LevelGO	Term(Acc)	Term(Name)	#Seq	Score	Parents(Acc)	Parents(Name)
1	GO:0005575	cellular_component	14194	4607.79		
3	GO:0044464	cell part	10633	4271.13	"GO:0005623, GO:0005575"	"cell, cellular_component"
2	GO:0016020	membrane	7715	4053.96	GO:0005575	cellular_component
5	GO:0005737	cytoplasm	6981	3733.87	GO:0044424	intracellular part
5	GO:0016021	integral to membrane	4325	3726.46	GO:0031224	intrinsic to membrane
6	GO:0043231	intracellular membrane-bounded organelle	6359	3715.37	"GO:0043229, GO:0043227"	"intracellular organelle, membrane-bounded organelle"
4	GO:0044424	intracellular part	9149	3714.64	"GO:0044464, GO:0005622"	"cell part, intracellular"
5	GO:0044444	cytoplasmic part	5429	3637.42	"GO:0005737, GO:0044424"	"cytoplasm, intracellular part"
5	GO:0043229	intracellular organelle	7226	2882.66	"GO:0043226, GO:0044424"	"organelle, intracellular part"
2	GO:0005623	cell	10634	2563.68	GO:0005575	cellular_component
4	GO:0005622	intracellular	9468	2547.78	GO:0044464	cell part
3	GO:0043227	membrane-bounded organelle	6365	2339.18	GO:0043226	organelle
4	GO:0031224	intrinsic to membrane	4339	2247.84	GO:0044425	membrane part
7	GO:0005634	nucleus	2615	2085.58	GO:0043231	intracellular membrane-bounded organelle
4	GO:0005886	plasma membrane	2444	1823.82	"GO:0044464, GO:0071944, GO:0016020"	"cell part, cell periphery, membrane"
3	GO:0044425	membrane part	4725	1787.93	"GO:0005575, GO:0016020"	"cellular_component, membrane"
2	GO:0043226	organelle	7235	1787.55	GO:0005575	cellular_component
3	GO:0043234	protein complex	2672	1439.74	GO:0032991	macromolecular complex
4	GO:0044446	intracellular organelle part	3371	1428.77	"GO:0044422, GO:0043229, GO:0044424"	"organelle part, intracellular organelle, intracellular part"
4	GO:0071944	cell periphery	2614	1216.37	GO:0044464	cell part
2	GO:0032991	macromolecular complex	3245	1116.44	GO:0005575	cellular_component
6	GO:0005829	cytosol	1126	1033.39	GO:0044444	cytoplasmic part
6	GO:0043232	intracellular non-membrane-bounded organelle	1990	997.06	"GO:0043229, GO:0043228"	"intracellular organelle, non-membrane-bounded organelle"
3	GO:0044422	organelle part	3456	993.3	"GO:0005575, GO:0043226"	"cellular_component, organelle"
6	GO:0005739	mitochondrion	1147	948.7	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
6	GO:0009536	plastid	1441	823.81	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
8	GO:0009507	chloroplast	1052	771.96	GO:0009536	plastid
6	GO:0044430	cytoskeletal part	980	634.42	"GO:0044446, GO:0005856"	"intracellular organelle part, cytoskeleton"
6	GO:0044428	nuclear part	900	623.3	"GO:0005634, GO:0044446"	"nucleus, intracellular organelle part"
3	GO:0043228	non-membrane-bounded organelle	1990	598.24	GO:0043226	organelle
4	GO:0044459	plasma membrane part	987	595.37	"GO:0044464, GO:0005886, GO:0044425"	"cell part, plasma membrane, membrane part"
7	GO:0005856	cytoskeleton	1157	561.21	GO:0043232	intracellular non-membrane-bounded organelle
8	GO:0015630	microtubule cytoskeleton	865	558.27	GO:0005856	cytoskeleton
4	GO:0031090	organelle membrane	1025	529.26	"GO:0044422, GO:0016020, GO:0043227"	"organelle part, membrane, membrane-bounded organelle"
6	GO:0005794	Golgi apparatus	661	514.08	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
6	GO:0005783	endoplasmic reticulum	681	487.67	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
7	GO:0031981	nuclear lumen	697	400.71	"GO:0044428, GO:0070013"	"nuclear part, intracellular organelle lumen"
6	GO:0005730	nucleolus	401	397.51	"GO:0044428, GO:0031981, GO:0043232"	"nuclear part, nuclear lumen, intracellular non-membrane-bounded organelle"
5	GO:0030529	ribonucleoprotein complex	629	395	"GO:0032991, GO:0044424"	"macromolecular complex, intracellular part"
2	GO:0005576	extracellular region	497	376.42	GO:0005575	cellular_component
7	GO:0005887	integral to plasma membrane	517	373.44	"GO:0016021, GO:0031226"	"integral to membrane, intrinsic to plasma membrane"
7	GO:0044434	chloroplast part	493	354.93	"GO:0044435, GO:0009507"	"plastid part, chloroplast"
6	GO:0070013	intracellular organelle lumen	891	350.37	"GO:0044446, GO:0043233"	"intracellular organelle part, organelle lumen"
4	GO:0042995	cell projection	744	344.53	GO:0044464	cell part
8	GO:0005871	kinesin complex	319	313	GO:0005875	microtubule associated complex
7	GO:0005874	microtubule	332	305.47	"GO:0043234, GO:0015630, GO:0044430"	"protein complex, microtubule cytoskeleton, cytoskeletal part"
6	GO:0005773	vacuole	535	298.26	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
4	GO:0097458	neuron part	479	294.27	GO:0044464	cell part
6	GO:0034703	cation channel complex	588	284.18	GO:0034702	ion channel complex
7	GO:0005875	microtubule associated complex	464	277.31	"GO:0043234, GO:0015630, GO:0044430"	"protein complex, microtubule cytoskeleton, cytoskeletal part"
7	GO:0016023	cytoplasmic membrane-bounded vesicle	386	265.51	"GO:0031410, GO:0043231, GO:0031988"	"cytoplasmic vesicle, intracellular membrane-bounded organelle, membrane-bounded vesicle"
4	GO:0012505	endomembrane system	541	249.85	GO:0044464	cell part
6	GO:0044435	plastid part	526	245.12	"GO:0044446, GO:0044444, GO:0009536"	"intracellular organelle part, cytoplasmic part, plastid"
6	GO:0031226	intrinsic to plasma membrane	529	234.06	"GO:0044459, GO:0031224"	"plasma membrane part, intrinsic to membrane"
8	GO:0009570	chloroplast stroma	239	230.8	"GO:0044434, GO:0009532"	"chloroplast part, plastid stroma"
7	GO:0005774	vacuolar membrane	261	220.88	"GO:0031090, GO:0044437"	"organelle membrane, vacuolar part"
8	GO:0009941	chloroplast envelope	246	219.34	"GO:0044434, GO:0009526"	"chloroplast part, plastid envelope"
5	GO:0043005	neuron projection	397	213.8	"GO:0042995, GO:0097458"	"cell projection, neuron part"
4	GO:0043233	organelle lumen	893	211.37	"GO:0044422, GO:0031974"	"organelle part, membrane-enclosed lumen"
4	GO:0031967	organelle envelope	598	201.67	"GO:0044446, GO:0031975, GO:0043227"	"intracellular organelle part, envelope, membrane-bounded organelle"
6	GO:0005840	ribosome	267	197.87	"GO:0030529, GO:0044444, GO:0043232"	"ribonucleoprotein complex, cytoplasmic part, intracellular non-membrane-bounded organelle"
7	GO:0005813	centrosome	218	196.76	"GO:0043232, GO:0005815"	"intracellular non-membrane-bounded organelle, microtubule organizing center"
6	GO:0005768	endosome	245	193.26	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
6	GO:0001518	voltage-gated sodium channel complex	190	190	"GO:0034706, GO:0005887, GO:0044459"	"sodium channel complex, integral to plasma membrane, plasma membrane part"
6	GO:0044432	endoplasmic reticulum part	302	188.33	"GO:0044446, GO:0044444, GO:0005783"	"intracellular organelle part, cytoplasmic part, endoplasmic reticulum"
6	GO:0031410	cytoplasmic vesicle	411	187.04	"GO:0044444, GO:0031982, GO:0043229"	"cytoplasmic part, vesicle, intracellular organelle"
6	GO:0005654	nucleoplasm	286	182.46	"GO:0044428, GO:0031981"	"nuclear part, nuclear lumen"
6	GO:0005891	voltage-gated calcium channel complex	184	177.6	"GO:0034704, GO:0044459"	"calcium channel complex, plasma membrane part"
4	GO:0044463	cell projection part	315	176.76	"GO:0044464, GO:0042995"	"cell part, cell projection"
5	GO:0034702	ion channel complex	601	176.15	"GO:0016021, GO:0043234, GO:0044425"	"integral to membrane, protein complex, membrane part"
6	GO:0030424	axon	284	171.77	GO:0043005	neuron projection
5	GO:0000151	ubiquitin ligase complex	228	171.54	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
4	GO:0031988	membrane-bounded vesicle	402	170.3	GO:0031982	vesicle
5	GO:0005952	cAMP-dependent protein kinase complex	170	170	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
4	GO:0009506	plasmodesma	168	168	"GO:0005911, GO:0055044"	"cell-cell junction, symplast"
7	GO:0005815	microtubule organizing center	280	167.69	"GO:0015630, GO:0044430"	"microtubule cytoskeleton, cytoskeletal part"
7	GO:0005929	cilium	250	164.69	"GO:0042995, GO:0043231"	"cell projection, intracellular membrane-bounded organelle"
4	GO:0000139	Golgi membrane	178	155.26	"GO:0044431, GO:0031090, GO:0012505"	"Golgi apparatus part, organelle membrane, endomembrane system"
4	GO:0005789	endoplasmic reticulum membrane	200	150.62	"GO:0044432, GO:0031090, GO:0044425, GO:0042175"	"endoplasmic reticulum part, organelle membrane, membrane part, nuclear outer membrane-endoplasmic reticulum membrane network"
6	GO:0008076	voltage-gated potassium channel complex	149	149	"GO:0005887, GO:0044459, GO:0034705"	"integral to plasma membrane, plasma membrane part, potassium channel complex"
3	GO:0005911	cell-cell junction	244	147.36	GO:0030054	cell junction
6	GO:0048471	perinuclear region of cytoplasm	145	144.2	GO:0044444	cytoplasmic part
7	GO:0009532	plastid stroma	245	143.96	GO:0044435	plastid part
4	GO:0009986	cell surface	148	139.68	GO:0044464	cell part
7	GO:0009526	plastid envelope	253	139.33	"GO:0044435, GO:0031967"	"plastid part, organelle envelope"
6	GO:0044437	vacuolar part	274	138.77	"GO:0044446, GO:0044444, GO:0005773"	"intracellular organelle part, cytoplasmic part, vacuole"
7	GO:0044299	C-fiber	136	136	GO:0030424	axon
2	GO:0031974	membrane-enclosed lumen	913	135.46	GO:0005575	cellular_component
3	GO:0031982	vesicle	437	130.82	GO:0043226	organelle
5	GO:0043025	neuronal cell body	138	128.8	"GO:0097458, GO:0044297"	"neuron part, cell body"
7	GO:0034704	calcium channel complex	206	128.56	GO:0034703	cation channel complex
4	GO:0031975	envelope	619	128.56	GO:0044464	cell part
6	GO:0044431	Golgi apparatus part	224	128.47	"GO:0044446, GO:0044444, GO:0005794"	"intracellular organelle part, cytoplasmic part, Golgi apparatus"
6	GO:0044429	mitochondrial part	277	128.17	"GO:0044446, GO:0044444, GO:0005739"	"intracellular organelle part, cytoplasmic part, mitochondrion"
7	GO:0034706	sodium channel complex	203	127	GO:0034703	cation channel complex
2	GO:0045202	synapse	183	124.1	GO:0005575	cellular_component
7	GO:0005694	chromosome	255	121.77	GO:0043232	intracellular non-membrane-bounded organelle
6	GO:0005743	mitochondrial inner membrane	137	120.87	"GO:0031966, GO:0019866"	"mitochondrial membrane, organelle inner membrane"
6	GO:0031966	mitochondrial membrane	197	120.45	"GO:0031090, GO:0044429, GO:0005740"	"organelle membrane, mitochondrial part, mitochondrial envelope"
7	GO:0005819	spindle	148	118.86	"GO:0043234, GO:0043232, GO:0015630, GO:0044430"	"protein complex, intracellular non-membrane-bounded organelle, microtubule cytoskeleton, cytoskeletal part"
5	GO:0005618	cell wall	141	118.68	GO:0030312	external encapsulating structure
6	GO:0016323	basolateral plasma membrane	129	118.2	GO:0044459	plasma membrane part
7	GO:0009534	chloroplast thylakoid	156	117.48	"GO:0044434, GO:0031976"	"chloroplast part, plastid thylakoid"
2	GO:0030054	cell junction	276	113.8	GO:0005575	cellular_component
7	GO:0009535	chloroplast thylakoid membrane	114	112.8	"GO:0009534, GO:0044434, GO:0055035"	"chloroplast thylakoid, chloroplast part, plastid thylakoid membrane"
8	GO:0005764	lysosome	124	109.92	GO:0000323	lytic vacuole
8	GO:0015629	actin cytoskeleton	155	104.15	GO:0005856	cytoskeleton
7	GO:0005788	endoplasmic reticulum lumen	106	100.8	"GO:0044432, GO:0070013"	"endoplasmic reticulum part, intracellular organelle lumen"
2	GO:0055044	symplast	168	100.8	GO:0005575	cellular_component
4	GO:0005615	extracellular space	101	96.78	GO:0044421	extracellular region part
6	GO:0030425	dendrite	115	95.34	GO:0043005	neuron projection
5	GO:0005635	nuclear envelope	131	95.24	"GO:0044428, GO:0031967, GO:0012505"	"nuclear part, organelle envelope, endomembrane system"
7	GO:0005740	mitochondrial envelope	220	93.47	"GO:0031967, GO:0044429"	"organelle envelope, mitochondrial part"
7	GO:0005802	trans-Golgi network	95	93	GO:0043231	intracellular membrane-bounded organelle
6	GO:0044449	contractile fiber part	135	91.2	"GO:0044444, GO:0043292, GO:0044422"	"cytoplasmic part, contractile fiber, organelle part"
4	GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	201	90.97	"GO:0044464, GO:0016020, GO:0044425, GO:0012505"	"cell part, membrane, membrane part, endomembrane system"
6	GO:0044427	chromosomal part	179	90.83	"GO:0044446, GO:0005694"	"intracellular organelle part, chromosome"
7	GO:0034705	potassium channel complex	149	89.4	GO:0034703	cation channel complex
8	GO:0005777	peroxisome	128	88.97	GO:0042579	microbody
3	GO:0044456	synapse part	127	87.83	"GO:0005575, GO:0045202"	"cellular_component, synapse"
5	GO:0009579	thylakoid	208	85.66	GO:0044424	intracellular part
3	GO:0044421	extracellular region part	139	84.7	"GO:0005575, GO:0005576"	"cellular_component, extracellular region"
5	GO:0019866	organelle inner membrane	164	83.48	"GO:0031967, GO:0031090, GO:0044424"	"organelle envelope, organelle membrane, intracellular part"
4	GO:0044297	cell body	143	82.28	GO:0044464	cell part
3	GO:0048046	apoplast	81	81	GO:0005576	extracellular region
7	GO:0030017	sarcomere	127	79.68	"GO:0044449, GO:0030016"	"contractile fiber part, myofibril"
4	GO:0030312	external encapsulating structure	160	78.05	"GO:0044464, GO:0071944"	"cell part, cell periphery"
7	GO:0000323	lytic vacuole	149	76.39	GO:0005773	vacuole
6	GO:0044451	nucleoplasm part	148	74.1	"GO:0044428, GO:0005654"	"nuclear part, nucleoplasm"
8	GO:0030286	dynein complex	90	72.52	GO:0005875	microtubule associated complex
6	GO:0031976	plastid thylakoid	156	70.49	"GO:0044435, GO:0009579, GO:0031984"	"plastid part, thylakoid, organelle subcompartment"
6	GO:0055035	plastid thylakoid membrane	114	67.68	"GO:0031976, GO:0044435, GO:0042651"	"plastid thylakoid, plastid part, thylakoid membrane"
6	GO:0044445	cytosolic part	133	67.32	"GO:0044444, GO:0005829"	"cytoplasmic part, cytosol"
8	GO:0020011	apicoplast	66	66	GO:0009536	plastid
5	GO:0030315	T-tubule	66	66	"GO:0042383, GO:0044459"	"sarcolemma, plasma membrane part"
5	GO:0042383	sarcolemma	92	65.6	GO:0005886	plasma membrane
4	GO:0016324	apical plasma membrane	65	65	"GO:0045177, GO:0044459"	"apical part of cell, plasma membrane part"
5	GO:0030018	Z disc	64	64	"GO:0031674, GO:0044449"	"I band, contractile fiber part"
5	GO:0005938	cell cortex	106	63.76	"GO:0044444, GO:0071944"	"cytoplasmic part, cell periphery"
6	GO:0031301	integral to organelle membrane	109	63.26	"GO:0016021, GO:0031300"	"integral to membrane, intrinsic to organelle membrane"
6	GO:0030176	integral to endoplasmic reticulum membrane	69	63.12	"GO:0031301, GO:0031227"	"integral to organelle membrane, intrinsic to endoplasmic reticulum membrane"
6	GO:0005681	spliceosomal complex	77	62.72	"GO:0030529, GO:0044428"	"ribonucleoprotein complex, nuclear part"
5	GO:0000502	proteasome complex	86	62.62	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
7	GO:0005759	mitochondrial matrix	73	61.84	"GO:0070013, GO:0044429"	"intracellular organelle lumen, mitochondrial part"
5	GO:0031674	I band	87	61.4	"GO:0044449, GO:0030017"	"contractile fiber part, sarcomere"
7	GO:0030016	myofibril	136	61.01	GO:0043292	contractile fiber
6	GO:0043292	contractile fiber	141	59.76	"GO:0044444, GO:0043232"	"cytoplasmic part, intracellular non-membrane-bounded organelle"
7	GO:0000325	plant-type vacuole	77	59.4	GO:0005773	vacuole
6	GO:0042579	microbody	128	58.04	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
6	GO:0016328	lateral plasma membrane	58	58	GO:0044459	plasma membrane part
5	GO:0000922	spindle pole	61	56.16	"GO:0005819, GO:0043234, GO:0044430"	"spindle, protein complex, cytoskeletal part"
7	GO:0016459	myosin complex	66	55.51	"GO:0015629, GO:0043234, GO:0044430"	"actin cytoskeleton, protein complex, cytoskeletal part"
6	GO:0031965	nuclear membrane	55	54.6	"GO:0044428, GO:0031090, GO:0005635"	"nuclear part, organelle membrane, nuclear envelope"
6	GO:0031461	cullin-RING ubiquitin ligase complex	88	54.36	GO:0000151	ubiquitin ligase complex
7	GO:0022626	cytosolic ribosome	73	53.8	"GO:0005840, GO:0044445"	"ribosome, cytosolic part"
5	GO:0005876	spindle microtubule	57	53.4	"GO:0005819, GO:0005874"	"spindle, microtubule"
4	GO:0045177	apical part of cell	83	53.02	GO:0044464	cell part
8	GO:0016604	nuclear body	79	52.16	GO:0044451	nucleoplasm part
6	GO:0033267	axon part	89	51.95	"GO:0030424, GO:0097458, GO:0044463"	"axon, neuron part, cell projection part"
7	GO:0042651	thylakoid membrane	125	51.81	GO:0034357	photosynthetic membrane
4	GO:0031984	organelle subcompartment	177	50.69	"GO:0044446, GO:0043227"	"intracellular organelle part, membrane-bounded organelle"
8	GO:0072372	primary cilium	80	49.73	GO:0005929	cilium
7	GO:0010008	endosome membrane	55	49.4	"GO:0044440, GO:0031090"	"endosomal part, organelle membrane"
6	GO:0030659	cytoplasmic vesicle membrane	96	49.03	"GO:0044433, GO:0012506, GO:0016023"	"cytoplasmic vesicle part, vesicle membrane, cytoplasmic membrane-bounded vesicle"
5	GO:0014704	intercalated disc	49	49	GO:0044291	cell-cell contact zone
5	GO:0005930	axoneme	85	48.63	"GO:0044463, GO:0044422, GO:0043231, GO:0044424"	"cell projection part, organelle part, intracellular membrane-bounded organelle, intracellular part"
5	GO:0045211	postsynaptic membrane	47	47	GO:0097060	synaptic membrane
5	GO:0044441	cilium part	77	46.8	"GO:0005929, GO:0044446, GO:0044463, GO:0031514"	"cilium, intracellular organelle part, cell projection part, motile cilium"
7	GO:0030118	clathrin coat	73	46.6	GO:0030117	membrane coat
5	GO:0071439	clathrin complex	46	46	"GO:0044444, GO:0043234, GO:0030118, GO:0044425"	"cytoplasmic part, protein complex, clathrin coat, membrane part"
6	GO:0000228	nuclear chromosome	99	45.77	"GO:0044428, GO:0031981, GO:0005694"	"nuclear part, nuclear lumen, chromosome"
8	GO:0005932	microtubule basal body	52	45.6	"GO:0044463, GO:0005815"	"cell projection part, microtubule organizing center"
6	GO:0044454	nuclear chromosome part	74	45.28	"GO:0044428, GO:0000228, GO:0044427"	"nuclear part, nuclear chromosome, chromosomal part"
4	GO:0030117	membrane coat	99	45.16	"GO:0044444, GO:0043234, GO:0048475, GO:0044425"	"cytoplasmic part, protein complex, coated membrane, membrane part"
4	GO:0097060	synaptic membrane	70	44.92	"GO:0044456, GO:0016020"	"synapse part, membrane"
4	GO:0008287	protein serine/threonine phosphatase complex	52	44.6	"GO:0044464, GO:0043234"	"cell part, protein complex"
8	GO:0000793	condensed chromosome	80	44.47	GO:0005694	chromosome
6	GO:0009505	plant-type cell wall	44	44	GO:0005618	cell wall
8	GO:0031514	motile cilium	93	43.48	GO:0005929	cilium
7	GO:0009705	plant-type vacuole membrane	43	43	"GO:0005774, GO:0000325"	"vacuolar membrane, plant-type vacuole"
6	GO:0044304	main axon	32	43	GO:0033267	axon part
5	GO:0031227	intrinsic to endoplasmic reticulum membrane	74	42.87	"GO:0044432, GO:0031300, GO:0005789"	"endoplasmic reticulum part, intrinsic to organelle membrane, endoplasmic reticulum membrane"
6	GO:0016529	sarcoplasmic reticulum	44	41.6	"GO:0005783, GO:0016528"	"endoplasmic reticulum, sarcoplasm"
9	GO:0016607	nuclear speck	42	41.6	GO:0016604	nuclear body
4	GO:0031300	intrinsic to organelle membrane	115	41.56	"GO:0044446, GO:0031090, GO:0031224"	"intracellular organelle part, organelle membrane, intrinsic to membrane"
7	GO:0000785	chromatin	59	41.54	GO:0044427	chromosomal part
5	GO:0044436	thylakoid part	151	41.03	"GO:0044424, GO:0009579"	"intracellular part, thylakoid"
4	GO:0030496	midbody	41	41	GO:0044464	cell part
4	GO:0045121	membrane raft	58	40.32	GO:0044425	membrane part
6	GO:0044450	microtubule organizing center part	62	40.08	"GO:0044444, GO:0005815, GO:0044430"	"cytoplasmic part, microtubule organizing center, cytoskeletal part"
7	GO:0031463	Cul3-RING ubiquitin ligase complex	40	40	GO:0031461	cullin-RING ubiquitin ligase complex
5	GO:0034357	photosynthetic membrane	137	39.4	"GO:0044436, GO:0016020, GO:0009579"	"thylakoid part, membrane, thylakoid"
6	GO:0035085	cilium axoneme	39	39	"GO:0044444, GO:0044441, GO:0005930, GO:0097014"	"cytoplasmic part, cilium part, axoneme, cilium cytoplasm"
7	GO:0071013	catalytic step 2 spliceosome	39	39	GO:0005681	spliceosomal complex
7	GO:0005858	axonemal dynein complex	39	38.2	"GO:0030286, GO:0044447"	"dynein complex, axoneme part"
3	GO:0031594	neuromuscular junction	38	38	GO:0045202	synapse
5	GO:0044433	cytoplasmic vesicle part	103	37.7	"GO:0031410, GO:0044446, GO:0044444"	"cytoplasmic vesicle, intracellular organelle part, cytoplasmic part"
7	GO:0005769	early endosome	42	37.2	GO:0005768	endosome
6	GO:0005901	caveola	40	37.2	"GO:0044459, GO:0045121"	"plasma membrane part, membrane raft"
5	GO:0044391	ribosomal subunit	88	37.08	"GO:0044446, GO:0030529, GO:0044444, GO:0005840"	"intracellular organelle part, ribonucleoprotein complex, cytoplasmic part, ribosome"
6	GO:0000242	pericentriolar material	37	36.6	"GO:0005813, GO:0044450"	"centrosome, microtubule organizing center part"
7	GO:0015934	large ribosomal subunit	55	36.52	GO:0044391	ribosomal subunit
6	GO:0044448	cell cortex part	64	36.26	"GO:0044444, GO:0005938"	"cytoplasmic part, cell cortex"
7	GO:0000775	"chromosome, centromeric region"	54	35.05	GO:0044427	chromosomal part
6	GO:0035770	ribonucleoprotein granule	55	34.72	"GO:0030529, GO:0043232"	"ribonucleoprotein complex, intracellular non-membrane-bounded organelle"
6	GO:0005643	nuclear pore	34	33.8	"GO:0044428, GO:0005635, GO:0046930"	"nuclear part, nuclear envelope, pore complex"
4	GO:0044447	axoneme part	57	33.72	"GO:0044463, GO:0044422, GO:0005930, GO:0044424"	"cell projection part, organelle part, axoneme, intracellular part"
6	GO:0043195	terminal bouton	34	33.2	"GO:0043679, GO:0044456, GO:0033267"	"axon terminus, synapse part, axon part"
6	GO:0005811	lipid particle	34	33.2	GO:0044444	cytoplasmic part
6	GO:0043679	axon terminus	47	32.92	"GO:0044306, GO:0033267"	"neuron projection terminus, axon part"
9	GO:0031513	nonmotile primary cilium	52	32.88	GO:0072372	primary cilium
5	GO:0012506	vesicle membrane	99	32.42	"GO:0044464, GO:0031090, GO:0031988"	"cell part, organelle membrane, membrane-bounded vesicle"
8	GO:0005778	peroxisomal membrane	41	32.36	"GO:0031903, GO:0044439"	"microbody membrane, peroxisomal part"
7	GO:0031969	chloroplast membrane	46	32.24	"GO:0009941, GO:0044434, GO:0042170"	"chloroplast envelope, chloroplast part, plastid membrane"
7	GO:0033009	nucleomorph	32	32	"GO:0044435, GO:0043231"	"plastid part, intracellular membrane-bounded organelle"
6	GO:0022625	cytosolic large ribosomal subunit	32	32	"GO:0022626, GO:0044445, GO:0015934"	"cytosolic ribosome, cytosolic part, large ribosomal subunit"
6	GO:0044440	endosomal part	55	31.08	"GO:0044446, GO:0044444, GO:0005768"	"intracellular organelle part, cytoplasmic part, endosome"
8	GO:0000794	condensed nuclear chromosome	43	30.62	"GO:0000228, GO:0000793"	"nuclear chromosome, condensed chromosome"
7	GO:0005770	late endosome	35	30.6	GO:0005768	endosome
6	GO:0005964	phosphorylase kinase complex	30	30	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
4	GO:0043190	ATP-binding cassette (ABC) transporter complex	30	30	"GO:0043234, GO:0044425"	"protein complex, membrane part"
7	GO:0044439	peroxisomal part	56	29.62	"GO:0044438, GO:0005777"	"microbody part, peroxisome"
6	GO:0005741	mitochondrial outer membrane	35	29.48	"GO:0031966, GO:0031968"	"mitochondrial membrane, organelle outer membrane"
4	GO:0045178	basal part of cell	40	29.4	GO:0044464	cell part
4	GO:0044291	cell-cell contact zone	49	29.4	GO:0005911	cell-cell junction
6	GO:0005881	cytoplasmic microtubule	33	29.32	"GO:0044444, GO:0005874"	"cytoplasmic part, microtubule"
4	GO:0030427	site of polarized growth	43	28.94	GO:0044464	cell part
8	GO:0030141	secretory granule	51	28.12	GO:0016023	cytoplasmic membrane-bounded vesicle
6	GO:0043198	dendritic shaft	28	28	"GO:0097458, GO:0044463, GO:0030425"	"neuron part, cell projection part, dendrite"
6	GO:0000932	cytoplasmic mRNA processing body	28	28	"GO:0044444, GO:0035770"	"cytoplasmic part, ribonucleoprotein granule"
2	GO:0031012	extracellular matrix	43	27.97	GO:0005575	cellular_component
7	GO:0080008	Cul4-RING ubiquitin ligase complex	28	27.6	GO:0031461	cullin-RING ubiquitin ligase complex
3	GO:0048475	coated membrane	99	27.1	GO:0016020	membrane
5	GO:0009925	basal plasma membrane	27	27	"GO:0045178, GO:0016323, GO:0044459"	"basal part of cell, basolateral plasma membrane, plasma membrane part"
6	GO:0030863	cortical cytoskeleton	36	26.83	"GO:0005856, GO:0044448"	"cytoskeleton, cell cortex part"
6	GO:0000776	kinetochore	34	26.62	"GO:0043234, GO:0043232, GO:0000775, GO:0044427"	"protein complex, intracellular non-membrane-bounded organelle, chromosome, centromeric region, chromosomal part"
6	GO:0016528	sarcoplasm	45	26.56	GO:0005737	cytoplasm
3	GO:0019867	outer membrane	62	26.53	GO:0016020	membrane
4	GO:0031252	cell leading edge	45	25.55	GO:0044464	cell part
7	GO:0015935	small ribosomal subunit	33	25.28	GO:0044391	ribosomal subunit
7	GO:0097014	cilium cytoplasm	40	24.4	"GO:0044441, GO:0032838"	"cilium part, cell projection cytoplasm"
8	GO:0045111	intermediate filament cytoskeleton	29	24.12	GO:0005856	cytoskeleton
8	GO:0005765	lysosomal membrane	24	24	"GO:0005774, GO:0005764"	"vacuolar membrane, lysosome"
7	GO:0005795	Golgi stack	36	23.8	GO:0044431	Golgi apparatus part
7	GO:0014069	postsynaptic density	24	23.6	"GO:0044456, GO:0044463, GO:0044430"	"synapse part, cell projection part, cytoskeletal part"
8	GO:0030139	endocytic vesicle	40	23.56	GO:0016023	cytoplasmic membrane-bounded vesicle
7	GO:0009706	chloroplast inner membrane	24	23.2	"GO:0031969, GO:0009528"	"chloroplast membrane, plastid inner membrane"
4	GO:0070469	respiratory chain	28	23.12	GO:0044425	membrane part
5	GO:0031430	M band	23	23	"GO:0044449, GO:0031672"	"contractile fiber part, A band"
5	GO:0005667	transcription factor complex	30	22.82	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
9	GO:0001669	acrosomal vesicle	24	22.8	"GO:0030141, GO:0097223"	"secretory granule, sperm part"
5	GO:0044455	mitochondrial membrane part	48	22.75	"GO:0031966, GO:0044429, GO:0044425"	"mitochondrial membrane, mitochondrial part, membrane part"
8	GO:0030135	coated vesicle	65	22.66	GO:0016023	cytoplasmic membrane-bounded vesicle
6	GO:0042170	plastid membrane	50	22.54	"GO:0044435, GO:0031090, GO:0009526"	"plastid part, organelle membrane, plastid envelope"
9	GO:0030136	clathrin-coated vesicle	39	22.04	GO:0030135	coated vesicle
6	GO:0033268	node of Ranvier	22	22	"GO:0044304, GO:0033267"	"main axon, axon part"
10	GO:0001750	photoreceptor outer segment	24	22	"GO:0097458, GO:0031513"	"neuron part, nonmotile primary cilium"
5	GO:0031672	A band	31	21.8	"GO:0044449, GO:0030017"	"contractile fiber part, sarcomere"
8	GO:0030133	transport vesicle	40	21.75	GO:0016023	cytoplasmic membrane-bounded vesicle
4	GO:0005578	proteinaceous extracellular matrix	27	21.6	"GO:0044421, GO:0031012"	"extracellular region part, extracellular matrix"
5	GO:0042734	presynaptic membrane	22	21.2	"GO:0097458, GO:0097060"	"neuron part, synaptic membrane"
6	GO:0043194	axon initial segment	21	21	"GO:0044304, GO:0033267"	"main axon, axon part"
6	GO:0043197	dendritic spine	22	20.96	"GO:0044463, GO:0030425, GO:0044309"	"cell projection part, dendrite, neuron spine"
5	GO:0031968	organelle outer membrane	44	20.88	"GO:0031967, GO:0031090, GO:0019867, GO:0044424"	"organelle envelope, organelle membrane, outer membrane, intracellular part"
5	GO:0046930	pore complex	35	20.88	"GO:0016021, GO:0043234, GO:0044425"	"integral to membrane, protein complex, membrane part"
4	GO:0016469	proton-transporting two-sector ATPase complex	51	20.85	"GO:0043234, GO:0044425"	"protein complex, membrane part"
5	GO:0005839	proteasome core complex	23	20.6	"GO:0043234, GO:0044424, GO:0000502"	"protein complex, intracellular part, proteasome complex"
9	GO:0042470	melanosome	21	20.6	GO:0048770	pigment granule
5	GO:0030131	clathrin adaptor complex	21	20.2	"GO:0030118, GO:0030119"	"clathrin coat, AP-type membrane coat adaptor complex"
6	GO:0016363	nuclear matrix	20	20	"GO:0044428, GO:0034399"	"nuclear part, nuclear periphery"
8	GO:0014731	spectrin-associated cytoskeleton	20	20	GO:0005856	cytoskeleton
5	GO:0044306	neuron projection terminus	47	19.75	"GO:0097458, GO:0044463, GO:0043005"	"neuron part, cell projection part, neuron projection"
7	GO:0009523	photosystem II	22	19.6	GO:0009521	photosystem
6	GO:0032838	cell projection cytoplasm	48	19.44	"GO:0044444, GO:0044463"	"cytoplasmic part, cell projection part"
8	GO:0031903	microbody membrane	41	19.42	"GO:0031090, GO:0042579"	"organelle membrane, microbody"
5	GO:0030426	growth cone	23	19.4	"GO:0030427, GO:0097458, GO:0044463, GO:0043005"	"site of polarized growth, neuron part, cell projection part, neuron projection"
7	GO:0009543	chloroplast thylakoid lumen	19	19	"GO:0009534, GO:0044434, GO:0031978"	"chloroplast thylakoid, chloroplast part, plastid thylakoid lumen"
4	GO:0019898	extrinsic to membrane	37	18.38	GO:0044425	membrane part
7	GO:0000777	condensed chromosome kinetochore	19	18.36	"GO:0000779, GO:0000776"	"condensed chromosome, centromeric region, kinetochore"
6	GO:0031253	cell projection membrane	35	18.12	"GO:0044463, GO:0044459"	"cell projection part, plasma membrane part"
8	GO:0000329	fungal-type vacuole membrane	18	18	"GO:0000324, GO:0005774"	"fungal-type vacuole, vacuolar membrane"
9	GO:0016605	PML body	18	18	GO:0016604	nuclear body
6	GO:0005814	centriole	18	18	"GO:0005813, GO:0043232, GO:0044450"	"centrosome, intracellular non-membrane-bounded organelle, microtubule organizing center part"
6	GO:0009331	glycerol-3-phosphate dehydrogenase complex	18	18	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
5	GO:0043204	perikaryon	18	18	"GO:0043025, GO:0097458"	"neuronal cell body, neuron part"
6	GO:0010494	cytoplasmic stress granule	18	18	"GO:0044444, GO:0035770"	"cytoplasmic part, ribonucleoprotein granule"
4	GO:0033178	"proton-transporting two-sector ATPase complex, catalytic domain"	27	17.83	"GO:0043234, GO:0016469, GO:0044425"	"protein complex, proton-transporting two-sector ATPase complex, membrane part"
4	GO:0009897	external side of plasma membrane	19	17.8	"GO:0009986, GO:0044459"	"cell surface, plasma membrane part"
6	GO:0044438	microbody part	56	17.77	"GO:0044446, GO:0044444, GO:0042579"	"intracellular organelle part, cytoplasmic part, microbody"
6	GO:0070993	translation preinitiation complex	16	17.6	"GO:0030529, GO:0044444"	"ribonucleoprotein complex, cytoplasmic part"
4	GO:0097223	sperm part	31	17.52	GO:0044464	cell part
7	GO:0030666	endocytic vesicle membrane	22	17.23	"GO:0030659, GO:0030139"	"cytoplasmic vesicle membrane, endocytic vesicle"
6	GO:0009524	phragmoplast	17	17	GO:0044444	cytoplasmic part
8	GO:0005782	peroxisomal matrix	17	17	"GO:0044439, GO:0031907"	"peroxisomal part, microbody lumen"
7	GO:0043034	costamere	17	17	"GO:0044449, GO:0030016"	"contractile fiber part, myofibril"
5	GO:0005923	tight junction	17	17	"GO:0043296, GO:0070160"	"apical junction complex, occluding junction"
6	GO:0005758	mitochondrial intermembrane space	17	17	"GO:0044429, GO:0031970, GO:0005740"	"mitochondrial part, organelle envelope lumen, mitochondrial envelope"
4	GO:0001726	ruffle	20	16.8	"GO:0042995, GO:0031252"	"cell projection, cell leading edge"
5	GO:0016234	inclusion body	22	16.8	GO:0044424	intracellular part
6	GO:0019897	extrinsic to plasma membrane	26	16.56	"GO:0044459, GO:0019898"	"plasma membrane part, extrinsic to membrane"
2	GO:0009295	nucleoid	24	16.56	GO:0005575	cellular_component
8	GO:0000324	fungal-type vacuole	24	16.4	"GO:0000322, GO:0000323"	"storage vacuole, lytic vacuole"
6	GO:0005852	eukaryotic translation initiation factor 3 complex	16	16	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
7	GO:0036128	CatSper complex	16	16	GO:0005891	voltage-gated calcium channel complex
6	GO:0033270	paranode region of axon	16	16	"GO:0044304, GO:0033267"	"main axon, axon part"
6	GO:0022627	cytosolic small ribosomal subunit	16	16	"GO:0015935, GO:0022626, GO:0044445"	"small ribosomal subunit, cytosolic ribosome, cytosolic part"
10	GO:0032391	photoreceptor connecting cilium	16	16	GO:0031513	nonmotile primary cilium
7	GO:0017119	Golgi transport complex	16	16	"GO:0044431, GO:0043234"	"Golgi apparatus part, protein complex"
7	GO:0036064	cilium basal body	16	16	"GO:0044441, GO:0005932"	"cilium part, microtubule basal body"
7	GO:0010287	plastoglobule	16	16	"GO:0044434, GO:0009570"	"chloroplast part, chloroplast stroma"
6	GO:0030532	small nuclear ribonucleoprotein complex	22	15.8	"GO:0030529, GO:0044428"	"ribonucleoprotein complex, nuclear part"
7	GO:0032592	integral to mitochondrial membrane	20	15.6	"GO:0031301, GO:0044455"	"integral to organelle membrane, mitochondrial membrane part"
5	GO:0030992	intraflagellar transport particle B	15	15	"GO:0030990, GO:0043234, GO:0044447"	"intraflagellar transport particle, protein complex, axoneme part"
7	GO:0005869	dynactin complex	15	15	"GO:0015629, GO:0005875"	"actin cytoskeleton, microtubule associated complex"
10	GO:0008021	synaptic vesicle	16	14.96	"GO:0044456, GO:0030136"	"synapse part, clathrin-coated vesicle"
3	GO:0032993	protein-DNA complex	28	14.86	GO:0032991	macromolecular complex
7	GO:0000781	"chromosome, telomeric region"	20	14.64	GO:0044427	chromosomal part
7	GO:0005657	replication fork	28	14.58	GO:0044427	chromosomal part
5	GO:0031970	organelle envelope lumen	24	14.4	"GO:0044446, GO:0031967, GO:0031974"	"intracellular organelle part, organelle envelope, membrane-enclosed lumen"
6	GO:0030120	vesicle coat	25	14.11	"GO:0030117, GO:0044433, GO:0030662"	"membrane coat, cytoplasmic vesicle part, coated vesicle membrane"
7	GO:0016282	eukaryotic 43S preinitiation complex	14	14	GO:0070993	translation preinitiation complex
6	GO:0034399	nuclear periphery	22	14	"GO:0044428, GO:0031981"	"nuclear part, nuclear lumen"
7	GO:0008180	COP9 signalosome	14	14	"GO:0044428, GO:0043234"	"nuclear part, protein complex"
8	GO:0000790	nuclear chromatin	19	13.96	"GO:0044454, GO:0000785"	"nuclear chromosome part, chromatin"
4	GO:0030119	AP-type membrane coat adaptor complex	24	13.92	"GO:0044444, GO:0043234, GO:0030117, GO:0044425"	"cytoplasmic part, protein complex, membrane coat, membrane part"
6	GO:0009528	plastid inner membrane	24	13.92	"GO:0042170, GO:0019866"	"plastid membrane, organelle inner membrane"
5	GO:0033176	proton-transporting V-type ATPase complex	25	13.68	GO:0016469	proton-transporting two-sector ATPase complex
7	GO:0055037	recycling endosome	15	13.4	GO:0005768	endosome
7	GO:0030990	intraflagellar transport particle	21	13	"GO:0043234, GO:0044447"	"protein complex, axoneme part"
5	GO:0033179	"proton-transporting V-type ATPase, V0 domain"	15	13	"GO:0033176, GO:0033177"	"proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex, proton-transporting domain"
6	GO:0031985	Golgi cisterna	20	13	"GO:0044431, GO:0005795, GO:0031984"	"Golgi apparatus part, Golgi stack, organelle subcompartment"
6	GO:0016281	eukaryotic translation initiation factor 4F complex	13	13	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
6	GO:0000786	nucleosome	13	13	"GO:0032993, GO:0000785, GO:0044427"	"protein-DNA complex, chromatin, chromosomal part"
6	GO:0030173	integral to Golgi membrane	13	13	"GO:0031301, GO:0031228"	"integral to organelle membrane, intrinsic to Golgi membrane"
8	GO:0043596	nuclear replication fork	18	12.96	"GO:0044454, GO:0005657"	"nuclear chromosome part, replication fork"
4	GO:0009521	photosystem	25	12.84	"GO:0044436, GO:0034357, GO:0043234, GO:0044425"	"thylakoid part, photosynthetic membrane, protein complex, membrane part"
6	GO:0031977	thylakoid lumen	25	12.84	GO:0044436	thylakoid part
7	GO:0000779	"condensed chromosome, centromeric region"	22	12.82	"GO:0000793, GO:0000775"	"condensed chromosome, chromosome, centromeric region"
7	GO:0055029	nuclear DNA-directed RNA polymerase complex	21	12.72	"GO:0044428, GO:0000428"	"nuclear part, DNA-directed RNA polymerase complex"
8	GO:0016591	"DNA-directed RNA polymerase II, holoenzyme"	19	12.6	"GO:0044451, GO:0055029"	"nucleoplasm part, nuclear DNA-directed RNA polymerase complex"
7	GO:0005865	striated muscle thin filament	15	12.6	"GO:0015629, GO:0036379, GO:0030017, GO:0044430"	"actin cytoskeleton, myofilament, sarcomere, cytoskeletal part"
5	GO:0030313	cell envelope	21	12.6	GO:0031975	envelope
6	GO:0044309	neuron spine	22	12.58	GO:0043005	neuron projection
3	GO:0044420	extracellular matrix part	20	12.48	"GO:0005575, GO:0031012"	"cellular_component, extracellular matrix"
5	GO:0005902	microvillus	14	12.4	GO:0042995	cell projection
8	GO:0048770	pigment granule	21	12.36	GO:0016023	cytoplasmic membrane-bounded vesicle
5	GO:0045259	proton-transporting ATP synthase complex	20	12.07	"GO:0016469, GO:0044424"	"proton-transporting two-sector ATPase complex, intracellular part"
7	GO:0033290	eukaryotic 48S preinitiation complex	12	12	GO:0070993	translation preinitiation complex
5	GO:0035371	microtubule plus end	12	12	"GO:0005874, GO:0044430"	"microtubule, cytoskeletal part"
6	GO:0032541	cortical endoplasmic reticulum	12	12	"GO:0071782, GO:0044448"	"endoplasmic reticulum tubular network, cell cortex part"
4	GO:0009349	riboflavin synthase complex	12	12	"GO:0044464, GO:0043234"	"cell part, protein complex"
6	GO:0045169	fusome	12	12	GO:0044444	cytoplasmic part
7	GO:0005884	actin filament	16	12	"GO:0015629, GO:0043234, GO:0044430"	"actin cytoskeleton, protein complex, cytoskeletal part"
5	GO:0000159	protein phosphatase type 2A complex	12	12	"GO:0008287, GO:0044424"	"protein serine/threonine phosphatase complex, intracellular part"
6	GO:0032580	Golgi cisterna membrane	12	12	"GO:0031985, GO:0000139"	"Golgi cisterna, Golgi membrane"
7	GO:0033018	sarcoplasmic reticulum lumen	12	12	"GO:0016529, GO:0005788"	"sarcoplasmic reticulum, endoplasmic reticulum lumen"
7	GO:0031901	early endosome membrane	12	12	"GO:0010008, GO:0005769"	"endosome membrane, early endosome"
6	GO:0070062	extracellular vesicular exosome	12	12	"GO:0065010, GO:0031988"	"extracellular membrane-bounded organelle, membrane-bounded vesicle"
7	GO:0060170	cilium membrane	14	12	"GO:0031090, GO:0044441, GO:0031253"	"organelle membrane, cilium part, cell projection membrane"
4	GO:0036062	presynaptic periactive zone	12	12	GO:0044456	synapse part
9	GO:0030134	ER to Golgi transport vesicle	18	11.84	"GO:0030133, GO:0030135"	"transport vesicle, coated vesicle"
7	GO:0036379	myofilament	22	11.76	"GO:0044449, GO:0030016"	"contractile fiber part, myofibril"
7	GO:0030662	coated vesicle membrane	30	11.56	"GO:0030135, GO:0030659"	"coated vesicle, cytoplasmic vesicle membrane"
4	GO:0005202	collagen	13	11.56	"GO:0044421, GO:0044420, GO:0005578"	"extracellular region part, extracellular matrix part, proteinaceous extracellular matrix"
6	GO:0009898	internal side of plasma membrane	19	11.56	GO:0044459	plasma membrane part
6	GO:0031978	plastid thylakoid lumen	19	11.4	"GO:0031976, GO:0044435, GO:0031977"	"plastid thylakoid, plastid part, thylakoid lumen"
4	GO:0044462	external encapsulating structure part	19	11.4	"GO:0044464, GO:0030312"	"cell part, external encapsulating structure"
8	GO:0005798	Golgi-associated vesicle	26	11.38	"GO:0044431, GO:0016023"	"Golgi apparatus part, cytoplasmic membrane-bounded vesicle"
8	GO:0030140	trans-Golgi network transport vesicle	13	11.08	"GO:0030133, GO:0005798, GO:0030136"	"transport vesicle, Golgi-associated vesicle, clathrin-coated vesicle"
7	GO:0035145	exon-exon junction complex	11	11	"GO:0044428, GO:0043234"	"nuclear part, protein complex"
7	GO:0030864	cortical actin cytoskeleton	13	11	"GO:0015629, GO:0030863, GO:0044430"	"actin cytoskeleton, cortical cytoskeleton, cytoskeletal part"
7	GO:0032040	small-subunit processome	11	11	GO:0030684	preribosome
5	GO:0005954	calcium- and calmodulin-dependent protein kinase complex	11	11	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
7	GO:0005801	cis-Golgi network	11	11	GO:0043231	intracellular membrane-bounded organelle
9	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	11	11	GO:0005849	mRNA cleavage factor complex
4	GO:0030027	lamellipodium	11	11	"GO:0042995, GO:0031252"	"cell projection, cell leading edge"
7	GO:0005779	integral to peroxisomal membrane	11	11	"GO:0031301, GO:0031231"	"integral to organelle membrane, intrinsic to peroxisomal membrane"
8	GO:0005834	heterotrimeric G-protein complex	11	11	"GO:0031234, GO:0043234"	"extrinsic to internal side of plasma membrane, protein complex"
4	GO:0033177	"proton-transporting two-sector ATPase complex, proton-transporting domain"	21	10.92	"GO:0043234, GO:0016469, GO:0044425"	"protein complex, proton-transporting two-sector ATPase complex, membrane part"
6	GO:0030684	preribosome	15	10.8	GO:0030529	ribonucleoprotein complex
4	GO:0005933	cellular bud	13	10.7	GO:0044464	cell part
4	GO:0005935	cellular bud neck	11	10.56	"GO:0030427, GO:0005933"	"site of polarized growth, cellular bud"
7	GO:0005776	autophagic vacuole	12	10.4	GO:0005773	vacuole
7	GO:0031907	microbody lumen	17	10.2	"GO:0070013, GO:0044438"	"intracellular organelle lumen, microbody part"
4	GO:0070160	occluding junction	17	10.2	GO:0005911	cell-cell junction
7	GO:0005882	intermediate filament	11	10.2	"GO:0043234, GO:0045111, GO:0044430"	"protein complex, intermediate filament cytoskeleton, cytoskeletal part"
4	GO:0043296	apical junction complex	17	10.2	GO:0005911	cell-cell junction
8	GO:0014701	junctional sarcoplasmic reticulum membrane	10	10	GO:0033017	sarcoplasmic reticulum membrane
4	GO:0046581	intercellular canaliculus	10	10	GO:0005911	cell-cell junction
5	GO:0009279	cell outer membrane	10	10	"GO:0044462, GO:0019867, GO:0030313"	"external encapsulating structure part, outer membrane, cell envelope"
8	GO:0030896	checkpoint clamp complex	10	10	"GO:0044454, GO:0043234, GO:0000794"	"nuclear chromosome part, protein complex, condensed nuclear chromosome"
9	GO:0016939	kinesin II complex	10	10	GO:0005871	kinesin complex
6	GO:0005844	polysome	10	10	GO:0030529	ribonucleoprotein complex
6	GO:0031597	cytosolic proteasome complex	10	10	"GO:0000502, GO:0044445"	"proteasome complex, cytosolic part"
7	GO:0019005	SCF ubiquitin ligase complex	10	10	GO:0031461	cullin-RING ubiquitin ligase complex
4	GO:0042597	periplasmic space	14	10	GO:0044464	cell part
5	GO:0045261	"proton-transporting ATP synthase complex, catalytic core F(1)"	12	9.92	"GO:0033178, GO:0045259, GO:0044424"	"proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, intracellular part"
7	GO:0030658	transport vesicle membrane	18	9.92	"GO:0030659, GO:0030133, GO:0012505"	"cytoplasmic vesicle membrane, transport vesicle, endomembrane system"
7	GO:0005791	rough endoplasmic reticulum	13	9.9	GO:0005783	endoplasmic reticulum
7	GO:0000322	storage vacuole	24	9.84	GO:0005773	vacuole
5	GO:0000178	exosome (RNase complex)	11	9.8	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
8	GO:0000784	"nuclear chromosome, telomeric region"	11	9.4	"GO:0044454, GO:0000781"	"nuclear chromosome part, chromosome, telomeric region"
5	GO:0048786	presynaptic active zone	10	9.2	"GO:0097458, GO:0044456"	"neuron part, synapse part"
6	GO:0071203	WASH complex	9	9	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
5	GO:0030288	outer membrane-bounded periplasmic space	9	9	"GO:0044462, GO:0042597, GO:0030313"	"external encapsulating structure part, periplasmic space, cell envelope"
7	GO:0009533	chloroplast stromal thylakoid	9	9	"GO:0009570, GO:0009534"	"chloroplast stroma, chloroplast thylakoid"
5	GO:0005925	focal adhesion	9	9	GO:0005924	cell-substrate adherens junction
7	GO:0030127	COPII vesicle coat	9	9	"GO:0030120, GO:0012507"	"vesicle coat, ER to Golgi transport vesicle membrane"
7	GO:0071011	precatalytic spliceosome	9	9	GO:0005681	spliceosomal complex
5	GO:0031941	filamentous actin	9	9	"GO:0043234, GO:0005884, GO:0044430"	"protein complex, actin filament, cytoskeletal part"
6	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	11	9	"GO:0044444, GO:0043231"	"cytoplasmic part, intracellular membrane-bounded organelle"
8	GO:0005665	"DNA-directed RNA polymerase II, core complex"	9	9	"GO:0044451, GO:0055029, GO:0016591"	"nucleoplasm part, nuclear DNA-directed RNA polymerase complex, DNA-directed RNA polymerase II, holoenzyme"
9	GO:0015030	Cajal body	9	9	GO:0016604	nuclear body
5	GO:0032154	cleavage furrow	9	9	GO:0032155	cell division site part
4	GO:0009341	beta-galactosidase complex	9	9	GO:0043234	protein complex
5	GO:0016471	vacuolar proton-transporting V-type ATPase complex	12	8.8	"GO:0005774, GO:0044437, GO:0033176"	"vacuolar membrane, vacuolar part, proton-transporting V-type ATPase complex"
9	GO:0045335	phagocytic vesicle	11	8.6	GO:0030139	endocytic vesicle
8	GO:0072686	mitotic spindle	9	8.6	GO:0005819	spindle
7	GO:0042641	actomyosin	12	8.4	"GO:0015629, GO:0044430"	"actin cytoskeleton, cytoskeletal part"
7	GO:0005775	vacuolar lumen	12	8.4	"GO:0044437, GO:0070013"	"vacuolar part, intracellular organelle lumen"
7	GO:0043186	P granule	9	8.2	"GO:0060293, GO:0044444, GO:0035770"	"germ plasm, cytoplasmic part, ribonucleoprotein granule"
8	GO:0030665	clathrin-coated vesicle membrane	13	8.07	"GO:0030662, GO:0030136"	"coated vesicle membrane, clathrin-coated vesicle"
8	GO:0000792	heterochromatin	11	8.04	GO:0000785	chromatin
6	GO:0032839	dendrite cytoplasm	8	8	"GO:0097458, GO:0032838, GO:0030425"	"neuron part, cell projection cytoplasm, dendrite"
8	GO:0043202	lysosomal lumen	8	8	"GO:0005775, GO:0005764"	"vacuolar lumen, lysosome"
7	GO:0005680	anaphase-promoting complex	8	8	"GO:0031461, GO:0000152"	"cullin-RING ubiquitin ligase complex, nuclear ubiquitin ligase complex"
7	GO:0017146	N-methyl-D-aspartate selective glutamate receptor complex	8	8	GO:0008328	ionotropic glutamate receptor complex
7	GO:0034663	endoplasmic reticulum chaperone complex	8	8	"GO:0044432, GO:0043234"	"endoplasmic reticulum part, protein complex"
7	GO:0031307	integral to mitochondrial outer membrane	8	8	"GO:0032592, GO:0031306"	"integral to mitochondrial membrane, intrinsic to mitochondrial outer membrane"
6	GO:0010319	stromule	8	8	"GO:0044435, GO:0009526"	"plastid part, plastid envelope"
7	GO:0000015	phosphopyruvate hydratase complex	8	8	"GO:0043234, GO:0044445"	"protein complex, cytosolic part"
6	GO:0044295	axonal growth cone	8	8	"GO:0033267, GO:0030426"	"axon part, growth cone"
5	GO:0032587	ruffle membrane	8	8	"GO:0031256, GO:0001726, GO:0031253"	"leading edge membrane, ruffle, cell projection membrane"
7	GO:0033017	sarcoplasmic reticulum membrane	12	8	"GO:0005789, GO:0016529"	"endoplasmic reticulum membrane, sarcoplasmic reticulum"
6	GO:0005663	DNA replication factor C complex	8	8	"GO:0043234, GO:0005657, GO:0044427"	"protein complex, replication fork, chromosomal part"
7	GO:0030126	COPI vesicle coat	8	8	"GO:0044431, GO:0030663, GO:0030120"	"Golgi apparatus part, COPI-coated vesicle membrane, vesicle coat"
6	GO:0030660	Golgi-associated vesicle membrane	15	7.96	"GO:0030659, GO:0005798, GO:0012505, GO:0000139"	"cytoplasmic vesicle membrane, Golgi-associated vesicle, endomembrane system, Golgi membrane"
4	GO:0031256	leading edge membrane	16	7.92	"GO:0031252, GO:0044459"	"cell leading edge, plasma membrane part"
4	GO:0043235	receptor complex	16	7.84	GO:0043234	protein complex
5	GO:0032300	mismatch repair complex	11	7.8	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
5	GO:0031228	intrinsic to Golgi membrane	13	7.8	"GO:0044431, GO:0000139, GO:0031300"	"Golgi apparatus part, Golgi membrane, intrinsic to organelle membrane"
7	GO:0030667	secretory granule membrane	15	7.8	"GO:0030141, GO:0030659, GO:0012505"	"secretory granule, cytoplasmic vesicle membrane, endomembrane system"
8	GO:0000803	sex chromosome	9	7.72	GO:0005694	chromosome
6	GO:0000428	DNA-directed RNA polymerase complex	21	7.63	GO:0030880	RNA polymerase complex
4	GO:0042555	MCM complex	8	7.6	GO:0043234	protein complex
8	GO:0005849	mRNA cleavage factor complex	12	7.6	"GO:0044451, GO:0043234"	"nucleoplasm part, protein complex"
7	GO:0005942	phosphatidylinositol 3-kinase complex	8	7.6	"GO:0043234, GO:0044445"	"protein complex, cytosolic part"
6	GO:0009277	fungal-type cell wall	8	7.6	GO:0005618	cell wall
6	GO:0048500	signal recognition particle	10	7.4	"GO:0030529, GO:0044444"	"ribonucleoprotein complex, cytoplasmic part"
5	GO:0005838	proteasome regulatory particle	11	7.4	"GO:0043234, GO:0022624, GO:0044424"	"protein complex, proteasome accessory complex, intracellular part"
7	GO:0071782	endoplasmic reticulum tubular network	12	7.2	GO:0044432	endoplasmic reticulum part
5	GO:0065010	extracellular membrane-bounded organelle	12	7.2	"GO:0043230, GO:0043227"	"extracellular organelle, membrane-bounded organelle"
7	GO:0000313	organellar ribosome	16	7.2	"GO:0005840, GO:0044422"	"ribosome, organelle part"
7	GO:0042824	MHC class I peptide loading complex	10	7.2	"GO:0044432, GO:0043234, GO:0030176, GO:0044425"	"endoplasmic reticulum part, protein complex, integral to endoplasmic reticulum membrane, membrane part"
6	GO:0000315	organellar large ribosomal subunit	10	7.2	"GO:0000313, GO:0015934"	"organellar ribosome, large ribosomal subunit"
7	GO:0009707	chloroplast outer membrane	8	7.2	"GO:0031969, GO:0009527"	"chloroplast membrane, plastid outer membrane"
6	GO:0005753	mitochondrial proton-transporting ATP synthase complex	10	7.12	"GO:0005743, GO:0044455, GO:0045259"	"mitochondrial inner membrane, mitochondrial membrane part, proton-transporting ATP synthase complex"
4	GO:0005905	coated pit	10	7.12	"GO:0044464, GO:0044425, GO:0012505"	"cell part, membrane part, endomembrane system"
5	GO:0030014	CCR4-NOT complex	7	7	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
7	GO:0005832	chaperonin-containing T-complex	7	7	"GO:0043234, GO:0044445"	"protein complex, cytosolic part"
6	GO:0045179	apical cortex	7	7	"GO:0045177, GO:0044448"	"apical part of cell, cell cortex part"
8	GO:0031088	platelet dense granule membrane	7	7	"GO:0042827, GO:0030667"	"platelet dense granule, secretory granule membrane"
7	GO:0031902	late endosome membrane	7	7	"GO:0005770, GO:0010008"	"late endosome, endosome membrane"
6	GO:0031201	SNARE complex	7	7	"GO:0044444, GO:0043234, GO:0044425"	"cytoplasmic part, protein complex, membrane part"
7	GO:0005885	Arp2/3 protein complex	7	7	"GO:0015629, GO:0043234, GO:0044430"	"actin cytoskeleton, protein complex, cytoskeletal part"
5	GO:0002095	caveolar macromolecular signaling complex	7	7	"GO:0005901, GO:0043234, GO:0044459"	"caveola, protein complex, plasma membrane part"
6	GO:0042645	mitochondrial nucleoid	7	7	"GO:0005759, GO:0043232, GO:0044429, GO:0009295"	"mitochondrial matrix, intracellular non-membrane-bounded organelle, mitochondrial part, nucleoid"
7	GO:0017071	intracellular cyclic nucleotide activated cation channel complex	7	7	GO:0034703	cation channel complex
8	GO:0005797	Golgi medial cisterna	7	7	GO:0031985	Golgi cisterna
7	GO:0005786	"signal recognition particle, endoplasmic reticulum targeting"	7	7	GO:0048500	signal recognition particle
5	GO:0000131	incipient cellular bud site	7	7	GO:0044424	intracellular part
5	GO:0043332	mating projection tip	7	7	"GO:0030427, GO:0044463, GO:0005937"	"site of polarized growth, cell projection part, mating projection"
5	GO:0005727	extrachromosomal circular DNA	7	7	"GO:0046821, GO:0044424"	"extrachromosomal DNA, intracellular part"
6	GO:0042405	nuclear inclusion body	7	7	"GO:0044428, GO:0016234"	"nuclear part, inclusion body"
5	GO:0005863	striated muscle myosin thick filament	7	7	"GO:0036379, GO:0005859, GO:0030017, GO:0032982"	"myofilament, muscle myosin complex, sarcomere, myosin filament"
5	GO:0005845	mRNA cap binding complex	7	7	"GO:0044424, GO:0034518"	"intracellular part, RNA cap binding complex"
6	GO:0000152	nuclear ubiquitin ligase complex	11	7	"GO:0044428, GO:0000151"	"nuclear part, ubiquitin ligase complex"
5	GO:0090406	pollen tube	7	7	GO:0042995	cell projection
5	GO:0008540	"proteasome regulatory particle, base subcomplex"	7	7	"GO:0043234, GO:0005838, GO:0044424"	"protein complex, proteasome regulatory particle, intracellular part"
6	GO:0005641	nuclear envelope lumen	7	7	"GO:0044428, GO:0005635, GO:0031970"	"nuclear part, nuclear envelope, organelle envelope lumen"
4	GO:0042825	TAP complex	7	7	"GO:0044432, GO:0043234, GO:0044425, GO:0042824"	"endoplasmic reticulum part, protein complex, membrane part, MHC class I peptide loading complex"
7	GO:0016272	prefoldin complex	7	7	"GO:0043234, GO:0044445"	"protein complex, cytosolic part"
8	GO:0001725	stress fiber	7	7	"GO:0032432, GO:0042641"	"actin filament bundle, actomyosin"
8	GO:0000780	"condensed nuclear chromosome, centromeric region"	10	6.96	"GO:0044454, GO:0000779, GO:0000794"	"nuclear chromosome part, condensed chromosome, centromeric region, condensed nuclear chromosome"
8	GO:0000118	histone deacetylase complex	7	6.96	"GO:0044451, GO:0043234"	"nucleoplasm part, protein complex"
4	GO:0034358	plasma lipoprotein particle	8	6.96	"GO:0005615, GO:0044421, GO:0032994"	"extracellular space, extracellular region part, protein-lipid complex"
8	GO:0035097	histone methyltransferase complex	10	6.92	"GO:0044451, GO:0034708"	"nucleoplasm part, methyltransferase complex"
4	GO:0005604	basement membrane	8	6.8	"GO:0044421, GO:0044420, GO:0005578"	"extracellular region part, extracellular matrix part, proteinaceous extracellular matrix"
8	GO:0016461	unconventional myosin complex	8	6.8	GO:0016459	myosin complex
4	GO:0032155	cell division site part	10	6.72	"GO:0032153, GO:0044464"	"cell division site, cell part"
5	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	7	6.6	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
5	GO:0031234	extrinsic to internal side of plasma membrane	11	6.6	"GO:0019897, GO:0009898, GO:0044424"	"extrinsic to plasma membrane, internal side of plasma membrane, intracellular part"
7	GO:0000778	condensed nuclear chromosome kinetochore	7	6.6	"GO:0044454, GO:0000780, GO:0000777"	"nuclear chromosome part, condensed nuclear chromosome, centromeric region, condensed chromosome kinetochore"
8	GO:0031261	DNA replication preinitiation complex	7	6.6	"GO:0044451, GO:0032993"	"nucleoplasm part, protein-DNA complex"
6	GO:0031231	intrinsic to peroxisomal membrane	11	6.6	"GO:0005778, GO:0044439, GO:0031300"	"peroxisomal membrane, peroxisomal part, intrinsic to organelle membrane"
5	GO:0005816	spindle pole body	7	6.6	"GO:0043234, GO:0000922, GO:0005815"	"protein complex, spindle pole, microtubule organizing center"
2	GO:0019012	virion	11	6.58	GO:0005575	cellular_component
7	GO:0030125	clathrin vesicle coat	9	6.52	"GO:0030120, GO:0030665, GO:0030118"	"vesicle coat, clathrin-coated vesicle membrane, clathrin coat"
8	GO:0012507	ER to Golgi transport vesicle membrane	10	6.4	"GO:0030662, GO:0030134, GO:0030658"	"coated vesicle membrane, ER to Golgi transport vesicle, transport vesicle membrane"
9	GO:0036126	sperm flagellum	8	6.4	"GO:0097223, GO:0031514"	"sperm part, motile cilium"
6	GO:0044798	nuclear transcription factor complex	11	6.36	"GO:0044428, GO:0005667"	"nuclear part, transcription factor complex"
7	GO:0005859	muscle myosin complex	9	6.2	"GO:0016460, GO:0044449"	"myosin II complex, contractile fiber part"
7	GO:0032432	actin filament bundle	9	6.2	"GO:0015629, GO:0044430"	"actin cytoskeleton, cytoskeletal part"
5	GO:0030880	RNA polymerase complex	24	6.14	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
9	GO:0001673	male germ cell nucleus	6	6	GO:0043073	germ cell nucleus
6	GO:0071204	histone pre-mRNA 3'end processing complex	6	6	"GO:0030529, GO:0044428"	"ribonucleoprotein complex, nuclear part"
6	GO:0005853	eukaryotic translation elongation factor 1 complex	6	6	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
8	GO:0044354	macropinosome	6	6	GO:0044352	pinosome
5	GO:0048269	methionine adenosyltransferase complex	6	6	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
5	GO:0042575	DNA polymerase complex	10	6	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
8	GO:0030670	phagocytic vesicle membrane	6	6	"GO:0045335, GO:0030666"	"phagocytic vesicle, endocytic vesicle membrane"
5	GO:0005937	mating projection	10	6	GO:0042995	cell projection
5	GO:0009654	oxygen evolving complex	6	6	"GO:0044436, GO:0043234, GO:0044425, GO:0009523"	"thylakoid part, protein complex, membrane part, photosystem II"
6	GO:0005861	troponin complex	6	6	"GO:0044449, GO:0043234, GO:0005865, GO:0044430"	"contractile fiber part, protein complex, striated muscle thin filament, cytoskeletal part"
7	GO:0030686	90S preribosome	6	6	GO:0030684	preribosome
9	GO:0005873	plus-end kinesin complex	6	6	GO:0005871	kinesin complex
6	GO:0016235	aggresome	6	6	GO:0016234	inclusion body
6	GO:0005868	cytoplasmic dynein complex	6	6	"GO:0030286, GO:0044444"	"dynein complex, cytoplasmic part"
7	GO:0055120	striated muscle dense body	6	6	GO:0044449	contractile fiber part
8	GO:0071942	XPC complex	6	6	GO:0000109	nucleotide-excision repair complex
6	GO:0000235	astral microtubule	6	6	"GO:0005881, GO:0005818, GO:0005876"	"cytoplasmic microtubule, aster, spindle microtubule"
5	GO:0019773	"proteasome core complex, alpha-subunit complex"	6	6	"GO:0005839, GO:0043234, GO:0044424"	"proteasome core complex, protein complex, intracellular part"
6	GO:0032389	MutLalpha complex	6	6	"GO:0044428, GO:0032300"	"nuclear part, mismatch repair complex"
8	GO:0000795	synaptonemal complex	7	5.8	"GO:0044454, GO:0000794"	"nuclear chromosome part, condensed nuclear chromosome"
5	GO:0005818	aster	8	5.6	"GO:0005819, GO:0043234, GO:0043232, GO:0044430"	"spindle, protein complex, intracellular non-membrane-bounded organelle, cytoskeletal part"
8	GO:0005700	polytene chromosome	8	5.6	GO:0005694	chromosome
5	GO:0030076	light-harvesting complex	6	5.6	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
4	GO:0005934	cellular bud tip	6	5.6	"GO:0030427, GO:0005933"	"site of polarized growth, cellular bud"
6	GO:0005761	mitochondrial ribosome	8	5.6	"GO:0005759, GO:0000313, GO:0044429"	"mitochondrial matrix, organellar ribosome, mitochondrial part"
5	GO:0022624	proteasome accessory complex	12	5.44	"GO:0043234, GO:0044424, GO:0000502"	"protein complex, intracellular part, proteasome complex"
7	GO:0000109	nucleotide-excision repair complex	9	5.4	"GO:0044428, GO:0043234"	"nuclear part, protein complex"
5	GO:0031225	anchored to membrane	7	5.4	GO:0031224	intrinsic to membrane
6	GO:0008328	ionotropic glutamate receptor complex	9	5.4	"GO:0043235, GO:0005887, GO:0044459, GO:0034702"	"receptor complex, integral to plasma membrane, plasma membrane part, ion channel complex"
4	GO:0034518	RNA cap binding complex	9	5.4	GO:0043234	protein complex
4	GO:0005924	cell-substrate adherens junction	9	5.4	"GO:0005912, GO:0030055"	"adherens junction, cell-substrate junction"
6	GO:0045239	tricarboxylic acid cycle enzyme complex	10	5.38	"GO:0044444, GO:0043234"	"cytoplasmic part, protein complex"
6	GO:0009527	plastid outer membrane	9	5.32	"GO:0031968, GO:0042170"	"organelle outer membrane, plastid membrane"
6	GO:0005746	mitochondrial respiratory chain	8	5.2	"GO:0005743, GO:0070469, GO:0044455"	"mitochondrial inner membrane, respiratory chain, mitochondrial membrane part"
5	GO:0032589	neuron projection membrane	8	5.2	"GO:0031256, GO:0097458, GO:0043005, GO:0031253"	"leading edge membrane, neuron part, neuron projection, cell projection membrane"
4	GO:0030132	clathrin coat of coated pit	6	5.2	"GO:0005905, GO:0044459, GO:0030118"	"coated pit, plasma membrane part, clathrin coat"
9	GO:0000805	X chromosome	6	5.2	GO:0000803	sex chromosome
5	GO:0045263	"proton-transporting ATP synthase complex, coupling factor F(o)"	6	5.2	"GO:0045259, GO:0044424, GO:0033177"	"proton-transporting ATP synthase complex, intracellular part, proton-transporting two-sector ATPase complex, proton-transporting domain"
3	GO:0032994	protein-lipid complex	9	5.18	GO:0032991	macromolecular complex
10	GO:0097208	alveolar lamellar body	7	5	GO:0042599	lamellar body
7	GO:0060293	germ plasm	9	4.92	GO:0045495	pole plasm
5	GO:0034708	methyltransferase complex	12	4.87	"GO:0043234, GO:0044424"	"protein complex, intracellular part"
4	GO:0005912	adherens junction	11	4.84	GO:0070161	anchoring junction
5	GO:0033180	"proton-transporting V-type ATPase, V1 domain"	6	4.8	"GO:0033176, GO:0033178"	"proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex, catalytic domain"
7	GO:0010369	chromocenter	6	4.8	GO:0044427	chromosomal part
8	GO:0030663	COPI-coated vesicle membrane	8	4.8	"GO:0030662, GO:0030660, GO:0030137"	"coated vesicle membrane, Golgi-associated vesicle membrane, COPI-coated vesicle"
6	GO:0031306	intrinsic to mitochondrial outer membrane	8	4.8	"GO:0005741, GO:0031300, GO:0044455"	"mitochondrial outer membrane, intrinsic to organelle membrane, mitochondrial membrane part"
8	GO:0016460	myosin II complex	10	4.72	GO:0016459	myosin complex
9	GO:0045334	clathrin-coated endocytic vesicle	7	4.63	"GO:0030139, GO:0030136"	"endocytic vesicle, clathrin-coated vesicle"
7	GO:0008278	cohesin complex	6	4.56	"GO:0000793, GO:0043234, GO:0044427"	"condensed chromosome, protein complex, chromosomal part"
9	GO:0000930	gamma-tubulin complex	6	4.42	"GO:0043234, GO:0044450"	"protein complex, microtubule organizing center part"
4	GO:0043230	extracellular organelle	12	4.32	"GO:0044421, GO:0043226"	"extracellular region part, organelle"
9	GO:0042827	platelet dense granule	7	4.2	GO:0030141	secretory granule
8	GO:0032982	myosin filament	7	4.2	GO:0016459	myosin complex
5	GO:0046821	extrachromosomal DNA	7	4.2	GO:0044424	intracellular part
4	GO:0032153	cell division site	10	4.03	GO:0044464	cell part
5	GO:0005903	brush border	6	4	GO:0042995	cell projection
5	GO:0001411	hyphal tip	6	4	GO:0030427	site of polarized growth
8	GO:0008023	transcription elongation factor complex	6	4	"GO:0044451, GO:0043234"	"nucleoplasm part, protein complex"
7	GO:0045240	dihydrolipoyl dehydrogenase complex	7	3.96	GO:0045239	tricarboxylic acid cycle enzyme complex
8	GO:0030137	COPI-coated vesicle	9	3.88	"GO:0005798, GO:0030135"	"Golgi-associated vesicle, coated vesicle"
7	GO:0044352	pinosome	6	3.6	GO:0005768	endosome
8	GO:0043073	germ cell nucleus	6	3.6	GO:0005634	nucleus
7	GO:0043601	nuclear replisome	6	3.6	"GO:0044454, GO:0030894, GO:0043596"	"nuclear chromosome part, replisome, nuclear replication fork"
6	GO:0042646	plastid nucleoid	6	3.6	"GO:0044435, GO:0043232, GO:0009532, GO:0009295"	"plastid part, intracellular non-membrane-bounded organelle, plastid stroma, nucleoid"
3	GO:0070161	anchoring junction	12	3.5	GO:0030054	cell junction
3	GO:0030055	cell-substrate junction	9	3.24	GO:0030054	cell junction
9	GO:0042599	lamellar body	7	3	GO:0030141	secretory granule
6	GO:0045495	pole plasm	9	2.95	GO:0005737	cytoplasm
3	GO:0044423	virion part	6	2.64	"GO:0005575, GO:0019012"	"cellular_component, virion"
6	GO:0030894	replisome	6	2.16	"GO:0032993, GO:0005657, GO:0044427"	"protein-DNA complex, replication fork, chromosomal part"