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["Overview of the gene sets regulated in the stress relevant gene set collections in the kiwifruit group when compared to controls. A brief description of each gene set is included with Pubmed id reference."]
["Gene set collection","Gene set (www.broadinstitute.org/gsea)","genes in gene set (n)","nom p value","FDR %","Brief description of gene sets"]
[null,"GNF2_APEX1",78,"<0.01",0.34,"Neighborhood of APEX1 in the GNF2 expression compendium (Broad Inst)"]
["DNA and repair","GCM_APEX1",106,"<0.01",1.77,"Neighborhood of APEX1 in the GCM expression compendium (Broad Inst)"]
[null,"MMS_HUMAN_LYMPH_HIGH_24HRS_DN",12,"<0.01",1.8,"Down-regulated following treatment of human lymphocytes (TK6) with methyl methanesulfonate (Pubmed 15515172)"]
[null,"DOUBLE_STRAND_BREAK_REPAIR",22,"<0.01",4.3,"Genes annotated by the GO term GO:0006302. (Pubmed 10802651)"]
[null,"H2O2_CSBDIFF_C2",33,"<0.01",3.71,"Deficient induction by H2O2 fibroblasts defective in transcription-coupled DNA repair base excision repair transcription and chromatin structural organization  (Pubmed 12606941)"]
[null,"UVC_XPCS_4HR_DN",210,"<0.01",3.38,"Down-regulated at 4 hours following treatment of XPB/TTD fibroblasts with 3 J/m^2 UVC (Pubmed 15608684)"]
[null,"UVC_XPCS_8HR_DN",371,"<0.01",3.01,"Down-regulated at 8 hours following treatment of XPB/TTD fibroblasts with 3 J/m^2 UVC (Pubmed 15608684)"]
[null,"UVC_TTD_ALL_DN",325,"<0.01",2.95,"Down-regulated at any timepoint following treatment of XPB/TTD fibroblasts with 3 J/m^2 UVC (Pubmed 15608684)"]
[null,"UVC_XPCS_ALL_DN",432,"<0.01",2.96,"Down-regulated at any timepoint following treatment of XPB/CS fibroblasts with 3 J/m^2 UVC (Pubmed 15608684)"]
[null,"UVC_TTD_8HR_DN",150,"<0.01",3.22,"Down-regulated at 8 hours following treatment of XPB/TTD fibroblasts with 3 J/m^2 UVC (Pubmed 15608684)"]
[null,"UVC_TTD_4HR_DN",266,"<0.01",4.34,"Down-regulated at 4 hours following treatment of XPB/TTD fibroblasts with 3 J/m^2 UVC (Pubmed 15608684)"]
[null,"DNA_REPAIR",121,"<0.01",4.53,"Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. (Pubmed 10802651)"]
[null,"REOVIRUS_HEK293_UP",219,"<0.01",4.53,"Up-regulated at any timepoint up to 24 hours following infection of HEK293 cells with reovirus strain T3Abney (Pubmed 12885910 )"]
["Hypoxi*","V$HIF1_Q5",180,"<0.01",2.83,"Genes with promoter regions  for HIF1A: hypoxia-inducible factor 1 (Broad)"]
[null,"UVC_HIGH_D2_DN",36,"<0.01",3.15,"Down-regulated consistently at 6-24 hours in human skin fibroblasts after high dose UV C ( Pubmed 12907719)"]
["Apoptosis","UVC_HIGH_ALL_DN",273,"<0.01",1.87,"Down-regulated at any timepoint in human skin fibroblasts after high dose UVC ( Pubmed 12907719)"]
[null,"CMV_HCMV_TIMECOURSE_6HRS_DN",47,"<0.01",4.6,"Down-regulated in fibroblasts following infection with human cytomegalovirus  (Pubmed 11711622 )"]
[null,"UVC_HIGH_D9_DN",19,"<0.01",4.91,"Progressively down-regulated through 24 hrs following treatment of WS1 human skin fibroblasts with UVC at a high dose ( Pubmed 12907719)"]
["Interleukin","HOGERKORP_CD44_UP",20,"<0.01",0.44,"Genes directly regulated and induced by anti-CD44 (Pubmed 12411303)"]
["Immune and response","CMV_HCMV_TIMECOURSE_6HRS_DN",47,"<0.01",4.94,"Down-regulated in fibroblasts following infection with human cytomegalovirus  (Pubmed 11711622 )"]
[null,"MAGRANGEAS_MULTIPLE_MYELOMA_IGG_VS_IGA_UP *(downregulated)",14,0.02,4.77,"Genes upregulated in multiple myeloma plasma cells that secrete the heavy chain immunoglobulin IgG versus those that secrete IgA (Pubmed 12623842)."]

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