>Co-localized category: BESs from the same BAC each had a match to the same chromosome of V. vinifera genome(12 BAC ends pairs corresponding to 17 significant alignments) Oak BES ID1 and Oak BES ID 2 represent a BAC ends pair column 1: Oak BES ID1 column 2: V.vinifera chromosome where BES ID1 is aligned column 3: Oak BES ID2 column 4: V.vinifera chromosome where BES ID2 is aligned TI0AQRHB1YF10FM1 VVI18 TI0AQRHB1YF10RM1 VVI18 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI05 TI0AQRHB21YP23RM1 VVI05 TI0AQRHB33YA09FM2 VVI10 TI0AQRHB33YA09RM2 VVI10 TI0AQRHB3YB05FM1 VVI18 TI0AQRHB3YB05RM1 VVI18 TI0AQRHB5YP13FM1 VVI02 TI0AQRHB5YP13RM1 VVI02 TI0AQRHB6YM07FM1 VVI01 TI0AQRHB6YM07RM1 VVI01 TI0AQRHB6YM07FM1 VVI02 TI0AQRHB6YM07RM1 VVI02 TI0AQRHB8YC21FM1 VVI09 TI0AQRHB8YC21RM1 VVI09 >Colinear category: BESs from the same BAC each had a match to the same chromosome of V. vinifera genome within a distance of 15 to 250 kb of each other in the correct orientation with respect to each other (1 BAC ends pair corresponding to 2 significant alignments). Oak BES ID1 and Oak BES ID 2 represent a BAC ends pair column 1: Oak BES ID1 column 2: V.vinifera chromosome where BES ID1 is aligned column 3: Oak BES ID2 column 4: V.vinifera chromosome where BES ID2 is aligned column 5: start coordinate of the alignment of BES ID1 on the V. vinifera genome column 6: stop coordinate of the alignment of BES ID 1 on the V. vinifera genome column 7: start coordinate of the alignment of BES ID2 on the V. vinifera genome column 8: stop coordinate of the alignment of BES ID2 on the V. vinifera genome column 9: distance between the paired matches (bp) TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 15971460 15971672 15878615 15878283 92845 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 15971460 15971672 15940969 15940638 30491 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 15971460 15971672 15996855 15996523 -25395 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 15971759 15971923 15878615 15878283 93144 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 15971759 15971923 15940969 15940638 30790 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 15971759 15971923 15996855 15996523 -25096 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 16040046 16040207 15878615 15878283 161431 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 16040046 16040207 15940969 15940638 99077 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 16040046 16040207 15971295 15971042 68751 TI0AQRHB21YP23FM1 VVI02 TI0AQRHB21YP23RM1 VVI02 16040046 16040207 15996855 15996523 43191 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15878615 15878283 15971460 15971672 -92845 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15878615 15878283 15971759 15971923 -93144 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15878615 15878283 16040046 16040207 -161431 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15940969 15940638 15971460 15971672 -30491 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15940969 15940638 15971759 15971923 -30790 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15940969 15940638 16040046 16040207 -99077 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15971295 15971042 16040046 16040207 -68751 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15996855 15996523 15971460 15971672 25395 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15996855 15996523 15971759 15971923 25096 TI0AQRHB21YP23RM1 VVI02 TI0AQRHB21YP23FM1 VVI02 15996855 15996523 16040046 16040207 -43191