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["Additional file 3 – Protein identities and changes in their expression in jin1-9/myc2 plants compared to wild-type plants after 6 h/48 h of mock treatment and between untreated jin1-9/myc2 and wild-type plants."]
[]
["Spot No.a","Categery and name","Plant species","gi Numberb","Thero pI/kDac","Scored","SCe  (%)","PNf","mock-treated jin1-9/ mock-treated WT g",null," mock-treated jin1-9/ mock-treated WT g",null,"mock-treated jin1-9/   MeJA-treated jin1-9",null,"mock-treated jin1-9/   MeJA-treated jin1-9"]
[{"$nulls":8},"6h",null,"48h",null,"6h",null,"48h"]
[{"$nulls":8},"Ratio","P","Ratio","P","Ratio","P","Ratio","P"]
[null,"Glucosinolate metabolism"]
[216,"glutathione S-transferase ERD13 (GSTF10)","A. thaliana","gi|15224582","5.54/29.8",66,5,2,-1.04,{"v":0.2,"d":"0.20"},-3.22,0.09,-1.23,0.04,{"v":1.3,"d":"1.30"},0.04]
[327,"myrosinase-binding-like protein ","A. thaliana","gi|30684083","5.12/48.5",131,21,6,{"v":-4,"d":"-4.00"},0.12,-1.28,0.03,-2.22,0.15,-1.69,0.09]
[509,"sulfotransferase 18 ","A. thaliana","gi|15221130","5.52/40.7",177,13,4,1.04,0.03,-9999,0.06,9999,0.06,"—","—"]
[523,"3-isopropylmalate dehydrogenase (IMDH)","A. thaliana","gi|4512615","5.60/44.2",149,21,5,-1.08,0.03,-1.14,0.01,-1.15,0.06,9999,0.12]
[556,"amidase 1 ","A. thaliana","gi|18390964 ","5.83/45.4",152,22,6,-5.56,0.08,{"v":-1.020822,"d":"-1.02"},0.01,9999,0.14,9999,0.13]
[864,"thioglucoside glucohydrolase 1 (TGG1)","A. thaliana","gi|15809938","5.67/61.7",141,10,4,{"v":-1.046711,"d":"-1.05"},0.04,-9999,0.61,9999,0.11,"—","—"]
[null,"Stress and defense"]
[113,"dehydroascorbate reductase、glutathione S-transferase DHAR1","A. thaliana","gi|8778432 ","6.82/50.6",150,6,2,-1.23,0.02,-1.02,0.01,-1.12,0.03,1.07,0.02]
[161,"putative glyoxalase","A. thaliana","gi|9828630","6.97/40.3",85,12,3,-2.17,0.12,1.15,0.12,9999,0.06,1.17,0.05]
[183,"glutathione S-transferase (AtGST1) (AtGSTF3)","A. thaliana","gi|497788 ","5.80/23.5",116,11,2,-3.71,0.13,-1.36,0.03,9999,0.09,1.51,0.06]
[203,"putative arginase","A. thaliana","gi|15236635","5.90/38.1",163,12,4,-1.28,0.04,-1.23,0.04,1.61,0.14,1.52,0.09]
[275,"HSP20-like chaperones protein","A. thaliana","gi|3193303","4.42/28.0",103,16,4,-3.03,0.06,{"v":1.2,"d":"1.20"},0.04,9999,0.09,9999,0.12]
[338,"putative plastid-lipid-associated protein 1","A. thaliana","gi|15233357","5.45/35.0",161,23,5,1.28,0.01,-1.23,0.01,9999,0.08,1.47,0.02]
[408,"O-acetylserine (thiol) lyase B, oasB","A. thaliana","gi|15224351 ","8.13/42.0",183,29,8,-1.15,{"v":0,"d":"0.00"},{"v":1,"d":"1.00"},0.05,1.24,0.05,9999,{"v":0.1,"d":"0.10"}]
[437,"O-acetylserine (thiol) lyase, oasC","A. thaliana","gi|6899947","6.96/41.5",96,12,3,-1.23,0.05,-2.94,0.09,-2.77,0.1,9999,0.07]
[872,"luminal binding protein (BiP2)","A. thaliana","gi|1303695","5.08/73.7",165,11,6,-7.14,0.08,-9999,0.16,9999,0.07,"—","—"]
[null,"Photosynthesis "]
[126,"chlorophyll a/b-binding protein","A. thaliana","gi|13265501   ","6.52/26.1",178,9,3,1.05,0.03,-2.45,0.08,1.14,0.04,3.09,0.09]
[170,"chloroplast NAD-MDH ","A. thaliana","gi|3256066","8.48/42.6",295,14,5,1.08,0.09,-1.34,0.05,1.13,0.08,{"v":1.4,"d":"1.40"},0.15]
[233,"coproporphyrinogen III oxidase ","A. thaliana","gi|240254000","6.24/44.1",155,35,9,-1.14,0.03,-1.03,0.03,-1.64,0.07,-1.28,{"v":0,"d":"0.00"}]
[247,"uroporphyrinogen decarboxylase 2","A. thaliana","gi|15226690","8.29/43.7",517,32,11,-3.03,0.01,-1.71,0.07,-1.02,0.06,9999,0.09]
[346,"ribulosebisphosphate carboxylase","A. thaliana","gi|1944432   ","6.12/48.0",167,16,7,1.02,0.02,-2.35,0.15,1.11,0.18,9999,0.09]
[865,"transketolase-like protein ","A. thaliana","gi|7329685","5.80/81.9",113,17,8,1.28,0.02,-9999,0.07,1.16,0.06,"—","—"]
[null,"Carbohydrate metabolism"]
[272,"3-oxoacyl-[acyl-carrier protein] reductase (NADH)","A. thaliana","gi|15229203","6.12/28.2",61,9,2,1.24,0.02,-1.02,0.04,9999,0.07,-1.21,0.03]
[766,"2-oxoglutarate dehydrogenase, E3 subunit ","A. thaliana","gi|4210334 ","6.96/54.0",137,34,5,1.29,0.04,-9999,0.06,9999,0.08,"—","—"]
[null,"Protein folding and destination"]
[38,"40S ribosomal protein S12-1 ","A. thaliana","gi|15218373","5.38/15.7",73,22,2,-2.56,0.12,-1.06,0.03,-1.91,0.09,-1.17,{"v":0,"d":"0.00"}]
[178,"ATP-dependent Clp protease proteolytic subunit 2 ","A. thaliana","gi|18420643 ","6.71/26.4",92,14,3,1.18,0.14,-1.05,0.07,9999,0.07,9999,0.11]
[799,"TCP-1/cpn60 chaperonin family protein ","A. thaliana","gi|15231255","5.60/63.7",308,27,12,1.42,0.12,-9999,0.07,9999,0.11,"—","—"]
[null,"other"]
[30,"SRPBCC ligand-binding domain-containing protein ","A. thaliana","gi|15236566","5.91/17.6",72,15,2,-1.79,0.06,-2.56,0.12,-1.39,{"v":0.032,"d":"0.03"},9999,0.06]
["a Assigned spot number as indicated in Fig. 1. b Database accession numbers according to NCBInr. c Theoretical mass (kDa) and pI of identiﬁed proteins. d Mascot score reported after searching against the NCBInr database. e Sequence coverage. f Number of peptides sequenced. g Mean of relative protein abundance and P value. Three treatments were performed."]

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[]
[null,"Photosynthesis ",5]
[null,"Carbohydrate metabolism",3]
[null,"Stress and defense",9]
[null,"Glucosinolate metabolism",6]
[null,"Protein folding and destination",3]
[null,"Other",1]
[null,null,27]

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