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["Table S2 Gene model annotation with GFF3 format of miRNA precursors in B.rapa"]
[]
["A04","blat","gene",11297029,11297115,100,"-",".","ID=bra-MIR156a-1;Name=bra-MIR156a-1"]
["A04","blat","exon",11297029,11297115,100,"-",".","Parent=bra-MIR156a-1"]
["A09","blat","gene",31052687,31052777,100,"+",".","ID=bra-MIR156a-2;Name=bra-MIR156a-2"]
["A09","blat","exon",31052687,31052777,100,"+",".","Parent=bra-MIR156a-2"]
["A01","blat","gene",3145123,3145222,100,"-",".","ID=bra-MIR156b-1;Name=bra-MIR156b-1"]
["A01","blat","exon",3145123,3145222,100,"-",".","Parent=bra-MIR156b-1"]
["A03","blat","gene",28108119,28108266,100,"+",".","ID=bra-MIR156b-2;Name=bra-MIR156b-2"]
["A03","blat","exon",28108119,28108266,100,"+",".","Parent=bra-MIR156b-2"]
["A08","blat","gene",13494080,13494225,100,"-",".","ID=bra-MIR156b-3;Name=bra-MIR156b-3"]
["A08","blat","exon",13494080,13494225,100,"-",".","Parent=bra-MIR156b-3"]
["A01","blat","gene",2836919,2837007,100,"+",".","ID=bra-MIR156c-1;Name=bra-MIR156c-1"]
["A01","blat","exon",2836919,2837007,100,"+",".","Parent=bra-MIR156c-1"]
["A03","blat","gene",28483099,28483191,100,"-",".","ID=bra-MIR156c-2;Name=bra-MIR156c-2"]
["A03","blat","exon",28483099,28483191,100,"-",".","Parent=bra-MIR156c-2"]
["A08","blat","gene",13235358,13235451,100,"+",".","ID=bra-MIR156c-3;Name=bra-MIR156c-3"]
["A08","blat","exon",13235358,13235451,100,"+",".","Parent=bra-MIR156c-3"]
["A03","blat","gene",1903421,1903550,100,"-",".","ID=bra-MIR156d-1;Name=bra-MIR156d-1"]
["A03","blat","exon",1903421,1903550,100,"-",".","Parent=bra-MIR156d-1"]
["A10","blat","gene",14800755,14800868,100,"+",".","ID=bra-MIR156d-2;Name=bra-MIR156d-2"]
["A10","blat","exon",14800755,14800868,100,"+",".","Parent=bra-MIR156d-2"]
["A02","blat","gene",2981958,2982061,100,"+",".","ID=bra-MIR156e-1;Name=bra-MIR156e-1"]
["A02","blat","exon",2981958,2982061,100,"+",".","Parent=bra-MIR156e-1"]
["A03","blat","gene",2162969,2163091,100,"+",".","ID=bra-MIR156e-2;Name=bra-MIR156e-2"]
["A03","blat","exon",2162969,2163091,100,"+",".","Parent=bra-MIR156e-2"]
["A06","blat","gene",17869822,17869969,100,"+",".","ID=bra-MIR156f-1;Name=bra-MIR156f-1"]
["A06","blat","exon",17869822,17869969,100,"+",".","Parent=bra-MIR156f-1"]
["A06","blat","gene",17870455,17870558,100,"+",".","ID=bra-MIR156f-2;Name=bra-MIR156f-2"]
["A06","blat","exon",17870455,17870558,100,"+",".","Parent=bra-MIR156f-2"]
["A07","blat","gene",903369,903476,100,"+",".","ID=bra-MIR156g;Name=bra-MIR156g"]
["A07","blat","exon",903369,903476,100,"+",".","Parent=bra-MIR156g"]
["A10","blat","gene",7026217,7026319,100,"-",".","ID=bra-MIR156h-1;Name=bra-MIR156h-1"]
["A10","blat","exon",7026217,7026319,100,"-",".","Parent=bra-MIR156h-1"]
["A02","blat","gene",7395180,7395286,100,"+",".","ID=bra-MIR156h-2;Name=bra-MIR156h-2"]
["A02","blat","exon",7395180,7395286,100,"+",".","Parent=bra-MIR156h-2"]
["A02","blat","gene",9905884,9906012,100,"+",".","ID=bra-MIR157a;Name=bra-MIR157a"]
["A02","blat","exon",9905884,9906012,100,"+",".","Parent=bra-MIR157a"]
["A07","blat","gene",17329440,17329568,100,"+",".","ID=bra-MIR157b;Name=bra-MIR157b"]
["A07","blat","exon",17329440,17329568,100,"+",".","Parent=bra-MIR157b"]
["A01","blat","gene",22199621,22199806,100,"+",".","ID=bra-MIR157c-1;Name=bra-MIR157c-1"]
["A01","blat","exon",22199621,22199806,100,"+",".","Parent=bra-MIR157c-1"]
["A03","blat","gene",17929011,17929217,100,"-",".","ID=bra-MIR157c-2;Name=bra-MIR157c-2"]
["A03","blat","exon",17929011,17929217,100,"-",".","Parent=bra-MIR157c-2"]
["A05","blat","gene",21937335,21937433,100,"+",".","ID=bra-MIR158a-1;Name=bra-MIR158a-1"]
["A05","blat","exon",21937335,21937433,100,"+",".","Parent=bra-MIR158a-1"]
["A08","blat","gene",3270901,3271003,100,"+",".","ID=bra-MIR158a-2;Name=bra-MIR158a-2"]
["A08","blat","exon",3270901,3271003,100,"+",".","Parent=bra-MIR158a-2"]
["A02","blat","gene",13176339,13176525,100,"-",".","ID=bra-MIR159a-1;Name=bra-MIR159a-1"]
["A02","blat","exon",13176339,13176525,100,"-",".","Parent=bra-MIR159a-1"]
["A07","blat","gene",15265568,15265752,100,"+",".","ID=bra-MIR159a-2;Name=bra-MIR159a-2"]
["A07","blat","exon",15265568,15265752,100,"+",".","Parent=bra-MIR159a-2"]
["A07","blat","gene",19994212,19994416,100,"-",".","ID=bra-MIR159a-3;Name=bra-MIR159a-3"]
["A07","blat","exon",19994212,19994416,100,"-",".","Parent=bra-MIR159a-3"]
["A05","blat","gene",779964,780176,100,"-",".","ID=bra-MIR159c;Name=bra-MIR159c"]
["A05","blat","exon",779964,780176,100,"-",".","Parent=bra-MIR159c"]
["A03","blat","gene",9345679,9345804,100,"+",".","ID=bra-MIR160a-1;Name=bra-MIR160a-1"]
["A03","blat","exon",9345679,9345804,100,"+",".","Parent=bra-MIR160a-1"]
["A05","blat","gene",3222213,3222334,100,"-",".","ID=bra-MIR160a-2;Name=bra-MIR160a-2"]
["A05","blat","exon",3222213,3222334,100,"-",".","Parent=bra-MIR160a-2"]
["A01","blat","gene",4530444,4530530,100,"+",".","ID=bra-MIR160b-1;Name=bra-MIR160b-1"]
["A01","blat","exon",4530444,4530530,100,"+",".","Parent=bra-MIR160b-1"]
["A03","blat","gene",22987335,22987428,100,"+",".","ID=bra-MIR160b-2;Name=bra-MIR160b-2"]
["A03","blat","exon",22987335,22987428,100,"+",".","Parent=bra-MIR160b-2"]
["A08","blat","gene",10339615,10339702,100,"+",".","ID=bra-MIR160b-3;Name=bra-MIR160b-3"]
["A08","blat","exon",10339615,10339702,100,"+",".","Parent=bra-MIR160b-3"]
["A06","blat","gene",24559527,24559612,100,"+",".","ID=bra-MIR160c-1;Name=bra-MIR160c-1"]
["A06","blat","exon",24559527,24559612,100,"+",".","Parent=bra-MIR160c-1"]
["A09","blat","gene",16001252,16001394,100,"+",".","ID=bra-MIR160c-2;Name=bra-MIR160c-2"]
["A09","blat","exon",16001252,16001394,100,"+",".","Parent=bra-MIR160c-2"]
["A05","blat","gene",12394624,12394763,100,"-",".","ID=bra-MIR161;Name=bra-MIR161"]
["A05","blat","exon",12394624,12394763,100,"-",".","Parent=bra-MIR161"]
["A02","blat","gene",2629777,2629974,100,"-",".","ID=bra-MIR162a;Name=bra-MIR162a"]
["A02","blat","exon",2629777,2629974,100,"-",".","Parent=bra-MIR162a"]
["A03","blat","gene",21017601,21017713,100,"+",".","ID=bra-MIR162b;Name=bra-MIR162b"]
["A03","blat","exon",21017601,21017713,100,"+",".","Parent=bra-MIR162b"]
["A01","blat","gene",25346875,25346984,100,"-",".","ID=bra-MIR164a-1;Name=bra-MIR164a-1"]
["A01","blat","exon",25346875,25346984,100,"-",".","Parent=bra-MIR164a-1"]
["A05","blat","gene",150867,150976,100,"-",".","ID=bra-MIR164a-2;Name=bra-MIR164a-2"]
["A05","blat","exon",150867,150976,100,"-",".","Parent=bra-MIR164a-2"]
["A02","blat","gene",1457128,1457302,100,"-",".","ID=bra-MIR164b;Name=bra-MIR164b"]
["A02","blat","exon",1457128,1457302,100,"-",".","Parent=bra-MIR164b"]
["A02","blat","gene",24476908,24477024,100,"+",".","ID=bra-MIR164c-1;Name=bra-MIR164c-1"]
["A02","blat","exon",24476908,24477024,100,"+",".","Parent=bra-MIR164c-1"]
["A06","blat","gene",18231464,18231588,100,"-",".","ID=bra-MIR164c-2;Name=bra-MIR164c-2"]
["A06","blat","exon",18231464,18231588,100,"-",".","Parent=bra-MIR164c-2"]
["A09","blat","gene",2022891,2023011,100,"-",".","ID=bra-MIR164c-3;Name=bra-MIR164c-3"]
["A09","blat","exon",2022891,2023011,100,"-",".","Parent=bra-MIR164c-3"]
["A10","blat","gene",4522460,4522607,100,"-",".","ID=bra-MIR165a;Name=bra-MIR165a"]
["A10","blat","exon",4522460,4522607,100,"-",".","Parent=bra-MIR165a"]
["A09","blat","gene",688994,689167,100,"-",".","ID=bra-MIR165b;Name=bra-MIR165b"]
["A09","blat","exon",688994,689167,100,"-",".","Parent=bra-MIR165b"]
["A04","blat","gene",18837663,18837844,100,"+",".","ID=bra-MIR166a-1;Name=bra-MIR166a-1"]
["A04","blat","exon",18837663,18837844,100,"+",".","Parent=bra-MIR166a-1"]
["A05","blat","gene",567044,567200,100,"-",".","ID=bra-MIR166a-2;Name=bra-MIR166a-2"]
["A05","blat","exon",567044,567200,100,"-",".","Parent=bra-MIR166a-2"]
["A09","blat","gene",30223899,30224070,100,"+",".","ID=bra-MIR166b;Name=bra-MIR166b"]
["A09","blat","exon",30223899,30224070,100,"+",".","Parent=bra-MIR166b"]
["A09","blat","gene",36896582,36896622,100,"-",".","ID=bra-MIR166c;Name=bra-MIR166c"]
["A09","blat","exon",36896582,36896622,100,"-",".","Parent=bra-MIR166c"]
["A04","blat","gene",8640512,8640662,100,"-",".","ID=bra-MIR166e-1;Name=bra-MIR166e-1"]
["A04","blat","exon",8640512,8640662,100,"-",".","Parent=bra-MIR166e-1"]
["A02","blat","gene",819653,819810,100,"-",".","ID=bra-MIR166e-2;Name=bra-MIR166e-2"]
["A02","blat","exon",819653,819810,100,"-",".","Parent=bra-MIR166e-2"]
["A01","blat","gene",19982440,19982587,100,"-",".","ID=bra-MIR167a-1;Name=bra-MIR167a-1"]
["A01","blat","exon",19982440,19982587,100,"-",".","Parent=bra-MIR167a-1"]
["A03","blat","gene",19158179,19158330,100,"+",".","ID=bra-MIR167a-2;Name=bra-MIR167a-2"]
["A03","blat","exon",19158179,19158330,100,"+",".","Parent=bra-MIR167a-2"]
["A05","blat","gene",15076956,15077094,100,"-",".","ID=bra-MIR167a-3;Name=bra-MIR167a-3"]
["A05","blat","exon",15076956,15077094,100,"-",".","Parent=bra-MIR167a-3"]
["A09","blat","gene",13760332,13760464,100,"+",".","ID=bra-MIR167a-4;Name=bra-MIR167a-4"]
["A09","blat","exon",13760332,13760464,100,"+",".","Parent=bra-MIR167a-4"]
["A09","blat","gene",21095658,21095950,100,"-",".","ID=bra-MIR167d;Name=bra-MIR167d"]
["A09","blat","exon",21095658,21095950,100,"-",".","Parent=bra-MIR167d"]
["A01","blat","gene",5386102,5386238,100,"+",".","ID=bra-MIR168a-1;Name=bra-MIR168a-1"]
["A01","blat","exon",5386102,5386238,100,"+",".","Parent=bra-MIR168a-1"]
["A03","blat","gene",23663742,23663869,100,"+",".","ID=bra-MIR168a-2;Name=bra-MIR168a-2"]
["A03","blat","exon",23663742,23663869,100,"+",".","Parent=bra-MIR168a-2"]
["A08","blat","gene",10924548,10924687,100,"+",".","ID=bra-MIR168a-3;Name=bra-MIR168a-3"]
["A08","blat","exon",10924548,10924687,100,"+",".","Parent=bra-MIR168a-3"]
["A06","blat","gene",25071486,25071636,100,"+",".","ID=bra-MIR168b-1;Name=bra-MIR168b-1"]
["A06","blat","exon",25071486,25071636,100,"+",".","Parent=bra-MIR168b-1"]
["A09","blat","gene",12975265,12975427,100,"+",".","ID=bra-MIR168b-2;Name=bra-MIR168b-2"]
["A09","blat","exon",12975265,12975427,100,"+",".","Parent=bra-MIR168b-2"]
["A03","blat","gene",16715841,16715993,100,"-",".","ID=bra-MIR169a-1;Name=bra-MIR169a-1"]
["A03","blat","exon",16715841,16715993,100,"-",".","Parent=bra-MIR169a-1"]
["A05","blat","gene",20923668,20923808,100,"+",".","ID=bra-MIR169a-2;Name=bra-MIR169a-2"]
["A05","blat","exon",20923668,20923808,100,"+",".","Parent=bra-MIR169a-2"]
["A03","blat","gene",16715969,16716009,100,"-",".","ID=bra-MIR169a-3;Name=bra-MIR169a-3"]
["A03","blat","exon",16715969,16716009,100,"-",".","Parent=bra-MIR169a-3"]
["A02","blat","gene",25162412,25162603,100,"-",".","ID=bra-MIR169b-1;Name=bra-MIR169b-1"]
["A02","blat","exon",25162412,25162603,100,"-",".","Parent=bra-MIR169b-1"]
["A06","blat","gene",17327864,17328052,100,"+",".","ID=bra-MIR169b-2;Name=bra-MIR169b-2"]
["A06","blat","exon",17327864,17328052,100,"+",".","Parent=bra-MIR169b-2"]
["A09","blat","gene",1578256,1578449,100,"+",".","ID=bra-MIR169b-3;Name=bra-MIR169b-3"]
["A09","blat","exon",1578256,1578449,100,"+",".","Parent=bra-MIR169b-3"]
["A06","blat","gene",7567521,7567691,100,"-",".","ID=bra-MIR169h-1;Name=bra-MIR169h-1"]
["A06","blat","exon",7567521,7567691,100,"-",".","Parent=bra-MIR169h-1"]
["A08","blat","gene",18796875,18797050,100,"+",".","ID=bra-MIR169h-2;Name=bra-MIR169h-2"]
["A08","blat","exon",18796875,18797050,100,"+",".","Parent=bra-MIR169h-2"]
["A09","blat","gene",32589553,32589734,100,"+",".","ID=bra-MIR169h-3;Name=bra-MIR169h-3"]
["A09","blat","exon",32589553,32589734,100,"+",".","Parent=bra-MIR169h-3"]
["A06","blat","gene",4386169,4386458,100,"-",".","ID=bra-MIR169n;Name=bra-MIR169n"]
["A06","blat","exon",4386169,4386458,100,"-",".","Parent=bra-MIR169n"]
["A01","blat","gene",26736006,26736236,100,"+",".","ID=bra-MIR169i-1;Name=bra-MIR169i-1"]
["A01","blat","exon",26736006,26736236,100,"+",".","Parent=bra-MIR169i-1"]
["A02","blat","gene",22304894,22305103,100,"+",".","ID=bra-MIR169i-2;Name=bra-MIR169i-2"]
["A02","blat","exon",22304894,22305103,100,"+",".","Parent=bra-MIR169i-2"]
["A06","blat","gene",22657872,22658098,100,"+",".","ID=bra-MIR169i-3;Name=bra-MIR169i-3"]
["A06","blat","exon",22657872,22658098,100,"+",".","Parent=bra-MIR169i-3"]
["A01","blat","gene",26735023,26735259,100,"+",".","ID=bra-MIR169j-1;Name=bra-MIR169j-1"]
["A01","blat","exon",26735023,26735259,100,"+",".","Parent=bra-MIR169j-1"]
["A02","blat","gene",22304516,22304750,100,"+",".","ID=bra-MIR169j-2;Name=bra-MIR169j-2"]
["A02","blat","exon",22304516,22304750,100,"+",".","Parent=bra-MIR169j-2"]
["A06","blat","gene",22657495,22657763,100,"+",".","ID=bra-MIR169j-3;Name=bra-MIR169j-3"]
["A06","blat","exon",22657495,22657763,100,"+",".","Parent=bra-MIR169j-3"]
["A01","blat","gene",12689802,12689913,100,"-",".","ID=bra-MIR171a-1;Name=bra-MIR171a-1"]
["A01","blat","exon",12689802,12689913,100,"-",".","Parent=bra-MIR171a-1"]
["A03","blat","gene",21906681,21906834,100,"+",".","ID=bra-MIR171a-2;Name=bra-MIR171a-2"]
["A03","blat","exon",21906681,21906834,100,"+",".","Parent=bra-MIR171a-2"]
["A09","blat","gene",25648409,25648524,100,"+",".","ID=bra-MIR171a-3;Name=bra-MIR171a-3"]
["A09","blat","exon",25648409,25648524,100,"+",".","Parent=bra-MIR171a-3"]
["A01","blat","gene",22629806,22629886,100,"-",".","ID=bra-MIR171c-1;Name=bra-MIR171c-1"]
["A01","blat","exon",22629806,22629886,100,"-",".","Parent=bra-MIR171c-1"]
["A06","blat","gene",9746665,9746760,100,"-",".","ID=bra-MIR171c-2;Name=bra-MIR171c-2"]
["A06","blat","exon",9746665,9746760,100,"-",".","Parent=bra-MIR171c-2"]
["A03","blat","gene",11440423,11440571,100,"+",".","ID=bra-MIR172a-1;Name=bra-MIR172a-1"]
["A03","blat","exon",11440423,11440571,100,"+",".","Parent=bra-MIR172a-1"]
["A07","blat","gene",10771590,10771723,100,"-",".","ID=bra-MIR172a-2;Name=bra-MIR172a-2"]
["A07","blat","exon",10771590,10771723,100,"-",".","Parent=bra-MIR172a-2"]
["A02","blat","gene",2012429,2012553,100,"-",".","ID=bra-MIR172b-1;Name=bra-MIR172b-1"]
["A02","blat","exon",2012429,2012553,100,"-",".","Parent=bra-MIR172b-1"]
["A03","blat","gene",693068,693200,100,"-",".","ID=bra-MIR172b-2;Name=bra-MIR172b-2"]
["A03","blat","exon",693068,693200,100,"-",".","Parent=bra-MIR172b-2"]
["A10","blat","gene",16831514,16831648,100,"+",".","ID=bra-MIR172b-3;Name=bra-MIR172b-3"]
["A10","blat","exon",16831514,16831648,100,"+",".","Parent=bra-MIR172b-3"]
["A10","blat","gene",11965656,11965816,100,"+",".","ID=bra-MIR172c;Name=bra-MIR172c"]
["A10","blat","exon",11965656,11965816,100,"+",".","Parent=bra-MIR172c"]
["A04","blat","gene",2690051,2690172,100,"-",".","ID=bra-MIR172d-1;Name=bra-MIR172d-1"]
["A04","blat","exon",2690051,2690172,100,"-",".","Parent=bra-MIR172d-1"]
["A09","blat","gene",27712078,27712215,100,"+",".","ID=bra-MIR172d-2;Name=bra-MIR172d-2"]
["A09","blat","exon",27712078,27712215,100,"+",".","Parent=bra-MIR172d-2"]
["A02","blat","gene",6174064,6174207,100,"-",".","ID=bra-MIR172e-1;Name=bra-MIR172e-1"]
["A02","blat","exon",6174064,6174207,100,"-",".","Parent=bra-MIR172e-1"]
["A03","blat","gene",4762893,4763004,100,"-",".","ID=bra-MIR172e-2;Name=bra-MIR172e-2"]
["A03","blat","exon",4762893,4763004,100,"-",".","Parent=bra-MIR172e-2"]
["A10","blat","gene",8871459,8871577,100,"+",".","ID=bra-MIR172e-3;Name=bra-MIR172e-3"]
["A10","blat","exon",8871459,8871577,100,"+",".","Parent=bra-MIR172e-3"]
["A01","blat","gene",7426332,7426516,100,"+",".","ID=bra-MIR319a-1;Name=bra-MIR319a-1"]
["A01","blat","exon",7426332,7426516,100,"+",".","Parent=bra-MIR319a-1"]
["A03","blat","gene",25298180,25298423,100,"+",".","ID=bra-MIR319a-2;Name=bra-MIR319a-2"]
["A03","blat","exon",25298180,25298423,100,"+",".","Parent=bra-MIR319a-2"]
["A08","blat","gene",9567061,9567259,100,"-",".","ID=bra-MIR319a-3;Name=bra-MIR319a-3"]
["A08","blat","exon",9567061,9567259,100,"-",".","Parent=bra-MIR319a-3"]
["A04","blat","gene",8457994,8458222,100,"-",".","ID=bra-MIR319b;Name=bra-MIR319b"]
["A04","blat","exon",8457994,8458222,100,"-",".","Parent=bra-MIR319b"]
["A03","blat","gene",9868405,9868589,100,"+",".","ID=bra-MIR319c-1;Name=bra-MIR319c-1"]
["A03","blat","exon",9868405,9868589,100,"+",".","Parent=bra-MIR319c-1"]
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