{"text_format":"3","workbook":"xls","n_sheets":2,"sheets":["ANNOTATION","DEGs in aberrant regions + RMA "],"not_rendered":{"external_links":1,"defined_names":2},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"ANNOTATION","index":0,"n_rows":72,"n_cols":14,"rows_kept":72,"flags":["formulas_cached_only"]}
["Entrez Gene ID","Gene Symbol","Gene Name","Chromosome","Cytoband","Type","FC","FC1","Start Position","End Position","Concordance type","GO Cellular Component level 3","Biocarta","KEGG Pathway"]
[1007,"CDH9","cadherin 9, type 2 (T1-cadherin)",5,"5p14","CN gain",0.44,{"v":-2.272727272727273,"d":"-2.27"},26916465,27074431,null,"N/A","N/A","N/A"]
[11082,"ESM1","endothelial cell-specific molecule 1",5,"5q11.2","CN gain",9.65,9.65,54309899,54317161,"Concordant UP","N/A","N/A","N/A"]
[3003,"GZMK","granzyme K (granzyme 3; tryptase II)",5,"5q11-q12","CN gain",12.46,12.46,54355863,54365717,"Concordant UP","cytoplasm, ","N/A","N/A"]
[3001,"GZMA","granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)",5,"5q11-q12","CN gain",10.81,10.81,54434229,54441815,"Concordant UP","intracellular membrane-bound organelle, intracellular organelle, nucleus, plasma membrane, ","h_setPathway:Granzyme A mediated Apoptosis Pathway, ","HSA04080:NEUROACTIVE LIGAND-RECEPTOR INTERACTION, "]
[140890,"SFRS12","splicing factor, arginine/serine-rich 12",5,"5q12.3","CN gain",1.63,1.63,65475918,65510758,"Concordant UP","intracellular membrane-bound organelle, intracellular organelle, nucleus, ribonucleoprotein complex, spliceosome complex, ","N/A","N/A"]
[5921,"RASA1","RAS p21 protein activator (GTPase activating protein) 1",5,"5q13.3","CN gain",1.41,1.41,86599460,86723487,"Concordant UP","cytoplasm, ","h_HivnefPathway:HIV-I Nef:negative effector of Fas and TNF, h_TPOPathway:TPO Signaling Pathway, h_egfPathway:EGF Signaling Pathway, h_igf1Pathway:IGF-1 Signaling Pathway, h_insulinPathway:Insulin Signaling Pathway, h_metPathway:Signaling of Hepatocyte Gro","HSA04010:MAPK SIGNALING PATHWAY, HSA04360:AXON GUIDANCE, HSA05040:HUNTINGTON'S DISEASE, "]
[84059,"GPR98","G protein-coupled receptor 98",5,"5q13","CN gain",0.77,{"v":-1.2987012987012987,"d":"-1.30"},89890372,90495788,null,"intrinsic to membrane, ","N/A","N/A"]
[57561,"ARRDC3","arrestin domain containing 3",5,"5q14.3","CN gain",2.76,2.76,90700297,90714877,"Concordant UP","N/A","N/A","N/A"]
[831,"CAST","calpastatin",5,"5q15","CN gain",1.89,1.89,96023532,96134693,"Concordant UP","N/A","N/A","HSA04210:APOPTOSIS, HSA04510:FOCAL ADHESION, "]
[55781,"RIOK2","RIO kinase 2 (yeast)",5,"5q15","CN gain",1.85,1.85,96524394,96544689,"Concordant UP","N/A","N/A","N/A"]
[7903,"ST8SIA4","ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4",5,"5q21","CN gain",3.7,{"v":3.7,"d":"3.70"},100170802,100266869,"Concordant UP","cytoplasm, endomembrane system, intracellular membrane-bound organelle, intracellular organelle, intrinsic to membrane, organelle membrane, ","h_aMANpathway:Steps in the Glycosylation of Mammalian N-linked Oligosaccarides, ","N/A"]
[501,"ALDH7A1","aldehyde dehydrogenase 7 family, member A1",5,"5q31","CN gain",0.48,{"v":-2.0833333333333335,"d":"-2.08"},125908347,125958839,null,"N/A","N/A","HSA00010:GLYCOLYSIS / GLUCONEOGENESIS, HSA00053:ASCORBATE AND ALDARATE METABOLISM, HSA00071:FATTY ACID METABOLISM, HSA00120:BILE ACID BIOSYNTHESIS, HSA00280:VALINE, LEUCINE AND ISOLEUCINE DEGRADATION, HSA00310:LYSINE DEGRADATION, HSA00330:ARGININE AND PRO"]
[115123,"MARCH3","membrane-associated ring finger (C3HC4) 3",5,"5q23.2","CN gain",3.86,3.86,126233453,126394145,"Concordant UP","intrinsic to membrane, ","N/A","N/A"]
[133619,"PRRC1","proline-rich coiled-coil 1",5,"5q23.2","CN gain",1.49,1.49,126881246,126917515,"Concordant UP","N/A","N/A","N/A"]
[337876,"CHSY-2","chondroitin synthase-2",5,"5q23.3","CN gain",3.06,3.06,129268421,129550225,"Concordant UP","cytoplasm, intracellular membrane-bound organelle, intracellular organelle, intrinsic to membrane, ","N/A","HSA00532:CHONDROITIN SULFATE BIOSYNTHESIS, "]
[9678,"PHF14","PHD finger protein 14",7,"7p21.3","CN gain",1.59,1.59,10980040,11109807,"Concordant UP","N/A","N/A","N/A"]
[85477,"SCIN","scinderin",7,"7p21.3","CN gain",0.41,{"v":-2.4390243902439024,"d":"-2.44"},12576727,12659254,null,"cytoplasm, cytoskeleton, intracellular non-membrane-bound organelle, intracellular organelle, ","N/A","N/A"]
[54556,"ING3","inhibitor of growth family, member 3",7,"7q31","CN gain",1.72,1.72,120378052,120384270,"Concordant UP","intracellular membrane-bound organelle, intracellular organelle, nucleus, ","N/A","N/A"]
[10157,"AASS","aminoadipate-semialdehyde synthase",7,"7q31.3","CN gain",0.45,{"v":-2.2222222222222223,"d":"-2.22"},121503422,121561112,null,"cytoplasm, intracellular membrane-bound organelle, intracellular organelle, ","N/A","HSA00300:LYSINE BIOSYNTHESIS, HSA00310:LYSINE DEGRADATION, "]
[93664,"CADPS2","Ca2+-dependent activator protein for secretion 2",7,"7q31.3","CN gain",0.6,{"v":-1.6666666666666667,"d":"-1.67"},121746688,122313750,null,"N/A","N/A","N/A"]
[4745,"NELL1","NEL-like 1 (chicken)",11,"11p15.2-p15.1","CN gain",0.1,{"v":-10,"d":"-10.00"},20647692,21553803,null,"N/A","N/A","N/A"]
[6749,"SSRP1","structure specific recognition protein 1",11,"11q12","CN gain",1.52,1.52,56850035,56859927,"Concordant UP","chromosome, intracellular membrane-bound organelle, intracellular non-membrane-bound organelle, intracellular organelle, nucleus, ","N/A","N/A"]
[29015,"SLC43A3","solute carrier family 43, member 3",11,"11q11","CN gain",1.53,1.53,56931004,56932298,"Concordant UP","N/A","N/A","N/A"]
[23682,"RAB38","RAB38, member RAS oncogene family",11,"11q14","CN gain",2.7,{"v":2.7,"d":"2.70"},87486078,87548247,"Concordant UP","N/A","N/A","N/A"]
[50507,"NOX4","NADPH oxidase 4",11,"11q14.2-q21","CN gain",0.21,{"v":-4.761904761904762,"d":"-4.76"},88699160,88864301,null,"N/A","N/A","N/A"]
[219595,"PSMAL","growth-inhibiting protein 26",11,"11q14.3","CN gain",0.08,{"v":-12.5,"d":"-12.50"},89032112,89071533,null,"N/A","N/A","N/A"]
[80310,"PDGFD","platelet derived growth factor D",11,"11q22.3","CN gain",4.21,4.21,103283124,103540237,"Concordant UP","N/A","N/A","HSA04510:FOCAL ADHESION, HSA04540:GAP JUNCTION, "]
[837,"CASP4","caspase 4, apoptosis-related cysteine peptidase",11,"11q22.2-q22.3","CN gain",2.48,2.48,104318804,104332632,"Concordant UP","cytoplasm, ","h_caspasePathway:Caspase Cascade in Apoptosis, ","HSA04010:MAPK SIGNALING PATHWAY, "]
[834,"CASP1","caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase)",11,"11q23","CN gain",5.16,5.16,104401451,104411067,"Concordant UP","N/A","h_caspasePathway:Caspase Cascade in Apoptosis, h_d4gdiPathway:D4-GDI Signaling Pathway, h_il18Pathway:IL 18 Signaling Pathway, ","HSA01510:NEURODEGENERATIVE DISORDERS, HSA04010:MAPK SIGNALING PATHWAY, HSA05040:HUNTINGTON'S DISEASE, HSA05050:DENTATORUBROPALLIDOLUYSIAN ATROPHY (DRPLA), "]
[114769,"COP1","caspase-1 dominant-negative inhibitor pseudo-ICE",11,"11q22.3","CN gain",4.47,4.47,104417262,104421261,"Concordant UP","N/A","N/A","N/A"]
[57122,"NUP107","nucleoporin 107kDa",12,"12q15","CN gain",1.55,1.55,67366997,67422739,"Concordant UP","endomembrane system, intracellular membrane-bound organelle, intracellular organelle, intrinsic to membrane, nuclear envelope, nucleus, organelle envelope, ","N/A","N/A"]
[4069,"LYZ","lysozyme (renal amyloidosis)",12,"12q15","CN gain",4.79,4.79,68028430,68034280,"Concordant UP","N/A","N/A","N/A"]
[55592,"GOLGA2L1","golgi autoantigen, golgin subfamily a, 2-like 1",12,"12q23.1","CN gain",0.64,{"v":-1.5625,"d":"-1.56"},99074325,99091202,null,"N/A","N/A","N/A"]
[64431,"ACTR6","ARP6 actin-related protein 6 homolog (yeast)",12,"12q23.1","CN gain",1.5,{"v":1.5,"d":"1.50"},99118704,99142332,"Concordant UP","cytoskeleton, intracellular non-membrane-bound organelle, intracellular organelle, ","N/A","N/A"]
[283431,"GAS2L3","growth arrest-specific 2 like 3",12,"12q23.1","CN gain",2.76,2.76,99491619,99542814,"Concordant UP","N/A","N/A","N/A"]
[121601,"TMEM16D","transmembrane protein 16D",12,"12q23.1-q23.2","CN gain",5.89,5.89,99712715,100046539,"Concordant UP","N/A","N/A","N/A"]
[140801,"RPL10L","ribosomal protein L10-like",14,"14q13-q21","CN gain",1.71,1.71,46189971,46190778,"Concordant UP","cytoplasm, intracellular non-membrane-bound organelle, intracellular organelle, ribonucleoprotein complex, ribosome, ","N/A","HSA03010:RIBOSOME, "]
[23463,"ICMT","isoprenylcysteine carboxyl methyltransferase",1,"1p36.21","CN loss",0.66,{"v":-1.5151515151515151,"d":"-1.52"},6203841,6204325,"Concordant DOWN","N/A","N/A","N/A"]
[83715,"ESPN","espin",1,"1p36.31-p36.11","CN loss",0.64,{"v":-1.5625,"d":"-1.56"},6407434,6443576,"Concordant DOWN","N/A","N/A","N/A"]
[7133,"TNFRSF1B","tumor necrosis factor receptor superfamily, member 1B",1,"1p36.3-p36.2","LOH+CN loss",2.94,2.94,12149646,12191863,null,"N/A","N/A","N/A"]
[3155,"HMGCL","3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)",1,"1p36.1-p35","CN loss",0.45,{"v":-2.2222222222222223,"d":"-2.22"},24000954,24024536,"Concordant DOWN","N/A","N/A","N/A"]
[127294,"MYOM3","myomesin family, member 3",1,"1p36.11","CN loss",0.5,{"v":-2,"d":"-2.00"},24255111,24265656,"Concordant DOWN","N/A","N/A","N/A"]
[864,"RUNX3","runt-related transcription factor 3",1,"1p36","CN loss",2.84,2.84,25098645,25128955,null,"N/A","N/A","N/A"]
[57134,"MAN1C1","mannosidase, alpha, class 1C, member 1",1,"1p35","CN loss",0.28,{"v":-3.571428571428571,"d":"-3.57"},25816545,25983522,"Concordant DOWN","N/A","N/A","N/A"]
[10752,"CHL1","cell adhesion molecule with homology to L1CAM (close homolog of L1)",3,"3p26.1","LOH+CN neutral",0.11,{"v":-9.090909090909092,"d":"-9.09"},336428,422437,"Concordant DOWN","N/A","N/A","N/A"]
[9901,"SRGAP3","SLIT-ROBO Rho GTPase activating protein 3",3,"3p25.3","LOH+CN loss",0.52,{"v":-1.923076923076923,"d":"-1.92"},9023661,9233444,"Concordant DOWN","N/A","N/A","N/A"]
[4968,"OGG1","8-oxoguanine DNA glycosylase",3,"3p26.2","CN loss",0.37,{"v":-2.7027027027027026,"d":"-2.70"},9765704,9774087,"Concordant DOWN","N/A","N/A","N/A"]
[285367,"RPUSD3","RNA pseudouridylate synthase domain containing 3",3,"3p25.3","CN loss",0.59,{"v":-1.6949152542372883,"d":"-1.69"},9854533,9860676,"Concordant DOWN","N/A","N/A","N/A"]
[84818,"IL17RC","interleukin 17 receptor C",3,"3p25.3","CN loss",0.77,{"v":-1.2987012987012987,"d":"-1.30"},9933781,9950313,"Concordant DOWN","N/A","N/A","N/A"]
[6529,"SLC6A1","solute carrier family 6 (neurotransmitter transporter, GABA), member 1",3,"3p25-p24","CN loss",2.4,{"v":2.4,"d":"2.40"},11009455,11055934,null,"N/A","N/A","N/A"]
[3269,"HRH1","histamine receptor H1",3,"3p25","CN loss",2.09,2.09,11269399,11279415,null,"N/A","N/A","N/A"]
[64432,"MRPS25","mitochondrial ribosomal protein S25",3,"3p25","LOH+CN neutral",0.54,{"v":-1.8518518518518516,"d":"-1.85"},15065023,15081820,"Concordant DOWN","N/A","N/A","N/A"]
[26061,"HACL1","2-hydroxyacyl-CoA lyase 1",3,"3p24.3","LOH+CN neutral",0.32,{"v":-3.125,"d":"-3.13"},15577258,15618068,"Concordant DOWN","N/A","N/A","N/A"]
[686,"BTD","biotinidase",3,"3p25","LOH+CN neutral",0.44,{"v":-2.272727272727273,"d":"-2.27"},15618258,15662328,"Concordant DOWN","N/A","N/A","N/A"]
[50650,"ARHGEF3","Rho guanine nucleotide exchange factor (GEF) 3",3,"3p21-p13","LOH+CN neutral",0.51,{"v":-1.9607843137254901,"d":"-1.96"},56737299,56810988,"Concordant DOWN","N/A","N/A","N/A"]
[131870,"NUDT16","nudix (nucleoside diphosphate linked moiety X)-type motif 16",3,"3q22.1","LOH+CN neutral",0.63,{"v":-1.5873015873015872,"d":"-1.59"},132583307,132584997,"Concordant DOWN","N/A","N/A","N/A"]
[131034,"CPNE4","copine IV",3,"3q22.1","LOH+CN neutral",0.54,{"v":-1.8518518518518516,"d":"-1.85"},132736273,133236534,"Concordant DOWN","N/A","N/A","N/A"]
[245806,"VGLL2","vestigial like 2 (Drosophila)",6,"6q22.2","LOH+CN loss",0.78,{"v":-1.282051282051282,"d":"-1.28"},117693429,117701417,"Concordant DOWN","N/A","N/A","N/A"]
[222553,"SLC35F1","solute carrier family 35, member F1",6,"6q22.2-q22.31","LOH+CN loss",1.82,1.82,118335381,118745521,null,"N/A","N/A","N/A"]
[2173,"FABP7","fatty acid binding protein 7, brain",6,"6q22-q23","LOH+CN loss",82.83,82.83,123142602,123145736,null,"N/A","N/A","N/A"]
[2037,"EPB41L2","erythrocyte membrane protein band 4.1-like 2",6,"6q23","LOH+CN loss",2.18,2.18,131202183,131231740,null,"N/A","N/A","N/A"]
[5169,"ENPP3","ectonucleotide pyrophosphatase/phosphodiesterase 3",6,"6q22","LOH+CN loss",10.26,10.26,132000217,132109787,null,"N/A","N/A","N/A"]
[5167,"ENPP1","ectonucleotide pyrophosphatase/phosphodiesterase 1",6,"6q22-q23","LOH+CN loss",0.31,{"v":-3.2258064516129035,"d":"-3.23"},132224442,132240671,"Concordant DOWN","N/A","N/A","N/A"]
[84947,"SERAC1","serine active site containing 1",6,"6q25.3","LOH+CN loss",0.61,{"v":-1.639344262295082,"d":"-1.64"},158450536,158509257,"Concordant DOWN","N/A","N/A","N/A"]
[9444,"QKI","quaking homolog, KH domain RNA binding (mouse)",6,"6q26-q27","LOH+CN loss",1.41,1.41,163755664,163911159,null,"N/A","N/A","N/A"]
[9649,"RALGPS1","Ral GEF with PH domain and SH3 binding motif 1",9,"9q33.3","CN loss",0.32,{"v":-3.125,"d":"-3.13"},128716873,129025264,"Concordant DOWN","N/A","N/A","N/A"]
[23452,"ANGPTL2","angiopoietin-like 2",9,"9q34","CN loss",2.03,2.03,128889448,128924865,null,"N/A","N/A","N/A"]
[6136,"RPL12","ribosomal protein L12",9,"9q34","CN loss",1.5,{"v":1.5,"d":"1.50"},129249775,129253505,null,"N/A","N/A","N/A"]
[114789,"SLC25A25","solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25",9,"9q34.11","CN loss",0.36,{"v":-2.7777777777777777,"d":"-2.78"},129870299,129911344,"Concordant DOWN","N/A","N/A","N/A"]
[6122,"RPL3","ribosomal protein L3",22,"22q13","CN loss",2.14,2.14,38038833,38045616,null,"N/A","N/A","N/A"]
[5905,"RANGAP1","Ran GTPase activating protein 1",22,"22q13","CN loss",0.81,{"v":-1.2345679012345678,"d":"-1.23"},39971560,40012162,"Concordant DOWN","N/A","N/A","N/A"]

{"sheet":"DEGs in aberrant regions + RMA ","index":1,"n_rows":72,"n_cols":55,"rows_kept":72,"flags":["formulas_cached_only"]}
["Entrez Gene ID","Gene Symbol","Gene Name","Chromosome","Cytoband","Type","FC","Start Position","End Position","CNA/FC concordance","Concordance type","52CA_K","44DE_K","40RR_K","37BA_K","51MI_K","28RA_K","31NR_K","45DM_K","47CA_K","50PC_K","33BV_K","49CA_K","32GM_K","27CG_K","36MMl_K","46SA_K","44DE_C","40RR_C","37BA_C","28RA_C","35PA_C","41SG_C","33BV_C","32GM_C","36MMl_C","Field47","Field48","Field49","Field50","Field51","Field52","Field53","Field54","Field55","Field56","Field57","Field58","Field59","Field60","Field61","Field62","Field63","Field64","Field65"]
[1007,"CDH9","cadherin 9, type 2 (T1-cadherin)",5,"5p14","CN gain",{"v":0.439803343,"d":"0.44"},26916465,27074431,null,"","4.378121227","4.506356405","4.523158444","5.148039164","4.355415367","4.312652304","4.751812298","4.314121942","6.053481999","4.864877851","4.636488963","4.431663856","4.449868175","5.015075016","4.781015115","4.372854145","6.249626755","5.7527456","6.020316745","6.182720675","5.09872645","6.313968284","6.175106273","5.747975807","5.829985462","","","","","","","","","","","","","","","","","","",""]
[11082,"ESM1","endothelial cell-specific molecule 1",5,"5q11.2","CN gain",{"v":9.645857214,"d":"9.65"},54309899,54317161,"yes","Concordant UP","12.33430163","10.30498378","12.02713951","10.64674132","12.31008191","11.21603609","11.46287026","12.97560494","12.10066873","12.16364914","11.38888508","10.80713325","12.06484714","12.55610952","12.21904007","9.563128357","9.181247843","7.657486934","9.501271506","8.796743025","7.283467707","8.803974825","7.444950147","8.890818287","8.802601327","","","","","","","","","","","","","","","","","","",""]
[3003,"GZMK","granzyme K (granzyme 3; tryptase II)",5,"5q11-q12","CN gain",{"v":12.45616184,"d":"12.46"},54355863,54365717,"yes","Concordant UP","10.56740808","9.999601988","7.858565529","8.282499866","7.487793724","9.993529511","6.733219455","7.027662487","9.560087834","9.250256881","9.958741963","6.878234213","8.496742758","7.319157628","11.58415548","4.98480378","6.182282948","5.689160119","5.661735403","5.131835401","6.019012357","5.552371413","5.154146327","5.532426976","6.55850588","","","","","","","","","","","","","","","","","","",""]
[3001,"GZMA","granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)",5,"5q11-q12","CN gain",{"v":10.81136488,"d":"10.81"},54434229,54441815,"yes","Concordant UP","10.14023295","10.03087354","7.897330818","7.968550887","8.0214215","9.837004134","7.584565768","7.641502685","10.26877763","9.127006555","9.443957769","7.167798337","8.326249653","7.569039095","10.81957701","5.918077125","6.25247712","6.028515053","4.867710973","5.245721466","5.844150491","5.525678807","5.709631768","5.506790403","6.604423608","","","","","","","","","","","","","","","","","","",""]
[140890,"SFRS12","splicing factor, arginine/serine-rich 12",5,"5q12.3","CN gain",{"v":1.631991641,"d":"1.63"},65475918,65510758,"yes","Concordant UP","8.516416691","8.251076228","8.852923475","8.903384071","8.862713055","8.237151208","8.516348887","8.661463984","9.003319611","8.968392048","8.712289114","8.567981075","9.056443613","9.113113237","8.710737812","8.801196692","7.929759987","7.977043357","8.185875261","8.016910239","8.555164236","8.271767491","7.529955259","8.159067997","7.673998885","","","","","","","","","","","","","","","","","","",""]
[5921,"RASA1","RAS p21 protein activator (GTPase activating protein) 1",5,"5q13.3","CN gain",{"v":1.413428889,"d":"1.41"},86599460,86723487,"yes","Concordant UP","9.221120424","8.868433247","8.886759919","8.67078916","9.084096474","8.883409113","8.798558157","9.209499706","8.85229967","8.421438144","8.897116059","9.238320942","9.303470212","9.133805764","9.07692451","9.260000251","8.749688663","8.309888082","8.821299548","7.970524486","8.671795838","8.66188877","8.237411346","8.692325524","8.392020488","","","","","","","","","","","","","","","","","","",""]
[84059,"GPR98","G protein-coupled receptor 98",5,"5q13","CN gain",{"v":0.7743025720000001,"d":"0.77"},89890372,90495788,null,"","5.513013868","4.913802529","5.014138223","5.055131392","4.788127032","5.039275811","4.97808837","5.106924947","5.223531776","4.970169893","4.919738918","4.847227998","5.081358766","4.979390529","4.989259317","4.910325606","5.045350865","5.264503304","5.482327018","5.43827057","5.238696892","5.574287985","5.687422213","5.384460957","5.362485619","","","","","","","","","","","","","","","","","","",""]
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[23463,"ICMT","isoprenylcysteine carboxyl methyltransferase",1,"1p36.21","CN loss",0.66,6203841,6204325,"yes","Concordant DOWN","8.284932587","9.063133298","8.512012025","8.750560329","9.072231916","8.092773727","8.691619265","8.762065071","8.295959955","8.073004172","8.343569341","8.684883461","8.614454085","8.416282829","8.555974042","9.120695218","9.658146613","9.321061986","8.940963285","8.918223855","9.233623748","9.193916842","8.728765143","9.303020089","9.256058399"]
[83715,"ESPN","espin",1,"1p36.31-p36.11","CN loss",0.64,6407434,6443576,"yes","Concordant DOWN","5.938503267","5.62717192","6.069971791","6.000931566","5.460301451","5.518769317","5.75634191","5.623138487","5.714190583","5.797913996","6.077500663","6.296954033","5.697202003","6.074881678","5.936378167","5.733654326","6.539499197","6.498936895","6.852815799","6.26513012","6.011050507","6.348729542","6.788870987","6.482629996","6.646499067"]
[7133,"TNFRSF1B","tumor necrosis factor receptor superfamily, member 1B",1,"1p36.3-p36.2","LOH+CN loss",{"v":2.9431311030000002,"d":"2.94"},12149646,12191863,null,"","8.258138129","8.81752573","8.402346018","8.534961716","8.789526296","8.63391846","8.575302096","7.661059842","8.352232217","7.891978811","8.239306417","7.028481833","8.627165452","8.573137567","8.220340155","6.089544944","6.769873726","6.725710438","6.058427137","6.493628781","7.540555274","6.536192651","6.804726149","6.619520543","6.602780523"]
[3155,"HMGCL","3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)",1,"1p36.1-p35","CN loss",0.45,24000954,24024536,"yes","Concordant DOWN","10.55485281","9.813927957","10.46687518","10.09745087","9.674288163","9.749249336","10.07871484","10.17050646","10.34747941","10.01491274","10.70634947","10.42733775","10.49697163","10.1186355","9.867136903","10.19505733","11.37258657","11.53011968","11.66491057","11.00768935","10.68512774","11.24570611","11.25231861","11.23505442","11.42770171"]
[127294,"MYOM3","myomesin family, member 3",1,"1p36.11","CN loss",{"v":0.5,"d":"0.50"},24255111,24265656,"yes","Concordant DOWN","6.74293902","6.538425676","7.194519858","6.838956591","7.167699759","8.115443712","6.683228416","5.83575124","7.233708854","6.705968746","6.821108033","8.124756117","6.679329653","7.621600427","6.88987193","6.060058046","7.737683344","8.215072362","8.216766878","8.736063683","7.073117137","7.571164032","8.247796922","7.828510897","8.036793207"]
[864,"RUNX3","runt-related transcription factor 3",1,"1p36","CN loss",2.84,25098645,25128955,null,"","6.990328644","7.507637829","5.988795528","6.70113821","6.473940908","7.87583816","6.371923845","5.83189263","6.931957189","7.527089193","7.469963029","6.389266853","6.130329506","6.25038434","7.086225773","5.462719715","5.437574878","5.235898802","5.356457884","5.354741953","5.397238464","5.234544997","5.439007154","5.37849867","5.324732393"]
[57134,"MAN1C1","mannosidase, alpha, class 1C, member 1",1,"1p35","CN loss",0.28,25816545,25983522,"yes","Concordant DOWN","5.245043069","6.769491883","5.300538801","5.752888171","5.575430719","5.433225697","6.1982312","5.796155982","5.182695708","5.375092975","4.624251388","4.715214403","4.971719003","5.325238947","4.943646051","9.246344158","8.874263442","7.638463593","8.028883357","7.614727625","7.84205355","8.412785644","8.365868694","8.728070329","8.127812744"]
[10752,"CHL1","cell adhesion molecule with homology to L1CAM (close homolog of L1)",3,"3p26.1","LOH+CN neutral",{"v":0.10786211400000001,"d":"0.11"},336428,422437,null,null,"4.007640063","4.9765482","4.603113365","4.183801997","4.585367136","4.237000509","4.435497794","4.624203666","4.589301349","4.145113559","4.955322949","4.547694909","7.962904248","4.847575585","3.795502469","3.915830345","8.71862154","8.385530494","8.704838691","7.565239422","8.700523757","8.833261812","7.395958883","8.357947275","8.199432848"]
[9901,"SRGAP3","SLIT-ROBO Rho GTPase activating protein 3",3,"3p25.3","LOH+CN loss",{"v":0.5184276210000001,"d":"0.52"},9023661,9233444,"yes","Concordant DOWN","7.181634326","7.38766531","6.929472175","7.607298679","7.112608653","7.643519084","7.47247144","7.24726962","7.131113074","7.532431256","6.984651088","7.114584627","7.200634009","7.454549381","7.063621105","7.969208297","8.203306518","7.949568652","8.031381496","7.718447505","8.828465173","8.623501901","8.196705721","8.253205862","8.026742706"]
[4968,"OGG1","8-oxoguanine DNA glycosylase",3,"3p26.2","CN loss",0.37,9765704,9774087,"yes","Concordant DOWN","6.988300217","6.880869355","6.981313395","6.707058618","6.697894142","7.238172252","6.870596012","6.96250587","6.740387212","6.969633745","6.756240213","7.461161667","7.088732362","6.850948657","6.749912952","6.695499675","8.66097735","8.378114716","8.606818039","7.960099906","7.282795608","8.200267016","8.763263404","8.495317484","8.34773075"]
[285367,"RPUSD3","RNA pseudouridylate synthase domain containing 3",3,"3p25.3","CN loss",0.59,9854533,9860676,"yes","Concordant DOWN","7.503075244","7.651945243","7.780032622","7.941290821","7.431703143","6.961514264","7.570799551","7.245797109","7.418792047","7.116849487","7.820243326","7.795239232","7.405690835","7.124072943","7.601446391","8.235921974","8.541962544","8.333122857","8.74260852","7.49333758","7.976408354","8.145390919","7.969314775","8.544969939","8.40128068"]
[84818,"IL17RC","interleukin 17 receptor C",3,"3p25.3","CN loss",0.77,9933781,9950313,"yes","Concordant DOWN","7.185125124","6.996058406","7.314373579","7.062277009","7.146965728","7.124566563","7.105729374","7.266752806","7.06056755","7.165794299","7.241802153","7.372194599","7.375534951","6.97484918","7.319932996","7.196543738","7.64571956","7.74585296","7.651221792","7.314326819","7.258009771","7.378232961","7.577043587","7.70160874","7.644623678"]
[6529,"SLC6A1","solute carrier family 6 (neurotransmitter transporter, GABA), member 1",3,"3p25-p24","CN loss",{"v":2.4,"d":"2.40"},11009455,11055934,null,"","5.687410091","6.578789016","5.731261972","5.922151622","7.616963585","4.634440187","6.066623524","7.147164568","5.639059485","6.125971181","5.813192208","5.517498104","5.40320231","6.074086487","5.097701216","5.192714364","5.108674147","4.333788253","5.216452148","4.931584376","4.848620008","4.860248124","4.807458154","4.48358771","4.718246229"]
[3269,"HRH1","histamine receptor H1",3,"3p25","CN loss",2.09,11269399,11279415,null,"","6.802995142","7.180423999","8.127612419","7.581591816","7.644107977","7.055891255","7.676585202","7.990350308","7.281200783","7.595763217","6.949340843","7.185287075","7.664253513","7.910605078","6.640257397","5.878641434","6.084066315","6.366581736","5.947716797","7.298493409","7.130985178","6.108740849","6.105868318","5.917400114","6.157518806"]
[64432,"MRPS25","mitochondrial ribosomal protein S25",3,"3p25","LOH+CN neutral",{"v":0.5414389540000001,"d":"0.54"},15065023,15081820,null,null,"7.357709539","7.337906767","6.939349688","7.346867527","7.265265117","7.46383886","7.339411686","7.155000732","7.284204856","7.54795566","7.274335044","7.637370597","7.133813238","7.100421988","7.247747173","9.473331958","8.385283347","8.552389621","8.26471509","8.139769314","8.392574999","8.710488441","8.475121763","8.623016551","8.601657423"]
[26061,"HACL1","2-hydroxyacyl-CoA lyase 1",3,"3p24.3","LOH+CN neutral",{"v":0.317594775,"d":"0.32"},15577258,15618068,null,null,"8.221710633","8.449450802","8.24183049","7.936053148","7.960006807","8.600731854","7.814189492","8.100541579","8.534424469","7.756908093","8.143008168","8.199198677","8.083024762","7.656709149","8.163850632","9.227960429","9.866128846","10.24750666","10.11475692","9.642683708","9.06457687","10.05518597","9.847753608","9.725787639","9.975677274"]
[686,"BTD","biotinidase",3,"3p25","LOH+CN neutral",{"v":0.444478925,"d":"0.44"},15618258,15662328,null,null,"6.784620234","6.50386644","6.872333955","6.747780868","6.655861042","6.405671951","6.562017552","6.886521871","6.462971886","6.447396104","7.086083653","6.721933567","6.644233698","6.190455031","6.81153763","7.783296704","7.979501476","8.281463339","8.176273086","7.516363516","6.982583185","7.977050686","7.843071581","7.814751457","8.41056274"]
[50650,"ARHGEF3","Rho guanine nucleotide exchange factor (GEF) 3",3,"3p21-p13","LOH+CN neutral",{"v":0.51152212,"d":"0.51"},56737299,56810988,null,null,"9.057444103","10.36991961","8.405158845","9.570526073","9.289785645","9.115438476","9.200145732","8.85437237","9.645710573","9.079537968","9.216387485","8.203568532","9.051112092","8.806584049","8.885079273","9.514523812","10.62429026","10.10459101","10.50816353","9.051074374","9.647227785","10.33518996","10.21140323","10.44897949","10.01411187"]
[131870,"NUDT16","nudix (nucleoside diphosphate linked moiety X)-type motif 16",3,"3q22.1","LOH+CN neutral",{"v":0.630312851,"d":"0.63"},132583307,132584997,null,null,"7.209780686","6.239077566","6.800331424","6.435184236","6.337635835","6.651313221","6.695811424","6.478760791","6.437854032","6.790013147","6.647671461","6.936555951","6.568991408","6.11090764","6.583957821","7.68529942","7.061541186","7.707583271","7.44700101","7.265843813","6.579011719","7.380803664","7.508330957","7.164122022","7.494708057"]
[131034,"CPNE4","copine IV",3,"3q22.1","LOH+CN neutral",{"v":0.5445452590000001,"d":"0.54"},132736273,133236534,null,null,"3.754154578","3.805120369","3.794835676","4.123388539","3.898277226","3.949002314","3.84115801","4.016976611","3.862932165","4.386957686","3.781007289","3.823381422","3.982879806","3.892443282","3.770933637","3.952095835","4.661602363","4.50065958","5.094313335","5.156374994","4.647698434","5.134801691","4.181441225","4.985237527","4.769697454"]
[245806,"VGLL2","vestigial like 2 (Drosophila)",6,"6q22.2","LOH+CN loss",{"v":0.779525184,"d":"0.78"},117693429,117701417,"yes","Concordant DOWN","4.605351765","4.702077805","4.979953197","4.84946165","4.643038337","4.655071516","4.783208325","4.792818334","5.180599296","4.955499038","4.929798596","4.887633335","4.493415692","4.842684497","4.683712234","4.877735848","5.051470397","5.239165975","5.403783666","5.37977044","4.862591416","5.153364504","5.087967558","5.244917074","5.203896627"]
[222553,"SLC35F1","solute carrier family 35, member F1",6,"6q22.2-q22.31","LOH+CN loss",{"v":1.81692084,"d":"1.82"},118335381,118745521,null,"","7.064403565","6.265590412","5.94241054","7.111974169","6.648290244","5.610520497","6.661437376","6.35643034","6.85444261","5.965054103","6.174202786","5.547737484","6.175867939","6.3142391","5.87555718","5.256453013","5.212850152","5.586189441","5.33001254","5.611757253","5.438522225","5.374694848","5.662406319","5.544341996","5.326408177"]
[2173,"FABP7","fatty acid binding protein 7, brain",6,"6q22-q23","LOH+CN loss",{"v":82.82740107,"d":"82.83"},123142602,123145736,null,"","12.36910383","9.705599923","5.68536272","11.04033159","12.0815832","9.54639192","11.55973085","7.411164875","12.34040939","6.120213347","4.587146621","9.795442842","9.054647525","11.7183041","12.92538965","4.914107663","4.579881207","4.648446447","4.57341116","4.557202975","4.841431612","4.784073452","4.791044295","4.764715247","4.805734038"]
[2037,"EPB41L2","erythrocyte membrane protein band 4.1-like 2",6,"6q23","LOH+CN loss",{"v":2.177382494,"d":"2.18"},131202183,131231740,null,"","7.557725063","7.456183534","6.728533281","7.352892103","7.740279151","7.666188091","7.28395098","7.011915156","7.087890448","7.27693712","6.919441729","7.171175085","7.037590388","6.551575396","7.372563023","4.881018378","5.72247248","6.128466053","5.715074147","5.836659773","6.107271673","6.388130883","5.984937042","5.910877659","6.529384271"]
[5169,"ENPP3","ectonucleotide pyrophosphatase/phosphodiesterase 3",6,"6q22","LOH+CN loss",{"v":10.2556032,"d":"10.26"},132000217,132109787,null,"","13.02721681","11.3225348","11.29529975","11.65797899","11.86512427","12.08309763","12.41517719","12.53918769","11.78914374","11.15186387","12.14391203","11.38421706","10.75159174","10.34968209","11.72373773","6.102230279","8.85822345","8.186248716","8.558071795","7.922069742","6.509738879","8.837266976","8.096881583","8.851741307","8.361901206"]
[5167,"ENPP1","ectonucleotide pyrophosphatase/phosphodiesterase 1",6,"6q22-q23","LOH+CN loss",{"v":0.30651648800000003,"d":"0.31"},132224442,132240671,"yes","Concordant DOWN","5.41941654","6.709138123","5.728394382","6.171295063","5.910847119","6.802026821","5.766341656","6.168116997","6.329868863","6.741314018","5.78672538","7.52754647","5.830837713","6.609378432","5.966472617","5.784845504","8.536539853","7.282542662","7.59775607","8.655894766","7.052475263","8.028012908","8.040234111","8.375180866","8.15116475"]
[117289,"TAGAP","T-cell activation GTPase activating protein",6,"6q25.3","LOH+CN loss",{"v":1.416886501,"d":"1.42"},159376015,159386172,null,"","5.426703002","5.176646605","4.888008811","5.1743813","5.054180775","5.442872","5.282072367","4.897634638","5.527906722","5.28814719","5.343435342","5.132753414","5.429498534","4.990022034","5.397596123","4.936372438","4.62080093","4.878118425","4.438488513","4.795948117","4.689752686","4.803115531","5.007616029","4.801165416","4.606380388"]
[9444,"QKI","quaking homolog, KH domain RNA binding (mouse)",6,"6q26-q27","LOH+CN loss",{"v":1.414743716,"d":"1.41"},163755664,163911159,null,"","7.88141634","7.548038721","7.400101273","7.699006875","7.941415271","7.94515846","7.587241032","7.806657396","7.997066335","7.520129335","7.567673388","7.21943225","7.797404819","7.682259429","7.50399589","6.977252372","7.201188451","7.077379958","7.145330441","7.354011671","7.226640317","7.129577045","7.12162743","6.923576972","7.120292741"]
[9649,"RALGPS1","Ral GEF with PH domain and SH3 binding motif 1",9,"9q33.3","CN loss",0.32,128716873,129025264,"yes","Concordant DOWN","6.583224302","7.28300282","6.151771161","6.792795583","6.942253849","7.383691487","6.783924218","6.555672282","7.179595225","7.204646596","6.589776055","8.489556388","7.032545055","6.912336092","6.612343202","10.23333349","9.143315428","9.166715326","9.461799373","8.422247322","9.415697171","9.865199111","9.146442672","9.263732574","9.108237227"]
[23452,"ANGPTL2","angiopoietin-like 2",9,"9q34","CN loss",2.03,128889448,128924865,null,"","6.984945013","7.186104622","7.871642476","6.454065822","7.57871734","6.473974177","7.284147545","8.446198892","6.625819922","6.951058227","6.775481232","6.911643214","6.873955862","7.347882675","7.611745167","6.215950378","6.391168664","5.97510044","5.954878599","6.205626558","6.631217051","5.899301833","6.232273528","6.264969418","6.313489869"]
[6136,"RPL12","ribosomal protein L12",9,"9q34","CN loss",{"v":1.5,"d":"1.50"},129249775,129253505,null,"","13.45195014","13.64005886","13.06622464","13.3296021","12.80333542","12.99601493","13.37247483","13.63686252","13.40770998","12.48969221","13.12015359","13.25118099","12.79885714","13.52900352","13.12491432","12.79596101","12.59370858","12.71357844","12.51901204","12.24947174","12.89641543","12.67005409","12.98347257","12.55493998","12.72620663"]
[114789,"SLC25A25","solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25",9,"9q34.11","CN loss",0.36,129870299,129911344,"yes","Concordant DOWN","7.617504852","7.727396387","7.667917721","7.859067244","7.706342106","7.519659094","7.584667842","7.695637169","7.24631787","7.357442606","7.31741587","7.6272205","8.393363608","7.53911096","7.568702588","8.795697507","8.824235986","9.846854591","8.766184064","9.143691103","9.336946394","10.02136784","8.791121622","8.248022158","8.756731773"]
[6122,"RPL3","ribosomal protein L3",22,"22q13","CN loss",2.14,38038833,38045616,null,"","13.2247705","12.61157594","13.52770012","12.43913384","13.23525261","12.32490495","12.99267507","13.03619556","12.95275162","12.32490495","13.23428018","12.24953425","13.09967077","12.68851169","12.87966451","12.16275455","11.77167527","11.75871929","11.86794419","11.58796045","12.00361922","11.80563718","10.9519198","11.76327716","11.61892141"]
[5905,"RANGAP1","Ran GTPase activating protein 1",22,"22q13","CN loss",0.81,39971560,40012162,"yes","Concordant DOWN","6.113720547","6.375830618","6.370098728","6.509330318","6.412288486","6.38894436","6.484189941","6.245060302","6.237492169","6.388729308","6.297574062","6.477070536","6.366247815","6.314984123","6.352935105","6.463556311","6.812004473","6.637645864","6.784154992","6.708817452","6.605336089","6.392424008","6.765005529","6.67808776","6.585655125"]