workingDirectory="results"

# inicialization
rm -rf $workingDirectory
mkdir $workingDirectory
cd $workingDirectory

region=(peakGenes_Promoters peakGenes_Exons peakGenes_Terminators)
for r in ${region[*]}
do
  mkdir $r
  cd    $r
  cp ../../averageDistribution .
  cp ../../$r".txt" .
  ./averageDistribution $r".txt" ../../../../data/tomatoGenome/ITAG_pre2.3_gene_models.gff3 ../../../../data/tomatoGenome/A8_400.sam 3000 1000 100
  cd ..
done

cd ..
