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["Supplementary Table 1: Amino acid residues coded by codons undergoing RNA editing in proteins with known 3D structure"]
["RNA polymease a","2a69 (A)"]
[null,"ligand-binding site","2nd","interface","ACS","core","PDB aa","PDB aa #","edit aa","codon","edit nt","species"]
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[null,null,"E","x",0.108,null,"I",165,"S->F",2,"c->t","c: Takakia lepidozioides"]
[{"$nulls":4},0.013,"x","V",167,"A->V",2,"c->t","c: Takakia lepidozioides"]
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[null,null,"H","x",0.473,null,"L",222,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
["RNA polymease a","1coo(_)"]
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["RNA polymerase b","2a69 (C)"]
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[null,null,"H",null,0.313,null,"I",236,"A->V",2,"c->t","c: Adiantum capillus-veneris"]
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[null,null,"H",null,{"v":0.03,"d":"0.030"},null,"L",310,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
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[null,null,"H","x",0.049,"x","M",564,"T->M",2,"c->t","c: Adiantum capillus-veneris"]
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[null,null,"H","x",0.502,null,"L",773,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.185,null,"V",804,"T->I",2,"c->t","c: Adiantum capillus-veneris"]
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[{"$nulls":3},"x",0.293,null,"D",1103,"P->S",1,"c->t","c: Adiantum capillus-veneris"]
["RNA polymerase b'","2a69 (D)"]
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[{"$nulls":3},"x",0.747,null,"L",326,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":3},"x",0.634,null,"D",418,"Y->H",1,"t->c","c: Adiantum capillus-veneris"]
[{"$nulls":3},"x",0.533,null,"K",551,"*->R",1,"t->c","c: Adiantum capillus-veneris"]
[null,null,"G","x",0.095,null,"C",620,"R->C",1,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":4},0.013,"x","F",623,"S->F",2,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":3},"x",0.358,null,"F",627,"L->F",1,"c->t","c: Adiantum capillus-veneris"]
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[null,null,"H",null,0.018,"x","F",769,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,"(Zn)",null,null,{"v":0,"d":"0.000"},"x","C",1088,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H","x",0.063,null,"R",1260,"C->R",1,"t->c","c: Adiantum capillus-veneris"]
["ribosomal protein S2","2j00 (B)"]
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[null,null,"H","x",0.473,null,"K",141,"A->V",2,"c->t","m: Oryza sativa"]
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[null,null,"G",null,0.044," ","E",164,"*->Q",1,"t->c","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.239,null,"A",165,"P->S",1,"c->t","m: Hordeum vulgare subsp. vulgare","m: Oryza sativa","m: Triticum aestivum"]
[null,null,"H",null,{"v":0,"d":"0.000"},"x","A",171,"R->C",1,"c->t","m: Hordeum vulgare subsp. vulgare","m: Oryza sativa","m: Triticum aestivum"]
[null,null,"H","x",0.678,null,"K",173,"S->L",2,"c->t","m: Hordeum vulgare subsp. vulgare","m: Oryza sativa","m: Triticum aestivum"]
[null,null,"H","x",0.284,null,"L",174,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
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[{"$nulls":4},"-",null,"-","-","S->L",2,"c->t","m: Hordeum vulgare subsp. vulgare"]
["ribosomal protein S3","2j00 (C)"]
[null,"ligand-binding site","2nd","interface","ACS","core","PDB aa","PDB aa #","edit aa","codon","edit nt","species"]
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[null,null,"E",null,0.001,"x","V",152,"R->C",1,"c->t","m: Cycas revoluta"]
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[null,null,"G",null,0.088,null,"I",156,"S->L",2,"c->t","m: Cycas revoluta","m: Oenothera berteroana"]
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[null,null,"E","x",{"v":0.15,"d":"0.150"},null,"Y",183,"H->Y",1,"c->t","m: Cycas revoluta"]
[null,null,"E","x",{"v":0.45,"d":"0.450"},null,"F",185,"P->S",1,"c->t","m: Brassica napus","m: Oenothera berteroana"]
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[null,null,"E",null,0.002,"x","A",199,"T->I",2,"c->t","c: Adiantum capillus-veneris"]
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[null,null,"H","x",0.179,null,"L",57,"S->L",2,"c->t","m: Oryza sativa"]
[null,null,"H","x",0.181,null,"R",64,"P->S",1,"c->t","m: Brassica napus"]
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[null,null,"H",null,0.022,"x","Y",67,"H->Y",1,"c->t","m: Brassica napus","m: Arabidopsis thaliana"]
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["ribosomal protein S8","2j00 (H)"]
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[null,null,"E",null,{"v":0,"d":"0.000"},null,"C",135,"R->C",1,"c->t","c: Adiantum capillus-veneris"]
["ribosomal protein S10","2j00 (J)"]
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["ribosomal protein S12","2j00 (L)"]
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[{"$nulls":3},"x",0.197," ","L",95,"S->L",2,"c->t","m: Helianthus annuus","m: Zea mays","m: Oryza sativa"]
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["ribosomal protein L20","2j01(U)"]
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["ribosomal protein L21","2j01(V)"]
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["ribosomal protein L22","2j01(W)"]
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[null,null,"H",null,0.039,"x","L",36,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
["ribosomal protein L23","2j01(X)"]
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["ribosomal protein L33","2j01(6)"]
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["translation initiation factor 1","1hr0(W)"]
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["Clp protease proteolytic subunit 1","1yg6(A)"]
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["cytochrome bc1 complex cytochrome b","1kyo(C)"]
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[null,null,"H",null,0.001,"x","L",250,"P->L",2,"c->t","m: Olea europaea subsp. europaea"]
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[null,null,"E","x",0.423,null,"Y",105,"H->Y",1,"c->t","c: Adiantum capillus-veneris"]
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[null,null,"H","x",0.577,null,"I",124,"P->L",2,"c->t","c: Takakia lepidozioides"]
[null,null,"H",null,0.358,null,"W",125,"R->W",1,"c->t","c: Takakia lepidozioides"]
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[{"$nulls":4},"-",null,"-","-","R->*",1,"c->t","c: Takakia lepidozioides"]
[{"$nulls":4},"-",null,"-","-","Q->*",1,"c->t","c: Adiantum capillus-veneris"]
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[{"$nulls":4},0.641,null,"K",57,"W->R",1,"t->c","c: Adiantum capillus-veneris"]
[null,"heme","E",null,0.022,null,"Q",60,"*->Q",1,"t->c","c: Adiantum capillus-veneris"]
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[null,"chlorophyll A","H","x",0.056,null,"W",74,"R->W",1,"c->t","c: Adiantum capillus-veneris"]
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[{"$nulls":4},"-",null,"-","-","L->L",3,"c->t","m: Oryza sativa","m: Secale cereale"]
[{"$nulls":4},"-",null,"-","-","I->I",3,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":3},"x",0.001,"x","L",21,"S->L",2,"c->t","m: Angiopteris evecta"]
[{"$nulls":3},"x",0.657,null,"Q",25,"*->Q",1,"t->c","m: Isoetes flaccida","m: Botrychium lunaria"]
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[{"$nulls":4},0.001,"x","Q",163,"*->Q",1,"t->c","m: Blechnum occidentale","m: Pteridium aquilinum","m: Dicksonia antarctica","m: Cyathea poeppigii","m: Hymenophyllum hirsutum","m: Osmunda regalis","m: Marsilea mutica","m: Isoetes flaccida"]
[{"$nulls":4},"-",null,"-","-","*->Q",1,"t->c","m: Blechnum occidentale","m: Pteridium aquilinum","m: Dicksonia antarctica","m: Cyathea poeppigii","m: Marsilea mutica"]
[null,"Mg",null,"x",{"v":0.06,"d":"0.060"},null,"Q",185,"*->Q",1,"t->c","m: Blechnum occidentale","m: Pteridium aquilinum","m: Dicksonia antarctica","m: Cyathea poeppigii","m: Hymenophyllum hirsutum","m: Osmunda regalis","m: Marsilea mutica","m: Isoetes flaccida"]
[null,null,"H","x",0.678,null,"Q",192,"*->Q",1,"t->c","m: Blechnum occidentale","m: Pteridium aquilinum","m: Dicksonia antarctica","m: Cyathea poeppigii","m: Hymenophyllum hirsutum","m: Osmunda regalis","m: Marsilea mutica","m: Isoetes flaccida"]
[null,null,"H","x",0.526,null,"Y",277,"H->Y",1,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.037,"x","Q",326,"*->Q",1,"t->c","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.001,"x","I",327,"T->I",2,"c->t","c: Adiantum capillus-veneris"]
[null,"ATP",null,null,{"v":0.05,"d":"0.050"},null,"P",340,"P->S",1,"c->t","m: Nicotiana tabacum"]
[{"$nulls":4},0.177,null,"V",344,"V->V",3,"c->t","m: Arabidopsis thaliana"]
[null,null,"H",null,{"v":0,"d":"0.000"},"x","M",367,"P->L",2,"c->t","m: Nicotiana tabacum","m: Brassica napus","m: Arabidopsis thaliana","m: Beta vulgaris"]
[null,null,"H",null,{"v":0,"d":"0.000"},"x","M",367,"S->L",2,"c->t","m: Oryza sativa"]
[null,null,"H",null,0.102,null,"Y",374,"S->F",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"G","x",0.394,null,"F",380,"L->F",1,"c->t","m: Nicotiana tabacum"]
[{"$nulls":4},0.051,null,"L",405,"P->L",2,"c->t","m: Nicotiana tabacum","m: Brassica napus","m: Arabidopsis thaliana","m: Beta vulgaris"]
[{"$nulls":4},0.051,null,"L",405,"P->S",1,"c->t","m: Oryza sativa"]
[null,null,"H",null,0.133,null,"L",446,"P->L",2,"c->t","m: Nicotiana tabacum","m: Brassica napus","m: Arabidopsis thaliana","m: Beta vulgaris"]
[null,null,"H",null,0.018,"x","S",470,"P->L",2,"c->t","m: Nicotiana tabacum","m: Brassica napus","m: Arabidopsis thaliana","m: Oryza sativa"]
[null,null,"H",null,{"v":0.34,"d":"0.340"},null,"K",473,"S->F",2,"c->t","m: Oryza sativa"]
["F1 ATPase b","2ck3(D)"]
[null,"ligand-binding site","2nd","interface","ACS","core","PDB aa","PDB aa #","edit aa","codon","edit nt","species"]
[{"$nulls":4},"-",null,"-","-","P->L",2,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":4},0.036,"x","M",55,"T->M",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.133,null,"M",159,"T->M",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.009,"x","L",161,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,{"v":0.03,"d":"0.030"},null,"M",192,"T->M",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.052,null,"L",226,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":4},0.621,null,"A",438,"P->S",1,"c->t","c: Adiantum capillus-veneris"]
["F1 ATPase e","1fs0(E)"]
[null,"ligand-binding site","2nd","interface","ACS","core","PDB aa","PDB aa #","edit aa","codon","edit nt","species"]
[null,null,"E",null,0.061,null,"Y",4,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.188,null,"E",21,"W->R",1,"t->c","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.016,"x","L",64,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
["RUBISCO large subunit ","1uw9(A)"]
[null,"ligand-binding site","2nd","interface","ACS","core","PDB aa","PDB aa #","edit aa","codon","edit nt","species"]
[null,null,"H",null,{"v":0,"d":"0.000"},"x","Y",14,"H->Y",1,"c->t","c: Osmunda cinnamomea var. fokiensis","c: Lycopodium digitatum","c: Anthoceros formosae"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","F",30,"S->F",2,"c->t","c: Anthoceros formosae"]
[null,null,"E",null,0.017,"x","R",31,"*->R",1,"t->c","c: Anthoceros formosae"]
[{"$nulls":3},"x",0.272,null,"Q",35,"*->Q",1,"t->c","c: Anthoceros formosae"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","V",91,"A->V",2,"c->t","c: Anthoceros formosae"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","Y",93,"H->Y",1,"c->t","c: Bazzania trilobata"]
[{"$nulls":3},"x",{"v":0.1,"d":"0.100"},null,"P",94,"S->P",1,"t->c","c: Anthoceros formosae"]
[null,null,"G","x",0.264,null,"I",95,"S->L",2,"c->t","c: Sphagnum palustre"]
[null,null,"E","x",0.055,null,"L",120,"S->L",2,"c->t","c: Bazzania trilobata"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","L",123,"S->L",2,"c->t","c: Anthoceros formosae"]
[null,null,"E",null,0.001,"x","L",125,"S->L",2,"c->t","c: Osmunda cinnamomea var. fokiensis"]
[null,null,"E",null,0.001,"x","L",128,"S->L",2,"c->t","c: Osmunda cinnamomea var. fokiensis","c: Anthoceros formosae"]
[null,null,"H","x",0.017,"x","L",152,"S->L",2,"c->t","c: Anthoceros formosae"]
[null,null,"H","x",{"v":0.4,"d":"0.400"},null,"Y",216,"S->F",2,"c->t","c: Anthoceros formosae"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","L",230,"S->L",2,"c->t","c: Osmunda cinnamomea var. fokiensis"]
[null,null,"H","x",0.218,null,"L",250,"S->L",2,"c->t","c: Osmunda cinnamomea var. fokiensis"]
[null,null,"H","x",0.003,"x","L",260,"S->L",2,"c->t","c: Osmunda cinnamomea var. fokiensis"]
[null,null,"H","x",0.631,null,"T",265,"I->T",2,"t->c","c: Anthoceros formosae"]
[null,null,"H",null,0.162,null,"Y",273,"H->Y",1,"c->t","c: Bazzania trilobata"]
[{"$nulls":3},"x",{"v":0.02,"d":"0.020"},null,"L",279,"P->L",2,"c->t","c: Lycopodium digitatum"]
[null,null,"H","x",0.175,null,"I",291,"T->I",2,"c->t","c: Anthoceros formosae"]
[null,null,"H","x",0.175,null,"I",291,"T->I",3,"c->t","c: Anthoceros formosae"]
[null,null,"H","x",0.002,"x","L",304,"S->L",2,"c->t","c: Anthoceros formosae","c: Bazzania trilobata"]
[null,null,"H",null,{"v":0,"d":"0.000"},"x","L",308,"S->L",2,"c->t","c: Anthoceros formosae"]
[{"$nulls":4},0.001,"x","S",318,"P->S",1,"c->t","c: Anthoceros formosae"]
[null,null,"H",null,0.375,null,"R",329,"C->R",1,"t->c","c: Anthoceros formosae"]
[null,null,"H",null,0.002,"x","M",339,"P->L",2,"c->t","c: Anthoceros formosae"]
[null,null,"H",null,0.233,null,"R",340,"C->R",1,"t->c","c: Anthoceros formosae"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","M",365,"S->L",2,"c->t","c: Lycopodium digitatum"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","P",366,"L->P",2,"t->c","c: Anthoceros formosae"]
[null,null,"E",null,0.006,"x","L",390,"S->L",2,"c->t","c: Lycopodium digitatum"]
["Acetyl-coA carboxylase carboxyl transferase b","2f9i(B)"]
[null,"ligand-binding site","2nd","interface","ACS","core","PDB aa","PDB aa #","edit aa","codon","edit nt","species"]
[{"$nulls":4},"-",null,"-","-","T->M",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.487,null,"Y",16,"H->Y",1,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.025,null,"L",20,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,"Zn",null,null,0.395,null,"C",30,"R->C",1,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,{"v":0.13,"d":"0.130"},null,"A",44,"L->L",3,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":4},{"v":0,"d":"0.000"},"x","I",45,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.001,null,"Y",69,"H->Y",1,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","L",93,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","V",100,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","F",134,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,{"v":0,"d":"0.000"},"x","S",138,"R->C",1,"c->t","c: Adiantum capillus-veneris"]
[null,null,"G","x",0.589,null,"M",145,"T->M",2,"c->t","c: Adiantum capillus-veneris"]
[null,null,"E",null,0.011,"x","L",176,"P->L",2,"c->t","c: Adiantum capillus-veneris"]
[{"$nulls":4},0.161,null,"P",199,"S->P",1,"t->c","c: Adiantum capillus-veneris"]
[null,null,"H",null,0.715,null,"Q",213,"*->Q",1,"t->c","c: Adiantum capillus-veneris"]
[null,null,"E","x",0.571,null,"K",237,"S->L",2,"c->t","c: Adiantum capillus-veneris"]
[]
["Note"]
["ligand-binding site","The residue is a lignad -binding site if the accessibility with and without a ligand is non-vanishing."]
["2nd","Secondary structure of the residue determined by DSSP"]
["interface","The residue is a subunit interface, if the accessibility with and without the other subunit is non-vanishing."]
["ACS","Accessibility of the residue without ligands and other subunits"]
["core","Residue in a protein structural core"]
["PDB aa","The type of amino acid residue in PDB, - is a gap in the alignment"]
["PDB aa #","The number of amino acid residue in PDB"]
["edit aa","Pattern of amino acid residue conversion by RNA editing, * is a termination codon"]
["codon","The number of edited nucleotide in a codon "]
["edit nt","A pattern of RNA editing"]
["species","A species with the RNA editing. m: mitochondrion, c: chloroplast"]

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