",30,30,29,29.5,27,28,26,27,"multiple","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Ashley and Chandler Bridge Formations","South Carolina"]
["Parabalaenoptera baulinensis","Mysticeti",6,6.8,6,6.4,6,6.8,6,6.4,"single","Zeigler et al. (1997)","Santa Cruz Mudstone","California","paleobiology database"]
["Pelocetus calvertensis","Mysticeti",14,14.5,14,14.25,13,13.2,13,13.1,"multiple","Kidwell (1997); Browning et al. (2006)","zones 13-17, Calvert Formation","Maryland, Virginia","paleobiology database"]
["Agorophius pygmaeus","Odontoceti",30,30,29,29.5,27,28,26,27,"multiple","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Ashley and Chandler Bridge Formations","South Carolina"]
["Albireo whistleri","Odontoceti",7,8,6,7,6.8,8,6,7,"multiple","Barnes  (2008)","Almejas Formation","Mexico","paleobiology database"]
["Archaeodelphis patrius","Odontoceti",26,28.4,23,25.7,26,28.4,23,25.7,"single","Uhen et al (2008)","Tiger Leap Formation?","South Carolina or Georgia?"]
["Atocetus nasalis","Odontoceti",9,11.6,7.2,9.4,8.8,11.6,7.2,9.4,"multiple","paleobiology database","Modelo and Monterey Formations","California","paleobiology database"]
["Brachydelphis mazeasi","Odontoceti",12,13,11,12,10,10,9,9.5,"multiple","Amiot et al. (2008)","Pisco Formation; BahÍa Inglesa, Chile","Peru, Chile","paleobiology database"]
["ChM PV2758","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV2761","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV2764","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV4178","Odontoceti",30,30,29,29.5,30,30,29,29.5,"single","Weems and Harris (2008)","Ashley Formation","South Carolina"]
["ChM PV4746","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV4802","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV4834","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV4961","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV5711","Odontoceti",27,28,26,27,27,28,26,27,"single","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Chandler Bridge Formation","South Carolina"]
["ChM PV5852","Odontoceti",30,30,29,29.5,30,30,29,29.5,"single","Weems and Harris (2008)","Ashley Formation","South Carolina"]
["Kentriodon pernix","Odontoceti",19,19.5,18.5,19,13,13.2,13,13.1,"multiple","Kidwell (1997); Browning et al. (2006)","zones 3-14, Calvert Formation","Maryland, Virginia","paleobiology database"]
["Ninoziphius platyrostris","Odontoceti",5,5,5,5,4.8,5,5,5,"multiple","Amiot et al. (2008)","Sacaco Sud, Pisco Formation","Peru","paleobiology database"]
["Notocetus vanbenedeni","Odontoceti",22,23,20,21.5,21.8,23,20,21.5,"multiple","del Rio (2004)","Monte Leon Formation","Argentina","paleobiology database"]
["Orycterocetus crocodilinus","Odontoceti",16,16.2,15.8,16,12,11.6,7.2,9.4,"multiple","Kidwell (1997); Browning et al. (2006)","zones 10-18, Calvert Formation; ","Maryland, Virginia, Belgium, France","paleobiology database; Lambert (2008)"]
["Parapontoporia sternbergi","Odontoceti",3,4,2,3,2.8,4,2,3,"multiple","Uhen et al (2008)","San Diego Formation","California","paleobiology database"]
["Parapontoporia wilsoni","Odontoceti",5,5.5,5.3,5.4,5,5.5,5.3,5.4,"single","Powell et al (2007)","Purisima Formation","California","paleobiology database"]
["Patriocetus kazakhstanicus","Odontoceti",27,28,26,27,27,28,26,27,"single","Dubrovo and Sanders (2000)","Segendyk Member  of Karaginskaya Formation","Kazakhstan"]
["Pliopontos littoralis","Odontoceti",5,5,5,5,4.8,5,5,5,"multiple","Amiot et al. (2008)","Sacaco Sud, Pisco Formation","Peru","paleobiology database"]
["Prosqualodon davidis","Odontoceti",23,24,21,22.5,23,24,21,22.5,"single","Fitzgerald (2004)","Fossil Bluff Sandstone","Tasmania, Australia","paleobiology database"]
["Simocetus rayi","Odontoceti",32,34,30.5,32.25,32,34,30.5,32.25,"single","Prothero (2003)","Alsea Formation","Oregon"]
["Squalodon calvertensis","Odontoceti",19,19.5,18.5,19,13,13.2,13,13.1,"multiple","Kidwell (1997); Browning et al. (2006)","zones 3-14, Calvert Formation, Pungo River Formation","Delaware, Maryland, North Carolina, Virginia","paleobiology database"]
["Squaloziphius emlongi","Odontoceti",22,23,20,21.5,22,23,20,21.5,"single","Prothero et al (2008)","Clallam Formation","Washington","paleobiology database"]
["Waipatia maerewhenua","Odontoceti",25,26,24,25,25,26,24,25,"single","Fordyce (1994)","Maerewhenua Member of Otekaikae Limestone","New Zealand"]
["Xenorophus sloanii","Odontoceti",30,30,29,29.5,30,30,29,29.5,"single","Weems and Harris (2008)","Ashley Formation","South Carolina"]
["Xenorophus sp.","Odontoceti",30,30,29,29.5,27,28,26,27,"multiple","Sanders and Barnes, 2002; Weems and Harris (2008); Harris et al. (2008)","Ashley and Chandler Bridge Formations","South Carolina"]
["Xiphiacetus bossi","Odontoceti",19,19.5,18.5,19,13,13.2,13,13.1,"multiple","Kidwell (1997); Browning et al. (2006)","zones 3-14, Calvert Formation; Antwerpen Sands Member of Berchem Formation","Maryland, Virginian, Belgium","paleobiology database; Lambert (2005)"]
["Zarhachis flagellator","Odontoceti",19,19.5,18.5,19,17,17.2,18,17.6,"multiple","Kidwell (1997); Browning et al. (2006)","zones 3-6, Calvert Formation","Maryland, Delaware","paleobiology database"]
["Georgiacetus vogtlensis","stem cetacean",41,42.4,39.7,41.05,41,42.4,39.7,41.05,"single","Hulbert et al. (1998); Gradstein et al. (2004)","\"Blue Bluff Unit\" of Santee Limestone; Lisbon Formation","Georgia, Alabama","Uhen (2008)"]
["Zygorhiza kochii","stem cetacean",38,39,36.5,37.75,35,35.2,33.9,34.55,"multiple","Daly (1999); Dockery (1998); Miller et al. (2008) ","Moody's Branch Formation, Yazoo Formation, Clinchfield Formation","Arkansas, Mississippi, Louisiana. Alabama, Georgia","paleobiology database"]
[]
[]
["Supplementary Table 2: Details and References for ages and distribution of all OTUs. The data presented here was used to develop the coding scheme for the stratigraphic character."]

{"sheet":"Table S3","index":2,"n_rows":14,"n_cols":12,"rows_kept":14,"flags":["formulas_cached_only"]}
[{"$nulls":6},"Stratigraphic Character ..."]
["Analysis","Analysis Name","Molecular Partition","Bayesian Scaffold","k value","Figure of tree or consensus","Maximum length ","Minimum length","Actual length","MSM*","p value","GER"]
["I","\"Parsimony\"","Included","No","NA","Figure 4",2019,41,354,0.11581920903954802,0.001,0.8417593528816987]
["I","\"Parsimony\"","Included","No","NA","Figure 4",2019,41,354,0.11581920903954802,0.001,0.8417593528816987]
["II","\"Bayesian Constraint\"","Excluded","Yes",3,"Figure 5",2019,41,369,0.1111111111111111,0.001,0.8341759352881699]
["II","\"Bayesian Constraint\"","Excluded","Yes",3,"Figure 5",2019,41,369,0.1111111111111111,0.001,0.8341759352881699]
["II","\"Bayesian Constraint\"","Excluded","Yes",3,"Figure 5",2019,41,369,0.1111111111111111,0.001,0.8341759352881699]
["III","none","Excluded","No",3,"Suppl. Figure 1",2019,41,384,0.10677083333333333,0.001,0.826592517694641]
["IV","none","Excluded","No","NA","Suppl. Figure 2",2019,41,357,0.11484593837535013,0.001,0.840242669362993]
["IV","none","Excluded","No","NA","Suppl. Figure 2",2019,41,357,0.11484593837535013,0.001,0.840242669362993]
["IV","none","Excluded","No","NA","Suppl. Figure 2",2019,41,357,0.11484593837535013,0.001,0.840242669362993]
["IV","none","Excluded","No","NA","Suppl. Figure 2",2019,41,357,0.11484593837535013,0.001,0.840242669362993]
[]
["Supplementary Table 3: Results of analyses that measure the MSM*, GER, and the statistical significance of the former on trees from analyses conducted in the present study. The stratigraphic character is based on the codings from Table 1 (see main text of paper)."]

{"sheet":"Table S4","index":3,"n_rows":37,"n_cols":12,"rows_kept":37,"flags":["formulas_cached_only"]}
[]
[null,"Taxon in Crown","Closest Extant Taxon when taxon in column B is inside crown","Shortest tree length for entire matrix","Shortest tree length with taxon in crown Odontoceti","Topology of tree described in column E","Difference between lengths in D and E","Standardized Tree Length","Templeton P value, 1 MPT","Templeton P value, 2nd MPT","Winning Sites P value, 1MPT","Winning Sites P value, 2nd MPT"]
["Odontocetes","Agorophius pygmaeus","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"Archaeodelphis patrius","Delphinida + Ziphiidae + Platanistidae",4108107,4109736,"B",1629,16.29,0.2846,0.2692,0.0759,0.0967]
[null,"Patriocetus kazakhstanicus","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"ChM PV4802","Delphinida + Ziphiidae + Platanistidae",4108107,4108634,"C",527,5.27,0.5056,0.5047,0.2183,0.2566]
[null,"ChM PV4961","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"Waipatia maerewhenua","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"Waipatia maerewhenua","Platanista",4108107,4109490,"D",1383,13.83,0.152,0.168,0.1176,0.0961]
[null,"Xenorophus sloanii","Delphinida + Ziphiidae + Platanistidae",4108107,4109736,"B",1629,16.29,0.2846,0.2692,0.0759,0.0967]
[null,"Simocetus rayi","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"ChM PV2764","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"ChM PV2761","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"ChM PV5852","Delphinida + Ziphiidae + Platanistidae",4108107,4109132,"A",1025,10.25,0.4141,0.4348,0.0512,0.0512]
[null,"ChM PV4746","Delphinida  ",4108107,4109260,"E",1153,11.53,0.1831,0.1848,0.0452,0.062]
[null,"ChM PV4746","Delphinida",4108107,4109260,"F",1153,11.53,0.1965,0.1831,0.036,0.0452]
[null,"ChM PV4178","Delphinida",4108107,4109253,"L",1146,11.46,0.1643,0.1833,0.0302,0.0255]
[null,"ChM PV5711","Delphinida + Ziphiidae + Platanistidae",4108107,4109736,"B",1629,16.29,0.2846,0.2692,0.0759,0.0967]
[null,"ChM PV4834","Delphinida + Ziphiidae + Platanistidae",4108107,4109736,"B",1629,16.29,0.2846,0.2692,0.0759,0.0967]
[null,"ChM PV2758","Delphinida + Ziphiidae + Platanistidae",4108107,4109736,"B",1629,16.29,0.2846,0.2692,0.0759,0.0967]
[null,"Xenorophus sp.","Delphinida + Ziphiidae + Platanistidae",4108107,4109736,"B",1629,16.29,0.2846,0.2692,0.0759,0.0967]
[]
[{"$nulls":4},"Shortest tree length with taxon in crown Mysticeti"]
["Mysticetes","Aetiocetus cotylalveus","Caperea + Balaenopteroidea",4108107,4109479,"G",1372,13.72,0.0071,0.0076,0.0025,0.0036]
[null,"Chonecetus goedertorum","Caperea + Balaenopteroidea",4108107,4109807,"H",1700,17,0.0033,0.0026,0.0008,0.0005]
[null,"Eomysticetus whitmorei","Balaenidae",4108107,4109675,"I",1568,15.68,0.1212,0.1146,0.0172,0.0172]
[null,"Micromysticetus rothauseni","Caperea + Balaenopteroidea",4108107,4109526,"J",1419,14.19,0.0029,0.0028,0.0009,0.0015]
[null,"ChM PV4745","Balaenidae",4108107,4110191,"K",2084,20.84,0.0012,0.0011,0.001,0.0015]
[null,"ChM PV5720","Balaenidae",4108107,4110191,"K",2084,20.84,0.0012,0.0011,0.001,0.0015]
[null,"Mammalodon colliveri","Plicogulae + Dirocetus + Pelocetus",4108107,4110197,"M",2090,20.9,0.0036,0.0044,0.0016,0.0012]
[null,"Mammalodon colliveri","Plicogulae + Dirocetus + Pelocetus",4108107,4110197,"N",2090,20.9,0.0055,0.0065,0.0021,0.0016]
[null,"Mammalodon colliveri","Plicogulae + Dirocetus + Pelocetus",4108107,4110197,"O",2090,20.9,0.0045,0.0054,0.0019,0.0014]
[null,"Janjucetus hunderi","Plicogulae + Dirocetus + Pelocetus",4108107,4110197,"M",2090,20.9,0.0036,0.0044,0.0016,0.0012]
[null,"Janjucetus hunderi","Plicogulae + Dirocetus + Pelocetus",4108107,4110197,"N",2090,20.9,0.0055,0.0065,0.0021,0.0016]
[null,"Janjucetus hunderi","Plicogulae + Dirocetus + Pelocetus",4108107,4110197,"O",2090,20.9,0.0045,0.0054,0.0019,0.0014]
[]
["Supplementary Table 4: Details on the shortest trees that place one or more Oligocene taxa either inisde Odontoceti or Mysticeti. Templeton and Winning sites tests are done on each suboptimal topology and are calculated with reference to each of the two most parsimonious trees. These analyses are based on a parsimony analysis of the entire molecular plus morphology matrix. The length of the shortest trees given in D are displayed as a consensus in Fig. 5 of the main text. Tests that are significant at p < 0.05 have cells filled in black, whereas those significant at p < 0.10 are in grey. MPT: most parsimonious tree."]