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["Additional file 9 – Y-chromosome J1 sub-haplogroups variance, divergence and expansion times based on six(a) STR loci."]
["Population/Region","N",null,"Hg J1-M267*",{"$nulls":3},"J1e-Page8 ",{"$nulls":5},"Reference"]
[{"$nulls":3},"N of Chr.","Mean YSTR variance","Divergence  time(b)±SD kya",null,"N of Chrm.","Mean YSTR Variance","Divergence time(b)±SD","Expansion time(c) (95% CI) Mean        Median"]
["Turkish/Area 4 ",82,null,5,0.867,"27.8 ± 9.4",null,5,0.367,"12.1 ± 4.0",{"$nulls":3},"[1]"]
["Turkish/Areas 6,5",76,null,0," -",null,null,7,0.294,"9.5 ± 6.5",{"$nulls":3},"[1]"]
["Turkish/Area 3",83,null,5,0.4,"14.5 ± 7.5",null,3," -",{"$nulls":4},"[1]"]
["Turkish/Area 1 ",52,null,1," -",null,null,7,0.357,"13.8 ± 3.7",{"$nulls":3},"[1]"]
["Turkish/Area 7",90,null,3," -",null,null,2," -",{"$nulls":4},"[1]"]
["Turkish/Area 9",81,null,1," -",null,null,5,{"v":0.15,"d":"0.150"},"6.0 ± 2.2",{"$nulls":3},"[1]"]
["Assyrian/NE Syria,  Iraq,  Iran, Turkey",114,null,12,0.183,"7.5 ± 4.2",null,7,0.262,"10.4 ± 5.2",{"$nulls":3},"[1]"]
["Iraqi Kurd",93,null,4," -",null,null,7,0.325,"13.8 ± 6.5",{"$nulls":3},"[1]"]
["Iraqi ",154,null,7,0.144,"6.4 ± 2.5",null,41,0.154,"5.9 ± 2.0","8.4 (1.9-20.1)","6.6 (1.7-17.9)",null,"[Present study]"]
["Iraqi/Marsh Arab ",143,null,10,{"v":0.17,"d":"0.170"},"7.6 ± 2.5",null,104,0.118,"4.5 ± 2.6","4.8 (0.7-16.1)","3.5 (0.6-14.2)",null,"[Present study]"]
["Iraqi/Nassiriya",56,null,1," -",null,null,14,0.153,"5.6 ± 2.9",{"$nulls":3},"[1]"]
["Iranian/S-West ",290,null,2," -",null,null,18,0.157,"5.5 ± 2.0","8.1 (1.3-22.3)","5.9 (1.1-19.3)",null,"[Present study, unpublished data]"]
["Syrian ",266,null,4," -",null,null,68,0.221,"8.6 ± 2.9","9.8 (1.8-25.6)","7.3 (1.6-22.3)",null,"[1]"]
["Jordanian",76,null,0," -",null,null,35,0.234,"9.3 ± 2.8","11.4 (2.2-30.2)","8.4 (2.0-26.4)",null,"[1]"]
["Palestinian",65,null,0," -",null,null,16,0.206,"7.5 ± 3.7",{"$nulls":3},"[1]"]
["Jewish",117,null,0," -",null,null,15,0.149,"5.2 ± 2.6",{"$nulls":3},"[Present study]"]
["Negev Bedouin",28,null,1," -",null,null,18,0.099,"4.0 ± 1.9",{"$nulls":3},"[1]"]
["Kuwaitian ",53,null,1," -",null,null,16,0.221,"11.0 ± 9.6",{"$nulls":3},"[Present study]"]
["Qatarian",72,null,1," -",null,null,41,0.149,"6.5 ± 2.2","6.6 (0.7-17.5)","5.1 (0.6-15.5)",null,"[1]"]
["Emirati",164,null,0," -",null,null,57,0.186,"7.7 ± 2.1","8.9 (1.4-23.4)","6.6 (1.3-20.7)",null,"[1]"]
["Omanian",121,null,1," -",null,null,45,{"v":0.31,"d":"0.310"},"13.3 ± 4.4",{"$nulls":3},"[1]"]
["Yemeni",62,null,3," -",null,null,42,0.205,"8.8 ± 3.7",{"$nulls":3},"[1]"]
["Egyptian",147,null,2," -",null,null,29,0.226,"8.5 ± 2.6",{"$nulls":3},"[1]"]
["Tunisian",73,null,1," -",null,null,19,0.158,"5.9 ± 1.2",{"$nulls":3},"[Present study]"]
["Algerian",20,null,1," -",null,null,6,0.189,"6.0 ± 4.9",{"$nulls":3},"[Present study]"]
["Ethiopian/Amhara",48,null,5,{"v":0.1,"d":"0.100"},"3.6 ± 1.6",null,10,{"v":0.27,"d":"0.270"},"9.5 ± 2.7",{"$nulls":3},"[Present study]"]
["SudaneseArab",35,null,0," -",null,null,26,0.091,"3.5 ± 1.9",{"$nulls":3},"[2]"]
["Italian",555,null,4," -",null,null,13,0.252,"9.5 ± 3.6",{"$nulls":3},"[Present study]"]
["Balkan/Central",310,null,1," -",null,null,7,0.171,"8.1 ± 2.7",{"$nulls":3},"[3, Present study]"]
[]
["(a) DYS19, DYS389I, DYS389II, DYS390, DYS391 and DYS392. "]
["(b) Divergence time according to [4, 5]."]
["(c) Expansion time was estimated only in the populations involved in the J1-Page08 expansion as revealed by the network illustrated in figure 6, through the BATWING procedure [6], assuming an initial constant population size followed by expansion at time alfa with a growth rate of beta. Alfa and beta parameters were as in Tofanelli et al. [2]. For both methods the effective mutation rate and a generation time of 25 years [4] were used."]
["For both methods the effective mutation rate and a generation time of 25 years [4] were used."]
[]
["References for Additional file 9"]
["1. Chiaroni J, King RJ, Myres NM, Henn BM, Ducourneau A, Mitchell MJ, Boetsch G, Sheikha I, Lin AA, Nik-Ahd M, Ahmad J, Lattanzi F, Herrera RJ, Ibrahim ME, Brody A, Semino O, Kivisild T, Underhill PA:. The emergence of Y-chromosome haplogroup J1e among Arabic-speaking populations. Eur J Hum Genet 2010, 18:348-353."]
["2. Tofanelli S, Ferri G, Bulayeva K, Caciagli L, Onofri V, Taglioli L, Bulayev O, Boschi I, Alù M, Berti A, Rapone C, Beduschi G, Luiselli D, Cadenas AM, Awadelkarim KD, Mariani-Costantini R, Elwali NE, Verginelli F, Pilli E, Herrera RJ, Gusmão L, Paoli G, Capelli C: J1-M267 Y lineage marks climate-driven pre-historical human displacements. Eur J Hum Genet 2009, 17:1520-1524. "]
["3. Battaglia V, Fornarino S, Al-Zahery N, Olivieri A, Pala M, Myres NM, King RJ, Rootsi S, Marjanovic D, Primorac D, Hadziselimovic R, Vidovic S, Drobnic K, Durmishi N, Torroni A, Santachiara-Benerecetti AS, Underhill PA, Semino O: Y-chromosomal evidence of the cultural diffusion of agriculture in southeast Europe. Eur J Hum Genet 2009, 17:820-830."]
["4. Zhivotovsky LA, Underhill PA, Cinnioğlu C, Kayser M, Morar B, Kivisild T, Scozzari R, Cruciani F, Destro-Bisol G, Spedini G, Chambers GK, Herrera RJ, Yong KK, Gresham D, Tournev I, Feldman MW, Kalaydjieva L: The effective mutation rate at Y chromosome short tandem repeats, with application to human population divergence time. Am J Hum Genet 2004, 74:50-61."]
["5. Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, Chow CT, Lin AA, Mitra M, Sil SK, Ramesh A, Usha Rani MV, Thakur CM, Cavalli-Sforza LL, Majumder PP, Underhill PA: Polarity and temporality of high resolution Y chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 2006, 78:202-221."]
["6. Wilson I, Weale D, Balding M: Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities.  J Roy Statist Soc A 2003, 166:155-188."]