MEME version 3.5.7 (Release date: 2007-12-17 16:56:19 -0800 (Mon, 17 Dec 2007))
For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.
This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net.
If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
DATAFILE= secondpass.twoline.faa ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ gi|157691589|BPUM_0807|Y 1.0000 200 gi|163940708|BcerKBAB4_2 1.0000 35 gi|239827399|GWCH70_2031 1.0000 831 gi|229916702|EAT1b_0975| 1.0000 180 gi|229917217|EAT1b_1492| 1.0000 101 gi|56964615|ABC2851|YP_1 1.0000 220 gi|49477012|BT9727_0859| 1.0000 199 gi|261409914|GYMC10_6143 1.0000 524 gi|56963278|ABC1513|YP_1 1.0000 151 gi|261407639|GYMC10_3840 1.0000 582 gi|163119564|BL05276|YP_ 1.0000 82 gi|169827149|Bsph_1579|Y 1.0000 271 gi|15615679|BH3117|NP_24 1.0000 230 gi|52080136|BL02256|YP_0 1.0000 259 gi|52082396|BL00940|YP_0 1.0000 177 gi|295696140|Btus_1522|Y 1.0000 242 gi|296504786|BMB171_C395 1.0000 375 gi|154686587|RBAM_021560 1.0000 255 gi|288555607|BpOF4_12995 1.0000 235 gi|295702333|BMD_0117|YP 1.0000 216 gi|301056170|BACI_c46590 1.0000 181 gi|295695225|Btus_0554|Y 1.0000 209 gi|239826640|GWCH70_1138 1.0000 254 gi|169829522|Bsph_4082|Y 1.0000 180 gi|52783954|BLi00116|YP_ 1.0000 223 gi|138895828|GTNG_2187|Y 1.0000 181 gi|154685119|RBAM_006640 1.0000 165 gi|15613235|BH0672|NP_24 1.0000 285 gi|296502433|BMB171_C159 1.0000 112 gi|301055395|BACI_c38600 1.0000 238 gi|52786504|BLi02769|YP_ 1.0000 241 gi|169828833|Bsph_3367|Y 1.0000 172 gi|296501752|BMB171_C091 1.0000 206 gi|169828654|Bsph_3171|Y 1.0000 154 gi|261409324|GYMC10_5549 1.0000 256 gi|56964009|ABC2244|YP_1 1.0000 254 gi|15615785|BH3223|NP_24 1.0000 242 gi|169827019|Bsph_1443|Y 1.0000 204 gi|295695669|Btus_1025|Y 1.0000 206 gi|15613939|BH1376|NP_24 1.0000 372 gi|229917220|EAT1b_1495| 1.0000 186 gi|261405575|GYMC10_1726 1.0000 182 gi|212638647|Aflv_0804|Y 1.0000 129 gi|297529299|GC56T3_0955 1.0000 245 gi|301053373|BACI_c17850 1.0000 160 gi|296503062|BMB171_C223 1.0000 177 gi|301053967|BACI_c23980 1.0000 289 gi|261419324|GYMC61_1900 1.0000 239 gi|261409365|GYMC10_5592 1.0000 229 gi|67078088|pE33L466_021 1.0000 323 gi|261409537|GYMC10_5766 1.0000 214 gi|23100228|OB2773|NP_69 1.0000 188 gi|239826355|GWCH70_0832 1.0000 245 gi|297530579|GC56T3_2307 1.0000 251 gi|261404502|GYMC10_0633 1.0000 176 gi|295706363|BMD_4258|YP 1.0000 239 gi|288556053|BpOF4_15235 1.0000 176 gi|15616444|BH3882|NP_24 1.0000 154 gi|15614178|BH1615|NP_24 1.0000 176 gi|295695629|Btus_0984|Y 1.0000 246 gi|297530706|GC56T3_2446 1.0000 239 gi|296501706|BMB171_C086 1.0000 176 gi|295696809|Btus_2226|Y 1.0000 195 gi|295695448|Btus_0783|Y 1.0000 379 gi|261405990|GYMC10_2143 1.0000 251 gi|23098557|OB1102|NP_69 1.0000 242 gi|301055076|BACI_c35350 1.0000 177 gi|169830054|Bsph_4638|Y 1.0000 215 gi|172056123|Exig_0079|Y 1.0000 213 gi|138896056|GTNG_2419|Y 1.0000 375 gi|56965809|ABC4051|YP_1 1.0000 179 gi|169829726|Bsph_4295|Y 1.0000 261 gi|169826679|Bsph_1097|Y 1.0000 180 gi|52787569|BLi03891|YP_ 1.0000 201 gi|15613848|BH1285|NP_24 1.0000 235 gi|297529579|GC56T3_1250 1.0000 181 gi|52080250|BL01246|YP_0 1.0000 254 gi|294499031|BMQ_2272|YP 1.0000 159 gi|229918653|EAT1b_2940| 1.0000 256 gi|16079737|BSU26840|NP_ 1.0000 176 gi|261417590|GYMC61_0090 1.0000 238 gi|169828091|Bsph_2568|Y 1.0000 177 gi|56961818|ABC0036|YP_1 1.0000 246 gi|294501280|BMQ_4542|YP 1.0000 377 gi|15612678|BH0115|NP_24 1.0000 217 gi|23098724|OB1269|NP_69 1.0000 174 gi|52785627|BLi01868|YP_ 1.0000 254 gi|261406063|GYMC10_2217 1.0000 197 gi|297585316|Bsel_3049|Y 1.0000 175 gi|52078665|BL02699|YP_0 1.0000 187 gi|23097558|OB0103|NP_69 1.0000 217 gi|294499631|BMQ_2875|YP 1.0000 176 gi|297528524|GC56T3_0148 1.0000 190 gi|169827296|Bsph_1728|Y 1.0000 173 gi|154685410|RBAM_009760 1.0000 163 gi|169826467|Bsph_0879|Y 1.0000 182 gi|261406207|GYMC10_2363 1.0000 178 gi|23099399|OB1944|NP_69 1.0000 380 gi|261406707|GYMC10_2870 1.0000 200 gi|301054766|BACI_c32210 1.0000 183 gi|154684616|RBAM_001230 1.0000 218 gi|154685892|RBAM_014590 1.0000 173 gi|301056717|BACI_c52440 1.0000 156 gi|301054926|BACI_c33840 1.0000 240 gi|169826213|Bsph_0618|Y 1.0000 182 gi|56964116|ABC2351|YP_1 1.0000 237 gi|296503330|BMB171_C249 1.0000 228 gi|229917493|EAT1b_1768| 1.0000 173 gi|23099294|OB1839|NP_69 1.0000 250 gi|297582861|Bsel_0539|Y 1.0000 268 gi|261417856|GYMC61_0374 1.0000 252 gi|295705020|BMD_2904|YP 1.0000 176 gi|296504831|BMB171_C400 1.0000 196 gi|295695806|Btus_1170|Y 1.0000 238 gi|295696440|Btus_1834|Y 1.0000 256 gi|301054311|BACI_c27530 1.0000 228 gi|261405623|GYMC10_1774 1.0000 377 gi|301051831|BACI_c01200 1.0000 218 gi|297582431|Bsel_0096|Y 1.0000 184 gi|261405539|GYMC10_1690 1.0000 233 gi|261419325|GYMC61_1901 1.0000 259 gi|138895880|GTNG_2239|Y 1.0000 252 gi|295706259|BMD_4154|YP 1.0000 253 gi|297582645|Bsel_0319|Y 1.0000 166 gi|261405165|GYMC10_1312 1.0000 180 gi|23100115|OB2660|NP_69 1.0000 187 gi|239826532|GWCH70_1030 1.0000 239 gi|52784408|BLi00595|YP_ 1.0000 165 gi|15615117|BH2554|NP_24 1.0000 261 gi|261407370|GYMC10_3567 1.0000 183 gi|218896653|BCG9842_B36 1.0000 87 gi|157694260|BPUM_3514|Y 1.0000 176 gi|261406097|GYMC10_2252 1.0000 204 gi|23099454|OB1999|NP_69 1.0000 234 gi|52081127|BL02107|YP_0 1.0000 241 gi|288554248|BpOF4_06145 1.0000 170 gi|172058539|Exig_2532|Y 1.0000 181 gi|157691684|BPUM_0902|Y 1.0000 163 gi|172057862|Exig_1853|Y 1.0000 257 gi|229917375|EAT1b_1650| 1.0000 213 gi|15613183|BH0620|NP_24 1.0000 177 gi|261419010|GYMC61_1575 1.0000 193 gi|239827600|GWCH70_2250 1.0000 250 gi|56962021|ABC0239|YP_1 1.0000 187 gi|288556276|BpOF4_16370 1.0000 184 gi|294509114|BMQ_pBM5002 1.0000 176 gi|294501013|BMQ_4269|YP 1.0000 259 gi|261404792|GYMC10_0928 1.0000 216 gi|297582696|Bsel_0370|Y 1.0000 187 gi|169829980|Bsph_4562|Y 1.0000 181 gi|157691562|BPUM_0780|Y 1.0000 188 gi|172057556|Exig_1543|Y 1.0000 175 gi|23098930|OB1475|NP_69 1.0000 239 gi|261405674|GYMC10_1825 1.0000 260 gi|295702393|BMD_0187|YP 1.0000 187 gi|296504397|BMB171_C356 1.0000 259 gi|138894662|GTNG_0992|Y 1.0000 239 gi|52786447|BLi02712|YP_ 1.0000 373 gi|297529524|GC56T3_1195 1.0000 252 gi|52080819|BL00651|YP_0 1.0000 194 gi|297582547|Bsel_0215|Y 1.0000 185 gi|218848158|BCG9842_003 1.0000 295 gi|261406353|GYMC10_2510 1.0000 406 gi|23100811|OB3356|NP_69 1.0000 195 gi|157691239|BPUM_0446|Y 1.0000 262 gi|157690881|BPUM_0083|Y 1.0000 218 gi|261404258|GYMC10_0386 1.0000 299 gi|297531625|GC56T3_3410 1.0000 256 gi|295695216|Btus_0545|Y 1.0000 186 gi|295702435|BMD_0229|YP 1.0000 264 gi|294498927|BMQ_2164|YP 1.0000 164 gi|261404968|GYMC10_1112 1.0000 308 gi|154685949|RBAM_015160 1.0000 260 gi|23097683|OB0228|NP_69 1.0000 187 gi|294509181|BMQ_pBM5009 1.0000 220 gi|295706676|BMD_4577|YP 1.0000 242 gi|52079432|BL02851|YP_0 1.0000 163 gi|261404314|GYMC10_0444 1.0000 170 gi|138896469|GTNG_2832|Y 1.0000 143 gi|157692422|BPUM_1642|Y 1.0000 77 gi|157690957|BPUM_0160|Y 1.0000 195 gi|56963560|ABC1795|YP_1 1.0000 254 gi|288555708|BpOF4_13500 1.0000 176 gi|296505675|BMB171_C484 1.0000 156 gi|23099768|OB2313|NP_69 1.0000 155 gi|172056208|Exig_0164|Y 1.0000 181 gi|295705661|BMD_3546|YP 1.0000 170 gi|218897389|BCG9842_B29 1.0000 37 gi|218235233|BCB4264_A18 1.0000 112 gi|261417650|GYMC61_0150 1.0000 190 gi|15616194|BH3632|NP_24 1.0000 320 gi|297528465|GC56T3_0089 1.0000 227 gi|157694452|BPUM_3710|Y 1.0000 164 gi|154684695|RBAM_002260 1.0000 187 gi|157693076|BPUM_2309|Y 1.0000 289 gi|296502728|BMB171_C189 1.0000 192 gi|157692810|BPUM_2042|Y 1.0000 202 gi|154686555|RBAM_021240 1.0000 194 gi|52079008|BL02208|YP_0 1.0000 263 gi|261407775|GYMC10_3981 1.0000 316 gi|52785264|BLi01499|YP_ 1.0000 251 gi|288553151|BpOF4_00625 1.0000 237 gi|296506459|BMB171_P007 1.0000 323 gi|52786234|BLi02495|YP_ 1.0000 255 gi|15615778|BH3216|NP_24 1.0000 193 gi|56963737|ABC1972|YP_1 1.0000 176 gi|52786190|BLi02449|YP_ 1.0000 194 gi|296503941|BMB171_C311 1.0000 235 gi|172056180|Exig_0136|Y 1.0000 187 gi|52080135|BL02255|YP_0 1.0000 239 gi|261408152|GYMC10_4361 1.0000 244 gi|172056869|Exig_0832|Y 1.0000 361 gi|301053658|BACI_c20780 1.0000 192 gi|23099037|OB1582|NP_69 1.0000 258 gi|172058807|Exig_2804|Y 1.0000 265 gi|288556282|BpOF4_16400 1.0000 178 gi|229917800|EAT1b_2078| 1.0000 266 gi|163119552|BL03682|YP_ 1.0000 373 gi|239827809|GWCH70_2471 1.0000 236 gi|52784380|BLi00560|YP_ 1.0000 264 gi|295696452|Btus_1846|Y 1.0000 261 gi|261409476|GYMC10_5703 1.0000 188 gi|154685948|RBAM_015150 1.0000 239 gi|301055785|BACI_c42620 1.0000 375 gi|295706482|BMD_4377|YP 1.0000 253 gi|52785509|BLi01750|YP_ 1.0000 239 gi|52785449|BLi01689|YP_ 1.0000 171 gi|157691378|BPUM_0588|Y 1.0000 181 gi|56963382|ABC1617|YP_1 1.0000 235 gi|296504398|BMB171_C356 1.0000 239 gi|294500640|BMQ_3893|YP 1.0000 166 gi|169829158|Bsph_3702|Y 1.0000 375 gi|52082452|BL01923|YP_0 1.0000 182 gi|52785510|BLi01751|YP_ 1.0000 259 gi|297584063|Bsel_1770|Y 1.0000 253 gi|23098931|OB1476|NP_69 1.0000 260 gi|296502978|BMB171_C214 1.0000 289 gi|294501329|BMQ_4591|YP 1.0000 242 gi|261418447|GYMC61_0982 1.0000 245 gi|261404205|GYMC10_0333 1.0000 162 gi|294497070|BMQ_0235|YP 1.0000 264 gi|288555754|BpOF4_13730 1.0000 372 gi|154686781|RBAM_023510 1.0000 373 gi|294501135|BMQ_4391|YP 1.0000 253 gi|154687094|RBAM_026660 1.0000 171 gi|52784792|BLi01020|YP_ 1.0000 163 gi|157693020|BPUM_2253|Y 1.0000 373 gi|15615924|BH3362|NP_24 1.0000 183 gi|295704098|BMD_1970|YP 1.0000 188 gi|261405228|GYMC10_1376 1.0000 172 gi|169827960|Bsph_2435|Y 1.0000 159 gi|301053341|BACI_c17530 1.0000 188 gi|294500554|BMQ_3807|YP 1.0000 224 gi|16080921|BSU38700|NP_ 1.0000 178 gi|296504567|BMB171_C373 1.0000 252 gi|138894925|GTNG_1263|Y 1.0000 173 gi|288553039|BpOF4_00065 1.0000 257 gi|297582430|Bsel_0095|Y 1.0000 214 gi|288554854|BpOF4_09205 1.0000 261 gi|23100547|OB3092|NP_69 1.0000 179 gi|154685755|RBAM_013220 1.0000 248 gi|261406734|GYMC10_2897 1.0000 191 gi|15615119|BH2556|NP_24 1.0000 237 gi|297582837|Bsel_0515|Y 1.0000 178 gi|15614101|BH1538|NP_24 1.0000 252 gi|30019875|BC1731|NP_83 1.0000 112 gi|229917320|EAT1b_1595| 1.0000 191 gi|23098703|OB1248|NP_69 1.0000 163 gi|295704351|BMD_2228|YP 1.0000 159 gi|301055830|BACI_c43070 1.0000 181 gi|239826131|GWCH70_0591 1.0000 186 gi|157693526|BPUM_2772|Y 1.0000 172 gi|15612826|BH0263|NP_24 1.0000 187 gi|52078593|BL03273|YP_0 1.0000 223 gi|288554775|BpOF4_08800 1.0000 187 gi|296500928|BMB171_C009 1.0000 219 gi|229916320|EAT1b_0589| 1.0000 364 gi|261409306|GYMC10_5531 1.0000 185 gi|138893768|GTNG_0089|Y 1.0000 216 gi|295694818|Btus_0134|Y 1.0000 221 gi|56420261|GK1726|YP_14 1.0000 161 gi|294497991|BMQ_1224|YP 1.0000 236 gi|296504096|BMB171_C326 1.0000 177 gi|261404455|GYMC10_0586 1.0000 166 gi|239827752|GWCH70_2414 1.0000 374 gi|52785094|BLi01326|YP_ 1.0000 167 gi|296505785|BMB171_C495 1.0000 175 gi|15613092|BH0529|NP_24 1.0000 261 gi|52784027|BLi00199|YP_ 1.0000 187 gi|138894663|GTNG_0993|Y 1.0000 264 gi|56963455|ABC1690|YP_1 1.0000 373 gi|56964115|ABC2350|YP_1 1.0000 261 gi|295703274|BMD_1138|YP 1.0000 163 gi|229916805|EAT1b_1078| 1.0000 147 gi|288555447|BpOF4_12185 1.0000 182 gi|294500913|BMQ_4167|YP 1.0000 253 gi|294500560|BMQ_3813|YP 1.0000 216 gi|52787848|BLi04171|YP_ 1.0000 189 gi|157692018|BPUM_1237|Y 1.0000 251 gi|295706362|BMD_4257|YP 1.0000 259 gi|42780194|BCE_1118|NP_ 1.0000 180 gi|301052754|BACI_c11460 1.0000 161 gi|261406105|GYMC10_2260 1.0000 163 gi|294497028|BMQ_0193|YP 1.0000 187 gi|301055569|BACI_c40400 1.0000 252 gi|152977630|Bcer98_3970 1.0000 183 gi|138893826|GTNG_0147|Y 1.0000 162 gi|239825735|GWCH70_0154 1.0000 183 gi|295705913|BMD_3805|YP 1.0000 216 gi|288553150|BpOF4_00620 1.0000 261 gi|296502401|BMB171_C156 1.0000 188 gi|52788043|BLi04371|YP_ 1.0000 285 gi|239826533|GWCH70_1031 1.0000 259 gi|23098085|OB0630|NP_69 1.0000 263 gi|294498777|BMQ_2014|YP 1.0000 188 gi|301052678|BACI_c10700 1.0000 177 gi|261406442|GYMC10_2604 1.0000 193 gi|295705907|BMD_3799|YP 1.0000 221 gi|138896107|GTNG_2470|Y 1.0000 237 gi|261408790|GYMC10_5011 1.0000 234 gi|154685132|RBAM_006770 1.0000 177 gi|67077986|pE33L466_010 1.0000 162 gi|138894489|GTNG_0819|Y 1.0000 246 gi|169827020|Bsph_1444|Y 1.0000 257 gi|52080075|BL02968|YP_0 1.0000 171 gi|169827905|Bsph_2380|Y 1.0000 172 gi|294496966|BMQ_0119|YP 1.0000 216 gi|239825676|GWCH70_0094 1.0000 216 gi|261404562|GYMC10_0696 1.0000 172 gi|297582968|Bsel_0647|Y 1.0000 185 gi|239827551|GWCH70_2200 1.0000 182 gi|218902444|BCAH820_132 1.0000 179 gi|152976319|Bcer98_2607 1.0000 242 gi|52080862|BL00778|YP_0 1.0000 255 gi|218232506|BCB4264_A54 1.0000 59 gi|56962590|ABC0816|YP_1 1.0000 261 gi|288556517|BpOF4_17595 1.0000 163 gi|169829956|Bsph_4538|Y 1.0000 157 gi|15614589|BH2026|NP_24 1.0000 179 gi|294500314|BMQ_3558|YP 1.0000 170 gi|23098753|OB1298|NP_69 1.0000 175 gi|169827282|Bsph_1714|Y 1.0000 195 gi|169829306|Bsph_3856|Y 1.0000 228 gi|288555440|BpOF4_12150 1.0000 168 gi|15614994|BH2431|NP_24 1.0000 256 gi|157692327|BPUM_1546|Y 1.0000 255 gi|52079036|BL05045|YP_0 1.0000 165 gi|154686064|RBAM_016310 1.0000 254 gi|261420836|GYMC61_3488 1.0000 256 gi|294497918|BMQ_1151|YP 1.0000 163 gi|261417657|GYMC61_0157 1.0000 375 gi|297583869|Bsel_1572|Y 1.0000 184 gi|297529352|GC56T3_1008 1.0000 375 gi|288554708|BpOF4_08465 1.0000 215 gi|301054038|BACI_c24720 1.0000 177 gi|297531020|GC56T3_2772 1.0000 193 gi|138897001|GTNG_3372|Y 1.0000 258 gi|52079892|BL03529|YP_0 1.0000 251 gi|154684976|RBAM_005070 1.0000 262 gi|157692208|BPUM_1427|Y 1.0000 259 gi|261406319|GYMC10_2476 1.0000 263 gi|157692844|BPUM_2076|Y 1.0000 255 gi|296501716|BMB171_C087 1.0000 257 gi|295696987|Btus_2417|Y 1.0000 188 gi|295703345|BMD_1209|YP 1.0000 236 gi|261404422|GYMC10_0553 1.0000 180 gi|295694956|Btus_0276|Y 1.0000 197 gi|154686834|RBAM_024040 1.0000 240 gi|56961915|ABC0133|YP_1 1.0000 220 gi|295705993|BMD_3885|YP 1.0000 167 gi|261405039|GYMC10_1184 1.0000 155 gi|261405673|GYMC10_1824 1.0000 240 gi|52082178|BL04030|YP_0 1.0000 201 gi|42779274|BCE_0193|NP_ 1.0000 114 gi|288555973|BpOF4_14835 1.0000 256 gi|301052635|BACI_c10250 1.0000 258 gi|261409947|GYMC10_6177 1.0000 162 gi|218905476|BCAH820_436 1.0000 100 gi|295706627|BMD_4528|YP 1.0000 377 gi|301055394|BACI_c38590 1.0000 289 gi|52079725|BL03831|YP_0 1.0000 167 gi|295696453|Btus_1847|Y 1.0000 242 gi|52787786|BLi04109|YP_ 1.0000 177 gi|42783741|BCE_4695|NP_ 1.0000 81 gi|261419446|GYMC61_2030 1.0000 251 gi|297584635|Bsel_2346|Y 1.0000 371 gi|295694973|Btus_0293|Y 1.0000 185 gi|169829988|Bsph_4570|Y 1.0000 187 gi|297530705|GC56T3_2445 1.0000 259 gi|301056831|BACI_c53580 1.0000 175 gi|52082644|BL00106|YP_0 1.0000 285 gi|261407955|GYMC10_4162 1.0000 262 gi|301054256|BACI_c26970 1.0000 176 gi|261407440|GYMC10_3639 1.0000 286 gi|297582728|Bsel_0402|Y 1.0000 181 gi|16078537|BSU14730|NP_ 1.0000 173 gi|294500199|BMQ_3443|YP 1.0000 177 gi|157692207|BPUM_1426|Y 1.0000 239 gi|261404261|GYMC10_0389 1.0000 177 gi|294501014|BMQ_4270|YP 1.0000 239 gi|138894766|GTNG_1100|Y 1.0000 253 gi|261417910|GYMC61_0428 1.0000 181 gi|261406462|GYMC10_2625 1.0000 197 gi|138894123|GTNG_0449|Y 1.0000 180 gi|295704249|BMD_2121|YP 1.0000 164 gi|217960836|BCAH187_A34 1.0000 872 gi|154685691|RBAM_012580 1.0000 170 gi|23097664|OB0209|NP_69 1.0000 170 gi|56419662|GK1127|YP_14 1.0000 239 gi|49186524|BAS3522|YP_0 1.0000 167 gi|56420843|GK2308|YP_14 1.0000 250 gi|218897485|BCG9842_B28 1.0000 177 gi|49186821|BAS3823|YP_0 1.0000 314 gi|161611198|GBAA2970|YP 1.0000 192 gi|255767137|BSU04730|NP 1.0000 262 gi|218901842|BCAH820_070 1.0000 185 gi|49478442|BT9727_3646| 1.0000 239 gi|118479803|BALH_4240|Y 1.0000 181 gi|218902920|BCAH820_180 1.0000 188 gi|49187552|BAS4558|YP_0 1.0000 181 gi|118479123|BALH_3533|Y 1.0000 289 gi|52143630|BCZK1605|YP_ 1.0000 160 gi|218232753|BCB4264_A21 1.0000 192 gi|163941644|BcerKBAB4_3 1.0000 239 gi|225862624|BCA_0684|YP 1.0000 185 gi|229604251|BAA_4924|YP 1.0000 181 gi|163938900|BcerKBAB4_0 1.0000 257 gi|229601980|BAA_3517|YP 1.0000 235 gi|229602836|BAA_1861|YP 1.0000 160 gi|229602282|BAA_3022|YP 1.0000 192 gi|49481307|BT9727_4032| 1.0000 373 gi|163940993|BcerKBAB4_3 1.0000 166 gi|218234226|BCB4264_A16 1.0000 179 gi|30263538|BA3649|NP_84 1.0000 169 gi|229603990|BAA_4316|YP 1.0000 252 gi|152976482|Bcer98_2771 1.0000 252 gi|222095431|BCQ_1771|YP 1.0000 188 gi|163941054|BcerKBAB4_3 1.0000 176 gi|229604408|BAA_2852|YP 1.0000 228 gi|47530932|GBAA5610|YP_ 1.0000 175 gi|163941815|BcerKBAB4_3 1.0000 252 gi|227813430|BAMEG_0833| 1.0000 167 gi|52141585|BCZK3662|YP_ 1.0000 289 gi|218899057|BCG9842_B12 1.0000 259 gi|118478833|BALH_3229|Y 1.0000 177 gi|49183986|BAS0964|YP_0 1.0000 206 gi|227817068|BAMEG_4554| 1.0000 373 gi|229601988|BAA_2511|YP 1.0000 289 gi|118475937|BALH_0169|Y 1.0000 164 gi|49186754|BAS3755|YP_0 1.0000 239 gi|30022159|BC4072|NP_83 1.0000 252 gi|218234749|BCB4264_A40 1.0000 239 gi|47529862|GBAA4566|YP_ 1.0000 237 gi|225866273|BCA_4403|YP 1.0000 373 gi|229604897|BAA_2557|YP 1.0000 177 gi|49188088|BAS5102|YP_0 1.0000 146 gi|222094400|BCQ_0714|YP 1.0000 185 gi|52141944|BCZK3297|YP_ 1.0000 177 gi|218234415|BCB4264_A46 1.0000 181 gi|118477262|BALH_1573|Y 1.0000 160 gi|49479940|BT9727_1587| 1.0000 188 gi|229604778|BAA_1124|YP 1.0000 177 gi|49187190|BAS4194|YP_0 1.0000 373 gi|218897120|BCG9842_B31 1.0000 192 gi|118476332|BALH_0588|Y 1.0000 185 gi|217960990|BCAH187_A36 1.0000 177 gi|218901372|BCAH820_019 1.0000 163 gi|47529811|GBAA4515|YP_ 1.0000 373 gi|47530811|GBAA5493|YP_ 1.0000 146 gi|227815388|BAMEG_2801| 1.0000 160 gi|118479762|BALH_4199|Y 1.0000 169 gi|52144286|BCZK0942|YP_ 1.0000 177 gi|163938949|BcerKBAB4_0 1.0000 177 gi|217961783|BCAH187_A44 1.0000 375 gi|163938569|BcerKBAB4_0 1.0000 185 gi|218896095|BCG9842_B42 1.0000 177 gi|30263235|BA3324|NP_84 1.0000 166 gi|162382776|BALH_3534|Y 1.0000 239 gi|222096033|BCQ_2373|YP 1.0000 289 gi|42780162|BCE_1086|NP_ 1.0000 257 gi|52143656|BCZK1578|YP_ 1.0000 188 gi|52141808|BCZK3438|YP_ 1.0000 167 gi|222098834|BCQ_5203|YP 1.0000 177 gi|218896772|BCG9842_B35 1.0000 160 gi|30260357|BA0169|NP_84 1.0000 163 gi|52141167|BCZK4084|YP_ 1.0000 237 gi|222094769|BCQ_1107|YP 1.0000 156 gi|229601723|BAA_5636|YP 1.0000 175 gi|49183638|BAS0613|YP_0 1.0000 185 gi|218905890|BCAH820_477 1.0000 171 gi|49186087|BAS3082|YP_0 1.0000 166 gi|227813739|BAMEG_1143| 1.0000 235 gi|229604117|BAA_3359|YP 1.0000 166 gi|218897813|BCG9842_B24 1.0000 228 gi|225866598|BCA_4732|YP 1.0000 169 gi|218903912|BCAH820_279 1.0000 228 gi|47778165|GBAA3483|YP_ 1.0000 240 gi|49184640|BAS1626|YP_0 1.0000 188 gi|30018830|BC0647|NP_83 1.0000 185 gi|49477092|BT9727_1012| 1.0000 161 gi|52144214|BCZK1013|YP_ 1.0000 161 gi|49183127|BAS0093|YP_0 1.0000 218 gi|49186981|BAS3983|YP_0 1.0000 252 gi|218898683|BCG9842_B16 1.0000 177 gi|49183950|BAS0928|YP_0 1.0000 258 gi|52140841|BCZK4409|YP_ 1.0000 171 gi|222096292|BCQ_2632|YP 1.0000 228 gi|222098082|BCQ_4424|YP 1.0000 169 gi|229601998|BAA_3677|YP 1.0000 177 gi|16078710|BSU16470|NP_ 1.0000 254 gi|47525427|GBAA0169|YP_ 1.0000 163 gi|218903588|BCAH820_247 1.0000 289 gi|218903264|BCAH820_214 1.0000 192 gi|212639538|Aflv_1712|Y 1.0000 243 gi|30263977|BA4115|NP_84 1.0000 299 gi|16078597|BSU15330|NP_ 1.0000 260 gi|225864098|BCA_2202|YP 1.0000 192 gi|222093937|BCQ_0193|YP 1.0000 163 gi|30262761|BA2789|NP_84 1.0000 228 gi|52140312|BCZK4947|YP_ 1.0000 156 gi|218231966|BCB4264_A10 1.0000 177 gi|163942391|BcerKBAB4_4 1.0000 181 gi|16078321|BSU12560|NP_ 1.0000 169 gi|49480184|BT9727_0913| 1.0000 258 gi|30265385|BA5610|NP_84 1.0000 175 gi|56420789|GK2254|YP_14 1.0000 181 gi|49186753|BAS3754|YP_0 1.0000 289 gi|222096241|BCQ_2581|YP 1.0000 176 gi|30261806|BA1753|NP_84 1.0000 188 gi|222097523|BCQ_3863|YP 1.0000 252 gi|30021993|BC3904|NP_83 1.0000 239 gi|49476711|BT9727_0090| 1.0000 218 gi|218234550|BCB4264_A41 1.0000 252 gi|49477520|BT9727_1945| 1.0000 192 gi|30023393|BC5363|NP_83 1.0000 176 gi|42784415|BCE_5370|NP_ 1.0000 156 gi|118479464|BALH_3885|Y 1.0000 373 gi|212638699|Aflv_0856|Y 1.0000 372 gi|49479242|BT9727_2287| 1.0000 179 gi|16077241|BSU01730|NP_ 1.0000 187 gi|225864413|BCA_2518|YP 1.0000 289 gi|49481088|BT9727_1636| 1.0000 160 gi|218904561|BCAH820_344 1.0000 235 gi|42784367|BCE_5322|NP_ 1.0000 190 gi|217959667|BCAH187_A22 1.0000 192 gi|218233483|BCB4264_A24 1.0000 289 gi|163939932|BcerKBAB4_1 1.0000 192 gi|218902955|BCAH820_183 1.0000 160 gi|163939613|BcerKBAB4_1 1.0000 182 gi|42780290|BCE_1215|NP_ 1.0000 161 gi|49478518|BT9727_3813| 1.0000 252 gi|217959293|BCAH187_A18 1.0000 188 gi|227813895|BAMEG_1301| 1.0000 166 gi|217958581|BCAH187_A11 1.0000 257 gi|217958232|BCAH187_A07 1.0000 185 gi|49186236|BAS3231|YP_0 1.0000 240 gi|52143741|BCZK1493|YP_ 1.0000 179 gi|52140200|BCZK5060|YP_ 1.0000 177 gi|222097349|BCQ_3689|YP 1.0000 289 gi|30261838|BA1789|NP_84 1.0000 160 gi|163938169|BcerKBAB4_0 1.0000 163 gi|227813580|BAMEG_0984| 1.0000 177 gi|30264150|BA4294|NP_84 1.0000 252 gi|225862220|BCA_0212|YP 1.0000 164 gi|222094730|BCQ_1068|YP 1.0000 257 gi|225865247|BCA_3356|YP 1.0000 166 gi|16077166|BSU00980|NP_ 1.0000 218 gi|227817453|BAMEG_4945| 1.0000 171 gi|163941195|BcerKBAB4_3 1.0000 177 gi|30260800|BA0646|NP_84 1.0000 185 gi|163940227|BcerKBAB4_2 1.0000 289 gi|222096073|BCQ_2413|YP 1.0000 177 gi|218232155|BCB4264_A06 1.0000 185 gi|118480394|BALH_4859|Y 1.0000 207 gi|163942610|BcerKBAB4_4 1.0000 176 gi|42783467|BCE_4421|NP_ 1.0000 265 gi|217958692|BCAH187_A12 1.0000 161 gi|47778237|GBAA4042|YP_ 1.0000 259 gi|218899234|BCG9842_B10 1.0000 252 gi|218231038|BCB4264_A01 1.0000 219 gi|227812842|BAMEG_0200| 1.0000 163 gi|30262499|BA2502|NP_84 1.0000 177 gi|229601447|BAA_4069|YP 1.0000 239 gi|163938101|BcerKBAB4_0 1.0000 219 gi|225865393|BCA_3504|YP 1.0000 239 gi|42782657|BCE_3607|NP_ 1.0000 169 gi|16079402|BSU23450|NP_ 1.0000 255 gi|30264411|BA4566|NP_84 1.0000 237 gi|152977451|Bcer98_3783 1.0000 156 gi|218895700|BCG9842_B46 1.0000 185 gi|30020915|BC2794|NP_83 1.0000 228 gi|229601909|BAA_0109|YP 1.0000 218 gi|118477845|BALH_2188|Y 1.0000 289 gi|212639788|Aflv_1962|Y 1.0000 174 gi|152975676|Bcer98_1911 1.0000 227 gi|163941043|BcerKBAB4_3 1.0000 240 gi|225863696|BCA_1798|YP 1.0000 160 gi|152976769|Bcer98_3065 1.0000 237 gi|49478708|BT9727_4352| 1.0000 169 gi|222097044|BCQ_3384|YP 1.0000 169 gi|161486563|BA2970|NP_8 1.0000 192 gi|30021529|BC3426|NP_83 1.0000 239 gi|225865885|BCA_4007|YP 1.0000 259 gi|47777889|GBAA1032|YP_ 1.0000 177 gi|30020599|BC2469|NP_83 1.0000 179 gi|218904082|BCAH820_296 1.0000 192 gi|30019159|BC1004|NP_83 1.0000 258 gi|49185332|BAS2323|YP_0 1.0000 179 gi|222097350|BCQ_3690|YP 1.0000 239 gi|218897390|BCG9842_B29 1.0000 232 gi|42781261|BCE_2195|NP_ 1.0000 192 gi|218900489|BCG9842_B54 1.0000 175 gi|218902186|BCAH820_106 1.0000 257 gi|255767573|BSU25200|NP 1.0000 371 gi|222095915|BCQ_2255|YP 1.0000 166 gi|30022417|BC4336|NP_83 1.0000 240 gi|225866059|BCA_4185|YP 1.0000 252 gi|225864707|BCA_2814|YP 1.0000 176 gi|218232533|BCB4264_A11 1.0000 161 gi|218900375|BCG9842_B55 1.0000 156 gi|56421017|GK2482|YP_14 1.0000 375 gi|218905033|BCAH820_391 1.0000 259 gi|30260284|BA0093|NP_84 1.0000 218 gi|47527079|GBAA1789|YP_ 1.0000 160 gi|49186388|BAS3383|YP_0 1.0000 177 gi|163942050|BcerKBAB4_4 1.0000 375 gi|217958624|BCAH187_A12 1.0000 177 gi|218904716|BCAH820_360 1.0000 177 gi|163943299|BcerKBAB4_5 1.0000 194 gi|217959947|BCAH187_A25 1.0000 289 gi|218895229|BCG9842_B52 1.0000 219 gi|217959319|BCAH187_A19 1.0000 160 gi|118479504|BALH_3926|Y 1.0000 271 gi|49183204|BAS0171|YP_0 1.0000 163 gi|222094839|BCQ_1177|YP 1.0000 161 gi|42780931|BCE_1861|NP_ 1.0000 160 gi|163942935|BcerKBAB4_5 1.0000 156 gi|163940286|BcerKBAB4_2 1.0000 177 gi|47527408|GBAA2114|YP_ 1.0000 192 gi|227816114|BAMEG_3540| 1.0000 177 gi|118479276|BALH_3690|Y 1.0000 252 gi|218899507|BCG9842_B07 1.0000 237 gi|49477062|BT9727_0953| 1.0000 177 gi|49477843|BT9727_2501| 1.0000 176 gi|163940540|BcerKBAB4_2 1.0000 214 gi|217961326|BCAH187_A39 1.0000 239 gi|227816040|BAMEG_3466| 1.0000 161 gi|217962148|BCAH187_A47 1.0000 171 gi|30021992|BC3903|NP_83 1.0000 259 gi|49477707|BT9727_2248| 1.0000 289 gi|47525925|GBAA0646|YP_ 1.0000 185 gi|163939015|BcerKBAB4_1 1.0000 161 gi|52145050|BCZK0162|YP_ 1.0000 163 gi|222095751|BCQ_2091|YP 1.0000 192 gi|49185764|BAS2758|YP_0 1.0000 192 gi|118477553|BALH_1878|Y 1.0000 201 gi|229602177|BAA_4068|YP 1.0000 259 gi|225863070|BCA_1159|YP 1.0000 161 gi|30020245|BC2108|NP_83 1.0000 192 gi|225862980|BCA_1069|YP 1.0000 177 gi|52145123|BCZK0089|YP_ 1.0000 218 gi|52144667|BCZK0557|YP_ 1.0000 185 gi|152976724|Bcer98_3019 1.0000 373 gi|42784537|BCE_5492|NP_ 1.0000 175 gi|42783844|BCE_4798|NP_ 1.0000 181 gi|227816852|BAMEG_4334| 1.0000 252 gi|30022370|BC4289|NP_83 1.0000 375 gi|47528023|GBAA2732|YP_ 1.0000 176 gi|229601254|BAA_0200|YP 1.0000 163 gi|16079766|BSU27120|NP_ 1.0000 166 gi|212637996|Aflv_0147|Y 1.0000 187 gi|222095458|BCQ_1798|YP 1.0000 160 gi|218231149|BCB4264_A44 1.0000 237 gi|42782997|BCE_3949|NP_ 1.0000 239 gi|163942095|BcerKBAB4_4 1.0000 237 gi|52144331|BCZK0896|YP_ 1.0000 258 gi|49481227|BT9727_4932| 1.0000 146 gi|118476614|BALH_0889|Y 1.0000 258 gi|47529410|GBAA4115|YP_ 1.0000 299 gi|52143032|BCZK2206|YP_ 1.0000 289 gi|217959200|BCAH187_A17 1.0000 179 gi|47526271|GBAA0992|YP_ 1.0000 257 gi|229603576|BAA_5520|YP 1.0000 156 gi|30261116|BA0992|NP_84 1.0000 257 gi|47529588|GBAA4294|YP_ 1.0000 252 gi|217961324|BCAH187_A39 1.0000 259 gi|42782494|BCE_3441|NP_ 1.0000 235 gi|225866320|BCA_4450|YP 1.0000 237 gi|222098712|BCQ_5081|YP 1.0000 144 gi|229603088|BAA_2796|YP 1.0000 176 gi|218233874|BCB4264_A10 1.0000 176 gi|255767497|BSU23100|NP 1.0000 194 gi|229602244|BAA_1827|YP 1.0000 188 gi|52141583|BCZK3663|YP_ 1.0000 239 gi|229601154|BAA_4536|YP 1.0000 373 gi|47527745|GBAA2454|YP_ 1.0000 289 gi|56419467|GK0932|YP_14 1.0000 246 gi|217962852|BCAH187_A55 1.0000 177 gi|227815422|BAMEG_2835| 1.0000 188 gi|218898488|BCG9842_B18 1.0000 239 gi|217962100|BCAH187_A47 1.0000 169 gi|217961829|BCAH187_A44 1.0000 237 gi|227817116|BAMEG_4602| 1.0000 237 gi|49478801|BT9727_4602| 1.0000 176 gi|30262453|BA2454|NP_84 1.0000 289 gi|227812767|BAMEG_0109| 1.0000 218 gi|42783188|BCE_4142|NP_ 1.0000 252 gi|218905848|BCAH820_473 1.0000 169 gi|227818128|BAMEG_5654| 1.0000 175 gi|229600567|BAA_4139|YP 1.0000 314 gi|218230792|BCB4264_A17 1.0000 188 gi|30018364|BC0114|NP_82 1.0000 219 gi|52142720|BCZK2519|YP_ 1.0000 228 gi|30264734|BA4913|NP_84 1.0000 181 gi|225867344|BCA_5512|YP 1.0000 175 gi|218903856|BCAH820_274 1.0000 176 gi|217962737|BCAH187_A54 1.0000 156 gi|229601329|BAA_3825|YP 1.0000 167 gi|218231851|BCB4264_A24 1.0000 177 gi|229604478|BAA_1086|YP 1.0000 257 gi|30263905|BA4042|NP_84 1.0000 259 gi|227816152|BAMEG_3579| 1.0000 257 gi|152977601|Bcer98_3939 1.0000 176 gi|212638845|Aflv_1004|Y 1.0000 247 gi|47528609|GBAA3324|YP_ 1.0000 166 gi|218905429|BCAH820_431 1.0000 373 gi|218899458|BCG9842_B08 1.0000 375 gi|49478441|BT9727_3645| 1.0000 289 gi|222097738|BCQ_4079|YP 1.0000 375 gi|229602397|BAA_1198|YP 1.0000 161 gi|30262135|BA2114|NP_84 1.0000 192 gi|42779174|BCE_0093|NP_ 1.0000 219 gi|52141420|BCZK3829|YP_ 1.0000 252 gi|225862940|BCA_1029|YP 1.0000 257 gi|42780207|BCE_1131|NP_ 1.0000 177 gi|225862146|BCA_0122|YP 1.0000 218 gi|47527789|GBAA2502|YP_ 1.0000 177 gi|49476853|BT9727_0558| 1.0000 185 gi|218902311|BCAH820_119 1.0000 161 gi|52142270|BCZK2972|YP_ 1.0000 166 gi|212639647|Aflv_1821|Y 1.0000 239 gi|227814227|BAMEG_1635| 1.0000 192 gi|218905533|BCAH820_441 1.0000 149 gi|227813117|BAMEG_0515| 1.0000 314 gi|163941361|BcerKBAB4_3 1.0000 167 gi|218896046|BCG9842_B42 1.0000 176 gi|212638503|Aflv_0658|Y 1.0000 166 gi|56419663|GK1128|YP_14 1.0000 259 gi|152976264|Bcer98_2552 1.0000 259 gi|118477234|BALH_1540|Y 1.0000 188 gi|218233191|BCB4264_A47 1.0000 171 gi|47528934|GBAA3649|YP_ 1.0000 169 gi|218904418|BCAH820_330 1.0000 166 gi|218901296|BCAH820_010 1.0000 218 gi|163941643|BcerKBAB4_3 1.0000 292 gi|52142997|BCZK2243|YP_ 1.0000 179 gi|30263679|BA3803|NP_84 1.0000 167 gi|56419781|GK1246|YP_14 1.0000 251 gi|30265276|BA5493|NP_84 1.0000 146 gi|227814399|BAMEG_1807| 1.0000 228 gi|218231054|BCB4264_A34 1.0000 239 gi|30020517|BC2386|NP_83 1.0000 289 gi|221316967|BCQ_PT45|YP 1.0000 166 gi|218900006|BCG9842_B02 1.0000 137 gi|217961566|BCAH187_A42 1.0000 252 gi|227814737|BAMEG_2147| 1.0000 289 gi|227813187|BAMEG_0585| 1.0000 259 gi|218903633|BCAH820_251 1.0000 177 gi|163939640|BcerKBAB4_1 1.0000 181 gi|56421070|GK2535|YP_14 1.0000 237 gi|118478099|BALH_2454|Y 1.0000 176 gi|225865571|BCA_3683|YP 1.0000 177 gi|218896055|BCG9842_B42 1.0000 257 gi|30264362|BA4515|NP_84 1.0000 373 gi|222098134|BCQ_4476|YP 1.0000 181 gi|47529336|GBAA4043|YP_ 1.0000 239 gi|217959986|BCAH187_A25 1.0000 177 gi|225865886|BCA_4008|YP 1.0000 239 gi|217957669|BCAH187_A01 1.0000 218 gi|52142105|BCZK3137|YP_ 1.0000 240 gi|30021690|BC3589|NP_83 1.0000 177 gi|47525348|GBAA0093|YP_ 1.0000 218 gi|222096892|BCQ_3232|YP 1.0000 235 gi|118478149|BALH_2506|Y 1.0000 231 gi|49477300|BT9727_1502| 1.0000 179 gi|47530207|GBAA4913|YP_ 1.0000 181 gi|30263906|BA4043|NP_84 1.0000 239 gi|222095341|BCQ_1681|YP 1.0000 179 gi|218906540|BCAH820_545 1.0000 175 gi|16078017|BSU09520|NP_ 1.0000 163 gi|49184672|BAS1658|YP_0 1.0000 160 gi|218233406|BCB4264_A40 1.0000 259 gi|227818013|BAMEG_5539| 1.0000 156 gi|218896738|BCG9842_B35 1.0000 188 gi|225863663|BCA_1765|YP 1.0000 188 gi|52143316|BCZK1921|YP_ 1.0000 192 gi|222097784|BCQ_4125|YP 1.0000 263 gi|227814691|BAMEG_2101| 1.0000 177 gi|218905035|BCAH820_391 1.0000 239 gi|118475864|BALH_0093|Y 1.0000 218 gi|49185294|BAS2285|YP_0 1.0000 289 gi|217959830|BCAH187_A24 1.0000 166 gi|163942349|BcerKBAB4_4 1.0000 169 gi|218232670|BCB4264_A10 1.0000 257 gi|42783418|BCE_4372|NP_ 1.0000 375 gi|52142774|BCZK2466|YP_ 1.0000 176 gi|42781877|BCE_2820|NP_ 1.0000 228 gi|42781595|BCE_2534|NP_ 1.0000 177 gi|218899058|BCG9842_B12 1.0000 239 gi|49185553|BAS2545|YP_0 1.0000 176 gi|49187232|BAS4236|YP_0 1.0000 237 gi|227814455|BAMEG_1863| 1.0000 176 gi|225864766|BCA_2873|YP 1.0000 228 gi|42779792|BCE_0714|NP_ 1.0000 185 gi|30023283|BC5251|NP_83 1.0000 156 gi|49188198|BAS5212|YP_0 1.0000 175 gi|49478105|BT9727_3026| 1.0000 166 gi|152973941|Bcer98_0088 1.0000 220 gi|152976265|Bcer98_2553 1.0000 239 gi|49481728|BT9727_3204| 1.0000 240 gi|49185607|BAS2600|YP_0 1.0000 228 gi|47529087|GBAA3803|YP_ 1.0000 167 gi|47526385|GBAA1113|YP_ 1.0000 161 gi|225867222|BCA_5390|YP 1.0000 156 gi|49481469|BT9727_4074| 1.0000 237 gi|52141207|BCZK4042|YP_ 1.0000 373 gi|227813186|BAMEG_0584| 1.0000 239 gi|218905210|BCAH820_409 1.0000 252 gi|218896153|BCG9842_B41 1.0000 161 gi|218234396|BCB4264_A27 1.0000 228 gi|229603531|BAA_0728|YP 1.0000 185 gi|229602619|BAA_2180|YP 1.0000 192 gi|42782996|BCE_3948|NP_ 1.0000 289 gi|217960231|BCAH187_A28 1.0000 228 gi|49184977|BAS1966|YP_0 1.0000 192 gi|218231535|BCB4264_A37 1.0000 177 gi|227816484|BAMEG_3941| 1.0000 185 gi|222093864|BCQ_0107|YP 1.0000 218 gi|49479125|BT9727_2552| 1.0000 228 gi|56421959|GK3424|YP_14 1.0000 256 gi|118478695|BALH_3081|Y 1.0000 248 gi|163939522|BcerKBAB4_1 1.0000 181 gi|212639646|Aflv_1820|Y 1.0000 259 gi|118477905|BALH_2250|Y 1.0000 180 gi|49184055|BAS1035|YP_0 1.0000 161 gi|16078409|BSU13450|NP_ 1.0000 251 gi|218906428|BCAH820_534 1.0000 156 gi|30019842|BC1698|NP_83 1.0000 188 gi|225864482|BCA_2587|YP 1.0000 177 gi|218232261|BCB4264_A44 1.0000 375 gi|30261223|BA1113|NP_84 1.0000 161 gi|255767354|BSU15320|NP 1.0000 239 gi|47528082|GBAA2789|YP_ 1.0000 228 gi|212637937|Aflv_0088|Y 1.0000 223 gi|218902228|BCAH820_111 1.0000 177 gi|30262705|BA2732|NP_84 1.0000 176 gi|30261155|BA1032|NP_84 1.0000 177 gi|30019269|BC1114|NP_83 1.0000 161 gi|30263387|BA3483|NP_84 1.0000 240 gi|56418624|GK0089|YP_14 1.0000 216 gi|218233984|BCB4264_A53 1.0000 156 gi|212638144|Aflv_0295|Y 1.0000 159 gi|118476646|BALH_0922|Y 1.0000 177 gi|49480428|BT9727_5044| 1.0000 176 gi|217957742|BCAH187_A02 1.0000 164 gi|56418685|GK0150|YP_14 1.0000 187 gi|42780899|BCE_1829|NP_ 1.0000 188 gi|227815066|BAMEG_2477| 1.0000 192 gi|49479249|BT9727_3349| 1.0000 177 gi|47527044|GBAA1753|YP_ 1.0000 188 gi|229603939|BAA_4584|YP 1.0000 237
This information can also be useful in the event you wish to report a problem with the MEME software. command: meme secondpass.twoline.faa -protein -mod zoops -nmotifs 10 -wg 3 -ws 1 -noendgaps -maxsize 200000 -dir /root model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 3 ws= 1 endgaps= no nsites: minsites= 2 maxsites= 871 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 em: prior= megap b= 944665 maxiter= 50 distance= 1e-05 data: n= 188933 N= 871 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.057 C 0.006 D 0.061 E 0.105 F 0.034 G 0.040 H 0.020 I 0.079 K 0.088 L 0.103 M 0.028 N 0.036 P 0.022 Q 0.047 R 0.065 S 0.056 T 0.043 V 0.061 W 0.009 Y 0.042 Background letter frequencies (from dataset with add-one prior applied): A 0.057 C 0.006 D 0.061 E 0.105 F 0.034 G 0.040 H 0.020 I 0.079 K 0.088 L 0.103 M 0.028 N 0.036 P 0.022 Q 0.047 R 0.065 S 0.056 T 0.043 V 0.061 W 0.009 Y 0.042
Time 7149.97 secs.
Time 11415.77 secs.
Time 15539.35 secs.
Time 18973.11 secs.
Time 21350.05 secs.
Time 23385.97 secs.
Time 25342.23 secs.
Time 27000.07 secs.
Time 28058.02 secs.
Time 29106.07 secs.
CPU: dhcp-157-142-103-178
MOTIFS
For each motif that it discovers in the training set, MEME prints the following information:
J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.
Summing the information content for each position in the motif gives the total information content of the motif (shown in parentheses to the left of the diagram). The total information content is approximately equal to the log likelihood ratio divided by the number of occurrences times ln(2). The total information content gives a measure of the usefulness of the motif for database searches. For a motif to be useful for database searches, it must as a rule contain at least log_2(N) bits of information where N is the number of sequences in the database being searched. For example, to effectively search a database containing 100,000 sequences for occurrences of a single motif, the motif should have an IC of at least 16.6 bits. Motifs with lower information content are still useful when a family of sequences shares more than one motif since they can be combined in multiple motif searches (using MAST).
Multilevel TTATGTGAACGACGTCACACT consensus AA T A G A GA AA sequence T C TT T
You can convert these blocks to PSSMs (position-specific scoring matrices), LOGOS (color representations of the motifs), phylogeny trees and search them against a database of other blocks by pasting everything from the "BL" line to the "//" line (inclusive) into the Multiple Alignment Processor. If you include the -print_fasta switch on the command line, MEME prints the motif sites in FASTA format instead of BLOCKS format.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
[sequence_name combined_p-value number_of_motif_occurrences [motif_number start_of_motif position_p-value]+]+