{"text_format":"3","workbook":"xls","n_sheets":3,"sheets":["piwi_nei","piwi_close","Sheet1"],"not_rendered":{"external_links":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

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[null,null,"Data for 20-gene window neighborhoods for prokaryotic argonautes homologs (predicted operons highlighted by yellow)"]
[]
[null,null,"Start","Stop",null,"Strand","Length","GI","Comments related to this work","COG used for Fisher Omnibus Test","Best CDD hit (not COG)",null,"Best CDD hit (COG)"]
[{"$nulls":4},"#",225872323,"Acidobacterium_capsulatum_ATCC_51196","/am/ftp-genomes/Bacteria/Acidobacterium_capsulatum_ATCC_51196/NC_012483.ptt"]
["COG5343S,COG5662K, hypothetical protein","ACP_0644",727920,728720,null,"+",266,225872313,null,null,"pfam10099","Uncharacterized protein conserved in bac","COG5343","Uncharacterized protein conserved in bac"]
["COG1943L, hypothetical protein","ACP_0645",729287,729793,null,"-",168,225872314,null,null,"pfam07605,pfam03759","Protein of unknown function (DUF1568). T ; PRONE (Plant-specific Rop nucleotide exc","COG1943","Transposase and inactivated derivatives "]
["COG0514L, ATP-dependent DNA helicase RecQ","ACP_0647",730093,732099,null,"+",668,225872315,null,null,"pfam00270,cd00079,pfam00570","DEAD/DEAH box helicase. Members of this  ; Helicase superfamily c-terminal domain;  ; HRDC domain. The HRDC (Helicase and RNas","COG0514,COG0514","Superfamily II DNA helicase [DNA replica ; Superfamily II DNA helicase [DNA replica"]
["COG0582L, phage integrase family protein","ACP_0648",732520,733947,null,"+",475,225872316,null,null,"cd01182","DNA breaking-rejoining enzymes, intergra","COG4974","Site-specific recombinase XerD [DNA repl"]
["COG4694S, hypothetical protein","ACP_0649",734228,736459,null,"-",743,225872317,null,null,"pfam02463,pfam03301,cd02017,pfam02463,cd03269","RecF/RecN/SMC N terminal domain. This do ; Tryptophan 2,3-dioxygenase. ","COG4694","Uncharacterized protein conserved in bac"]
["COG4227L, putative antirestriction protein ArdC","ACP_0650",736956,737972,null,"+",338,225872318,null,null,"pfam08401","Domain of unknown function (DUF1738). Th","COG4227","Antirestriction protein [DNA replication"]
["COG1694R, MazG domain protein","ACP_0651",738907,739773,null,"+",288,225872319,null,null,"pfam03819,pfam01589","MazG nucleotide pyrophosphohydrolase dom ; Alphavirus E1 glycoprotein. E1 forms a h","COG1694","Predicted pyrophosphatase [General funct"]
["COG0464O, ATPase, AAA family","ACP_0652",739775,742231,null,"+",818,225872320,null,null,"pfam00004","ATPase family associated with various ce","COG0464","ATPases of the AAA+ class [Posttranslati"]
["hypothetical protein","ACP_0653",742270,742380,null,"+",36,225872321]
["hypothetical protein","ACP_0654",742383,743783,null,"+",466,225872322,"TIR domain fused to APAZ domain",null,"smart00255","Toll - interleukin 1 - resistance; "]
["hypothetical protein","ACP_0655",743783,745336,null,"+",517,225872323,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","ACP_0658",747608,748033,null,"+",141,225872324]
["COG0147EH, hypothetical protein","ACP_0657",747788,748105,null,"-",105,225872325,null,null,"pfam03557","Bunyavirus glycoprotein G1. Bunyavirus h"]
["COG2199T, sensory box/GGDEF family protein","ACP_0660",750096,751622,null,"-",508,225872326,null,null,"pfam00990,pfam02460","GGDEF domain. This domain is found linke ; Patched family. The transmembrane protei","COG2199,COG2194","c-di-GMP synthetase (diguanylate cyclase ; Predicted membrane-associated, metal-dep"]
["COG3293L, ISAca3, transposase orfA","ACP_0661",751880,752386,null,"+",168,225872327,{"$nulls":4},"COG3293","Transposase and inactivated derivatives "]
["COG3293L, ISAca3, transposase orfB","ACP_0662",752302,752655,null,"+",117,225872328,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3293","Transposase and inactivated derivatives "]
["COG0507L, DNA helicase domain protein","ACP_0663",752677,753114,null,"+",145,225872329,null,null,"pfam08751","TrwC relaxase. Relaxases are DNA strand "]
["hypothetical protein","ACP_0664",753484,754284,null,"+",266,225872330,null,null,"cd00093,pfam03837","Helix-turn-helix XRE-family like protein ; RecT family. The DNA single-strand annea"]
["COG1396K, DNA-binding protein","ACP_0665",754289,754612,null,"+",107,225872331,null,null,"cd00093,pfam08908","Helix-turn-helix XRE-family like protein ; Domain of unknown function (DUF1852). Th","COG1396","Predicted transcriptional regulators [Tr"]
["hypothetical protein","ACP_0666",754605,754871,null,"+",88,225872332]
["COG0693R, PfpI family protein","ACP_0667",755245,756009,null,"-",254,225872333,null,null,"cd03139","Type 1 glutamine amidotransferase (GATas","COG4977","Transcriptional regulator containing an "]
[{"$nulls":4},"#",225874783,"Acidobacterium_capsulatum_ATCC_51196","/am/ftp-genomes/Bacteria/Acidobacterium_capsulatum_ATCC_51196/NC_012483.ptt"]
["COG5340K, hypothetical protein","ACP_3228",3741119,3741715,null,"-",198,225874773,null,null,"pfam04703,pfam08506","FaeA-like protein. This family represent ; Cse1. This domain is present in Cse1 nuc","COG5340","Predicted transcriptional regulator [Tra"]
["COG3631R, limonene-1,2-epoxide hydrolase catalytic domain protein","ACP_3230",3742326,3742751,null,"+",141,225874774,null,null,"pfam07858","Limonene-1,2-epoxide hydrolase catalytic","COG3631","Ketosteroid isomerase-related protein [G"]
["hypothetical protein","ACP_3229",3742718,3742870,null,"-",50,225874775,{"$nulls":4},"COG3233","Predicted deacetylase [General function "]
["hypothetical protein","ACP_3231",3742857,3743537,null,"-",226,225874776,null,null,"pfam09944","Uncharacterized protein conserved in bac","COG4849","Predicted nucleotidyltransferase [Genera"]
["hypothetical protein","ACP_3232",3744649,3745233,null,"-",194,225874777,null,null,"pfam06621","Single-minded protein C-terminus. This f","COG3068","Uncharacterized protein conserved in bac"]
["group II intron-encoded maturase","ACP_3233",3746165,3747094,null,"+",309,225874778,null,null,"cd03807","This family is most closely related to t","COG1165","2-succinyl-6-hydroxy-2,4-cyclohexadiene-"]
["COG1484L, ISAca2, transposase istB","ACP_3235",3748629,3749411,null,"+",260,225874779,null,null,"pfam01695","IstB-like ATP binding protein. This prot","COG1484","DNA replication protein [DNA replication"]
["hypothetical protein","ACP_3237",3752378,3752833,null,"+",151,225874780,{"$nulls":4},"COG1217","Predicted membrane GTPase involved in st"]
["COG3505U, hypothetical protein","ACP_3238",3752837,3754831,null,"+",664,225874781,null,null,"cd01127","Bacterial conjugation protein TrwB,  ATP","COG3505","Type IV secretory pathway, VirD4 compone"]
["COG0507L, conjugative relaxase domain protein","ACP_3239",3754841,3757594,null,"+",917,225874782,null,null,"pfam08751,pfam02562","TrwC relaxase. Relaxases are DNA strand  ; PhoH-like protein. PhoH is a cytoplasmic","COG0507,COG0507,COG2989","ATP-dependent exoDNAse (exonuclease V),  ; ATP-dependent exoDNAse (exonuclease V),  ; Uncharacterized protein conserved in bac"]
["COG1431J, PIWI domain protein","ACP_3240",3757735,3760005,null,"+",756,225874783,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","ACP_3241",3760002,3761207,null,"+",401,225874784,"Rec-like endonuclease fused to uncharacterized N-terminal domain",null,"cd01037,pfam00342","Superfamily of nucleases including Short ; Phosphoglucose isomerase. Phosphoglucose"]
["hypothetical protein","ACP_3242",3761417,3762490,null,"+",357,225874785,{"$nulls":4},"COG3014,COG2162","Uncharacterized protein conserved in bac ; Arylamine N-acetyltransferase [Secondary"]
["hypothetical protein","ACP_3243",3762572,3763366,null,"+",264,225874786,{"$nulls":4},"COG3287","Uncharacterized conserved protein [Funct"]
["COG0210L, helicase, UvrD/REP family","ACP_3244",3763393,3765093,null,"-",566,225874787,null,null,"pfam00580,pfam06519","UvrD/REP helicase. The Rep family helica ; TolA protein. This family consists of se","COG0210","Superfamily I DNA and RNA helicases [DNA"]
["COG3593L, hypothetical protein","ACP_3245",3765102,3766949,null,"-",615,225874788,null,null,"cd01026,cd03242,pfam00266","TOPRIM_OLD: topoisomerase-primase (TOPRI ; RecF is a recombinational DNA repair ATP ; Aminotransferase class-V. This domain is","COG3593","Predicted ATP-dependent endonuclease of "]
["COG1257I, hypothetical protein","ACP_3246",3767035,3767964,null,"+",309,225874789,{"$nulls":4},"COG1012","NAD-dependent aldehyde dehydrogenases [E"]
["hypothetical protein","ACP_3247",3767973,3769658,null,"+",561,225874790]
["hypothetical protein","ACP_3248",3769695,3771140,null,"-",481,225874791,null,null,"pfam07261","Replication initiation and membrane atta"]
["COG1484L, ISAca2, transposase istB","ACP_3249",3771455,3772237,null,"-",260,225874792,null,null,"pfam01695","IstB-like ATP binding protein. This prot","COG1484","DNA replication protein [DNA replication"]
["hypothetical protein","ACP_3251",3773555,3774124,null,"-",189,225874793,{"$nulls":4},"COG5047","Vesicle coat complex COPII, subunit SEC2"]
[{"$nulls":4},"#",212639457,"Anoxybacillus_flavithermus_WK1","/am/ftp-genomes/Bacteria/Anoxybacillus_flavithermus_WK1/NC_011567.ptt"]
["COG0526OC, Membrane-associated thiol-disulfide oxidoreductase","Aflv_1617",1610609,1611610,null,"-",333,212639447,null,"COG1225","cd02966","TlpA-like family; composed of  TlpA, Res","COG1225","Peroxiredoxin [Posttranslational modific"]
["COG2105S, hypothetical protein","Aflv_1618",1611740,1612132,null,"-",130,212639448,null,"COG2105","pfam06094","AIG2-like family. AIG2 is an Arabidopsis","COG2105","Uncharacterized conserved protein [Funct"]
["Uncharacterized conserved domain protein","Aflv_1619",1612162,1612635,null,"-",157,212639449,null,null,"cd06661","GGCT-like domains, also called AIG2-like","COG3703","Uncharacterized protein involved in cati"]
["COG3393R, Predicted acetyltransferase","Aflv_1620",1612695,1613573,null,"-",292,212639450,null,"COG3393","pfam00583","Acetyltransferase (GNAT) family. This fa","COG3393","Predicted acetyltransferase [General fun"]
["COG4636S, Endonuclease, Uma2 family (restriction endonuclease fold)","Aflv_1621",1613581,1614204,null,"+",207,212639451,null,"COG4636","cd06260","Domain of unknown function (DUF820). Thi","COG4636","Endonuclease, Uma2 family (restriction e"]
["COG2761Q, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis","Aflv_1622",1614252,1614959,null,"-",235,212639452,null,"COG2761","cd03024","DsbA family, FrnE subfamily; FrnE is a D","COG2761","Predicted dithiol-disulfide isomerase in"]
["COG0346E, Glyoxalase, Dioxygenase superfamily","Aflv_1623",1615212,1615589,null,"-",125,212639453,null,"COG0346","pfam00903","Glyoxalase/Bleomycin resistance protein/","COG0346","Lactoylglutathione lyase and related lya"]
["COG0694O,COG1413C, HEAT repeats containing protein","Aflv_1624",1615688,1616827,null,"-",379,212639454,null,"COG1413","pfam08712,pfam02985,smart00567","Scaffold protein Nfu/NifU N terminal. Th ; HEAT repeat. The HEAT repeat family is r ; E-Z type HEAT repeats; Present in subuni","COG1413","FOG: HEAT repeat [Energy production and "]
["COG0494LR, NUDIX family hydrolase","Aflv_1625",1616964,1617455,null,"-",163,212639455,null,"COG1051","pfam00293","NUDIX domain. ","COG1051","ADP-ribose pyrophosphatase [Nucleotide t"]
["COG0494LR, NUDIX family hydrolase","Aflv_1626",1617445,1618059,null,"-",204,212639456,"NUDIX family hydrolase","COG1051","cd04676","Members of the Nudix hydrolase superfami","COG1051","ADP-ribose pyrophosphatase [Nucleotide t"]
["COG1204R,COG1431J, Argonaute, predicted to be implicated in RNA metabolism","Aflv_1627",1618069,1620192,null,"-",707,212639457,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","Aflv_1628",1620256,1620951,null,"-",231,212639458]
["Transposase","Aflv_1629",1620975,1621796,null,"-",273,212639459,null,null,"pfam04754,pfam04111","Putative transposase, YhgA-like. This fa ; Autophagy protein Apg6. In yeast, 15 Apg","COG5464","Uncharacterized conserved protein [Funct"]
["COG3547L, Transposase","Aflv_1630",1622209,1623525,null,"-",438,212639460,null,"COG3547","pfam02371,pfam01548,pfam04336","Transposase IS116/IS110/IS902 family. Tr ; Transposase. Transposase proteins are ne ; Protein of unknown function, DUF479. Thi","COG3547","Transposase and inactivated derivatives "]
["hypothetical protein","Aflv_1631",1623601,1623813,null,"+",70,212639461]
["Predicted nucleic acid-binding protein, contains PIN domain","Aflv_1632",1624159,1624653,null,"+",164,212639462,null,null,"pfam01850","PIN domain. This PIN (PilT N terminus) d","COG1487","Predicted nucleic acid-binding protein, "]
["COG2963L, Transposase","Aflv_1633",1625021,1625335,null,"+",104,212639463,null,"COG2963","pfam01527","Transposase. Transposase proteins are ne","COG2963","Transposase and inactivated derivatives "]
["COG2801L, Transposase","Aflv_1634",1625416,1626192,null,"+",258,212639464,null,"COG2801","PHA02517","putative transposase OrfB; Reviewed","COG2801","Transposase and inactivated derivatives "]
["COG1479S, hypothetical protein","Aflv_1635",1626448,1628415,null,"-",655,212639465,null,"COG1479","pfam03235,pfam07510","Protein of unknown function DUF262. ","COG1479","Uncharacterized conserved protein [Funct"]
["hypothetical protein","Aflv_1636",1628644,1628727,null,"-",27,212639466]
["COG4469R, Competence protein CoiA-like family","Aflv_1637",1628810,1630120,null,"-",436,212639467,null,"COG4469","pfam06054","Competence protein CoiA-like family. Man","COG4469","Competence protein CoiA-like family, con"]
[{"$nulls":4},"#",15606619,"Aquifex_aeolicus","/am/ftp-genomes/Bacteria/Aquifex_aeolicus/NC_000918.ptt"]
["minor pilin","aq_1433",1019985,1020344,null,"+",119,15606609,null,"COG2165","pfam09878","Predicted membrane protein (DUF2105). Th","COG4969","Tfp pilus assembly protein, major pilin "]
["pilin","aq_1434",1020328,1020765,null,"+",145,15606610,null,null,"pfam07963","Prokaryotic N-terminal methylation motif","COG4969","Tfp pilus assembly protein, major pilin "]
["COG4795U, pilin","aq_1435",1020672,1021103,null,"+",143,15606611,null,null,"pfam07963,pfam01156","Prokaryotic N-terminal methylation motif ; Inosine-uridine preferring nucleoside hy","COG4795","Type II secretory pathway, component Pul"]
["hypothetical protein","aq_1436",1021100,1021930,null,"+",276,15606612,null,"COG2165","pfam07963","Prokaryotic N-terminal methylation motif","COG2165","Type II secretory pathway, pseudopilin P"]
["hypothetical protein","aq_1439",1021935,1023788,null,"+",617,15606613]
["COG0747E, extracellular solute binding protein","aq_1441",1023795,1025549,null,"+",584,15606614,null,"COG0747","pfam00496","Bacterial extracellular solute-binding p","COG0747","ABC-type dipeptide transport system, per"]
["COG2199T,COG2200T,COG2202T,COG2203T, hypothetical protein","aq_1442",1025935,1029099,null,"+",1054,15606615,null,"COG3221","cd01948,cd01949,pfam08448,pfam08448","EAL domain. This domain is found in dive ; Diguanylate-cyclase (DGC) or GGDEF domai ; PAS fold. The PAS fold corresponds to th ; PAS fold. The PAS fold corresponds to th","COG2200,COG2199,COG2202,COG2202,COG0077","c-di-GMP phosphodiesterase class I (EAL  ; c-di-GMP synthetase (diguanylate cyclase ; FOG: PAS/PAC domain [Signal transduction ; FOG: PAS/PAC domain [Signal transduction ; Prephenate dehydratase [Amino acid trans"]
["COG2078S, hypothetical protein","aq_1444",1029091,1029678,null,"-",195,15606616,null,"COG2078","pfam01871","AMMECR1. This family consists of several","COG2078","Uncharacterized conserved protein [Funct"]
["COG2217P, cation transporter E1-E2 family ATPase","aq_1445",1029714,1031753,null,"-",679,15606617,null,"COG2608","pfam00122,pfam00702,pfam00403","E1-E2 ATPase. ","COG2217","Cation transport ATPase [Inorganic ion t"]
["hypothetical protein","aq_1446",1031810,1032367,null,"-",185,15606618,null,null,"pfam00509,pfam00509,pfam07672","Hemagglutinin. Hemagglutinin from influe ; Hemagglutinin. Hemagglutinin from influe ; Mycoplasma MFS transporter. These protei","COG1269","Archaeal/vacuolar-type H+-ATPase subunit"]
["COG1431J, hypothetical protein","aq_1447",1032379,1034499,null,"-",706,15606619,"PIWI domain containing protein","COG1431","cd04659,pfam04902","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Conserved region in Nab1. Nab1 and Nab2 ","COG1431","Argonaute homolog, implicated in RNA met"]
["COG1051F, 8-oxo-dGTPase domain-containing protein","aq_1449",1034504,1034923,null,"-",139,15606620,"8-oxo-dGTPase domain-containing protein","COG1051","pfam00293","NUDIX domain. ","COG1051","ADP-ribose pyrophosphatase [Nucleotide t"]
["COG0265O, periplasmic serine protease","aq_1450",1034952,1036313,null,"+",453,15606621,null,"COG0265","cd00987,pfam00089,cd00987","PDZ domain of tryspin-like serine protea ; Trypsin. ","COG0265,COG0265","Trypsin-like serine proteases, typically ; Trypsin-like serine proteases, typically"]
["COG0568K, RNA polymerase sigma factor RpoS","aq_1452",1036324,1037256,null,"+",310,15606622,null,"COG0568","pfam04542,pfam04545,pfam04539,pfam00140","Sigma-70 region 2. Region 2 of sigma-70  ; Sigma-70, region 4. Region 4 of sigma-70 ; Sigma-70 region 3. Region 3 forms a disc ; Sigma-70 factor, region 1.2. ","COG0568","DNA-directed RNA polymerase, sigma subun"]
["COG3287S, hypothetical protein","aq_1453",1037256,1038068,null,"+",270,15606623,null,"COG3287","pfam08495","FIST N domain. The FIST N domain is a no","COG3287","Uncharacterized conserved protein [Funct"]
["COG2199T, hypothetical protein","aq_1455",1038417,1039127,null,"+",236,15606624,null,"COG2199","pfam00990","GGDEF domain. This domain is found linke","COG2199","c-di-GMP synthetase (diguanylate cyclase"]
["COG0500QR, hypothetical protein","aq_1457",1038984,1039616,null,"-",210,15606625,null,"COG0500","pfam08241","Methyltransferase domain. Members of thi","COG2226","Methylase involved in ubiquinone/menaqui"]
["COG0404E, aminomethyltransferase (glycine cleavage system T protein)","aq_1458",1039761,1040666,null,"+",301,15606626,null,"COG0404","pfam01571,pfam08669","Aminomethyltransferase folate-binding do ; Glycine cleavage T-protein C-terminal ba","COG0404","Glycine cleavage system T protein (amino"]
["COG0675L, neutral protease","aq_1459",1040657,1042405,null,"-",582,15606627,null,"COG0675","pfam07282","Putative transposase DNA-binding domain.","COG0675,COG5141","Transposase and inactivated derivatives  ; PHD zinc finger-containing protein [Gene"]
["COG0730R, hypothetical protein","aq_1462",1042119,1043009,null,"+",296,15606628,null,"COG0730","pfam01925","Domain of unknown function DUF81. This i","COG0730","Predicted permeases [General function pr"]
["COG1187J, hypothetical protein","aq_1464",1043006,1043755,null,"+",249,15606629,null,"COG1187","cd02870,cd00165","Pseudouridine synthases  are responsible ; S4/Hsp/ tRNA synthetase RNA-binding doma","COG1187","16S rRNA uridine-516 pseudouridylate syn"]
[{"$nulls":4},"#",11498916,"Archaeoglobus_fulgidus","/am/ftp-genomes/Bacteria/Archaeoglobus_fulgidus/NC_000917.ptt"]
["COG0125F, thymidylate kinase, putative","AF1308",1167020,1167751,null,"-",243,11498906,null,"COG0125","pfam02223","Thymidylate kinase. ","COG0125","Thymidylate kinase [Nucleotide transport"]
["COG0170I, hypothetical protein","AF1309",1167583,1168218,null,"-",211,11498907,null,"COG0170","pfam01148","Cytidylyltransferase family. The members","COG0170","Dolichol kinase [Lipid metabolism]"]
["COG2801L, ISA0963-3 transposase","AF1310",1168304,1169203,null,"+",299,11498908,null,"COG2801","pfam00665,cd00569","Integrase core domain. Integrase mediate ; Helix-turn-helix domain of Hin and relat","COG2801","Transposase and inactivated derivatives "]
["COG1032C, oxygen-independent coproporphyrinogen III oxidase, putative","AF1311",1169270,1170133,null,"+",287,11498909,null,"COG1032","smart00729","Elongator protein 3, MiaB family, Radica","COG1032","Fe-S oxidoreductase [Energy production a"]
["COG2834M, hypothetical protein","AF1312",1170143,1171159,null,"-",338,11498910,null,"COG2834","pfam03888","MucB/RseB family. Members of this family","COG2834","Outer membrane lipoprotein-sorting prote"]
["COG2043S, hypothetical protein","AF1313",1171193,1171963,null,"+",256,11498911,null,"COG2043","pfam02596","Uncharacterised ArCR, COG2043. ","COG2043","Uncharacterized protein conserved in arc"]
["COG0446R, hypothetical protein","AF1314",1171950,1172597,null,"-",215,11498912,null,null,"pfam02254,cd00640","TrkA-N domain. This domain is found in a ; Tryptophan synthase beta superfamily (fo","COG0644,COG1941","Dehydrogenases (flavoproteins) [Energy p ; Coenzyme F420-reducing hydrogenase, gamm"]
["COG1804C, bile acid-inducible operon protein F (baiF-3)","AF1315",1172599,1173594,null,"-",331,11498913,null,"COG1804","pfam02515","CoA-transferase family III. CoA-transfer","COG1804","Predicted acyl-CoA transferases/carnitin"]
["COG0498E, threonine synthase","AF1316",1173643,1174833,null,"+",396,11498914,null,"COG0498","cd01563","Threonine synthase is a pyridoxal phosph","COG0498","Threonine synthase [Amino acid transport"]
["hypothetical protein","AF1317",1175333,1176355,null,"-",340,11498915,"???"]
["COG1431J, hypothetical protein","AF1318",1176343,1177626,null,"-",427,11498916,"PIWI domain containing protein","COG1431","cd02826","Piwi-like: PIWI domain. Domain found in ","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","AF1319",1178538,1179122,null,"+",194,11498917]
["COG0518F, GMP synthase subunit A","AF1320",1179147,1179698,null,"+",183,11498918,null,"COG0518","cd01742","Type 1 glutamine amidotransferase (GATas","COG0518","GMP synthase - Glutamine amidotransferas"]
["COG0037D, hypothetical protein","AF1321",1179699,1180562,null,"-",287,11498919,null,"COG0037","cd01993,pfam02132","This is a subfamily of Adenine nucleotid ; RecR protein. ","COG0037","tRNA(Ile)-lysidine synthase MesJ [Cell c"]
["COG0750M, hypothetical protein","AF1322",1180559,1182064,null,"-",501,11498920,null,"COG0750","cd06159,cd06159,cd00991,cd00987","Uncharacterized Archaeal homologs of Sit ; Uncharacterized Archaeal homologs of Sit ; PDZ domain of archaeal zinc metalloprota ; PDZ domain of tryspin-like serine protea","COG0750","Predicted membrane-associated Zn-depende"]
["COG0076E, group II decarboxylase","AF1323",1182042,1183508,null,"+",488,11498921,null,"COG0076","cd06450","DOPA decarboxylase family. This family b","COG0076","Glutamate decarboxylase and related PLP-"]
["COG1070G, carbohydrate kinase","AF1324",1183494,1185011,null,"-",505,11498922,null,"COG1070","pfam00370,pfam02782","FGGY family of carbohydrate kinases, N-t ; FGGY family of carbohydrate kinases, C-t","COG1070","Sugar (pentulose and hexulose) kinases ["]
["COG0477GEPR, multidrug resistance protein","AF1325",1185101,1186216,null,"+",371,11498923,null,"COG2814","cd06174","The Major Facilitator Superfamily (MFS) ","COG2814","Arabinose efflux permease [Carbohydrate "]
["COG0218R, GTP-binding protein","AF1326",1186175,1186768,null,"-",197,11498924,null,"COG0218","cd01876","The YihA (EngB) subfamily.  This subfami","COG0218","Predicted GTPase [General function predi"]
["hypothetical protein","AF1327",1186805,1186975,null,"-",56,11498925,null,null,"pfam03302","Giardia variant-specific surface protein"]
["COG0579R, glycerol-3-phosphate dehydrogenase (glpA)","AF1328",1187215,1188576,null,"+",453,11498926,null,"COG0579","pfam01266,pfam04324","FAD dependent oxidoreductase. This famil ; BFD-like [2Fe-2S] binding domain. The tw","COG0579,COG1251","Predicted dehydrogenase [General functio ; NAD(P)H-nitrite reductase [Energy produc"]
[{"$nulls":4},"#",56478414,"Aromatoleum_aromaticum_EbN1","/am/ftp-genomes/Bacteria/Aromatoleum_aromaticum_EbN1/NC_006513.ptt"]
["hypothetical protein","ebA5228",3102281,3102934,null,"+",217,56478404]
["COG1123R, putative ABC-type transporter","ebA5230",3102934,3103989,null,"+",351,56478405,null,"COG1106","cd00267,cd00267","ABC (ATP-binding cassette) transporter n ; ABC (ATP-binding cassette) transporter n","COG4694,COG3839","Uncharacterized protein conserved in bac ; ABC-type sugar transport systems, ATPase"]
["hypothetical protein","ebA5234",3103986,3104801,null,"+",271,56478406]
["COG4637R, hypothetical protein","ebA5236",3104853,3105023,null,"+",56,56478407,null,"COG4637","pfam02463","RecF/RecN/SMC N terminal domain. This do","COG4637","Predicted ATPase [General function predi"]
["hypothetical protein","ebA5237",3105014,3105130,null,"+",38,56478408]
["hypothetical protein","ebA5238",3105130,3105423,null,"+",97,56478409]
["hypothetical protein","ebB184",3105442,3105879,null,"+",145,56478410,null,null,"smart00524","Domain B in dwarfin family proteins; "]
["COG4584L, transposase","ebA5241",3106290,3107849,null,"+",519,56478411,null,"COG4584","pfam00665","Integrase core domain. Integrase mediate","COG4584,COG4584","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
["COG1484L, transposition helper protein","ebA5242",3107872,3108606,null,"+",244,56478412,null,"COG1484","pfam01695,pfam08483","IstB-like ATP binding protein. This prot ; IstB-like ATP binding N-terminal. This b","COG1484","DNA replication protein [DNA replication"]
["hypothetical protein","ebA5243",3108603,3108740,null,"+",45,56478413]
["hypothetical protein","ebA5244",3108846,3111029,null,"+",727,56478414,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG1924","Argonaute homolog, implicated in RNA met ; Activator of 2-hydroxyglutaryl-CoA dehyd"]
["hypothetical protein","ebA5249",3111063,3113681,null,"+",872,56478415,"PglZ domain",null,"pfam08665","PglZ domain. This family is a member of ","COG1461","Predicted kinase related to dihydroxyace"]
["COG4930O, putative ATP-dependent Lon protease","ebA5250",3113638,3115719,null,"+",693,56478416,null,"COG4930","pfam05362,PHA01747","Lon protease (S16) C-terminal proteolyti ; putative ATP-dependent protease","COG4930","Predicted ATP-dependent Lon-type proteas"]
["COG0220R, S-adenosylmethionine-dependent tRNA (guanine-N(7)-)-methyltransferase","ebA5251",3115827,3116630,null,"+",267,56478417,null,"COG0220","pfam02390","Putative methyltransferase. This is a fa","COG0220","Predicted S-adenosylmethionine-dependent"]
["COG3318R, hypothetical protein","ebA5255",3116644,3117372,null,"+",242,56478418,null,"COG3318","pfam02810","SEC-C motif. The SEC-C motif found in th","COG3318","Predicted metal-binding protein related "]
["COG4360F, Ap4A phosphorylase II","ebA5257",3117509,3118384,null,"-",291,56478419,null,"COG4360","pfam09830,cd01275","ATP adenylyltransferase (5',5'''-P-1,P-4 ; FHIT (fragile histidine family): FHIT pr","COG4360","ATP adenylyltransferase (5',5'''-P-1,P-4"]
["hypothetical protein","ebB185",3118448,3118759,null,"-",103,56478420,null,null,"pfam01695","IstB-like ATP binding protein. This prot"]
["COG1226P, KTN NAD-binding domain-containing protein","ebA5259",3118722,3120461,null,"-",579,56478421,null,"COG1226","pfam02254,pfam02254,pfam07885,pfam02080","TrkA-N domain. This domain is found in a ; TrkA-N domain. This domain is found in a ; Ion channel. This family includes the tw ; TrkA-C domain. This domain is often foun","COG0569,COG0569,COG2211","K+ transport systems, NAD-binding compon ; K+ transport systems, NAD-binding compon ; Na+/melibiose symporter and related tran"]
["COG1105G, hypothetical protein","ebB186",3120478,3120861,null,"-",127,56478422]
["COG3012S, hypothetical protein","ebA5263",3120972,3121367,null,"-",131,56478423,null,"COG3012","pfam02810,pfam10590","SEC-C motif. The SEC-C motif found in th ; Pyridoxine 5'-phosphate oxidase C-termin","COG3012","Uncharacterized protein conserved in bac"]
["COG1048C, aconitate hydratase","ebA5264",3121396,3124113,null,"-",905,56478424,null,"COG1048","cd01586,cd01580","Aconitase A catalytic domain. This is th ; Aconitase A swivel domain. This is the m","COG1048","Aconitase A [Energy production and conve"]
[{"$nulls":4},"#",182676905,"Beijerinckia_indica_ATCC_9039","/am/ftp-genomes/Bacteria/Beijerinckia_indica_ATCC_9039/NC_010580.ptt"]
["hypothetical protein","Bind_3748",62195,63139,null,"-",314,182676895,null,null,"PHA02415,cd00188","DNA primase domain-containing protein"]
["hypothetical protein","Bind_3749",63136,63528,null,"-",130,182676896,null,null,"pfam09798","DNA damage checkpoint protein. This is a","COG5290","IkappaB kinase complex, IKAP component ["]
["COG3831S, hypothetical protein","Bind_3750",63770,64204,null,"+",144,182676897,null,null,"pfam05406","WGR domain. This domain is found in a va","COG3831","Uncharacterized conserved protein [Funct"]
["COG1974KT, peptidase S24/S26 domain-containing protein","Bind_3751",64255,64704,null,"+",149,182676898,null,"COG1974","cd06529,pfam02689","Peptidase S24 LexA-like proteins are inv ; Helicase. This family consists of Helica","COG1974","SOS-response transcriptional repressors "]
["COG0389L, DNA-directed DNA polymerase","Bind_3752",64704,65966,null,"+",420,182676899,null,"COG0389","cd01700","Pol V was discovered in Escherichia coli","COG0389","Nucleotidyltransferase/DNA polymerase in"]
["hypothetical protein","Bind_3753",66033,66743,null,"-",236,182676900,null,null,"pfam05557","Mitotic checkpoint protein. This family ","COG5374","Uncharacterized conserved protein [Funct"]
["COG1192D, hypothetical protein","Bind_3754",66740,67384,null,"-",214,182676901,null,"COG1192","pfam01656,CHL00072","CobQ/CobB/MinD/ParA nucleotide binding d ; photochlorophyllide reductase subunit L","COG1192","ATPases involved in chromosome partition"]
["COG3077L, addiction module antitoxin","Bind_3758",69815,70114,null,"+",99,182676902,null,"COG3077","pfam04221","RelB antitoxin. RelE and RelB form a tox","COG3077","DNA-damage-inducible protein J [DNA repl"]
["COG3668R, plasmid stabilization system protein","Bind_3759",70152,70391,null,"+",79,182676903,null,"COG3668","pfam05016","Plasmid stabilisation system protein. Me","COG3668","Plasmid stabilization system protein [Ge"]
["COG0826O, hypothetical protein","Bind_3760",70588,70944,null,"+",118,182676904]
["hypothetical protein","Bind_3762",71869,73326,null,"-",485,182676905,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3321","Polyketide synthase modules and related "]
["hypothetical protein","Bind_3763",73316,74650,null,"-",444,182676906,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain",null,"cd06114","Escherichia coli (Ec) citrate synthase ("]
["COG0187L, hypothetical protein","Bind_3764",74987,75784,null,"+",265,182676907]
["COG1204R,COG4581L, helicase domain-containing protein","Bind_3765",75777,79088,null,"+",1103,182676908,null,"COG4581","smart00487,smart00490,cd02771,cd01563","DEAD-like helicases superfamily; ","COG4581","Superfamily II RNA helicase [DNA replica"]
["hypothetical protein","Bind_3766",79470,79715,null,"-",81,182676909]
["COG1573L, hypothetical protein","Bind_3767",79777,80442,null,"-",221,182676910,null,null,"pfam03167","Uracil DNA glycosylase superfamily. "]
["COG1694R, hypothetical protein","Bind_3768",80439,81545,null,"-",368,182676911,null,"COG1694","pfam03819","MazG nucleotide pyrophosphohydrolase dom"]
["hypothetical protein","Bind_3769",81565,82203,null,"-",212,182676912,null,null,"pfam08584","Ribonuclease P 40kDa (Rpp40) subunit. Th"]
["hypothetical protein","Bind_3770",82203,82670,null,"-",155,182676913,null,null,"pfam08937","MTH538 TIR-like domain (DUF1863). This d"]
["hypothetical protein","Bind_3771",82979,84136,null,"+",385,182676914,null,null,"smart00255,cd01563","Toll - interleukin 1 - resistance; "]
["hypothetical protein","Bind_3772",84124,84792,null,"+",222,182676915,{"$nulls":4},"COG1018","Flavodoxin reductases (ferredoxin-NADPH "]
[{"$nulls":4},"#",146337912,"Bradyrhizobium_ORS278","/am/ftp-genomes/Bacteria/Bradyrhizobium_ORS278/NC_009445.ptt"]
["COG0352H, putative thiamine-phosphate diphosphorylase","BRADO0790",832772,833137,null,"+",121,146337902,null,"COG0352","pfam02581","Thiamine monophosphate synthase/TENI. Th","COG0352","Thiamine monophosphate synthase [Coenzym"]
["thiamine-phosphate pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase) (thiamine-phosphate synthase) (fragment)","BRADO0791",833151,833423,null,"+",90,146337903,null,"COG0352","cd00564","Thiamine monophosphate synthase (TMP syn","COG0352","Thiamine monophosphate synthase [Coenzym"]
["COG2225C, hypothetical protein","BRADO0792",833507,835609,null,"-",700,146337904,null,null,"cd05394,pfam06519,cd00728","RASA2 (or GAP1(m)) is a member of the GA ; TolA protein. This family consists of se ; Malate synthase G (MSG), monomeric enzym"]
["hypothetical protein","BRADO0793",835631,836512,null,"-",293,146337905]
["hypothetical protein","BRADO0794",836911,837531,null,"-",206,146337906,null,null,"cd01251","Centaurin alpha Pleckstrin homology (PH)","COG3904","Predicted periplasmic protein [Function "]
["hypothetical protein","BRADO0795",838044,838274,null,"+",76,146337907,null,null,"cd00707","Pancreatic lipase-like enzymes.  Lipases"]
["COG0317TK,COG0507L, conjugal transfer relaxase TraA","BRADO0796",838281,841292,null,"-",1003,146337908,null,"COG0507","pfam03389,pfam01443,pfam01443","MobA/MobL family. This family includes o ; Viral (Superfamily 1) RNA helicase. Heli ; Viral (Superfamily 1) RNA helicase. Heli","COG0507,COG2719","ATP-dependent exoDNAse (exonuclease V),  ; Uncharacterized conserved protein [Funct"]
["putative conjugal transfer protein, traC","BRADO0797",841463,841789,null,"+",108,146337909,null,null,"pfam06412","Conjugal transfer protein TraD. This fam"]
["hypothetical protein","BRADO0798",841737,841832,null,"-",31,146337910]
["COG0560E, hypothetical protein","BRADO0799",842357,844099,null,"+",580,146337911,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846,COG2135","NAD-dependent protein deacetylases, SIR2 ; Uncharacterized conserved protein [Funct"]
["hypothetical protein","BRADO0800",844096,845514,null,"+",472,146337912,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","BRADO0801",845774,846985,null,"-",403,146337913,{"$nulls":4},"COG1410","Methionine synthase I, cobalamin-binding"]
["hypothetical protein","BRADO0802",847472,847690,null,"+",72,146337914]
["hypothetical protein","BRADO0803",847724,847987,null,"+",87,146337915]
["hypothetical protein","BRADO0804",848048,848824,null,"+",258,146337916]
["hypothetical protein","BRADO0805",848988,849896,null,"+",302,146337917]
["COG1404O, putative subtilisin-like serine protease","BRADO0807",850867,852099,null,"+",410,146337918,null,"COG1404","pfam00082","Subtilase family. Subtilases are a famil","COG1404","Subtilisin-like serine proteases [Posttr"]
["putative trypsin-like serine protease","BRADO0808",852784,853998,null,"+",404,146337919,null,null,"cd04736","Mandelate dehydrogenase (MDH)-like FMN-b"]
["hypothetical protein","BRADO0809",853995,857090,null,"+",1031,146337920,null,null,"pfam04683,pfam06207","Adhesion regulating molecule conserved r ; Protein of unknown function (DUF1002). T","COG5022","Myosin heavy chain [Cytoskeleton]"]
["hypothetical protein","BRADO0810",857060,857209,null,"-",49,146337921]
["hypothetical protein","BRADO0811",857228,859474,null,"+",748,146337922,null,null,"pfam02482,pfam05954","Sigma 54 modulation protein / S30EA ribo ; Phage late control gene D protein (GPD)."]
[{"$nulls":4},"#",91783256,"Burkholderia_xenovorans_LB400","/am/ftp-genomes/Bacteria/Burkholderia_xenovorans_LB400/NC_007951.ptt"]
["COG0071O, putative low molecular weight heat shock protein, Hsp20-related","Bxe_A2579",2083236,2083649,null,"+",137,91783246,null,"COG0071","cd06464","Alpha-crystallin domain (ACD) of alpha-c","COG0071","Molecular chaperone (small heat shock pr"]
["COG0071O, putative heat shock protein","Bxe_A2578",2083740,2084297,null,"+",185,91783247,null,"COG0071","cd06464","Alpha-crystallin domain (ACD) of alpha-c","COG0071","Molecular chaperone (small heat shock pr"]
["hypothetical protein","Bxe_A2577",2084507,2085019,null,"+",170,91783248,null,null,"pfam10687","Protein of unknown function (DUF2495). M","COG3431","Predicted membrane protein [Function unk"]
["hypothetical protein","Bxe_A2576",2085285,2085791,null,"-",168,91783249,null,null,"pfam07055","Short-chain alcohol dehydrogenase. This "]
["hypothetical protein","Bxe_A2575",2086226,2086690,null,"+",154,91783250,{"$nulls":4},"COG2323","Predicted membrane protein [Function unk"]
["hypothetical protein","Bxe_A2574",2086700,2087392,null,"+",230,91783251,null,null,"pfam01656","CobQ/CobB/MinD/ParA nucleotide binding d","COG0489","ATPases involved in chromosome partition"]
["hypothetical protein","Bxe_A2573",2087385,2088158,null,"+",257,91783252,null,null,"cd03344","GroEL_like type I chaperonin. Chaperonin","COG3287","Uncharacterized conserved protein [Funct"]
["COG1475K, ParB family protein","Bxe_A2572",2088389,2090686,null,"-",765,91783253,null,"COG1475","pfam02195,pfam04111,pfam10446","ParB-like nuclease domain. ","COG1475,COG3096,COG4547","Stage 0 sporulation protein J (antagonis ; Uncharacterized protein involved in chro ; Cobalamin biosynthesis protein CobT (nic"]
["COG0556L, putative F plasmid gene 32-like protein","Bxe_A2571",2090759,2091592,null,"-",277,91783254,null,null,"pfam06067","Domain of unknown function (DUF932). Fam","COG1759","5-formaminoimidazole-4-carboxamide-1-bet"]
["hypothetical protein","Bxe_A2570",2092042,2093670,null,"+",542,91783255,null,null,"cd05155","Uncharacterized bacterial proteins with "]
["hypothetical protein","Bxe_A2569",2093873,2097064,null,"-",1063,91783256,"PIWI domain containing protein fused to predicted Sir2 family endonuclease and uncharacterized APAZ domain",null,"cd04659,cd00296","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","COG0846","NAD-dependent protein deacetylases, SIR2"]
["hypothetical protein","Bxe_A2568",2097539,2097829,null,"+",96,91783257]
["COG1396K, XRE family transcriptional regulator","Bxe_A2567",2097831,2098151,null,"+",106,91783258,null,"COG1396","cd00093","Helix-turn-helix XRE-family like protein","COG3093","Plasmid maintenance system antidote prot"]
["COG2856E, hypothetical protein","Bxe_A2566",2098148,2099005,null,"+",285,91783259,null,"COG2856","pfam06114","Domain of unknown function (DUF955). Fam","COG2856","Predicted Zn peptidase [Amino acid trans"]
["COG0207F, hypothetical protein","Bxe_A2565",2099002,2099796,null,"+",264,91783260,null,null,"MTH00020","NADH dehydrogenase subunit 5; Reviewed"]
["hypothetical protein","Bxe_A2564",2099811,2100884,null,"+",357,91783261,null,null,"cd00431","Cysteine hydrolases; This family contain"]
["COG1694R, protein pyrophosphatase","Bxe_A2563",2100898,2101818,null,"+",306,91783262,null,"COG1694","pfam03819","MazG nucleotide pyrophosphohydrolase dom","COG1694,COG0421","Predicted pyrophosphatase [General funct ; Spermidine synthase [Amino acid transpor"]
["hypothetical protein","Bxe_A2562",2101864,2102202,null,"+",112,91783263]
["COG3593L, ATP-dependent endonuclease","Bxe_A2561",2102514,2104355,null,"+",613,91783264,null,"COG1195","cd01026,cd03242,cd03263","TOPRIM_OLD: topoisomerase-primase (TOPRI ; RecF is a recombinational DNA repair ATP ; The ABCA subfamily mediates the transpor","COG3593","Predicted ATP-dependent endonuclease of "]
["COG0210L, putative ATP-dependent DNA helicase, Rep","Bxe_A2560",2104394,2105956,null,"+",520,91783265,null,"COG0210","pfam00580","UvrD/REP helicase. The Rep family helica","COG0210","Superfamily I DNA and RNA helicases [DNA"]
["COG4584L, putative transposase","Bxe_A2559",2106075,2107589,null,"+",504,91783266,null,"COG4584","pfam00665","Integrase core domain. Integrase mediate","COG3963,COG4584","Phospholipid N-methyltransferase [Lipid  ; Transposase and inactivated derivatives "]
[{"$nulls":4},"#",192359261,"Cellvibrio_japonicus_Ueda107","/am/ftp-genomes/Bacteria/Cellvibrio_japonicus_Ueda107/NC_010995.ptt"]
["COG3206M,COG3944M, putative chain length determinant protein EpsF","CJA_0623",757284,758636,null,"-",450,192359319,null,"COG3206","pfam02706,pfam02463,pfam06325","Chain length determinant protein. This f ; RecF/RecN/SMC N terminal domain. This do ; Ribosomal protein L11 methyltransferase ","COG3206","Uncharacterized protein involved in exop"]
["COG1596M, EpsE","CJA_0624",758682,759497,null,"-",271,192362006,null,"COG1596","pfam02563,pfam10531,pfam10531","Polysaccharide biosynthesis/export prote ; SLBB domain. ","COG1596","Periplasmic protein involved in polysacc"]
["hypothetical protein","CJA_0625",759521,759631,null,"+",36,192360694]
["COG0128E, 3-phosphoshikimate 1-carboxyvinyltransferase","CJA_0627",760137,761423,null,"+",428,192361288,null,"COG0128","cd01556","EPSP synthase domain. 3-phosphoshikimate","COG0128","5-enolpyruvylshikimate-3-phosphate synth"]
["COG0824R, thioesterase family protein domain protein","CJA_0628",761423,761842,null,"+",139,192362303,null,"COG0824","cd00586","4-hydroxybenzoyl-CoA thioesterase (4HBT)","COG0824","Predicted thioesterase [General function"]
["PEP-CTERM putative exosortase interaction domain protein","CJA_0629",762136,762678,null,"+",180,192358953,null,null,"pfam07589","PEP-CTERM motif. This motif has been ide"]
["COG2095U, hypothetical protein","CJA_0630",762865,763536,null,"-",223,192360159,null,"COG2095","pfam01914","MarC family integral membrane protein. I","COG2095","Multiple antibiotic transporter [Intrace"]
["COG3187O, Domain of unknown function (306) family","CJA_0631",763689,764576,null,"-",295,192361789,null,"COG3187","pfam03724","META domain. Small domain family found i","COG3187","Heat shock protein [Posttranslational mo"]
["COG0210L, putative DNA helicase II","CJA_0632",764567,766402,null,"+",611,192362483,null,"COG0556","pfam00580,pfam08378,pfam00580","UvrD/REP helicase. The Rep family helica ; Nuclease-related domain. The nuclease-re ; UvrD/REP helicase. The Rep family helica","COG3972","Superfamily I DNA and RNA helicases [Gen"]
["COG3385L, ISCja2, transposase","CJA_0634",767378,768529,null,"+",383,192360303,null,"COG3385","pfam01609","Transposase DDE domain. Transposase prot","COG3385","FOG: Transposase and inactivated derivat"]
["Piwi domain protein","CJA_0633",768417,769673,null,"-",418,192359261,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG0621J, hypothetical protein","CJA_0635",769670,771541,null,"-",623,192360229,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd00296,cd06417,PHA02090","SIR2 superfamily of proteins includes si ; LysA is a cell wall endolysin produced b ; hypothetical protein","COG2610","H+/gluconate symporter and related perme"]
["COG0732V, type I restriction-modification system, S subunit","CJA_0636",771596,773983,null,"-",795,192361516,null,"COG0732","pfam01420,pfam01420,cd03268,pfam05947","Type I restriction modification DNA spec ; Type I restriction modification DNA spec ; The BcrA subfamily represents ABC transp ; Bacterial protein of unknown function (D","COG0732,COG0732","Restriction endonuclease S subunits [Def ; Restriction endonuclease S subunits [Def"]
["COG3943R, RhuM-like protein","CJA_0637",773976,775034,null,"-",352,192362336,null,"COG3943",null,null,"COG3943","Virulence protein [General function pred"]
["COG0286V, type I restriction-modification system, M subunit","CJA_0638",775031,776503,null,"-",490,192360754,null,"COG0286","pfam02384","N-6 DNA Methylase. Restriction-modificat","COG0286","Type I restriction-modification system m"]
["COG4096V, type I restriction-modification system, R subunit","CJA_0639",776516,778906,null,"-",796,192359896,null,"COG4096","pfam08463,pfam04851,pfam04313,cd00079","EcoEI R protein C-terminal. The restrict ; Type III restriction enzyme, res subunit ; Type I restriction enzyme R protein N te ; Helicase superfamily c-terminal domain; ","COG4096","Type I site-specific restriction-modific"]
["COG1396K, hypothetical protein","CJA_0640",778979,779236,null,"-",85,192362493,null,null,"cd00093","Helix-turn-helix XRE-family like protein","COG1396","Predicted transcriptional regulators [Tr"]
["COG0012J, GTP-binding protein YchF","CJA_0641",779435,780526,null,"-",363,192362469,null,"COG0012","cd01900","YchF subfamily.  YchF is a member of the","COG0012","Predicted GTPase, probable translation f"]
["COG0193J, peptidyl-tRNA hydrolase","CJA_0642",780594,781337,null,"-",247,192361428,null,"COG0193","cd00462","Peptidyl-tRNA hydrolase (PTH) is a monom","COG0193","Peptidyl-tRNA hydrolase [Translation, ri"]
["COG1825J, 50S ribosomal protein L25/general stress protein Ctc","CJA_0643",781312,781923,null,"-",203,192359843,null,"COG1825","cd00495","Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5","COG1825","Ribosomal protein L25 (general stress pr"]
["COG0462FE, ribose-phosphate pyrophosphokinase","CJA_0644",782022,782963,null,"-",313,192358855,null,"COG0462","pfam00156","Phosphoribosyl transferase domain. This ","COG0462","Phosphoribosylpyrophosphate synthetase ["]
[{"$nulls":4},"#",189499316,"Chlorobium_phaeobacteroides_BS1","/am/ftp-genomes/Bacteria/Chlorobium_phaeobacteroides_BS1/NC_010831.ptt"]
["COG1013C, 2-oxoglutarate ferredoxin oxidoreductase subunit beta","Cphamn1_0326",328308,329336,null,"-",342,189499306,null,"COG1013","cd03375","Thiamine pyrophosphate (TPP family), 2-o","COG1013","Pyruvate:ferredoxin oxidoreductase and r"]
["COG0674C,COG1014C, pyruvate flavodoxin/ferredoxin oxidoreductase domain protein","Cphamn1_0327",329340,331283,null,"-",647,189499307,null,"COG1014","pfam01855,pfam01558","Pyruvate flavodoxin/ferredoxin oxidoredu ; Pyruvate ferredoxin/flavodoxin oxidoredu","COG0674,COG1014","Pyruvate:ferredoxin oxidoreductase and r ; Pyruvate:ferredoxin oxidoreductase and r"]
["hypothetical protein","Cphamn1_0328",331415,331684,null,"-",89,189499308]
["hypothetical protein","Cphamn1_0329",331897,332565,null,"-",222,189499309,null,null,"cd03800","This family is most closely related to t"]
["COG0013J, alanyl-tRNA synthetase","Cphamn1_0330",332767,335427,null,"+",886,189499310,null,"COG0013","pfam01411,pfam07973,pfam02272,pfam09474","tRNA synthetases class II (A). Other tRN ; Threonyl and Alanyl tRNA synthetase seco ; DHHA1 domain. This domain is often found ; Type III secretion system YscX (type_III","COG0013","Alanyl-tRNA synthetase [Translation, rib"]
["COG1146C, 4Fe-4S ferredoxin iron-sulfur binding domain protein","Cphamn1_0331",335440,335934,null,"+",164,189499311,null,null,"PHA00458","single-stranded DNA-binding protein","COG1143","Formate hydrogenlyase subunit 6/NADH:ubi"]
["COG1028IQR, short-chain dehydrogenase/reductase SDR","Cphamn1_0332",336186,336992,null,"-",268,189499312,null,null,"pfam00106","short chain dehydrogenase. This family c","COG1028","Dehydrogenases with different specificit"]
["COG0286V, N-6 DNA methylase","Cphamn1_0333",337284,338927,null,"+",547,189499313,null,"COG0286","pfam02384","N-6 DNA Methylase. Restriction-modificat","COG0286","Type I restriction-modification system m"]
["COG0732V, restriction modification system DNA specificity domain","Cphamn1_0334",338924,340216,null,"+",430,189499314,null,"COG0732","pfam01420,pfam01420","Type I restriction modification DNA spec ; Type I restriction modification DNA spec","COG0732","Restriction endonuclease S subunits [Def"]
["COG0568K, hypothetical protein","Cphamn1_0335",340213,341988,null,"+",591,189499315,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd00296","SIR2 superfamily of proteins includes si","COG0846,COG4239","NAD-dependent protein deacetylases, SIR2 ; ABC-type uncharacterized transport syste"]
["Piwi domain protein","Cphamn1_0336",341981,343405,null,"+",474,189499316,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG0610V,COG1943L, type I site-specific deoxyribonuclease, HsdR family","Cphamn1_0337",343420,347457,null,"+",1345,189499317,null,"COG0610","pfam04851,pfam07605,pfam04313,pfam10228","Type III restriction enzyme, res subunit ; Protein of unknown function (DUF1568). T ; Type I restriction enzyme R protein N te ; Uncharacterised conserved protein (DUF22","COG0610,COG0610,COG1943,COG3321","Type I site-specific restriction-modific ; Type I site-specific restriction-modific ; Transposase and inactivated derivatives  ; Polyketide synthase modules and related "]
["COG1451R, protein of unknown function DUF45","Cphamn1_0338",347461,347769,null,"+",102,189499318,null,"COG1451","pfam01863","Protein of unknown function DUF45. This ","COG1451","Predicted metal-dependent hydrolase [Gen"]
["transcriptional regulator, XRE family","Cphamn1_0339",348205,348552,null,"+",115,189499319,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG1426","Predicted transcriptional regulator cont"]
["COG0560E,COG3830T, phosphoserine phosphatase SerB","Cphamn1_0341",350412,351650,null,"-",412,189499320,null,"COG3830","cd04870,cd04871,pfam00702","The ACT_PSP_1 CD includes the first of t ; The ACT_PSP_2 CD includes the second of  ; haloacid dehalogenase-like hydrolase. Th","COG0560,COG3830","Phosphoserine phosphatase [Amino acid tr ; ACT domain-containing protein [Signal tr"]
["COG0518F,COG0519F, GMP synthase","Cphamn1_0342",351647,353191,null,"-",514,189499321,null,"COG0518","cd01997,cd01742","The C-terminal domain of GMP synthetase. ; Type 1 glutamine amidotransferase (GATas","COG0519,COG0518","GMP synthase, PP-ATPase domain/subunit [ ; GMP synthase - Glutamine amidotransferas"]
["COG5009M, penicillin-binding protein, 1A family","Cphamn1_0343",353217,355541,null,"-",774,189499322,null,"COG5009","pfam00912,pfam00905","Transglycosylase. The penicillin-binding ; Penicillin binding protein transpeptidas","COG5009","Membrane carboxypeptidase/penicillin-bin"]
["COG0596R, alpha/beta hydrolase fold","Cphamn1_0344",355538,356464,null,"-",308,189499323,null,"COG0596","pfam00561","alpha/beta hydrolase fold. This catalyti","COG0596","Predicted hydrolases or acyltransferases"]
["COG4978KT, transcription activator effector binding","Cphamn1_0345",356872,357342,null,"+",156,189499324,null,"COG4978","pfam06445","Bacterial transcription activator, effec","COG4978","Transcriptional regulator, effector-bind"]
["COG1233Q, amine oxidase","Cphamn1_0346",357617,359101,null,"+",494,189499325,null,"COG1233","pfam01593","Flavin containing amine oxidoreductase. ","COG1233","Phytoene dehydrogenase and related prote"]
["COG4277R, hypothetical protein","Cphamn1_0347",359303,360565,null,"+",420,189499326,null,"COG4277","pfam04055,pfam07149","Radical SAM superfamily. Radical SAM pro ; Pes-10. This family consists of several ","COG4277","Predicted DNA-binding protein with the H"]
[{"$nulls":4},"#",86606806,"Cyanobacteria_bacterium_Yellowstone_A-Prime","/am/ftp-genomes/Bacteria/Cyanobacteria_bacterium_Yellowstone_A-Prime/NC_007775.ptt"]
["COG0840NT, putative methyl-accepting chemotaxis protein, truncation","CYA_2156",2169520,2170581,null,"-",353,86606796,null,"COG0840","smart00283,pfam01230","Methyl-accepting chemotaxis-like domains ; HIT domain. ","COG0840","Methyl-accepting chemotaxis protein [Cel"]
["COG0675L, ISSoc1, transposase","CYA_2158",2170715,2171908,null,"+",397,86606797,null,"COG0675","pfam07282,pfam01385","Putative transposase DNA-binding domain. ; Probable transposase. This family includ","COG0675","Transposase and inactivated derivatives "]
["hypothetical protein","CYA_2157",2171905,2172813,null,"-",302,86606798,null,"COG2203","pfam01590","GAF domain. Domain present in phytochrom","COG0610","Type I site-specific restriction-modific"]
["hypothetical protein","CYA_2159",2172824,2173066,null,"-",80,86606799]
["COG0835NT, CheW domain-containing protein","CYA_2160",2173121,2173669,null,"-",182,86606800,null,"COG0835","pfam01584","CheW-like domain. CheW proteins are part","COG0835","Chemotaxis signal transduction protein ["]
["COG0784T, response regulator","CYA_2161",2173777,2174151,null,"-",124,86606801,null,null,"smart00448","cheY-homologous receiver domain; CheY re","COG0745","Response regulators consisting of a CheY"]
["COG0784T, response regulator","CYA_2162",2174199,2175443,null,"-",414,86606802,null,null,"pfam00072,PHA01082","Response regulator receiver domain. This ; putative transcription regulator","COG3706","Response regulator containing a CheY-lik"]
["COG0494LR, NUDIX family hydrolase","CYA_2163",2175829,2176308,null,"-",159,86606803,null,"COG0494","cd03428","Diadenosine tetraphosphate (Ap4A) hydrol","COG1051","ADP-ribose pyrophosphatase [Nucleotide t"]
["hypothetical protein","CYA_2164",2176315,2177547,null,"-",410,86606804,{"$nulls":4},"COG3026","Negative regulator of sigma E activity ["]
["hypothetical protein","CYA_2165",2177602,2177802,null,"-",66,86606805]
["COG1431J, piwi domain-containing protein","CYA_2166",2177856,2180051,null,"-",731,86606806,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","CYA_2167",2180122,2180589,null,"-",155,86606807,null,null,"pfam05473","UL45 protein. This family consists sever"]
["putative lipoprotein","CYA_2168",2180637,2181737,null,"-",366,86606808]
["COG1372L, ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining","CYA_2169",2181900,2185367,null,"-",1155,86606809,null,"COG1372","cd01676,cd01676,smart00306,smart00305","RNR, class II. Ribonucleotide reductase  ; RNR, class II. Ribonucleotide reductase  ; Hint (Hedgehog/Intein) domain N-terminal ; Hint (Hedgehog/Intein) domain C-terminal","COG1372,COG0209,COG0788","Intein/homing endonuclease [DNA replicat ; Ribonucleotide reductase, alpha subunit  ; Formyltetrahydrofolate hydrolase [Nucleo"]
["COG0517R,COG1994R, M50B family peptidase","CYA_2170",2185700,2186890,null,"+",396,86606810,null,"COG1994","cd06164,cd04801","SpoIVFB Site-2 protease (S2P), a zinc me ; This cd contains two tandem repeats of t","COG1994,COG2524","Zn-dependent proteases [General function ; Predicted transcriptional regulator, con"]
["COG0612R, M16B family peptidase","CYA_2171",2187005,2188312,null,"+",435,86606811,null,"COG0612","pfam05193,pfam00675","Peptidase M16 inactive domain. Peptidase ; Insulinase (Peptidase family M16). ","COG0612","Predicted Zn-dependent peptidases [Gener"]
["COG0612R, M16 family peptidase","CYA_2172",2188312,2189625,null,"+",437,86606812,null,"COG0612","pfam05193,pfam00675,cd03681","Peptidase M16 inactive domain. Peptidase ; Insulinase (Peptidase family M16). ","COG0612","Predicted Zn-dependent peptidases [Gener"]
["COG1811R, hypothetical protein","CYA_2173",2189855,2190574,null,"-",239,86606813,null,"COG1811","pfam04474","Protein of unknown function (DUF554). Fa","COG1811","Uncharacterized membrane protein, possib"]
["COG0454KR, acetyltransferase","CYA_2174",2190749,2191273,null,"+",174,86606814,null,"COG0454","pfam00583","Acetyltransferase (GNAT) family. This fa","COG0456","Acetyltransferases [General function pre"]
["COG1075R, hypothetical protein","CYA_2175",2191277,2191987,null,"+",236,86606815,null,"COG1075","pfam06028","Alpha/beta hydrolase of unknown function","COG1075","Predicted acetyltransferases and hydrola"]
["Thf1-like protein","CYA_2176",2191994,2192713,null,"-",239,86606816,null,null,"cd05580,pfam02463","STKc_PKA: Serine/Threonine Kinases (STKs ; RecF/RecN/SMC N terminal domain. This do","COG1500","Predicted exosome subunit [Translation, "]
[{"$nulls":4},"#",86610170,"Cyanobacteria_bacterium_Yellowstone_B-Prime","/am/ftp-genomes/Bacteria/Cyanobacteria_bacterium_Yellowstone_B-Prime/NC_007776.ptt"]
["COG0728R, integral membrane protein MviN","CYB_2733",2828630,2830276,null,"-",548,86610160,null,"COG0728","pfam03023","MviN-like protein. Deletion of the mviN ","COG0728","Uncharacterized membrane protein, putati"]
["COG0675L, ISSoc1, transposase","CYB_2735",2830276,2831565,null,"-",429,86610161,null,"COG0675","pfam07282,pfam01385","Putative transposase DNA-binding domain. ; Probable transposase. This family includ","COG0675","Transposase and inactivated derivatives "]
["COG1413C, phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit","CYB_2736",2831818,2832648,null,"-",276,86610162,null,"COG1413","cd00020","Armadillo/beta-catenin-like repeats. An ","COG1413","FOG: HEAT repeat [Energy production and "]
["phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod","CYB_2737",2832682,2833539,null,"-",285,86610163,null,null,"pfam00427,pfam01383","Phycobilisome Linker polypeptide. ","COG3195","Uncharacterized protein conserved in bac"]
["hypothetical protein","CYB_2739",2833868,2834017,null,"+",49,86610164]
["phycocyanin, alpha subunit","CYB_2738",2834010,2834492,null,"-",160,86610165,null,null,"CHL00170","phycocyanin alpha subunit; Reviewed","COG0653,COG3025","Preprotein translocase subunit SecA (ATP ; Uncharacterized conserved protein [Funct"]
["phycocyanin, beta subunit","CYB_2740",2834686,2835204,null,"-",172,86610166,null,null,"CHL00171","phycocyanin beta subunit; Reviewed"]
["CpeT protein","CYB_2741",2835853,2836452,null,"+",199,86610167,null,null,"pfam06206","Protein of unknown function (DUF1001). T"]
["hypothetical protein","CYB_2743",2836654,2837769,null,"+",371,86610168]
["hypothetical protein","CYB_2742",2837761,2837976,null,"-",71,86610169]
["COG1431J, piwi domain-containing protein","CYB_2744",2838369,2840609,null,"+",746,86610170,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","CYB_2745",2840674,2840868,null,"+",64,86610171]
["hypothetical protein","CYB_2746",2840998,2842233,null,"+",411,86610172,null,null,"pfam03888","MucB/RseB family. Members of this family","COG3026","Negative regulator of sigma E activity ["]
["COG0494LR, NUDIX family hydrolase","CYB_2747",2842241,2842738,null,"+",165,86610173,null,"COG1051","cd03428","Diadenosine tetraphosphate (Ap4A) hydrol","COG0494","NTP pyrophosphohydrolases including oxid"]
["COG0784T, response regulator","CYB_2748",2843127,2844371,null,"+",414,86610174,null,"COG2201","pfam00072,PHA01082","Response regulator receiver domain. This ; putative transcription regulator","COG3706","Response regulator containing a CheY-lik"]
["COG0784T, response regulator","CYB_2749",2844419,2844793,null,"+",124,86610175,null,null,"smart00448","cheY-homologous receiver domain; CheY re","COG0745","Response regulators consisting of a CheY"]
["COG0835NT, CheW domain-containing protein","CYB_2750",2844901,2845449,null,"+",182,86610176,null,"COG0835","pfam01584","CheW-like domain. CheW proteins are part","COG0835","Chemotaxis signal transduction protein ["]
["COG0840NT,COG2203T, putative methyl-accepting chemotaxis protein","CYB_2751",2845498,2847735,null,"+",745,86610177,null,"COG2203","smart00283,smart00065","Methyl-accepting chemotaxis-like domains ; Domain present in phytochromes and cGMP-","COG0840,COG2203","Methyl-accepting chemotaxis protein [Cel ; FOG: GAF domain [Signal transduction mec"]
["COG0643NT,COG0784T, sensor histidine kinase/response regulator","CYB_2752",2847737,2850508,null,"+",923,86610178,null,"COG2198","cd00156,smart00387,cd00731,cd00088,pfam02601,pfam07174","Signal receiver domain; originally thoug ; Histidine kinase-like ATPases; Histidine ; CheA regulatory domain; CheA is a histid ; Histidine Phosphotransfer domain, involv ; Exonuclease VII, large subunit. This fam ; Fibronectin-attachment protein (FAP). Th","COG0643,COG2204","Chemotaxis protein histidine kinase and  ; Response regulator containing CheY-like "]
["hypothetical protein","CYB_2754",2850512,2850994,null,"+",160,86610179,{"$nulls":4},"COG3616","Predicted amino acid aldolase or racemas"]
["hypothetical protein","CYB_2753",2850970,2851659,null,"-",229,86610180,null,null,"pfam01834","XRCC1 N terminal domain. ","COG4034","Uncharacterized protein conserved in arc"]
[{"$nulls":4},"#",218248696,"Cyanothece_PCC_8801","/am/ftp-genomes/Bacteria/Cyanothece_PCC_8801/NC_011726.ptt"]
["COG0517R, CBS domain containing protein","PCC8801_3960",4147706,4148167,null,"+",153,218248686,null,null,"pfam00571","CBS domain pair. CBS domains are small i","COG0517","FOG: CBS domain [General function predic"]
["COG0457R, hypothetical protein","PCC8801_3961",4148259,4149104,null,"+",281,218248687,null,null,"pfam04539,pfam02463","Sigma-70 region 3. Region 3 forms a disc ; RecF/RecN/SMC N terminal domain. This do","COG4235,COG1729","Cytochrome c biogenesis factor [Posttran ; Uncharacterized protein conserved in bac"]
["COG1807M, putative glycosyl transferase","PCC8801_3962",4149145,4150797,null,"-",550,218248688,null,null,"pfam02366","Dolichyl-phosphate-mannose-protein manno","COG1807","4-amino-4-deoxy-L-arabinose transferase "]
["hypothetical protein","PCC8801_3963",4151084,4151812,null,"+",242,218248689,null,null,"cd06579,pfam04929","Transmembrane subunit (TM) of Escherichi ; Herpes DNA replication accessory factor.","COG2244,COG1903,COG5178","Membrane protein involved in the export  ; Cobalamin biosynthesis protein CbiD [Coe ; U5 snRNP spliceosome subunit [RNA proces"]
["hypothetical protein","PCC8801_3964",4151900,4152097,null,"-",65,218248690,null,null,"pfam06770","Actin-rearrangement-inducing factor (Ari"]
["COG0242J, peptide deformylase","PCC8801_3965",4152134,4152697,null,"-",187,218248691,null,null,"pfam01327","Polypeptide deformylase. ","COG0242","N-formylmethionyl-tRNA deformylase [Tran"]
["COG1028IQR, short-chain dehydrogenase/reductase SDR","PCC8801_3966",4152803,4153648,null,"-",281,218248692,null,null,"pfam00106,smart00609","short chain dehydrogenase. This family c ; Vault protein Inter-alpha-Trypsin domain","COG1028","Dehydrogenases with different specificit"]
["hypothetical protein","PCC8801_3967",4153668,4154117,null,"-",149,218248693,null,null,"pfam01105","emp24/gp25L/p24 family/GOLD. Members of "]
["COG0654HC, monooxygenase FAD-binding","PCC8801_3968",4154322,4155410,null,"-",362,218248694,null,null,"pfam01494","FAD binding domain. This domain is invol","COG0654","2-polyprenyl-6-methoxyphenol hydroxylase"]
["COG0538C, isocitrate dehydrogenase","PCC8801_3969",4155540,4156967,null,"-",475,218248695,null,null,"pfam00180,pfam00180,pfam03740","Isocitrate/isopropylmalate dehydrogenase ; Isocitrate/isopropylmalate dehydrogenase ; Pyridoxal phosphate biosynthesis protein","COG0538","Isocitrate dehydrogenases [Energy produc"]
["COG1431J, stem cell self-renewal protein Piwi domain protein","PCC8801_3970",4157273,4159567,null,"+",764,218248696,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","PCC8801_3971",4159564,4160913,null,"+",449,218248697,"Rec-like endonuclease fused to uncharacterized N-terminal domain",{"$nulls":3},"COG3118","Thioredoxin domain-containing protein [P"]
["COG0789K, putative transcriptional regulator, MerR family","PCC8801_3972",4160933,4161367,null,"+",144,218248698,null,null,"cd01105","Helix-turn-helix (HTH) transcription reg","COG0789","Predicted transcriptional regulators [Tr"]
["COG3386G, SMP-30/Gluconolaconase/LRE domain protein","PCC8801_3974",4162367,4163410,null,"+",347,218248699,null,null,"pfam08450,pfam08450","SMP-30/Gluconolaconase/LRE-like region.  ; SMP-30/Gluconolaconase/LRE-like region. ","COG3386","Gluconolactonase [Carbohydrate transport"]
["COG1132V, cyclic nucleotide-binding protein","PCC8801_3976",4163623,4165347,null,"-",574,218248700,null,null,"cd03251,pfam00664","MsbA is an essential ABC transporter, cl ; ABC transporter transmembrane region. Th","COG1132","ABC-type multidrug transport system, ATP"]
["hypothetical protein","PCC8801_3977",4165592,4166989,null,"+",465,218248701]
["COG0564J, pseudouridine synthase, RluA family","PCC8801_3978",4166990,4167910,null,"+",306,218248702,null,null,"cd02869,smart00363","PseudoU_synth_RsuA/RluD: Pseudouridine s ; S4 RNA-binding domain; ","COG0564","Pseudouridylate synthases, 23S RNA-speci"]
["COG0823U, hypothetical protein","PCC8801_3979",4168032,4168547,null,"+",171,218248703,null,null,"pfam07676,pfam07676,pfam07676","WD40-like Beta Propeller Repeat. This fa ; WD40-like Beta Propeller Repeat. This fa ; WD40-like Beta Propeller Repeat. This fa","COG0823","Periplasmic component of the Tol biopoly"]
["hypothetical protein","PCC8801_3980",4168588,4170291,null,"+",567,218248704,null,null,"cd04386,cd02656,cd00309","RhoGAP_nadrin: RhoGAP (GTPase-activator  ; MIT: domain contained within Microtubule ; chaperonin families, type I and type II.","COG4372,COG2136","Uncharacterized protein conserved in bac ; Predicted exosome subunit/U3 small nucle"]
["hypothetical protein","PCC8801_3981",4170402,4170614,null,"+",70,218248705]
["photosystem I reaction centre subunit XI PsaL","PCC8801_3982",4170828,4171322,null,"-",164,218248706,null,null,"pfam02605","Photosystem I reaction centre subunit XI"]
[{"$nulls":4},"#",110639330,"Cytophaga_hutchinsonii_ATCC_33406","/am/ftp-genomes/Bacteria/Cytophaga_hutchinsonii_ATCC_33406/NC_008255.ptt"]
["hypothetical protein","CHU_2945",3370380,3371369,null,"-",329,110639320]
["hypothetical protein","CHU_2946",3371660,3372253,null,"-",197,110639321]
["COG2865K, hypothetical protein","CHU_2947",3372337,3373407,null,"-",356,110639322,null,"COG2865","pfam04326","Divergent AAA domain. This family is rel","COG2865","Predicted transcriptional regulator cont"]
["COG0326O, hypothetical protein","CHU_2948",3373410,3375995,null,"-",861,110639323,null,null,"pfam02518","Histidine kinase-, DNA gyrase B-, and HS","COG0326","Molecular chaperone, HSP90 family [Postt"]
["COG1961L, site-specific recombinase","CHU_2949",3376047,3377486,null,"-",479,110639324,null,"COG1961","pfam00239,pfam07508","Resolvase, N terminal domain. The N-term ; Recombinase. This domain is usually foun","COG1961","Site-specific recombinases, DNA invertas"]
["hypothetical protein","CHU_2950",3377518,3377706,null,"-",62,110639325]
["hypothetical protein","CHU_2951",3377725,3378129,null,"-",134,110639326,{"$nulls":4},"COG1792","Cell shape-determining protein [Cell env"]
["hypothetical protein","CHU_2952",3378335,3378670,null,"-",111,110639327]
["hypothetical protein","CHU_2953",3378667,3379038,null,"-",123,110639328,null,null,"pfam03051","Peptidase C1-like family. This family is","COG3579","Aminopeptidase C [Amino acid transport a"]
["hypothetical protein","CHU_2954",3379035,3379442,null,"-",135,110639329]
["COG1431J, hypothetical protein","CHU_2955",3379892,3381943,null,"+",683,110639330,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","CHU_2956",3381945,3382997,null,"+",350,110639331,"Rec-like endonuclease fused to uncharacterized N-terminal domain",{"$nulls":3},"COG4229","Predicted enolase-phosphatase [Energy pr"]
["hypothetical protein","CHU_2957",3383113,3388779,null,"+",1888,110639332,null,"COG5635","pfam08433,pfam06675","Chromatin associated protein KTI12. This ; Protein of unknown function (DUF1177). T","COG2183,COG0378","Transcriptional accessory protein [Trans ; Ni2+-binding GTPase involved in regulati"]
["COG0699R, GTPase","CHU_2958",3388772,3391078,null,"+",768,110639333,null,"COG0699","pfam00350,cd01878,MTH00115","Dynamin family. ","COG0218","Predicted GTPase [General function predi"]
["hypothetical protein","CHU_2959",3391105,3392247,null,"-",380,110639334]
["COG1961L, DNA resolvase","CHU_2960",3392683,3393336,null,"+",217,110639335,null,"COG1961","pfam00239","Resolvase, N terminal domain. The N-term","COG1961","Site-specific recombinases, DNA invertas"]
["hypothetical protein","CHU_2961",3393346,3393774,null,"-",142,110639336,null,null,"pfam05993","Reovirus major virion structural protein"]
["hypothetical protein","CHU_2962",3393810,3394640,null,"-",276,110639337,null,"COG1262","pfam03781","Domain of unknown function (DUF323). Thi","COG1262","Uncharacterized conserved protein [Funct"]
["hypothetical protein","CHU_2963",3394692,3395003,null,"-",103,110639338]
["hypothetical protein","CHU_2964",3395024,3396406,null,"-",460,110639339,null,null,"pfam09491","AlwI restriction endonuclease. This fami"]
["COG1595K, sigma 24 related","CHU_2965",3396476,3397087,null,"+",203,110639340,null,"COG1595","pfam04542,cd06170","Sigma-70 region 2. Region 2 of sigma-70  ; C-terminal DNA-binding domain of LuxR-li","COG1595","DNA-directed RNA polymerase specialized "]
[{"$nulls":4},"#",73748042,"Dehalococcoides_CBDB1","/am/ftp-genomes/Bacteria/Dehalococcoides_CBDB1/NC_007356.ptt"]
["COG1180O, radical SAM domain-containing protein","cbdb_A93",78843,79592,null,"-",249,73748032,null,"COG1180","cd01335","Radical SAM superfamily. Enzymes of this","COG1180","Pyruvate-formate lyase-activating enzyme"]
["COG2102R, hypothetical protein","cbdb_A95",79589,80335,null,"-",248,73748033,null,"COG2102","pfam01902","ATP-binding region. This family of prote","COG2102","Predicted ATPases of PP-loop superfamily"]
["putative reductive dehalogenase anchoring protein","cbdb_B5",80419,80688,null,"-",89,73748034,{"$nulls":4},"COG4232","Thiol:disulfide interchange protein [Pos"]
["COG1600C, putative reductive dehalogenase","cbdb_A96",80710,82230,null,"-",506,73748035,null,"COG1145","pfam00037,pfam10518","4Fe-4S binding domain. Superfamily inclu ; TAT (twin-arginine translocation) pathwa","COG1600","Uncharacterized Fe-S protein [Energy pro"]
["COG0727R, hypothetical protein","cbdb_A97",82305,82928,null,"-",207,73748036,null,"COG0727","pfam03692","Uncharacterised protein family (UPF0153)","COG0727","Predicted Fe-S-cluster oxidoreductase [G"]
["COG2202T,COG4585T, sensor histidin kinase PAS domain-containing protein","cbdb_A98",82995,83891,null,"+",298,73748037,null,"COG4585","pfam08448,pfam07730","PAS fold. The PAS fold corresponds to th ; Histidine kinase. This is the dimerisati","COG4585,COG3290","Signal transduction histidine kinase [Si ; Signal transduction histidine kinase reg"]
["COG4564T, sensor histidin kinase ATP-binding subunit","cbdb_A99",83908,84186,null,"+",92,73748038,null,"COG4585","pfam02518","Histidine kinase-, DNA gyrase B-, and HS","COG4564","Signal transduction histidine kinase [Si"]
["COG2197TK, LuxR family DNA-binding response regulator","cbdb_A100",84186,84872,null,"+",228,73748039,null,"COG2197","smart00448,cd06170","cheY-homologous receiver domain; CheY re ; C-terminal DNA-binding domain of LuxR-li","COG2197","Response regulator containing a CheY-lik"]
["COG1396K, hypothetical protein","cbdb_B6",85242,85613,null,"+",123,73748040,null,"COG1396","pfam01381","Helix-turn-helix. This large family of D","COG1396","Predicted transcriptional regulators [Tr"]
["hypothetical protein","cbdb_A101",85610,86506,null,"+",298,73748041,"RecB family nuclease, COG1468 subfamily ",null,"pfam04030","D-arabinono-1,4-lactone oxidase. This do"]
["hypothetical protein","cbdb_A102",86503,88887,null,"+",794,73748042,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG0426","Uncharacterized flavoproteins [Energy pr"]
["hypothetical protein","cbdb_A103",89251,90405,null,"+",384,73748043]
["COG1396K, hypothetical protein","cbdb_B7",90541,90774,null,"+",77,73748044,null,"COG1396","pfam01381","Helix-turn-helix. This large family of D","COG2944","Predicted transcriptional regulator [Tra"]
["COG0286V, putative type I restriction-modification system methylation subunit","cbdb_A104",90777,92714,null,"+",645,73748045,null,"COG0286","pfam02384,pfam02384,pfam02463","N-6 DNA Methylase. Restriction-modificat ; N-6 DNA Methylase. Restriction-modificat ; RecF/RecN/SMC N terminal domain. This do","COG0286","Type I restriction-modification system m"]
["COG0732V, putative type I restriction enzyme, specificity protein","cbdb_A105",92701,93369,null,"+",222,73748046,null,"COG0732","pfam01420","Type I restriction modification DNA spec","COG0732","Restriction endonuclease S subunits [Def"]
["COG0610V, restriction enzyme type I helicase subunit","cbdb_A106",93366,96350,null,"+",994,73748047,null,"COG0610","pfam04851,pfam04313,cd05132","Type III restriction enzyme, res subunit ; Type I restriction enzyme R protein N te ; GAPA is an IQGAP-related protein and is ","COG0610","Type I site-specific restriction-modific"]
["COG1451R, putative zinc protease","cbdb_A107",96347,97090,null,"+",247,73748048,null,"COG1451","pfam01863","Protein of unknown function DUF45. This ","COG1451","Predicted metal-dependent hydrolase [Gen"]
["COG0553KL, helicase","cbdb_A108",97184,100285,null,"+",1033,73748049,null,"COG0553","cd00079,pfam00176,cd00668","Helicase superfamily c-terminal domain;  ; SNF2 family N-terminal domain. This doma ; This is the catalytic core domain of iso","COG0553","Superfamily II DNA/RNA helicases, SNF2 f"]
["COG0326O, hypothetical protein","cbdb_A109",100287,103358,null,"+",1023,73748050,null,"COG0326",null,null,"COG0326","Molecular chaperone, HSP90 family [Postt"]
["COG0507L,COG1961L, atp-dependent exoDNAse, exonuclease v","cbdb_A111",103391,107662,null,"+",1423,73748051,null,"COG0507","pfam07508,smart00382,pfam01443","Recombinase. This domain is usually foun ; ATPases associated with a variety of cel ; Viral (Superfamily 1) RNA helicase. Heli","COG0507","ATP-dependent exoDNAse (exonuclease V), "]
["COG1633S, hypothetical protein","cbdb_A113",108042,108350,null,"-",102,73748052,null,null,"cd01051","Manganese (Mn) catalase domain is a memb","COG1633","Uncharacterized conserved protein [Funct"]
[{"$nulls":4},"#",222110533,"Diaphorobacter_TPSY","/am/ftp-genomes/Bacteria/Diaphorobacter_TPSY/NC_011992.ptt"]
["P-type conjugative transfer protein TrbL","Dtpsy_1322",1381843,1383222,null,"+",459,222110523,null,null,"pfam04610,pfam06519","TrbL/VirB6 plasmid conjugal transfer pro ; TolA protein. This family consists of se","COG3846","Type IV secretory pathway, TrbL componen"]
["Conjugal transfer protein","Dtpsy_1323",1383247,1383951,null,"+",234,222110524,null,null,"pfam04585","Conjugal transfer protein. Family of pro","COG3701","Type IV secretory pathway, TrbF componen"]
["P-type conjugative transfer protein TrbG","Dtpsy_1324",1383948,1384937,null,"+",329,222110525,null,null,"pfam03524,pfam07174","Conjugal transfer protein. This family i ; Fibronectin-attachment protein (FAP). Th","COG3504","Type IV secretory pathway, VirB9 compone"]
["conjugation TrbI family protein","Dtpsy_1325",1384940,1386223,null,"+",427,222110526,null,null,"pfam03743,pfam03326","Bacterial conjugation TrbI-like protein. ; Herpesvirus transcription activation fac","COG2948","Type IV secretory pathway, VirB10 compon"]
["hypothetical protein","Dtpsy_1326",1386220,1386456,null,"+",78,222110527,null,null,"pfam10038","Protein of unknown function (DUF2274). M","COG5639","Uncharacterized conserved small protein "]
["hypothetical protein","Dtpsy_1327",1386681,1387406,null,"-",241,222110528,null,null,"cd02440","S-adenosylmethionine-dependent methyltra","COG2890","Methylase of polypeptide chain release f"]
["Domain of unknown function DUF1814","Dtpsy_1328",1387580,1388626,null,"-",348,222110529,null,null,"pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
["hypothetical protein","Dtpsy_1329",1388619,1389215,null,"-",198,222110530,null,null,"pfam02010","REJ domain. The REJ (Receptor for Egg Je","COG5340","Predicted transcriptional regulator [Tra"]
["phage-like hypothetical protein","Dtpsy_1330",1389382,1390029,null,"+",215,222110531]
["protein of unknown function DUF955","Dtpsy_1331",1390026,1391231,null,"+",401,222110532,null,null,"pfam06114,cd00093","Domain of unknown function (DUF955). Fam ; Helix-turn-helix XRE-family like protein","COG2856,COG1396","Predicted Zn peptidase [Amino acid trans ; Predicted transcriptional regulators [Tr"]
["stem cell self-renewal protein Piwi domain protein","Dtpsy_1332",1391462,1393717,null,"+",751,222110533,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG0389","Argonaute homolog, implicated in RNA met ; Nucleotidyltransferase/DNA polymerase in"]
["hypothetical protein","Dtpsy_1333",1393732,1394928,null,"+",398,222110534,"Rec-like endonuclease fused to uncharacterized N-terminal domain"]
["hypothetical protein","Dtpsy_1334",1395917,1396543,null,"+",208,222110535]
["Ku protein","Dtpsy_1335",1396768,1397811,null,"+",347,222110536,null,null,"cd00789,pfam05722","Ku-core domain, Ku-like subfamily; compo ; Ustilago B locus mating-type protein. Th","COG1273,COG1754","Ku-homolog [Replication, recombination,  ; Uncharacterized C-terminal domain of top"]
["transposase IS4 family protein","Dtpsy_1337",1400017,1401105,null,"+",362,222110537,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3666","Transposase and inactivated derivatives "]
["short-chain dehydrogenase/reductase SDR","Dtpsy_1338",1401883,1402794,null,"+",303,222110538,null,null,"pfam00106","short chain dehydrogenase. This family c","COG1028","Dehydrogenases with different specificit"]
["glutamate/cysteine ligase","Dtpsy_1339",1402967,1404499,null,"+",510,222110539,null,null,"pfam04262","Glutamate-cysteine ligase. Family of bac","COG2918","Gamma-glutamylcysteine synthetase [Coenz"]
["thiamine pyrophosphate protein domain protein TPP-binding","Dtpsy_1340",1404669,1406366,null,"-",565,222110540,null,null,"CHL00099","acetohydroxyacid synthase large subunit","COG0028","Thiamine pyrophosphate-requiring enzymes"]
["transcriptional regulator, LysR family","Dtpsy_1341",1406580,1407497,null,"+",305,222110541,null,null,"pfam03466,pfam00126","LysR substrate binding domain. The struc ; Bacterial regulatory helix-turn-helix pr","COG0583","Transcriptional regulator [Transcription"]
["major facilitator superfamily MFS_1","Dtpsy_1342",1407544,1408746,null,"-",400,222110542,null,null,"pfam07690","Major Facilitator Superfamily. ","COG2814","Arabinose efflux permease [Carbohydrate "]
["arsenical-resistance protein","Dtpsy_1343",1408727,1409809,null,"-",360,222110543,null,null,"pfam01758","Sodium Bile acid symporter family. This ","COG0798","Arsenite efflux pump ACR3 and related pe"]
[{"$nulls":4},"#",39996463,"Geobacter_sulfurreducens","/am/ftp-genomes/Bacteria/Geobacter_sulfurreducens/NC_002939.ptt"]
["COG2221C, iron-sulfur cluster-binding protein","GSU1351",1477837,1478805,null,"+",322,39996453,null,"COG2221","pfam01077,pfam03460","Nitrite and sulphite reductase 4Fe-4S do ; Nitrite/Sulfite reductase ferredoxin-lik","COG2221","Dissimilatory sulfite reductase (desulfo"]
["COG0425O, hypothetical protein","GSU1352",1478792,1479016,null,"+",74,39996454,null,"COG0425","cd00291","SirA, YedF, and YeeD. Two-layered alpha/","COG0425","Predicted redox protein, regulator of di"]
["COG2161D, prevent-host-death family protein","GSU1353",1479360,1479635,null,"+",91,39996455,null,"COG2161","pfam02604","Phd_YefM. ","COG2161","Antitoxin of toxin-antitoxin stability s"]
["COG3668R, plasmid stabilization system protein family protein","GSU1354",1479640,1479951,null,"+",103,39996456,null,"COG3668","pfam05016","Plasmid stabilisation system protein. Me","COG3668","Plasmid stabilization system protein [Ge"]
["COG2963L, ISGsu7, transposase OrfA","GSU1355",1480115,1480477,null,"+",120,39996457,null,null,"cd03679","Coenzyme B12-dependent-methylmalonyl coe"]
["COG2801L, ISGsu7, transposase OrfB","GSU1356",1480474,1481364,null,"+",296,39996458,null,"COG2801","pfam00665","Integrase core domain. Integrase mediate","COG2801","Transposase and inactivated derivatives "]
["COG1694R, hypothetical protein","GSU1357",1481427,1481783,null,"+",118,39996459,null,"COG1694","pfam03819","MazG nucleotide pyrophosphohydrolase dom","COG1694","Predicted pyrophosphatase [General funct"]
["COG0714R,COG1974KT,COG3410S, hypothetical protein","GSU1358",1481813,1484215,null,"+",800,39996460,null,"COG0507","pfam09848,cd06529,pfam04851","Uncharacterized conserved protein (DUF20 ; Peptidase S24 LexA-like proteins are inv ; Type III restriction enzyme, res subunit","COG3410,COG0467","Uncharacterized conserved protein [Funct ; RecA-superfamily ATPases implicated in s"]
["COG1061KL,COG3886L, helicase, putative","GSU1359",1484238,1487363,null,"+",1041,39996461,null,"COG3886","pfam04851,cd00079,cd00138","Type III restriction enzyme, res subunit ; Helicase superfamily c-terminal domain;  ; Phospholipase D. Active site motifs; The","COG1061,COG3886","DNA or RNA helicases of superfamily II [ ; Predicted HKD family nuclease [DNA repli"]
["hypothetical protein","GSU1360",1487423,1489186,null,"+",587,39996462,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain","COG0846","cd01406,pfam02399","Sir2-like: Prokaryotic group of uncharac ; Origin of replication binding protein. T","COG0846","NAD-dependent protein deacetylases, SIR2"]
["piwi domain-containing protein","GSU1361",1489176,1490597,null,"+",473,39996463,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","GSU1362",1490654,1491835,null,"+",393,39996464]
["COG3344L, RNA-directed DNA polymerase","GSU1363",1491977,1493119,null,"+",380,39996465,null,"COG3344","cd03487","RT_Bac_retron_II: Reverse transcriptases","COG3344","Retron-type reverse transcriptase [DNA r"]
["COG3440V, HNH endonuclease family protein","GSU1364",1493171,1494151,null,"+",326,39996466,null,"COG3440","cd00085,pfam06274,pfam01365","HNH nucleases; HNH endonuclease signatur ; Bacteriophage Mu tail sheath protein (Gp ; RIH domain. The RIH (RyR and IP3R Homolo","COG3440","Predicted restriction endonuclease [Defe"]
["COG0551L,COG1715V, Mrr restriction system protein, putative","GSU1365",1494206,1495252,null,"+",348,39996467,null,"COG1787","pfam04471,pfam01396,pfam03169","Restriction endonuclease. Prokaryotic fa ; Topoisomerase DNA binding C4 zinc finger ; OPT oligopeptide transporter protein. Th","COG1715,COG0839","Restriction endonuclease [Defense mechan ; NADH:ubiquinone oxidoreductase subunit 6"]
["hypothetical protein","GSU1366",1495607,1495750,null,"+",47,39996468]
["hypothetical protein","GSU1367",1495968,1496621,null,"+",217,39996469,{"$nulls":4},"COG5340","Predicted transcriptional regulator [Tra"]
["hypothetical protein","GSU1368",1496621,1497493,null,"+",290,39996470,null,"COG2253","pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
["COG2852S, hypothetical protein","GSU1369",1497512,1498039,null,"+",175,39996471,null,"COG2852","cd01038","Domain of unknown function, appears to b","COG2852","Very-short-patch-repair endonuclease [Re"]
["COG1453R, aldo/keto reductase family oxidoreductase","GSU1370",1498229,1499281,null,"-",350,39996472,null,"COG1453","cd06660,cd01916","Aldo-keto reductases (AKRs) are a superf ; Acetyl-CoA synthase (ACS), also known as","COG1453","Predicted oxidoreductases of the aldo/ke"]
["COG1902C, oxidoreductase, FAD/FMN-binding","GSU1371",1499442,1500539,null,"-",365,39996473,null,"COG1902","cd02932","Old yellow enzyme (OYE) YqjM-like FMN bi","COG1902","NADH:flavin oxidoreductases, Old Yellow "]
[{"$nulls":4},"#",148266051,"Geobacter_uraniumreducens_Rf4","/am/ftp-genomes/Bacteria/Geobacter_uraniumreducens_Rf4/NC_009483.ptt"]
["COG3706T, response regulator receiver protein","Gura_4030",4684146,4684796,null,"+",216,148266041,null,"COG3437","cd00156,cd00082","Signal receiver domain; originally thoug ; Histidine Kinase A (dimerization/phospho","COG0745,COG5002","Response regulators consisting of a CheY ; Signal transduction histidine kinase [Si"]
["COG0606O, Mg chelatase, subunit ChlI","Gura_4031",4684864,4686393,null,"-",509,148266042,null,"COG0606","pfam01078,pfam05362","Magnesium chelatase, subunit ChlI. Magne ; Lon protease (S16) C-terminal proteolyti","COG0606","Predicted ATPase with chaperone activity"]
["COG0492O, thioredoxin reductase","Gura_4032",4686443,4687393,null,"-",316,148266043,null,"COG0492","pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG0492","Thioredoxin reductase [Posttranslational"]
["hypothetical protein","Gura_4033",4687545,4688297,null,"+",250,148266044]
["COG1230P, cation diffusion facilitator family transporter","Gura_4034",4688361,4689341,null,"+",326,148266045,null,"COG1230","pfam01545","Cation efflux family. Members of this fa","COG1230","Co/Zn/Cd efflux system component [Inorga"]
["COG1171E, threonine dehydratase","Gura_4035",4689369,4690577,null,"+",402,148266046,null,"COG1171","cd01562,cd04886","Threonine dehydratase: The first step in ; This CD includes the C-terminal ACT doma","COG1171,COG2061","Threonine dehydratase [Amino acid transp ; ACT-domain-containing protein, predicted"]
["COG1451R, hypothetical protein","Gura_4036",4691017,4691721,null,"-",234,148266047,null,"COG1451","pfam01863","Protein of unknown function DUF45. This ","COG1451","Predicted metal-dependent hydrolase [Gen"]
["COG0610V, HsdR family type I site-specific deoxyribonuclease","Gura_4037",4691718,4694972,null,"-",1084,148266048,null,"COG0610","pfam04313,pfam04851","Type I restriction enzyme R protein N te ; Type III restriction enzyme, res subunit","COG0610","Type I site-specific restriction-modific"]
["hypothetical protein","Gura_4038",4695001,4695507,null,"-",168,148266049,null,null,"smart00670","Large family of predicted nucleotide-bin","COG2949","Uncharacterized membrane protein [Functi"]
["COG1396K,COG2856E, helix-turn-helix domain-containing protein","Gura_4039",4695504,4696574,null,"-",356,148266050,null,"COG1396","pfam06114,cd00093","Domain of unknown function (DUF955). Fam ; Helix-turn-helix XRE-family like protein","COG2856,COG1396","Predicted Zn peptidase [Amino acid trans ; Predicted transcriptional regulators [Tr"]
["COG1431J, hypothetical protein","Gura_4040",4696924,4698345,null,"-",473,148266051,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","Gura_4041",4698342,4700081,null,"-",579,148266052,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846","NAD-dependent protein deacetylases, SIR2"]
["COG0732V, restriction modification system DNA specificity subunit","Gura_4042",4700105,4701391,null,"-",428,148266053,null,"COG0732","pfam01420,pfam01420","Type I restriction modification DNA spec ; Type I restriction modification DNA spec","COG0732","Restriction endonuclease S subunits [Def"]
["COG0286V, N-6 DNA methylase","Gura_4043",4701384,4703858,null,"-",824,148266054,null,"COG0286","pfam02384,pfam05235,pfam00081","N-6 DNA Methylase. Restriction-modificat ; CHAD domain. The CHAD domain is an alpha ; Iron/manganese superoxide dismutases, al","COG0286,COG3064","Type I restriction-modification system m ; Membrane protein involved in colicin upt"]
["COG3222S, hypothetical protein","Gura_4044",4704003,4704686,null,"-",227,148266055,null,"COG3222","pfam09837","Uncharacterized protein conserved in bac","COG3222","Uncharacterized protein conserved in bac"]
["COG1469S, putative GTP cyclohydrolase","Gura_4045",4704723,4705580,null,"-",285,148266056,null,"COG1469","pfam02649","Uncharacterized ACR, COG1469. ","COG1469","Uncharacterized conserved protein [Funct"]
["COG0603R, exsB protein","Gura_4046",4705592,4706278,null,"-",228,148266057,null,"COG0603","pfam06508","ExsB. This family includes putative tran","COG0603","Predicted PP-loop superfamily ATPase [Ge"]
["COG0568K, RpoD family RNA polymerase sigma factor","Gura_4047",4706383,4708143,null,"-",586,148266058,null,"COG0568","pfam04539,pfam04542,pfam03979,pfam04545,pfam00140,pfam02463","Sigma-70 region 3. Region 3 forms a disc ; Sigma-70 region 2. Region 2 of sigma-70  ; Sigma-70 factor, region 1.1. Region 1.1  ; Sigma-70, region 4. Region 4 of sigma-70 ; Sigma-70 factor, region 1.2. ","COG0568,COG1196","DNA-directed RNA polymerase, sigma subun ; Chromosome segregation ATPases [Cell div"]
["COG0358L, DNA primase","Gura_4048",4708171,4709934,null,"-",587,148266059,null,"COG0358","pfam01807,pfam08275,cd03364,pfam10410","CHC2 zinc finger. This domain is princip ; DNA primase catalytic core, N-terminal d ; TOPRIM_DnaG_primases: The topoisomerase- ; DnaB-helicase binding domain of primase.","COG0358","DNA primase (bacterial type) [DNA replic"]
["COG1286R, colicin V production protein","Gura_4049",4709960,4710469,null,"-",169,148266060,null,"COG1286","pfam02674","Colicin V production protein. Colicin V ","COG1286","Uncharacterized membrane protein, requir"]
["COG1610S, GatB/Yqey domain-containing protein","Gura_4050",4710581,4711024,null,"-",147,148266061,null,"COG1610","pfam09424","Yqey-like protein. The function of this ","COG1610","Uncharacterized conserved protein [Funct"]
[{"$nulls":4},"#",55376414,"Haloarcula_marismortui_ATCC_43049","/am/ftp-genomes/Bacteria/Haloarcula_marismortui_ATCC_43049/NC_006394.ptt"]
["hypothetical protein","pNG6181",140773,141999,null,"+",408,55376570,null,null,"pfam01988,cd00919,cd01321","Integral membrane protein DUF125. This f ; Heme-copper oxidase subunit I.  Heme-cop ; Adenosine deaminase-related growth facto","COG5177,COG1290,COG1377","Uncharacterized conserved protein [Funct ; Cytochrome b subunit of the bc complex [ ; Flagellar biosynthesis pathway, componen"]
["hypothetical protein","pNG6182",141968,142450,null,"-",160,55376571,null,null,"pfam03154,pfam05976","Atrophin-1 family. Atrophin-1 is the pro ; Bacterial membrane protein of unknown fu","COG1283","Na+/phosphate symporter [Inorganic ion t"]
["COG2135S, hypothetical protein","pNG6183",142737,143426,null,"+",229,55376572,null,"COG2135","pfam02586","Uncharacterised ACR, COG2135. ","COG2135","Uncharacterized conserved protein [Funct"]
["COG1474LO, cell division control protein 6","pNG6184",143442,144470,null,"-",342,55376573,null,"COG1474","pfam03965,cd03227,pfam10070","Penicillinase repressor. The penicillina ; ABC-type Class 2 contains systems involv ; Uncharacterized protein conserved in bac","COG1474","Cdc6-related protein, AAA superfamily AT"]
["COG0553KL, putative DEAD/H helicase","pNG6185",144649,148287,null,"-",1212,55376574,null,"COG0553","cd00079,pfam00176,pfam05949","Helicase superfamily c-terminal domain;  ; SNF2 family N-terminal domain. This doma ; Bacterial protein of unknown function (D","COG0553,COG0553","Superfamily II DNA/RNA helicases, SNF2 f ; Superfamily II DNA/RNA helicases, SNF2 f"]
["COG1743L, hypothetical protein","pNG6187",148288,151185,null,"-",965,55376575,null,"COG1743","pfam06634,pfam05093","Protein of unknown function (DUF1156). T ; Anamorsin family. This family contains s","COG1743","Adenine-specific DNA methylase containin"]
["hypothetical protein","pNG6188",151201,151818,null,"-",205,55376576,{"$nulls":4},"COG3451","Type IV secretory pathway, VirB4 compone"]
["COG1483R, hypothetical protein","pNG6189",151815,155108,null,"-",1097,55376577,null,"COG1483","pfam04465,pfam03344,MTH00154","Protein of unknown function (DUF499). Fa ; Daxx Family. The Daxx protein (also know ; cytochrome c oxidase subunit II; Provisi","COG1483","Predicted ATPase (AAA+ superfamily) [Gen"]
["hypothetical protein","pNG6190",155105,155245,null,"-",46,55376578,null,null,"pfam10624","Plasmid conjugative transfer entry exclu"]
["COG1363G, hypothetical protein","pNG6001",158,721,null,"+",187,55376413,{"$nulls":4},"COG3017","Outer membrane lipoprotein involved in o"]
["COG0233J, hypothetical protein","pNG6002",739,2157,null,"-",472,55376414,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","pNG6003",2154,3497,null,"-",447,55376415,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain",null,"pfam06160","Septation ring formation regulator, EzrA"]
["hypothetical protein","pNG6004",3691,4539,null,"+",282,55376416,null,null,"pfam00821","Phosphoenolpyruvate carboxykinase. Catal"]
["hypothetical protein","pNG6005",4536,5333,null,"+",265,55376417,null,null,"pfam01850,pfam10641","PIN domain. This PIN (PilT N terminus) d ; Typoviral methyltransferase. Positive-st","COG1848","Predicted nucleic acid-binding protein, "]
["COG4108J, hypothetical protein","pNG6006",5401,5991,null,"+",196,55376418,null,null,"pfam05478","Prominin. The prominins are an emerging "]
["COG3269R, hypothetical protein","pNG6007",6049,6483,null,"+",144,55376419,null,"COG3269","pfam01938","TRAM domain. This small domain has no kn","COG3269","Predicted RNA-binding protein, contains "]
["hypothetical protein","pNG6009",6559,6912,null,"+",117,55376420,null,null,"cd03342","TCP-1 (CTT or eukaryotic type II) chaper"]
["COG0617J, hypothetical protein","pNG6010",6997,7692,null,"-",231,55376421,null,null,"pfam08843","Domain of unknown function (DUF1814). Th","COG4714","Uncharacterized membrane-anchored protei"]
["COG0642T, sigma-70 like region 4 HTH domain-containing protein","pNG6011",7689,8363,null,"-",224,55376422,null,null,"smart00418","helix_turn_helix, Arsenical Resistance O","COG1568","Predicted methyltransferases [General fu"]
["COG1192D, partition protein","pNG6012",8770,9588,null,"+",272,55376423,null,"COG1192","pfam01656","CobQ/CobB/MinD/ParA nucleotide binding d","COG1192","ATPases involved in chromosome partition"]
["hypothetical protein","pNG6014",9585,9992,null,"+",135,55376424,null,null,"pfam06933,pfam01890","Special lobe-specific silk protein SSP16 ; CbiG. Members of this family are involve"]
[{"$nulls":4},"#",222475719,"Halorubrum_lacusprofundi_ATCC_49239","/am/ftp-genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012028.ptt"]
["COG1414K, transcriptional regulator TrmB","Hlac_2775",32249,32842,null,"+",197,222475709,null,null,"pfam01978","Sugar-specific transcriptional regulator","COG3355,COG3307","Predicted transcriptional regulator [Tra ; Lipid A core - O-antigen ligase and rela"]
["hypothetical protein","Hlac_2776",32846,33385,null,"+",179,222475710,null,null,"cd01394","RadB. The archaeal protein radB shares s"]
["hypothetical protein","Hlac_2777",33981,34154,null,"+",57,222475711]
["hypothetical protein","Hlac_2778",34318,34524,null,"+",68,222475712,null,null,"PHA00727","hypothetical protein"]
["COG0589T, UspA domain protein","Hlac_2779",34655,35083,null,"+",142,222475713,null,null,"pfam00582","Universal stress protein family. The uni","COG0589","Universal stress protein UspA and relate"]
["COG3293L, transposase IS4 family protein","Hlac_2780",35219,36040,null,"+",273,222475714,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3039","Transposase and inactivated derivatives,"]
["COG3385L, transposase (ISH3)","Hlac_2781",36108,37274,null,"+",388,222475715,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3385","FOG: Transposase and inactivated derivat"]
["COG3593L,COG3950R, hypothetical protein","Hlac_2782",37432,38754,null,"-",440,222475716,null,null,"cd03240,cd00267","The catalytic domains of Rad50 are simil ; ABC (ATP-binding cassette) transporter n","COG3593,COG3593","Predicted ATP-dependent endonuclease of  ; Predicted ATP-dependent endonuclease of "]
["hypothetical protein","Hlac_2783",38773,38985,null,"-",70,222475717]
["COG0438M, hypothetical protein","Hlac_2784",39202,40272,null,"+",356,222475718]
["COG1431J, stem cell self-renewal protein Piwi domain protein","Hlac_2785",40738,42894,null,"+",718,222475719,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["transposase (ISH6)","Hlac_2786",42942,44279,null,"+",445,222475720,null,null,"pfam00872","Transposase, Mutator family. ","COG3263","NhaP-type Na+/H+ and K+/H+ antiporters w"]
["COG0433R, hypothetical protein","Hlac_2787",44534,46408,null,"-",624,222475721,null,null,"pfam01935,pfam05872","Domain of unknown function DUF87. The fu ; Bacterial protein of unknown function (D","COG0433","HerA helicase [Replication, recombinatio"]
["hypothetical protein","Hlac_2788",46484,47800,null,"-",438,222475722,null,null,"pfam09376","NurA domain. This family includes NurA a"]
["COG0419L, SMC domain protein","Hlac_2789",47932,50712,null,"-",926,222475723,null,null,"pfam02463,cd03240,cd03240","RecF/RecN/SMC N terminal domain. This do ; The catalytic domains of Rad50 are simil ; The catalytic domains of Rad50 are simil","COG0419","ATPase involved in DNA repair [DNA repli"]
["COG0420L, metallophosphoesterase","Hlac_2790",50740,51954,null,"-",404,222475724,null,null,"pfam00149","Calcineurin-like phosphoesterase. This f","COG0420","DNA repair exonuclease [DNA replication,"]
["hypothetical protein","Hlac_2791",52329,54659,null,"-",776,222475725,null,null,"cd03466,pfam01474","Nitrogenase_nifN_2: A subgroup of the Ni ; Class-II DAHP synthetase family. Members","COG1502,COG5271","Phosphatidylserine/phosphatidylglyceroph ; AAA ATPase containing von Willebrand fac"]
["hypothetical protein","Hlac_2792",55066,55737,null,"-",223,222475726,null,null,"smart00421","helix_turn_helix, Lux Regulon; lux regul","COG2197","Response regulator containing a CheY-lik"]
["COG1397O, ADP-ribosylation/Crystallin J1","Hlac_2793",56232,57158,null,"-",308,222475727,null,null,"pfam03747","ADP-ribosylglycohydrolase. This family i","COG1397","ADP-ribosylglycohydrolase [Posttranslati"]
["hypothetical protein","Hlac_2794",57531,58262,null,"+",243,222475728,{"$nulls":4},"COG0822","NifU homolog involved in Fe-S cluster fo"]
["hypothetical protein","Hlac_2795",58839,59027,null,"+",62,222475729]
[{"$nulls":4},"#",222476126,"Halorubrum_lacusprofundi_ATCC_49239","/am/ftp-genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012028.ptt"]
["hypothetical protein","Hlac_3218",460670,460987,null,"+",105,222476116,{"$nulls":4},"COG5013","Nitrate reductase alpha subunit [Energy "]
["COG1002V, hypothetical protein","Hlac_3219",461000,464896,null,"-",1298,222476117,null,null,"pfam02384","N-6 DNA Methylase. Restriction-modificat","COG0286,COG4748,COG1293","Type I restriction-modification system m ; Uncharacterized conserved protein [Funct ; Predicted RNA-binding protein homologous"]
["hypothetical protein","Hlac_3220",465199,465933,null,"-",244,222476118,null,null,"MTH00051","cytochrome c oxidase subunit II; Provisi"]
["COG1033R, hypothetical protein","Hlac_3221",467105,469729,null,"+",874,222476119,null,null,"pfam02460,pfam02460","Patched family. The transmembrane protei ; Patched family. The transmembrane protei","COG1033","Predicted exporters of the RND superfami"]
["COG1657I, Squalene cyclase-like protein","Hlac_3222",469821,471803,null,"+",660,222476120,null,null,"cd02889,pfam10446","Squalene cyclase (SQCY) domain; found in ; Protein of unknown function (DUF2457). T","COG1657","Squalene cyclase [Lipid metabolism]"]
["COG2801L,COG3316L, transposase","Hlac_3224",472276,472956,null,"+",226,222476121,null,null,"pfam00665","Integrase core domain. Integrase mediate","COG3316","Transposase and inactivated derivatives "]
["COG1061KL,COG1112L, type III restriction protein res subunit","Hlac_3225",473008,481287,null,"-",2759,222476122,null,null,"pfam04851,cd00221,cd00079,pfam01496,pfam05887,pfam04851,pfam05976","Type III restriction enzyme, res subunit ; Very Short Patch Repair (Vsr) Endonuclea ; Helicase superfamily c-terminal domain;  ; V-type ATPase 116kDa subunit family. Thi ; Procyclic acidic repetitive protein (PAR ; Type III restriction enzyme, res subunit ; Bacterial membrane protein of unknown fu","COG1112,COG1061,COG1061,COG2852","Superfamily I DNA and RNA helicases and  ; DNA or RNA helicases of superfamily II [ ; DNA or RNA helicases of superfamily II [ ; Very-short-patch-repair endonuclease [Re"]
["COG1943L, transposase IS200-family protein","Hlac_3227",482057,482449,null,"+",130,222476123,null,null,"pfam01797","Transposase IS200 like. Transposases are","COG1943","Transposase and inactivated derivatives "]
["COG0675L, transposase, IS605 OrfB family","Hlac_3228",482451,483710,null,"+",419,222476124,null,null,"pfam07282,pfam00676","Putative transposase DNA-binding domain. ; Dehydrogenase E1 component. This family ","COG0675","Transposase and inactivated derivatives "]
["hypothetical protein","Hlac_3229",486230,488818,null,"-",862,222476125,{"$nulls":4},"COG0748","Putative heme iron utilization protein ["]
["stem cell self-renewal protein Piwi domain protein","Hlac_3230",489068,491263,null,"+",731,222476126,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG1049C, hypothetical protein","Hlac_3231",491244,492191,null,"-",315,222476127,{"$nulls":4},"COG2856","Predicted Zn peptidase [Amino acid trans"]
["hypothetical protein","Hlac_3232",492325,492768,null,"-",147,222476128,null,null,"pfam06160","Septation ring formation regulator, EzrA"]
["COG1948L, helix-hairpin-helix motif protein","Hlac_3233",493168,494625,null,"+",485,222476129,null,null,"cd06126,pfam10391","DEDDy exonucleases, part of the DnaQ-lik ; Fingers domain of DNA polymerase lambda.","COG0272,COG3359","NAD-dependent DNA ligase (contains BRCT  ; Predicted exonuclease [DNA replication, "]
["COG1205R, DEAD/DEAH box helicase domain protein","Hlac_3234",494628,497195,null,"+",855,222476130,null,null,"smart00487,pfam09369,smart00490","DEAD-like helicases superfamily; ","COG1205","Distinct helicase family with a unique C"]
["hypothetical protein","Hlac_3235",497203,497652,null,"+",149,222476131,null,null,"pfam01189","NOL1/NOP2/sun family. "]
["COG0420L, metallophosphoesterase","Hlac_3236",497924,499228,null,"+",434,222476132,null,null,"pfam00149,pfam03780","Calcineurin-like phosphoesterase. This f ; Protein of unknown function (DUF322). Th","COG0420","DNA repair exonuclease [DNA replication,"]
["COG1196D,COG4717S, hypothetical protein","Hlac_3237",499225,502701,null,"+",1158,222476133,null,null,"pfam02463,pfam02463,pfam01810,cd03227,cd03240","RecF/RecN/SMC N terminal domain. This do ; RecF/RecN/SMC N terminal domain. This do ; LysE type translocator. This family cons ; ABC-type Class 2 contains systems involv ; The catalytic domains of Rad50 are simil","COG4717,COG1106","Uncharacterized conserved protein [Funct ; Predicted ATPases [General function pred"]
["hypothetical protein","Hlac_3239",503295,504725,null,"+",476,222476134]
["COG0582L, integrase family protein","Hlac_3240",505013,506155,null,"+",380,222476135,null,null,"cd01189","phiLC3 phage and phage-related integrase","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein","Hlac_3241",506093,506413,null,"-",106,222476136]
[{"$nulls":4},"#",222481225,"Halorubrum_lacusprofundi_ATCC_49239","/am/ftp-genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012030.ptt"]
["COG1583L, CRISPR-associated protein Cas6","Hlac_3333",85031,85816,null,"-",261,222481215,null,null,"pfam01881","Protein of unknown function DUF57. This ","COG1583","CRISPR system related protein, RAMP supe"]
["transposase (ISH6)","Hlac_3334",86164,87501,null,"-",445,222481216,null,null,"pfam00872","Transposase, Mutator family. ","COG3263","NhaP-type Na+/H+ and K+/H+ antiporters w"]
["hypothetical protein","Hlac_3335",87682,88197,null,"+",171,222481217]
["COG0751J, hypothetical protein","Hlac_3336",89616,90473,null,"+",285,222481218]
["hypothetical protein","Hlac_3337",90466,91035,null,"+",189,222481219]
["COG1192D, Cobyrinic acid ac-diamide synthase","Hlac_3338",91307,92164,null,"+",285,222481220,null,null,"pfam01656","CobQ/CobB/MinD/ParA nucleotide binding d","COG1192","ATPases involved in chromosome partition"]
["hypothetical protein","Hlac_3339",92362,92607,null,"+",81,222481221,null,null,"cd02757","This CD includes the respiratory arsenat","COG1766","Flagellar basal body M-ring protein [Cel"]
["COG0582L, hypothetical protein","Hlac_3340",92604,94025,null,"-",473,222481222,null,null,"cd01182,cd00798","DNA breaking-rejoining enzymes, intergra ; XerD and XerC integrases, DNA breaking-r","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein","Hlac_3341",94132,94245,null,"-",37,222481223]
["hypothetical protein","Hlac_3342",95180,95410,null,"-",76,222481224]
["hypothetical protein","Hlac_3344",95898,97322,null,"+",474,222481225,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG1483R, AAA family ATPase","Hlac_3345",97421,99925,null,"+",834,222481226,null,null,"pfam04465,PHA00370","Protein of unknown function (DUF499). Fa ; attachment protein","COG1483,COG5000","Predicted ATPase (AAA+ superfamily) [Gen ; Signal transduction histidine kinase inv"]
["PglZ domain protein","Hlac_3346",99909,100799,null,"+",296,222481227,null,null,"pfam01663","Type I phosphodiesterase / nucleotide py"]
["COG1743L, adenine-specific DNA methylase","Hlac_3347",100805,103441,null,"+",878,222481228,null,null,"pfam01555,pfam06634,pfam01555,cd04257","DNA methylase. Members of this family ar ; Protein of unknown function (DUF1156). T ; DNA methylase. Members of this family ar ; AAK_AK-HSDH: Amino Acid Kinase Superfami","COG1743","Adenine-specific DNA methylase containin"]
["hypothetical protein","Hlac_3348",103520,103918,null,"+",132,222481229,null,null,"cd04735","Old yellow enzyme (OYE)-related FMN bind","COG0269","3-hexulose-6-phosphate synthase and rela"]
["COG0338L, D12 class N6 adenine-specific DNA methyltransferase","Hlac_3349",104041,104895,null,"+",284,222481230,null,null,"pfam02086","D12 class N6 adenine-specific DNA methyl","COG0338","Site-specific DNA methylase [DNA replica"]
["hypothetical protein","Hlac_3350",104908,105984,null,"-",358,222481231]
["COG3385L, transposase (ISH3)","Hlac_3351",106183,107349,null,"+",388,222481232,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3385","FOG: Transposase and inactivated derivat"]
["COG1401V, ATPase associated with various cellular activities AAA_5","Hlac_3352",107669,109915,null,"-",748,222481233,null,null,"pfam07728,cd06184","ATPase family associated with various ce ; FAD_NAD(P)H binding domain of flavohemog","COG0714,COG1707","MoxR-like ATPases [General function pred ; ACT domain-containing protein [General f"]
["hypothetical protein","Hlac_3353",109949,110131,null,"+",60,222481234]
["hypothetical protein","Hlac_3354",110272,112239,null,"-",655,222481235,null,null,"cd03346,pfam07149","Eukaryotic tryptophan hydroxylase (TrpOH ; Pes-10. This family consists of several ","COG1139","Uncharacterized conserved protein contai"]
[{"$nulls":4},"#",13475183,"Mesorhizobium_loti","/am/ftp-genomes/Bacteria/Mesorhizobium_loti/NC_002678.ptt"]
["COG3843U, hypothetical protein","mlr6191",5011308,5013278,null,"+",656,13475173,null,null,"pfam05139","Erythromycin esterase. This family inclu","COG3843","Type IV secretory pathway, VirD2 compone"]
["COG0476H, hypothetical protein","mll6192",5013328,5014887,null,"-",519,13475174,null,"COG0476","pfam00899","ThiF family. This family contains a repe","COG0476","Dinucleotide-utilizing enzymes involved "]
["hypothetical protein","mll6193",5014891,5015529,null,"-",212,13475175,null,null,"pfam01028","Eukaryotic DNA topoisomerase I, catalyti","COG1045","Serine acetyltransferase [Amino acid tra"]
["hypothetical protein","mll8758",5015376,5015993,null,"-",205,13475176]
["hypothetical protein","mll6195",5015986,5016510,null,"-",174,13475177,null,null,"pfam10790,pfam03067","Protein of Unknown function (DUF2604). F ; Chitin binding domain. This domain is fo","COG2080","Aerobic-type carbon monoxide dehydrogena"]
["hypothetical protein","mlr6196",5016994,5017953,null,"+",319,13475178,null,null,"pfam07183","Protein of unknown function (DUF1403). T","COG1577","Mevalonate kinase [Lipid metabolism]"]
["COG1386K, hypothetical protein","mlr6199",5017956,5018678,null,"+",240,13475179,null,"COG1386","pfam04079","Putative transcriptional regulators (Ypu","COG1386","Chromosome segregation and condensation "]
["hypothetical protein","mlr6200",5018756,5019340,null,"+",194,13475180,{"$nulls":4},"COG1142","Fe-S-cluster-containing hydrogenase comp"]
["hypothetical protein","msl6202",5019797,5019949,null,"-",50,13475181]
["hypothetical protein","mlr6203",5020023,5021447,null,"+",474,13475182,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["hypothetical protein","mlr6204",5021381,5022898,null,"+",505,13475183,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG5077","Ubiquitin carboxyl-terminal hydrolase [P"]
["COG1410E, 5-methyltetrahydrofolate-homocysteine S-methyltransferase","msl6205",5023438,5023656,null,"-",72,13475184,null,"COG1410","pfam02965","Vitamin B12 dependent methionine synthas","COG1410","Methionine synthase I, cobalamin-binding"]
["COG1410E, 5-methyltetrahydrofolate-homocysteine S-methyltransferase","mll6206",5023653,5024924,null,"-",423,13475185,null,"COG1410","cd00740,cd02069,pfam02965","MeTr subgroup of pterin binding enzymes. ; B12 binding domain of methionine synthas ; Vitamin B12 dependent methionine synthas","COG1410","Methionine synthase I, cobalamin-binding"]
["COG0534V, DNA-damage-inducible protein","mll6207",5025176,5026516,null,"-",446,13475186,null,"COG0534","pfam01554,pfam01554","MatE. The MatE domain","COG0534","Na+-driven multidrug efflux pump [Defens"]
["COG0076E, histidine decarboxylase","mlr6209",5027871,5028980,null,"+",369,13475187,null,"COG0076","cd06450","DOPA decarboxylase family. This family b","COG0076","Glutamate decarboxylase and related PLP-"]
["COG0174E, glutamine synthetase III","mlr6210",5029165,5030562,null,"+",465,13475188,null,"COG0174","pfam00120","Glutamine synthetase, catalytic domain. ","COG0174","Glutamine synthetase [Amino acid transpo"]
["COG0787M, alanine racemase","mll6211",5030901,5032094,null,"-",397,13475189,null,"COG0787","cd00430","Alanine racemase. This CD corresponds to","COG0787","Alanine racemase [Cell envelope biogenes"]
["hypothetical protein","mll6212",5032482,5032823,null,"-",113,13475190,null,null,"pfam00665","Integrase core domain. Integrase mediate"]
["hypothetical protein","msl6213",5032836,5033045,null,"-",69,13475191,null,null,"cd01410","SIRT7: Eukaryotic and prokaryotic group "]
["hypothetical protein","mlr6215",5033545,5034090,null,"+",181,13475192]
["COG2079R, hypothetical protein","mlr6217",5034195,5035535,null,"+",446,13475193,null,"COG2079","pfam03972","MmgE/PrpD family. This family includes 2","COG2079","Uncharacterized protein involved in prop"]
[{"$nulls":4},"#",15669511,"Methanococcus_jannaschii","/am/ftp-genomes/Bacteria/Methanococcus_jannaschii/NC_000909.ptt"]
["COG1082G, hypothetical protein","MJ1311",1256404,1257285,null,"+",293,15669501,null,"COG1082","pfam01261","Xylose isomerase-like TIM barrel. This T","COG1082","Sugar phosphate isomerases/epimerases [C"]
["COG0731C, hypothetical protein","MJ1312",1257316,1258281,null,"+",321,15669502,null,"COG0731","pfam04055","Radical SAM superfamily. Radical SAM pro","COG0731","Fe-S oxidoreductases [Energy production "]
["COG1679S, hypothetical protein","MJ1313",1258383,1259594,null,"+",403,15669503,null,"COG1679","pfam04412","Protein of unknown function (DUF521). Fa","COG1679","Predicted aconitase [General function pr"]
["COG1270H, cobalamin biosynthesis protein","MJ1314",1259594,1260517,null,"+",307,15669504,null,"COG1270","pfam03186","CobD/Cbib protein. This family includes ","COG1270","Cobalamin biosynthesis protein CobD/CbiB"]
["COG1341R, hypothetical protein","MJ1315",1260502,1261587,null,"+",361,15669505,null,"COG1341","pfam06807,pfam08160,cd01983","Pre-mRNA cleavage complex II protein Clp ; NUC156 domain. This C terminal domain is ; The Fer4_NifH superfamily contains a var","COG1341","Predicted GTPase or GTP-binding protein "]
["COG1531S, hypothetical protein","MJ1316",1261589,1261831,null,"+",80,15669506,null,"COG1531","pfam04457","Protein of unknown function (DUF504). Fa","COG1531","Uncharacterized protein conserved in arc"]
["COG0477GEPR, hypothetical protein","MJ1317",1261814,1263010,null,"-",398,15669507,null,"COG2211","cd06174","The Major Facilitator Superfamily (MFS) ","COG2270","Permeases of the major facilitator super"]
["COG1750R, hypothetical protein","MJ1318",1263055,1264863,null,"-",602,15669508,null,"COG1750","pfam05362,cd01994,pfam02463","Lon protease (S16) C-terminal proteolyti ; This is a subfamily of Adenine nucleotid ; RecF/RecN/SMC N terminal domain. This do","COG1750","Archaeal serine proteases [General funct"]
["COG0733R, sodium-dependent transporter","MJ1319",1264955,1266433,null,"+",492,15669509,null,"COG0733","pfam00209","Sodium:neurotransmitter symporter family","COG0733","Na+-dependent transporters of the SNF fa"]
["COG1412R, hypothetical protein","MJ1320",1267794,1268189,null,"-",131,15669510,null,"COG1412","smart00670","Large family of predicted nucleotide-bin","COG1412","Uncharacterized proteins of PilT N-term."]
["COG1431J, hypothetical protein","MJ1321",1268210,1270351,null,"-",713,15669511,"PIWI domain containing protein","COG1431","pfam02171,cd01462","Piwi domain. This domain is found in the ; VWA YIEM type: Von Willebrand factor typ","COG1431","Argonaute homolog, implicated in RNA met"]
["COG0419L, purine NTPase","MJ1322",1270370,1273387,null,"-",1005,15669512,null,"COG0419","pfam02463,cd03240","RecF/RecN/SMC N terminal domain. This do ; The catalytic domains of Rad50 are simil","COG0419","ATPase involved in DNA repair [DNA repli"]
["COG0420L, DNA repair protein RAD32 (rad32)","MJ1323",1273384,1274484,null,"-",366,15669513,null,"COG0420","pfam00149","Calcineurin-like phosphoesterase. This f","COG0420","DNA repair exonuclease [DNA replication,"]
["COG1763H, molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)","MJ1324",1274579,1275283,null,"+",234,15669514,null,"COG1763","pfam03205,pfam04060","Molybdopterin guanine dinucleotide synth ; Putative Fe-S cluster. This family inclu","COG1763,COG2878","Molybdopterin-guanine dinucleotide biosy ; Predicted NADH:ubiquinone oxidoreductase"]
["COG0640K, cadmium resistance protein","MJ1325",1275423,1275692,null,"+",89,15669515,null,"COG0640","smart00418","helix_turn_helix, Arsenical Resistance O","COG0640","Predicted transcriptional regulators [Tr"]
["COG1163R, GTP1/Obg family GTP-binding protein","MJ1326",1275892,1277067,null,"+",391,15669516,null,"COG1163","cd01896,cd01666","The developmentally regulated GTP-bindin ; TGS_DRG_C:   DRG (developmentally regula","COG1163","Predicted GTPase [General function predi"]
["hypothetical protein","MJ1327",1277076,1277813,null,"+",245,15669517,{"$nulls":4},"COG3055","Uncharacterized protein conserved in bac"]
["COG0827L, adenine-specific DNA methylase","MJ1327a",1277800,1278633,null,"+",277,15669894,null,"COG0827","cd02440","S-adenosylmethionine-dependent methyltra","COG0827","Adenine-specific DNA methylase [DNA repl"]
["COG1002V, modification methylase, type II R/M system","MJ1328",1278476,1279372,null,"+",298,15669518]
["COG0024J, methionine aminopeptidase","MJ1329",1279377,1280261,null,"+",294,15669519,null,"COG0024","cd01088","Methionine Aminopeptidase 2. E.C. 3.4.11","COG0024","Methionine aminopeptidase [Translation, "]
["COG1267I, hypothetical protein","MJ1330",1280407,1280790,null,"+",127,15669520,null,"COG1267","pfam04608,cd05058","Phosphatidylglycerophosphatase A. This f ; PTKc_Met_Ron: Protein Tyrosine Kinase (P","COG1267","Phosphatidylglycerophosphatase A and rel"]
[{"$nulls":4},"#",20094747,"Methanopyrus_kandleri","/am/ftp-genomes/Bacteria/Methanopyrus_kandleri/NC_003551.ptt"]
["Terpene cyclase/mutase family protein","MK1301",1308525,1310213,null,"-",562,20094737,null,null,"cd00688","This group contains class II terpene cyc","COG1657","Squalene cyclase [Lipid metabolism]"]
["hypothetical protein","MK1302",1311974,1312216,null,"+",80,20094738]
["hypothetical protein","MK1303",1312185,1313237,null,"-",350,20094739,null,null,"pfam03979","Sigma-70 factor, region 1.1. Region 1.1 ","COG3941","Mu-like prophage protein [General functi"]
["hypothetical protein","MK1304",1313373,1314599,null,"-",408,20094740,null,null,"pfam00122,pfam04684","E1-E2 ATPase. ","COG1914","Mn2+ and Fe2+ transporters of the NRAMP "]
["hypothetical protein","MK1305",1314596,1316125,null,"-",509,20094741]
["COG0438M, glycosyltransferase","MK1306",1316132,1317607,null,"-",491,20094742,null,"COG0438","cd03813","This family is most closely related to t","COG0438,COG4985","Glycosyltransferase [Cell envelope bioge ; ABC-type phosphate transport system, aux"]
["COG1708R, DNA polymerase beta family nucleotidyltransferase","MK1307",1319237,1319530,null,"-",97,20094743,{"$nulls":4},"COG1708","Predicted nucleotidyltransferases [Gener"]
["P-loop ATPase","MK1308",1319573,1321492,null,"-",639,20094744]
["hypothetical protein","MK1309",1322642,1323265,null,"+",207,20094745,null,null,"pfam07913","Protein of unknown function (DUF1678). T"]
["COG1343L, hypothetical protein","MK1310",1324335,1324640,null,"-",101,20094746,"CRISPR-associated protein Cas2","COG1343","pfam02647","Uncharacterized ACR, COG1343. ","COG1343","CRISPR-associated protein Cas2 [Defense "]
["COG1431J, the argonaute protein, implicated in translation or RNA processing","MK1311",1324652,1326787,null,"-",711,20094747,"PIWI domain containing protein","COG1431","cd04659,CHL00180","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; LysR transcriptional regulator; Provisio","COG1431","Argonaute homolog, implicated in RNA met"]
["COG1518L, hypothetical protein","MK1312",1326771,1327766,null,"-",331,20094748,"CRISPR-associated protein Cas1","COG1518","pfam01867","Protein of unknown function DUF48. This ","COG1518","CRISPR-associated protein Cas1 [Defense "]
["hypothetical protein","MK1313",1329452,1330918,null,"-",488,20094749,null,null,"pfam05038","Cytochrome Cytochrome b558 alpha-subunit","COG0010","Arginase/agmatinase/formimionoglutamate "]
["COG1353R, DNA-dependent DNA polymerase","MK1314",1331274,1334015,null,"+",913,20094750,null,"COG1418","cd00077","Metal dependent phosphohydrolases with c","COG1353","Predicted CRISPR-associated polymerase ["]
["COG1421L, hypothetical protein","MK1315",1334017,1334541,null,"+",174,20094751,null,"COG1421","pfam03750","Protein of unknown function (DUF310). Th","COG1421","CRISPR system related protein [Defense m"]
["COG1337L, hypothetical protein","MK1316",1334554,1335609,null,"+",351,20094752,null,"COG1337","pfam03787","RAMP superfamily. The molecular function","COG1337","CRISPR system related protein, RAMP supe"]
["hypothetical protein","MK1317",1335611,1336702,null,"+",363,20094753,null,"COG1567","pfam09700,pfam08902","CRISPR-associated protein (Cas_Cmr3). CR ; Domain of unknown function (DUF1848). Th","COG1567","CRISPR system related protein, RAMP supe"]
["hypothetical protein","MK1318",1336699,1338027,null,"+",442,20094754,null,null,"pfam09670","CRISPR-associated protein (Cas_Cas02710)","COG4192","Signal transduction histidine kinase reg"]
["hypothetical protein","MK1319",1338024,1339115,null,"+",363,20094755,null,"COG1332","pfam03787","RAMP superfamily. The molecular function","COG1332","CRISPR system related protein, RAMP supe"]
["COG0726G, xylanase/chitin deacetylase family protein","MK1320",1339214,1339987,null,"+",257,20094756,null,"COG0726","pfam01522","Polysaccharide deacetylase. This domain ","COG0726","Predicted xylanase/chitin deacetylase [C"]
["hypothetical protein","MK1321",1340038,1340202,null,"+",54,20094757]
[{"$nulls":4},"#",20089856,"Methanosarcina_acetivorans","/am/ftp-genomes/Bacteria/Methanosarcina_acetivorans/NC_003552.ptt"]
["COG0284F, orotidine 5'-phosphate decarboxylase","MA0969",1155555,1156286,null,"+",243,20089846,null,"COG0284","cd04725","Orotidine 5'-phosphate decarboxylase (OD","COG0284","Orotidine-5'-phosphate decarboxylase [Nu"]
["COG2202T,COG2203T,COG3920T, sensory transduction histidine kinase","MA0970",1157294,1159786,null,"+",830,20089847,null,"COG2202","pfam07568,pfam01590,pfam00989,pfam02518","Histidine kinase. This is the dimerisati ; GAF domain. Domain present in phytochrom ; PAS fold. The PAS fold corresponds to th ; Histidine kinase-, DNA gyrase B-, and HS","COG3920,COG2203,COG2202","Signal transduction histidine kinase [Si ; FOG: GAF domain [Signal transduction mec ; FOG: PAS/PAC domain [Signal transduction"]
["COG0735P, ferric uptake regulation protein","MA0971",1160210,1160659,null,"-",149,20089848,null,"COG0735","pfam01475","Ferric uptake regulator family. This fam","COG0735","Fe2+/Zn2+ uptake regulation proteins [In"]
["COG0376P, catalase/peroxidase","MA0972",1160900,1163110,null,"+",736,20089849,null,"COG0376","cd00649,cd00649","Catalase-peroxidases. This is a subgroup ; Catalase-peroxidases. This is a subgroup","COG0376","Catalase (peroxidase I) [Inorganic ion t"]
["COG3328L, hypothetical protein","MA0973",1163445,1164731,null,"+",428,20089850,null,null,"pfam10551","MULE transposase domain. This domain was","COG3328","Transposase and inactivated derivatives "]
["COG0389L, hypothetical protein","MA0974",1165169,1165495,null,"+",108,20089851,null,"COG0389","cd03586","Pol_IV_kappa, a member of the Y-family o","COG0389","Nucleotidyltransferase/DNA polymerase in"]
["COG3259C, coenzyme F420 hydrogenase, subunit alpha","MA0975",1165692,1167062,null,"+",456,20089852,null,"COG3259","pfam00374","Nickel-dependent hydrogenase. ","COG3259","Coenzyme F420-reducing hydrogenase, alph"]
["COG0680C, hydrogenase maturation protease","MA0976",1167069,1167548,null,"+",159,20089853,null,"COG0680","cd06064","Endopeptidases belonging to F420-reducin","COG0680","Ni,Fe-hydrogenase maturation factor [Ene"]
["COG1941C, coenzyme F420 hydrogenase, subunit gamma","MA0977",1167553,1168341,null,"+",262,20089854,null,"COG1941","pfam01058,pfam00037","NADH ubiquinone oxidoreductase, 20 Kd su ; 4Fe-4S binding domain. Superfamily inclu","COG1941","Coenzyme F420-reducing hydrogenase, gamm"]
["COG1035C, coenzyme F420-reducing hydrogenase subunit beta","MA0978",1168352,1169227,null,"+",291,20089855,null,"COG1035","pfam04432,pfam04422","Coenzyme F420 hydrogenase/dehydrogenase, ; Coenzyme F420 hydrogenase/dehydrogenase,","COG1035","Coenzyme F420-reducing hydrogenase, beta"]
["COG0413H, hypothetical protein","MA0979",1169485,1170885,null,"-",466,20089856,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG3972","Argonaute homolog, implicated in RNA met ; Superfamily I DNA and RNA helicases [Gen"]
["hypothetical protein","MA0980",1170887,1172284,null,"-",465,20089857,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["COG2026JD, hypothetical protein","MA0981",1172985,1173254,null,"+",89,20089858,null,"COG2026","pfam05016","Plasmid stabilisation system protein. Me","COG2026","Cytotoxic translational repressor of tox"]
["COG1487R, Pin protein","MA0982",1173873,1174226,null,"+",117,20089859,null,"COG1487","pfam01850","PIN domain. This PIN (PilT N terminus) d","COG1487","Predicted nucleic acid-binding protein, "]
["hypothetical protein","MA0983",1174451,1174831,null,"+",126,20089860]
["COG3385L, hypothetical protein","MA0984",1175397,1176548,null,"+",383,20089861,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3385","FOG: Transposase and inactivated derivat"]
["hypothetical protein","MA0985",1177597,1178037,null,"-",146,20089862,null,null,"pfam10577","Uncharacterised protein family UPF0560. ","COG5000","Signal transduction histidine kinase inv"]
["COG3369S, hypothetical protein","MA0986",1178383,1179108,null,"+",241,20089863,null,"COG3369","pfam06902,pfam09360,pfam09360","Protein of unknown function (DUF1271). T ; Iron-binding zinc finger CDGSH type. The ; Iron-binding zinc finger CDGSH type. The","COG3369,COG3369","Zinc finger domain containing protein (C ; Zinc finger domain containing protein (C"]
["COG1994R, hypothetical protein","MA0987",1179874,1180614,null,"+",246,20089864,null,"COG1994","cd06160","Uncharacterized homologs of Site-2 prote","COG1994","Zn-dependent proteases [General function"]
["COG0727R, hypothetical protein","MA0988",1180735,1181337,null,"-",200,20089865,null,"COG0727","pfam03692,cd01109","Uncharacterised protein family (UPF0153) ; Putative helix-turn-helix (HTH) MerR-lik","COG0727,COG3853","Predicted Fe-S-cluster oxidoreductase [G ; Uncharacterized protein involved in tell"]
["COG0789K,COG4978KT, MerR family transcriptional regulator","MA0989",1181616,1182470,null,"+",284,20089866,null,"COG0789","cd01107,pfam06445","Helix-turn-helix (HTH) multidrug-efflux  ; Bacterial transcription activator, effec","COG4978,COG0789","Transcriptional regulator, effector-bind ; Predicted transcriptional regulators [Tr"]
[{"$nulls":4},"#",124262648,"Methylibium_petroleiphilum_PM1","/am/ftp-genomes/Bacteria/Methylibium_petroleiphilum_PM1/NC_008826.ptt"]
["hypothetical protein","Mpe_B0094",82580,82876,null,"+",98,124262638]
["COG1396K, hypothetical protein","Mpe_B0095",82915,84105,null,"+",396,124262639,null,null,"pfam00496","Bacterial extracellular solute-binding p"]
["hypothetical protein","Mpe_B0096",84218,84877,null,"-",219,124262640,null,null,"cd06302,cd00501,pfam08174","Periplasmic binding domain of autoinduce ; Pyroglutamyl peptidase (PGP) type I, als ; Fungal domain of unknown function (DUF17"]
["hypothetical protein","Mpe_B0097",85020,85811,null,"+",263,124262641,null,null,"pfam01266","FAD dependent oxidoreductase. This famil","COG0441","Threonyl-tRNA synthetase [Translation, r"]
["COG0286V,COG0827L, hypothetical protein","Mpe_B0098",85954,87321,null,"+",455,124262642,null,"COG0827","pfam02384","N-6 DNA Methylase. Restriction-modificat","COG0286","Type I restriction-modification system m"]
["COG5377L, hypothetical protein","Mpe_B0099",87437,88513,null,"-",358,124262643,null,"COG5377","pfam09588","YqaJ viral recombinase family. This prot","COG5377","Phage-related protein, predicted endonuc"]
["hypothetical protein","Mpe_B0100",88565,88828,null,"-",87,124262644]
["hypothetical protein","Mpe_B0101",89459,89848,null,"-",129,124262645]
["COG4889R, adenine specific DNA methyltransferase, putative","Mpe_B0102",89940,94787,null,"+",1615,124262646,null,"COG4889","pfam04851,pfam00271,pfam02384","Type III restriction enzyme, res subunit ; Helicase conserved C-terminal domain. Th ; N-6 DNA Methylase. Restriction-modificat","COG4889","Predicted helicase [General function pre"]
["hypothetical protein","Mpe_B0103",94925,96310,null,"+",461,124262647,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["COG1431J, hypothetical protein","Mpe_B0104",96307,97728,null,"+",473,124262648,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","Mpe_B0105",97795,98226,null,"-",143,124262649]
["hypothetical protein","Mpe_B0106",98385,98591,null,"+",68,124262650,null,null,"pfam03405","Fatty acid desaturase. "]
["hypothetical protein","Mpe_B0107",98651,98908,null,"+",85,124262651]
["hypothetical protein","Mpe_B0108",98890,99387,null,"-",165,124262652]
["hypothetical protein","Mpe_B0109",99380,100009,null,"-",209,124262653,null,null,"pfam07794","Protein of unknown function (DUF1633). T"]
["hypothetical protein","Mpe_B0110",100056,100274,null,"-",72,124262654]
["hypothetical protein","Mpe_B0111",100380,101297,null,"-",305,124262655,null,null,"pfam09731","Mitochondrial inner membrane protein. Mi","COG3372","Predicted nuclease of restriction endonu"]
["hypothetical protein","Mpe_B0112",101317,101631,null,"-",104,124262656,{"$nulls":4},"COG2176","DNA polymerase III, alpha subunit (gram-"]
["hypothetical protein","Mpe_B0113",101843,102469,null,"+",208,124262657]
["hypothetical protein","Mpe_B0114",102418,103434,null,"-",338,124262658,null,null,"PHA00431","internal virion protein C","COG5561","Predicted metal-binding protein [Functio"]
[{"$nulls":4},"#",166364682,"Microcystis_aeruginosa_NIES_843","/am/ftp-genomes/Bacteria/Microcystis_aeruginosa_NIES_843/NC_010296.ptt"]
["COG0596R, alpha/beta fold family hydrolase","MAE_19310",1729298,1730191,null,"-",297,166364672,null,"COG0596","pfam00561","alpha/beta hydrolase fold. This catalyti","COG0596","Predicted hydrolases or acyltransferases"]
["COG0596R, alpha/beta fold family hydrolase","MAE_19320",1730250,1731092,null,"+",280,166364673,null,"COG0596","pfam00561","alpha/beta hydrolase fold. This catalyti","COG0596","Predicted hydrolases or acyltransferases"]
["COG4783R, peptidase M48","MAE_19330",1731093,1731455,null,"-",120,166364674,null,"COG4783","pfam01435","Peptidase family M48. ","COG4783","Putative Zn-dependent protease, contains"]
["COG0675L, transposase","MAE_19340",1731466,1732752,null,"-",428,166364675,null,"COG0675","pfam01385,pfam07282","Probable transposase. This family includ ; Putative transposase DNA-binding domain.","COG0675","Transposase and inactivated derivatives "]
["hypothetical protein","MAE_19350",1732913,1733065,null,"-",50,166364676]
["hypothetical protein","MAE_19360",1733095,1733379,null,"-",94,166364677]
["COG0583K, transcriptional regulator","MAE_19370",1733901,1734896,null,"+",331,166364678,null,"COG0583","CHL00180","LysR transcriptional regulator; Provisio","COG0583","Transcriptional regulator [Transcription"]
["COG2856E, hypothetical protein","MAE_19380",1734933,1735559,null,"-",208,166364679,null,"COG2856","pfam06114","Domain of unknown function (DUF955). Fam","COG2856","Predicted Zn peptidase [Amino acid trans"]
["COG1396K, transcriptional regulator","MAE_19390",1735604,1735960,null,"-",118,166364680,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG1813,COG1453","Predicted transcription factor, homolog  ; Predicted oxidoreductases of the aldo/ke"]
["hypothetical protein","MAE_19400",1736118,1736948,null,"+",276,166364681,"RecB family nuclease, COG1468 subfamily "]
["COG1431J, hypothetical protein","MAE_19410",1736952,1739195,null,"+",747,166364682,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","MAE_19420",1739301,1739465,null,"-",54,166364683]
["COG1523G, isoamylase precursor","MAE_19430",1739561,1741930,null,"+",789,166364684,null,"COG1523","cd02852,pfam00128,cd03220","Isoamylase N-terminus domain. Isoamylase ; Alpha amylase, catalytic domain. Alpha a ; ABC_KpsT_Wzt   The KpsT/Wzt ABC transpor","COG1523","Type II secretory pathway, pullulanase P"]
["COG0398S, hypothetical protein","MAE_19440",1742103,1742753,null,"+",216,166364685,null,"COG0398","pfam09335,pfam07379","SNARE associated Golgi protein. This is  ; Protein of unknown function (DUF1494). T","COG0398","Uncharacterized conserved protein [Funct"]
["putative transposase","MAE_19450",1742898,1743194,null,"+",98,166364686,null,null,"pfam05565","Siphovirus Gp157. This family contains b"]
["COG0331I, malonyl coenzyme A-acyl carrier protein transacylase","MAE_19460",1744192,1745118,null,"-",308,166364687,null,"COG0331","pfam00698","Acyl transferase domain. ","COG0331","(acyl-carrier-protein) S-malonyltransfer"]
["COG0332I, 3-oxoacyl-[acyl-carrier-protein] synthase III","MAE_19470",1745278,1746279,null,"-",333,166364688,null,"COG0332","cd00830","Ketoacyl-acyl carrier protein synthase I","COG0332","3-oxoacyl-[acyl-carrier-protein]"]
["COG0416I, putative glycerol-3-phosphate acyltransferase PlsX","MAE_19480",1746470,1747480,null,"-",336,166364689,null,"COG0416","pfam02504","Fatty acid synthesis protein. The plsX g","COG0416","Fatty acid/phospholipid biosynthesis enz"]
["COG2027M, putative peptidase","MAE_19490",1747675,1748967,null,"+",430,166364690,null,"COG2027","pfam02113,pfam02113,pfam04986","D-Ala-D-Ala carboxypeptidase 3 (S13) fam ; D-Ala-D-Ala carboxypeptidase 3 (S13) fam ; Putative transposase. Transposases are n","COG2027","D-alanyl-D-alanine carboxypeptidase (pen"]
["hypothetical protein","MAE_19500",1749017,1749301,null,"+",94,166364691,null,null,"pfam04365","Protein of unknown function (DUF497). ","COG2929","Uncharacterized protein conserved in bac"]
["hypothetical protein","MAE_19510",1749288,1749551,null,"+",87,166364692]
[{"$nulls":4},"#",119855142,"Mycobacterium_KMS","/am/ftp-genomes/Bacteria/Mycobacterium_KMS/NC_008703.ptt"]
["COG0526OC, redoxin domain-containing protein","Mkms_5746",254038,254604,null,"+",188,119855132,null,"COG0526","cd02966","TlpA-like family; composed of  TlpA, Res","COG0526","Thiol-disulfide isomerase and thioredoxi"]
["COG0318IQ,COG1020Q, AMP-dependent synthetase and ligase","Mkms_5747",254725,257220,null,"-",831,119855133,null,"COG1020","pfam00501,pfam01757,pfam00550","AMP-binding enzyme. ","COG0318,COG1835","Acyl-CoA synthetases (AMP-forming)/AMP-a ; Predicted acyltransferases [Lipid metabo"]
["COG3842E, ABC transporter related","Mkms_5748",257217,258311,null,"-",364,119855134,null,"COG3842","cd03259","ABC Carbohydrate and Solute Transporters","COG3842","ABC-type spermidine/putrescine transport"]
["COG1178P, binding-protein-dependent transport systems inner membrane component","Mkms_5749",258308,259909,null,"-",533,119855135,null,"COG1178","cd06261,cd06261","Transmembrane subunit (TM) found in Peri ; Transmembrane subunit (TM) found in Peri","COG1178","ABC-type Fe3+ transport system, permease"]
["COG1840P, extracellular solute-binding protein","Mkms_5750",259923,260948,null,"-",341,119855136,null,"COG1840","pfam01547","Bacterial extracellular solute-binding p","COG1840","ABC-type Fe3+ transport system, periplas"]
["COG0491R,COG0607P, beta-lactamase domain-containing protein","Mkms_5751",261014,262393,null,"-",459,119855137,null,"COG0491","cd00158,pfam00753,cd00158","Rhodanese Homology Domain (RHOD); an alp ; Metallo-beta-lactamase superfamily. ","COG0491,COG0607","Zn-dependent hydrolases, including glyox ; Rhodanese-related sulfurtransferase [Ino"]
["COG0730R, hypothetical protein","Mkms_5752",262637,263515,null,"+",292,119855138,null,"COG0730","pfam01925","Domain of unknown function DUF81. This i","COG0730","Predicted permeases [General function pr"]
["COG1937S, hypothetical protein","Mkms_5753",263538,263852,null,"+",104,119855139,null,"COG1937","pfam02583","Uncharacterised BCR, COG1937. ","COG1937","Uncharacterized protein conserved in bac"]
["putative alkylmercury lyase","Mkms_5754",263998,264309,null,"-",103,119855140,null,null,"cd02972","DsbA family; consists of DsbA and DsbA-l"]
["COG3328L, transposase, mutator type","Mkms_5755",264565,265800,null,"-",411,119855141,null,"COG3328","pfam00872","Transposase, Mutator family. ","COG3328","Transposase and inactivated derivatives "]
["hypothetical protein","Mkms_5756",266535,267968,null,"-",477,119855142,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3448","CBS-domain-containing membrane protein ["]
["hypothetical protein","Mkms_5757",267965,269275,null,"-",436,119855143,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["hypothetical protein","Mkms_5758",269467,269691,null,"+",74,119855144,null,null,"pfam09954","Uncharacterized protein conserved in bac"]
["hypothetical protein","Mkms_5759",269888,270070,null,"+",60,119855145,null,null,"pfam00933","Glycosyl hydrolase family 3 N terminal d"]
["COG2184D, filamentation induced by cAMP protein Fic","Mkms_5760",270036,270713,null,"+",225,119855146,null,"COG2184","pfam02661","Fic/DOC family. This family consists of ","COG2184","Protein involved in cell division [Cell "]
["hypothetical protein","Mkms_5762",271154,272122,null,"+",322,119855147,null,null,"pfam04683","Adhesion regulating molecule conserved r"]
["COG0791M, NLP/P60 protein","Mkms_5763",272156,273244,null,"+",362,119855148,null,"COG0791","pfam00877,PHA00370","NlpC/P60 family. The function of this do ; attachment protein","COG0791,COG4907","Cell wall-associated hydrolases (invasio ; Predicted membrane protein [Function unk"]
["hypothetical protein","Mkms_5764",273531,275447,null,"+",638,119855149,null,null,"pfam10774,pfam07462,pfam04625,cd06324","Biofilm regulator BssS. BssS (also known ; Merozoite surface protein 1 (MSP1) C-ter ; DEC-1 protein, N terminal region. The de ; This group includes the periplasmic suga","COG5178,COG3883,COG1053","U5 snRNP spliceosome subunit [RNA proces ; Uncharacterized protein conserved in bac ; Succinate dehydrogenase/fumarate reducta"]
["hypothetical protein","Mkms_5765",275510,275818,null,"+",102,119855150]
["hypothetical protein","Mkms_5766",275805,276113,null,"+",102,119855151]
["PPE protein","Mkms_5767",276118,277788,null,"+",556,119855152,null,null,"pfam07415","Gammaherpesvirus latent membrane protein","COG3416,COG5180","Uncharacterized protein conserved in bac ; Protein interacting with poly(A)-binding"]
[{"$nulls":4},"#",147677058,"Pelotomaculum_thermopropionicum_SI","/am/ftp-genomes/Bacteria/Pelotomaculum_thermopropionicum_SI/NC_009454.ptt"]
["hypothetical protein","PTH_0713",709820,710272,null,"+",150,147677048]
["hypothetical protein","PTH_0714",710286,711143,null,"+",285,147677049,null,null,"pfam03787","RAMP superfamily. The molecular function"]
["COG0863L,COG1743L, hypothetical protein","PTH_0715",711209,713866,null,"+",885,147677050,null,"COG0863","pfam01555,pfam01555","DNA methylase. Members of this family ar ; DNA methylase. Members of this family ar","COG1743,COG0863","Adenine-specific DNA methylase containin ; DNA modification methylase [DNA replicat"]
["COG0553KL, DNA/RNA helicase","PTH_0716",713892,716705,null,"+",937,147677051,null,"COG0553","cd00079,smart00487,pfam10037","Helicase superfamily c-terminal domain;  ; DEAD-like helicases superfamily; ","COG0553","Superfamily II DNA/RNA helicases, SNF2 f"]
["hypothetical protein","PTH_0717",716702,718651,null,"+",649,147677052,null,null,"pfam08665,pfam07926,pfam00006","PglZ domain. This family is a member of  ; TPR/MLP1/MLP2-like protein. The sequence ; ATP synthase alpha/beta family, nucleoti","COG0624","Acetylornithine deacetylase/Succinyl-dia"]
["COG2801L, transposase and inactivated derivatives","PTH_0718",720202,720918,null,"-",238,147677053,null,"COG2801","pfam00665","Integrase core domain. Integrase mediate","COG2801","Transposase and inactivated derivatives "]
["hypothetical protein","PTH_0719",721091,721234,null,"-",47,147677054]
["COG3328L, transposase and inactivated derivatives","PTH_0720",721509,722687,null,"-",392,147677055,null,"COG3328","pfam00872","Transposase, Mutator family. ","COG3328","Transposase and inactivated derivatives "]
["COG0610V, hypothetical protein","PTH_0721",722917,723135,null,"-",72,147677056,null,null,"cd02877","This conserved domain family includes xy"]
["hypothetical protein","PTH_0722",723198,724472,null,"-",424,147677057,"Rec-like endonuclease fused to uncharacterized N-terminal domain",null,"cd01135","V/A-type ATP synthase (non-catalytic) su","COG4880","Secreted protein containing C-terminal b"]
["hypothetical protein","PTH_0723",724418,726751,null,"-",777,147677058,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","PTH_0724",727629,727964,null,"-",111,147677059,null,null,"smart00670","Large family of predicted nucleotide-bin","COG4956","Integral membrane protein (PIN domain su"]
["COG1396K,COG2856E, hypothetical protein","PTH_0725",727933,729000,null,"-",355,147677060,null,"COG1396","cd00093,pfam06114","Helix-turn-helix XRE-family like protein ; Domain of unknown function (DUF955). Fam","COG2856,COG1396","Predicted Zn peptidase [Amino acid trans ; Predicted transcriptional regulators [Tr"]
["COG1084R, hypothetical protein","PTH_0726",729994,730326,null,"-",110,147677061,null,null,"pfam03029","Conserved hypothetical ATP binding prote","COG3367","Uncharacterized conserved protein [Funct"]
["COG3707T, response regulator","PTH_0727",730641,731222,null,"+",193,147677062,null,"COG3707","smart00448,pfam03861","cheY-homologous receiver domain; CheY re ; ANTAR domain. ANTAR (AmiR and NasR trans","COG3707","Response regulator with putative antiter"]
["COG0174E, glutamine synthetase","PTH_0728",731338,732738,null,"+",466,147677063,null,"COG0174","pfam00120,pfam03951","Glutamine synthetase, catalytic domain.  ; Glutamine synthetase, beta-Grasp domain.","COG0174","Glutamine synthetase [Amino acid transpo"]
["COG0069E, glutamate synthase domain-containing 2","PTH_0729",732902,734479,null,"+",525,147677064,null,"COG1304","cd02808","Glutamate synthase (GltS) FMN-binding do","COG0069","Glutamate synthase domain 2 [Amino acid "]
["COG3707T, response regulator","PTH_0730",734645,735220,null,"+",191,147677065,null,"COG3707","smart00448,pfam03861","cheY-homologous receiver domain; CheY re ; ANTAR domain. ANTAR (AmiR and NasR trans","COG3707","Response regulator with putative antiter"]
["COG0174E, glutamine synthetase","PTH_0731",735255,736367,null,"+",370,147677066,null,"COG0174","pfam00120,pfam03951","Glutamine synthetase, catalytic domain.  ; Glutamine synthetase, beta-Grasp domain.","COG0174","Glutamine synthetase [Amino acid transpo"]
["COG0174E, hypothetical protein","PTH_0732",736415,736699,null,"+",94,147677067,null,"COG0174","pfam06181,cd04666","Protein of unknown function (DUF989). Th ; Members of the Nudix hydrolase superfami","COG0174","Glutamine synthetase [Amino acid transpo"]
["COG0174E, glutamine synthetase","PTH_0733",737002,738333,null,"+",443,147677068,null,"COG0174","pfam00120,pfam03951,pfam10126","Glutamine synthetase, catalytic domain.  ; Glutamine synthetase, beta-Grasp domain. ; Uncharacterized protein, homolog of nitr","COG0174","Glutamine synthetase [Amino acid transpo"]
[{"$nulls":4},"#",146283523,"Pseudomonas_stutzeri_A1501","/am/ftp-genomes/Bacteria/Pseudomonas_stutzeri_A1501/NC_009434.ptt"]
["COG1947I, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase","PST_3186",3433209,3434063,null,"+",284,146283513,null,"COG1947","pfam00288,pfam08544","GHMP kinases N terminal domain. This fam ; GHMP kinases C terminal. This family inc","COG1947","4-diphosphocytidyl-2C-methyl-D-erythrito"]
["COG0462FE, ribose-phosphate pyrophosphokinase","PST_3189",3434381,3435310,null,"+",309,146283514,null,"COG0462","pfam00156","Phosphoribosyl transferase domain. This ","COG0462","Phosphoribosylpyrophosphate synthetase ["]
["COG1825J, 50S ribosomal protein L25/general stress protein Ctc","PST_3190",3435430,3436047,null,"+",205,146283515,null,"COG1825","cd00495","Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5","COG1825","Ribosomal protein L25 (general stress pr"]
["COG0193J, peptidyl-tRNA hydrolase","PST_3191",3436285,3436665,null,"+",126,146283516,null,"COG0193","pfam01195","Peptidyl-tRNA hydrolase. ","COG0193","Peptidyl-tRNA hydrolase [Translation, ri"]
["COG0012J, GTP-dependent nucleic acid-binding protein EngD","PST_3192",3436690,3437790,null,"+",366,146283517,null,"COG0012","cd01900","YchF subfamily.  YchF is a member of the","COG0012","Predicted GTPase, probable translation f"]
["COG0582L, phage integrase family site specific recombinase","PST_3193",3437829,3439196,null,"+",455,146283518,null,"COG0582","cd00801","Bacteriophage P4 integrase. P4-like inte","COG0582","Integrase [DNA replication, recombinatio"]
["COG3177S, fic family protein","PST_3194",3439457,3440518,null,"+",353,146283519,null,"COG3177","pfam02661,pfam01638","Fic/DOC family. This family consists of  ; HxlR-like helix-turn-helix. HxlR, a memb","COG3177","Fic family protein [Function unknown]"]
["COG0553KL, ATP-dependent helicase HEPA","PST_3195",3440515,3443823,null,"+",1102,146283520,null,"COG0553","cd00079,pfam00176,cd00138","Helicase superfamily c-terminal domain;  ; SNF2 family N-terminal domain. This doma ; Phospholipase D. Active site motifs; The","COG0553,COG0513,COG1502","Superfamily II DNA/RNA helicases, SNF2 f ; Superfamily II DNA and RNA helicases [DN ; Phosphatidylserine/phosphatidylglyceroph"]
["COG1002V, hypothetical protein","PST_3196",3443813,3447541,null,"+",1242,146283521,null,"COG1002","pfam02384,pfam02384","N-6 DNA Methylase. Restriction-modificat ; N-6 DNA Methylase. Restriction-modificat","COG1002,COG0286","Type II restriction enzyme, methylase su ; Type I restriction-modification system m"]
["hypothetical protein","PST_3197",3449330,3451201,null,"+",623,146283522,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd01406","Sir2-like: Prokaryotic group of uncharac"]
["piwi domain-containing protein","PST_3198",3451198,3452655,null,"+",485,146283523,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG0582L, integrase","PST_3199",3452660,3453523,null,"-",287,146283524,null,"COG4973","cd00798","XerD and XerC integrases, DNA breaking-r","COG4973","Site-specific recombinase XerC [DNA repl"]
["COG2801L, hypothetical protein","PST_3200",3453940,3454230,null,"+",96,146283525]
["COG3436L, ISPsy5, Orf1","PST_3201",3454227,3454571,null,"+",114,146283526,null,"COG3436","pfam05717","IS66 Orf2 like protein. This protein is ","COG3436","Transposase and inactivated derivatives "]
["COG3436L, ISPpu14, transposase Orf3","PST_3202",3454693,3456231,null,"+",512,146283527,null,null,"pfam03050","Transposase IS66 family. Transposase pro","COG3436","Transposase and inactivated derivatives "]
["hypothetical protein","PST_3203",3456695,3457096,null,"-",133,146283528]
["COG4177E, branched-chain amino acid ABC transporter, permease protein","PST_3204",3457774,3458781,null,"-",335,146283529,null,"COG4177","cd06581","Transmembrane subunit (TM) of Escherichi","COG4177","ABC-type branched-chain amino acid trans"]
["COG0559E, branched-chain amino acid ABC transporter, permease protein","PST_3205",3458784,3459671,null,"-",295,146283530,null,"COG0559","cd06582","Transmembrane subunit (TM) of Escherichi","COG0559","Branched-chain amino acid ABC-type trans"]
["COG0683E, ABC transporter substrate-binding protein","PST_3206",3459741,3460793,null,"-",350,146283531,null,"COG0683","cd06327","Periplasmic solute-binding domain of act","COG0683","ABC-type branched-chain amino acid trans"]
["COG0410E, branched-chain amino acid ABC transporter, ATP-binding protein","PST_3207",3461030,3461746,null,"-",238,146283532,null,"COG0410","cd03224","LivF (TM1139) is part of the LIV-I bacte","COG0410","ABC-type branched-chain amino acid trans"]
["COG0411E, branched-chain amino acid transport protein BraF","PST_3208",3461743,3462519,null,"-",258,146283533,null,"COG0411","cd03219","The Mj1267/LivG ABC transporter subfamil","COG0411","ABC-type branched-chain amino acid trans"]
[{"$nulls":4},"#",18976909,"Pyrococcus_furiosus","/am/ftp-genomes/Bacteria/Pyrococcus_furiosus/NC_003413.ptt"]
["hypothetical protein","PF0527",545022,545363,null,"+",113,18976899,null,null,"cd00615","Ornithine decarboxylase family. This fam"]
["COG1122P, cobalt transport ATP-binding protein","PF0528",545343,546152,null,"-",269,18976900,null,"COG1122","cd03225","Domain I of the ABC component of a cobal","COG1122","ABC-type cobalt transport system, ATPase"]
["COG0619P, hypothetical protein","PF0529",546149,546802,null,"-",217,18976901,null,"COG0619","pfam02361","Cobalt transport protein. This family co","COG0619","ABC-type cobalt transport system, permea"]
["hypothetical protein","PF0530",546805,547056,null,"-",83,18976902]
["COG0310P, cobalamin biosynthesis protein m","PF0531",547053,547667,null,"-",204,18976903,null,"COG0310","pfam01891","Cobalt uptake substrate-specific transme","COG0310","ABC-type Co2+ transport system, permease"]
["COG1042C, hypothetical protein","PF0532",547843,549216,null,"+",457,18976904,null,"COG1042","pfam02629,pfam00549,pfam06263","CoA binding domain. This domain has a Ro ; CoA-ligase. This family includes the CoA ; Bacterial FdrA protein. This family cons","COG1042","Acyl-CoA synthetase (NDP forming) [Energ"]
["COG4231C, indolepyruvate ferredoxin oxidoreductase subunit a","PF0533",549209,551149,null,"+",646,18976905,null,"COG4231","cd02008,pfam01855,pfam00037,pfam00037","Thiamine pyrophosphate (TPP) family, IOR ; Pyruvate flavodoxin/ferredoxin oxidoredu ; 4Fe-4S binding domain. Superfamily inclu ; 4Fe-4S binding domain. Superfamily inclu","COG4231","Indolepyruvate ferredoxin oxidoreductase"]
["COG1014C, indolepyruvate oxidoreductase subunit beta","PF0534",551146,551790,null,"+",214,18976906,null,"COG1014","pfam01558","Pyruvate ferredoxin/flavodoxin oxidoredu","COG1014","Pyruvate:ferredoxin oxidoreductase and r"]
["COG1356S, putative transcriptional regulator","PF0535",551853,552281,null,"-",142,18976907,null,"COG1356","cd06171","Sigma70, region (SR) 4 refers to the mos","COG1356","Transcriptional regulator [DNA replicati"]
["COG3316L, transposase","PF0536",552553,553254,null,"-",233,18976908,null,"COG3316","pfam00665","Integrase core domain. Integrase mediate","COG3316","Transposase and inactivated derivatives "]
["COG1431J, hypothetical protein","PF0537",553680,555992,null,"-",770,18976909,"PIWI domain containing protein","COG1431","cd02826,cd02825","Piwi-like: PIWI domain. Domain found in  ; PAZ domain, named PAZ after the proteins","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","PF0538",556872,558308,null,"-",478,18976910,null,null,"pfam07882,smart00044","L-fucose isomerase, second N-terminal do ; Adenylyl- / guanylyl cyclase, catalytic "]
["transposase","PF0538.1n",558412,558870,null,"+",152,33359484,null,null,"cd01662,pfam01673","Ubiquinol oxidase subunit I.  Ubiquinol  ; Herpesvirus putative major envelope glyc"]
["transposase","PF0539",558415,559286,null,"+",290,33359485,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG0441","Threonyl-tRNA synthetase [Translation, r"]
["COG1351F, FAD-dependent thymidylate synthase","PF0540",559431,560165,null,"+",244,18976912,null,"COG1351","pfam02511","Thymidylate synthase complementing prote","COG1351","Predicted alternative thymidylate syntha"]
["COG0024J, methionine aminopeptidase","PF0541",560366,561253,null,"+",295,18976913,null,"COG0024","cd01088","Methionine Aminopeptidase 2. E.C. 3.4.11","COG0024","Methionine aminopeptidase [Translation, "]
["COG0303H, molybdenum cofactor biosynthesis protein","PF0542",561410,562615,null,"+",401,18976914,null,"COG0303","cd00887","MoeA family. Members of this family are ","COG0303","Molybdopterin biosynthesis enzyme [Coenz"]
["COG1977H, molybdopterin converting factor, subunit 1","PF0543",562627,562899,null,"+",90,18976915,null,"COG1977","cd00754","MoaD family. Members of this family are ","COG1977","Molybdopterin converting factor, small s"]
["COG0432S, hypothetical protein","PF0544",562896,563297,null,"-",133,18976916,null,"COG0432","pfam01894","Uncharacterised protein family UPF0047. ","COG0432","Uncharacterized conserved protein [Funct"]
["hypothetical protein","PF0545",563290,563583,null,"-",97,18976917,{"$nulls":4},"COG4987","ABC-type transport system involved in cy"]
["hypothetical protein","PF0546",563543,564835,null,"-",430,18976918,null,null,"cd00245","Coenzyme B12-dependent glutamate mutase ","COG0466","ATP-dependent Lon protease, bacterial ty"]
[{"$nulls":4},"#",94311099,"Ralstonia_metallidurans_CH34","/am/ftp-genomes/Bacteria/Ralstonia_metallidurans_CH34/NC_007973.ptt"]
["COG0768M, penicillin-binding protein, transpeptidase","Rmet_2151",2346608,2348353,null,"+",581,94311089,null,"COG0768","pfam00905,pfam03717","Penicillin binding protein transpeptidas ; Penicillin-binding Protein dimerisation ","COG0768","Cell division protein FtsI/penicillin-bi"]
["COG5009M, penicillin-binding protein 1A","Rmet_2152",2348481,2350802,null,"+",773,94311090,null,"COG5009","pfam00912,pfam00905","Transglycosylase. The penicillin-binding ; Penicillin binding protein transpeptidas","COG5009","Membrane carboxypeptidase/penicillin-bin"]
["COG2197TK, two component LuxR family transcriptional regulator","Rmet_2153",2350869,2351510,null,"+",213,94311091,null,"COG2197","smart00448,cd06170","cheY-homologous receiver domain; CheY re ; C-terminal DNA-binding domain of LuxR-li","COG2197","Response regulator containing a CheY-lik"]
["COG0642T, Hpt sensor hybrid histidine kinase","Rmet_2154",2351526,2353973,null,"+",815,94311092,null,"COG0834","pfam00497,pfam02518,cd00156,pfam00512","Bacterial extracellular solute-binding p ; Histidine kinase-, DNA gyrase B-, and HS ; Signal receiver domain; originally thoug ; His Kinase A (phosphoacceptor) domain. D","COG0642,COG0745","Signal transduction histidine kinase [Si ; Response regulators consisting of a CheY"]
["COG2010C,COG3258C, cytochrome c, class I","Rmet_2155",2354267,2356453,null,"+",728,94311093,null,"COG2010","pfam00034","Cytochrome c. The Pfam entry does not in","COG3258,COG2010,COG2010","Cytochrome c [Energy production and conv ; Cytochrome c, mono- and diheme variants  ; Cytochrome c, mono- and diheme variants "]
["hypothetical protein","Rmet_2156",2357123,2357656,null,"+",177,94311094,null,null,"pfam08003","Protein of unknown function (DUF1698). T"]
["hypothetical protein","Rmet_2157",2357720,2358049,null,"+",109,94311095,null,null,"pfam06052","3-hydroxyanthranilic acid dioxygenase. I","COG2098","Uncharacterized protein conserved in arc"]
["hypothetical protein","Rmet_2158",2358094,2358663,null,"+",189,94311096]
["COG1396K, hypothetical protein","Rmet_2159",2358807,2359403,null,"+",198,94311097,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG1396","Predicted transcriptional regulators [Tr"]
["hypothetical protein","Rmet_2160",2359623,2360255,null,"+",210,94311098,null,null,"pfam03047","COMC family. This family consists exclus"]
["hypothetical protein","Rmet_2161",2360306,2361757,null,"-",483,94311099,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","Rmet_2162",2361754,2363073,null,"-",439,94311100,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["COG0488R,COG1396K, XRE family transcriptional regulator","Rmet_2163",2363695,2365827,null,"+",710,94311101,null,"COG1396","pfam01381,cd01854","Helix-turn-helix. This large family of D ; YjeQ/EngC.  YjeQ (YloQ in Bacillus subti","COG1813,COG4181","Predicted transcription factor, homolog  ; Predicted ABC-type transport system invo"]
["COG4928R, KAP P-loop","Rmet_2164",2365944,2367812,null,"+",622,94311102,null,"COG4928","pfam07693","KAP family P-loop domain. The KAP (after","COG4928","Predicted P-loop ATPase [General functio"]
["hypothetical protein","Rmet_2165",2367812,2368684,null,"+",290,94311103,null,null,"pfam01137","RNA 3'-terminal phosphate cyclase. RNA c"]
["COG0603R, hypothetical protein","Rmet_2166",2368681,2369940,null,"+",419,94311104,null,"COG0603","cd01995","ExsB is a transcription regulator relate","COG0603,COG0367","Predicted PP-loop superfamily ATPase [Ge ; Asparagine synthase (glutamine-hydrolyzi"]
["COG0084L, TatD-related deoxyribonuclease","Rmet_2167",2369937,2370686,null,"+",249,94311105,null,"COG0084","pfam01026","TatD related DNase. This family of prote","COG0084","Mg-dependent DNase [DNA replication, rec"]
["hypothetical protein","Rmet_2168",2370835,2371083,null,"+",82,94311106,{"$nulls":4},"COG3677","Transposase and inactivated derivatives "]
["hypothetical protein","Rmet_2169",2371388,2372035,null,"-",215,94311107]
["hypothetical protein","Rmet_2170",2372325,2372993,null,"-",222,94311108,{"$nulls":4},"COG2989","Uncharacterized protein conserved in bac"]
["hypothetical protein","Rmet_2171",2372993,2375995,null,"-",1000,94311109,null,null,"pfam07111","Alpha helical coiled-coil rod protein (H"]
[{"$nulls":4},"#",16519675,"Rhizobium_NGR234","/am/ftp-genomes/Bacteria/Rhizobium_NGR234/NC_000914.ptt"]
["Y4bH","NGR234_028",28513,28788,null,"+",91,16519665]
["Y4bI","NGR234_029",28860,29276,null,"+",138,16519666,{"$nulls":4},"COG0617","tRNA nucleotidyltransferase/poly(A) poly"]
["Y4bJ","NGR234_030",29392,31284,null,"+",630,16519667,null,null,"pfam00089,pfam10667","Trypsin. ","COG0265,COG4328","Trypsin-like serine proteases, typically ; Predicted nuclease (RNAse H fold) [Gener"]
["Y4bK","NGR234_031",31625,32293,null,"+",222,16519668,null,null,"pfam09814","Uncharacterized conserved protein (DUF23"]
["Y4bL","NGR234_032",32641,34191,null,"+",516,16519669,null,null,"pfam00665,pfam08281","Integrase core domain. Integrase mediate ; Sigma-70, region 4. Region 4 of sigma-70","COG4584,COG4584","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
["Y4bM","NGR234_033",34188,34979,null,"+",263,16519670,null,null,"pfam01695,pfam08483","IstB-like ATP binding protein. This prot ; IstB-like ATP binding N-terminal. This b","COG1484","DNA replication protein [DNA replication"]
["Y4bN","NGR234_034",35278,36573,null,"+",431,16519671,null,null,"pfam00082","Subtilase family. Subtilases are a famil","COG1404","Subtilisin-like serine proteases [Posttr"]
["Y4bO","NGR234_035",36646,38466,null,"+",606,16519672,null,null,"pfam01745","Isopentenyl transferase. Isopentenyl tra"]
["Y4cA","NGR234_036",38576,42169,null,"-",1197,16519673,null,null,"cd01406,pfam06870","Sir2-like: Prokaryotic group of uncharac ; A49-like RNA polymerase I associated fac","COG0846","NAD-dependent protein deacetylases, SIR2"]
["Y4cB","NGR234_037",42226,42522,null,"-",98,16519674]
["Y4cC","NGR234_038",42556,44109,null,"-",517,16519675,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3696","Putative silver efflux pump [Inorganic i"]
["Y4cD","NGR234_039",44106,46028,null,"-",640,16519676,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain and TIR domain",null,"smart00255","Toll - interleukin 1 - resistance; "]
["Y4cE","NGR234_040",46486,47661,null,"-",391,16519677,null,null,"pfam04471,pfam04471","Restriction endonuclease. Prokaryotic fa ; Restriction endonuclease. Prokaryotic fa","COG1715,COG1715","Restriction endonuclease [Defense mechan ; Restriction endonuclease [Defense mechan"]
["Y4cF","NGR234_041",47687,48829,null,"-",380,16519678,null,null,"pfam07756","Protein of unknown function (DUF1612). T","COG2961","Protein involved in catabolism of extern"]
["Y4cG","NGR234_042",49361,50278,null,"+",305,16519679,null,null,"cd03768","Serine Recombinase (SR) family, Resolvas","COG1961","Site-specific recombinases, DNA invertas"]
["Y4cH","NGR234_043",50427,50636,null,"-",69,16519680,null,null,"pfam00313","'Cold-shock' DNA-binding domain. ","COG1278","Cold shock proteins [Transcription]"]
["replication initiation protein RepC","NGR234_044",53202,54416,null,"-",404,16519681,null,null,"pfam03428","Replication protein C. Replication prote"]
["Y4cJ","NGR234_045",54571,55551,null,"-",326,16519682,null,null,"pfam07506,pfam02195","RepB plasmid partitioning protein. This  ; ParB-like nuclease domain. ","COG1475","Stage 0 sporulation protein J (antagonis"]
["Y4cK","NGR234_046",55608,56831,null,"-",407,16519683,null,null,"PHA02519","plasmid partition protein SopA; Reviewed","COG1192,COG0789","ATPases involved in chromosome partition ; Predicted transcriptional regulators [Tr"]
["putative autoinducer synthesis protein","NGR234_047",57635,58261,null,"+",208,16519684,null,null,"pfam00765","Autoinducer synthetase. ","COG3916","N-acyl-L-homoserine lactone synthetase ["]
["conjugal transfer protein TrbB","NGR234_048",58272,59249,null,"+",325,16519685,null,null,"pfam00437","Type II/IV secretion system protein. Thi","COG4962","Flp pilus assembly protein, ATPase CpaF "]
[{"$nulls":4},"#",190893999,"Rhizobium_etli_CIAT_652","/am/ftp-genomes/Bacteria/Rhizobium_etli_CIAT_652/NC_010996.ptt"]
["hypothetical protein","RHECIAT_PB0000007",8511,8684,null,"+",57,190893989,null,null,"pfam07756","Protein of unknown function (DUF1612). T"]
["hypothetical protein","RHECIAT_PB0000008",8807,12604,null,"+",1265,190893990,null,null,"pfam09407,cd02577","Protein of unknown function (DUF2005). T ; PSTD1: Pseudouridine synthase, a subgrou"]
["probable nuclease protein","RHECIAT_PB0000009",12711,13142,null,"-",143,190893991,null,null,"pfam08937","MTH538 TIR-like domain (DUF1863). This d"]
["putative anthranilate synthase component I protein","RHECIAT_PB0000010",13492,14322,null,"-",276,190893992,null,null,"pfam07613","Protein of unknown function (DUF1576). T"]
["hypothetical protein","RHECIAT_PB0000011",14497,15840,null,"-",447,190893993,null,null,"pfam00811","Ependymin. ","COG4783","Putative Zn-dependent protease, contains"]
["COG0076E,COG0524G, putative nucleoside 2-deoxyribosyltransferase protein","RHECIAT_PB0000012",16011,17144,null,"+",377,190893994,null,"COG0524","cd01174,pfam00571","Ribokinase catalyses the phosphorylation ; CBS domain pair. CBS domains are small i","COG0524","Sugar kinases, ribokinase family [Carboh"]
["COG1059L, putative N-glycosylase/DNA lyase protein, HhH-GPD family","RHECIAT_PB0000014",18613,19317,null,"+",234,190893995,null,"COG1059","cd00056,pfam07632","endonuclease III; includes endonuclease  ; Protein of unknown function (DUF1593). A","COG1059","Thermostable 8-oxoguanine DNA glycosylas"]
["COG0603R, probable succinoglycan biosynthesis transcriptional regulator protein","RHECIAT_PB0000015",19332,19907,null,"+",191,190893996,null,"COG0603","cd01995","ExsB is a transcription regulator relate","COG0603","Predicted PP-loop superfamily ATPase [Ge"]
["hypothetical protein","RHECIAT_PB0000016",19908,20375,null,"+",155,190893997,null,null,"pfam08937","MTH538 TIR-like domain (DUF1863). This d"]
["hypothetical protein","RHECIAT_PB0000017",20532,21563,null,"+",343,190893998]
["hypothetical protein","RHECIAT_PB0000018",21808,23316,null,"-",502,190893999,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","RHECIAT_PB0000019",23321,24733,null,"-",470,190894000,"TIR domain fuzed to APAZ domain",null,"pfam10446","Protein of unknown function (DUF2457). T","COG3420","Nitrous oxidase accessory protein [Inorg"]
["COG0210L, probable ATP-dependent DNA helicase protein","RHECIAT_PB0000020",25176,26960,null,"-",594,190894001,null,"COG0210","pfam00580,pfam01443","UvrD/REP helicase. The Rep family helica ; Viral (Superfamily 1) RNA helicase. Heli","COG0210","Superfamily I DNA and RNA helicases [DNA"]
["COG3593L, probable overcoming lysogenization defect protein","RHECIAT_PB0000021",26957,28768,null,"-",603,190894002,null,"COG1195","cd01026,cd03276,cd04742","TOPRIM_OLD: topoisomerase-primase (TOPRI ; Eukaryotic SMC6 proteins; SMC proteins a ; 2-Nitropropane dioxygenase (NPD)-like do","COG3593","Predicted ATP-dependent endonuclease of "]
["COG2253S, hypothetical protein","RHECIAT_PB0000022",28930,29790,null,"-",286,190894003,null,"COG2253","pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
["hypothetical protein","RHECIAT_PB0000023",29787,30614,null,"-",275,190894004,null,"COG5340","cd03080","GST_N family, Metaxin subfamily, Metaxin","COG5340","Predicted transcriptional regulator [Tra"]
["hypothetical protein","RHECIAT_PB0000024",31272,31559,null,"-",95,190894005,null,null,"cd02760","The MopB_Phenylacetyl-CoA-OR CD contains"]
["COG4329S, hypothetical conserved membrane protein","RHECIAT_PB0000025",31532,32014,null,"+",160,190894006,null,"COG4329","pfam10002","Predicted membrane protein (DUF2243). Th","COG4329","Predicted membrane protein [Function unk"]
["COG1252C, putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase protein","RHECIAT_PB0000026",32219,33631,null,"+",470,190894007,null,"COG1252","pfam07992,pfam10405","Pyridine nucleotide-disulphide oxidoredu ; Rad4 beta-hairpin domain 3. This short d","COG1252","NADH dehydrogenase, FAD-containing subun"]
["COG1396K, putative transcriptional regulator protein","RHECIAT_PB0000027",33920,34660,null,"-",246,190894008,null,"COG1396","cd00093","Helix-turn-helix XRE-family like protein","COG1396","Predicted transcriptional regulators [Tr"]
["COG4315S, hypothetical protein","RHECIAT_PB0000028",34988,35389,null,"-",133,190894009,null,"COG4315","pfam03640","Secreted repeat of unknown function. Thi","COG4315,COG0587","Uncharacterized protein conserved in bac ; DNA polymerase III, alpha subunit [DNA r"]
[{"$nulls":4},"#",146279708,"Rhodobacter_sphaeroides_ATCC_17025","/am/ftp-genomes/Bacteria/Rhodobacter_sphaeroides_ATCC_17025/NC_009429.ptt"]
["hypothetical protein","Rsph17025_3683",577261,577491,null,"-",76,146279698]
["COG3246S, aminotransferase class-III","Rsph17025_3684",577672,578472,null,"-",266,146279699,null,"COG3246","pfam05853","Prokaryotic protein of unknown function ","COG3246","Uncharacterized conserved protein [Funct"]
["COG0161H, hypothetical protein","Rsph17025_3685",578469,579797,null,"-",442,146279700,null,"COG0161","cd00610","Acetyl ornithine aminotransferase family","COG0161","Adenosylmethionine-8-amino-7-oxononanoat"]
["COG0589T, hypothetical protein","Rsph17025_3686",579801,580226,null,"-",141,146279701,null,"COG0589","pfam00582","Universal stress protein family. The uni","COG0589","Universal stress protein UspA and relate"]
["COG2358R, hypothetical protein","Rsph17025_3688",582962,583936,null,"-",324,146279702,null,"COG2358","pfam09084","NMT1/THI5 like. This family contains the","COG2358","TRAP-type uncharacterized transport syst"]
["COG1737K, hypothetical protein","Rsph17025_3689",584012,584941,null,"+",309,146279703,null,"COG1737","cd05013,pfam01418","RpiR-like protein. RpiR contains a SIS ( ; Helix-turn-helix domain, rpiR family. Th","COG1737","Transcriptional regulators [Transcriptio"]
["hypothetical protein","Rsph17025_3690",584982,585179,null,"-",65,146279704]
["COG1475K, hypothetical protein","Rsph17025_3691",585493,586578,null,"-",361,146279705,null,"COG1475","pfam02195","ParB-like nuclease domain. ","COG1475","Stage 0 sporulation protein J (antagonis"]
["COG1192D, hypothetical protein","Rsph17025_3692",586556,587962,null,"-",468,146279706,null,"COG1192","pfam01656","CobQ/CobB/MinD/ParA nucleotide binding d","COG1192","ATPases involved in chromosome partition"]
["hypothetical protein","Rsph17025_3693",588506,589849,null,"+",447,146279707,null,"COG5527","pfam01051,pfam01039","Initiator Replication protein. This prot ; Carboxyl transferase domain. All of the ","COG5527,COG3482,COG1747","Protein involved in initiation of plasmi ; Uncharacterized conserved protein [Funct ; Uncharacterized N-terminal domain of the"]
["COG1431J, hypothetical protein","Rsph17025_3694",596174,598507,null,"+",777,146279708,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG4449,COG3321","Predicted protease of the Abi (CAAX) fam ; Polyketide synthase modules and related "]
["transposase, IS4 family protein","Rsph17025_3695",598504,599508,null,"+",334,146279709,"Rec-like endonuclease fused to uncharacterized N-terminal domain",null,"CHL00095","Clp protease ATP binding subunit","COG3475","LPS biosynthesis protein [Cell envelope "]
["COG3293L, hypothetical protein","Rsph17025_3696",599554,599913,null,"+",119,146279710,null,"COG3293",null,null,"COG3293","Transposase and inactivated derivatives "]
["COG3293L, IS66 Orf2 family protein","Rsph17025_3697",599934,600236,null,"+",100,146279711,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3039","Transposase and inactivated derivatives,"]
["COG2963L, hypothetical protein","Rsph17025_3698",600252,600659,null,"+",135,146279712,null,"COG2963","pfam01527","Transposase. Transposase proteins are ne","COG2963","Transposase and inactivated derivatives "]
["COG3436L, hypothetical protein","Rsph17025_3699",600656,601006,null,"+",116,146279713,null,"COG3436","pfam05717","IS66 Orf2 like protein. This protein is ","COG3436","Transposase and inactivated derivatives "]
["COG3436L, hypothetical protein","Rsph17025_3700",601049,602623,null,"+",524,146279714,null,null,"pfam03050,pfam02463","Transposase IS66 family. Transposase pro ; RecF/RecN/SMC N terminal domain. This do","COG3436,COG4942","Transposase and inactivated derivatives  ; Membrane-bound metallopeptidase [Cell di"]
["COG3547L, hypothetical protein","Rsph17025_3701",602661,603707,null,"+",348,146279715,null,"COG3547","pfam02371,pfam01548,pfam01544","Transposase IS116/IS110/IS902 family. Tr ; Transposase. Transposase proteins are ne ; CorA-like Mg2+ transporter protein. The ","COG3547","Transposase and inactivated derivatives "]
["hypothetical protein","Rsph17025_3702",603987,604589,null,"+",200,146279716,null,null,"pfam07929","Plasmid pRiA4b ORF-3-like protein. Membe"]
["COG3293L, hypothetical protein","Rsph17025_3703",604619,604765,null,"+",48,146279717,{"$nulls":4},"COG3293","Transposase and inactivated derivatives "]
["hypothetical protein","Rsph17025_3704",604749,605804,null,"-",351,146279718,null,null,"pfam08378","Nuclease-related domain. The nuclease-re"]
[{"$nulls":4},"#",91978096,"Rhodopseudomonas_palustris_BisB5","/am/ftp-genomes/Bacteria/Rhodopseudomonas_palustris_BisB5/NC_007958.ptt"]
["COG0605P, superoxide dismutase","RPD_3621",4036876,4037472,null,"-",198,91978086,null,"COG0605","pfam02777,pfam00081","Iron/manganese superoxide dismutases, C- ; Iron/manganese superoxide dismutases, al","COG0605","Superoxide dismutase [Inorganic ion tran"]
["COG0477GEPR, major facilitator transporter","RPD_3622",4037649,4038884,null,"-",411,91978087,null,"COG2271","pfam07690","Major Facilitator Superfamily. ","COG2814","Arabinose efflux permease [Carbohydrate "]
["COG0534V, MATE efflux family protein","RPD_3623",4039143,4040516,null,"+",457,91978088,null,"COG0534","pfam01554,pfam01554","MatE. The MatE domain","COG0534","Na+-driven multidrug efflux pump [Defens"]
["COG4731S, hypothetical protein","RPD_3624",4040638,4041081,null,"+",147,91978089,null,"COG4731","pfam09917","Uncharacterized protein conserved in bac","COG4731","Uncharacterized protein conserved in bac"]
["COG0486R, hypothetical protein","RPD_3625",4041207,4042358,null,"-",383,91978090,null,null,"cd05800","This PGM-like (phosphoglucomutase-like) "]
["hypothetical protein","RPD_3626",4042436,4042579,null,"-",47,91978091]
["COG0420L, metallophosphoesterase","RPD_3627",4042795,4044018,null,"+",407,91978092,null,"COG0420","pfam00149","Calcineurin-like phosphoesterase. This f","COG0420","DNA repair exonuclease [DNA replication,"]
["COG4717S, hypothetical protein","RPD_3628",4044015,4047470,null,"+",1151,91978093,null,"COG4717","cd03240,pfam02463,pfam02463,pfam10174","The catalytic domains of Rad50 are simil ; RecF/RecN/SMC N terminal domain. This do ; RecF/RecN/SMC N terminal domain. This do ; RIM-binding protein of the cytomatrix ac","COG4717","Uncharacterized conserved protein [Funct"]
["COG1156C,COG1674D, hypothetical protein","RPD_3629",4048610,4049380,null,"+",256,91978094]
["COG1204R, DEAD/DEAH box helicase-like","RPD_3630",4049364,4052885,null,"+",1173,91978095,null,"COG1204","pfam00270,smart00490","DEAD/DEAH box helicase. Members of this  ; helicase superfamily c-terminal domain; ","COG1204","Superfamily II helicase [General functio"]
["hypothetical protein","RPD_3631",4052958,4054481,null,"-",507,91978096,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","RPD_3632",4054478,4055923,null,"-",481,91978097,"TIR domain fuzed to APAZ domain",null,"smart00255","Toll - interleukin 1 - resistance; "]
["hypothetical protein","RPD_3633",4056261,4056668,null,"+",135,91978098,null,null,"pfam03863","Phage maturation protein. "]
["hypothetical protein","RPD_3634",4056712,4057161,null,"+",149,91978099,null,null,"pfam05770","Inositol 1, 3, 4-trisphosphate 5/6-kinas"]
["COG2135S, hypothetical protein","RPD_3635",4057164,4057889,null,"+",241,91978100,null,"COG2135","pfam02586","Uncharacterised ACR, COG2135. ","COG2135","Uncharacterized conserved protein [Funct"]
["COG0389L, DNA polymerase IV","RPD_3636",4058037,4059227,null,"+",396,91978101,null,"COG0389","cd03586","Pol_IV_kappa, a member of the Y-family o","COG0389","Nucleotidyltransferase/DNA polymerase in"]
["COG0672P, iron permease FTR1","RPD_3637",4059446,4061440,null,"-",664,91978102,null,"COG2010","pfam03239,pfam09086,CHL00131","Iron permease FTR1 family. ","COG0672,COG3258","High-affinity Fe2+/Pb2+ permease [Inorga ; Cytochrome c [Energy production and conv"]
["COG0798P, bile acid:sodium symporter","RPD_3638",4061600,4062580,null,"-",326,91978103,null,"COG0385","pfam01758","Sodium Bile acid symporter family. This ","COG0798","Arsenite efflux pump ACR3 and related pe"]
["COG0640K, regulatory protein, ArsR","RPD_3639",4062666,4063058,null,"+",130,91978104,null,"COG0640","smart00418","helix_turn_helix, Arsenical Resistance O","COG0640","Predicted transcriptional regulators [Tr"]
["COG3696P, putative silver efflux pump-like","RPD_3640",4063165,4063413,null,"-",82,91978105,null,"COG3696","pfam00873","AcrB/AcrD/AcrF family. Members of this f","COG3696","Putative silver efflux pump [Inorganic i"]
["COG3696P, putative silver efflux pump-like","RPD_3641",4063410,4063724,null,"-",104,91978106,null,"COG3696","pfam00873","AcrB/AcrD/AcrF family. Members of this f","COG3696","Putative silver efflux pump [Inorganic i"]
[{"$nulls":4},"#",117922288,"Shewanella_ANA-3","/am/ftp-genomes/Bacteria/Shewanella_ANA-3/NC_008577.ptt"]
["hypothetical protein","Shewana3_3846",4615507,4616439,null,"+",310,117922278,{"$nulls":4},"COG2194","Predicted membrane-associated, metal-dep"]
["COG2930S, hypothetical protein","Shewana3_3847",4616578,4617159,null,"+",193,117922279,null,null,"pfam04366","Family of unknown function (DUF500). Pro","COG2930","Uncharacterized conserved protein [Funct"]
["COG0845M, RND family efflux transporter MFP subunit","Shewana3_3848",4618877,4619962,null,"+",361,117922280,null,"COG0845","pfam00529","HlyD family secretion protein. ","COG0845","Membrane-fusion protein [Cell envelope b"]
["COG0841V, acriflavin resistance protein","Shewana3_3849",4619966,4622995,null,"+",1009,117922281,null,"COG0841","pfam00873","AcrB/AcrD/AcrF family. Members of this f","COG0841","Cation/multidrug efflux pump [Defense me"]
["COG1309K, TetR family transcriptional regulator","Shewana3_3850",4623021,4623644,null,"-",207,117922282,null,"COG1309","pfam00440","Bacterial regulatory proteins, tetR fami","COG1309","Transcriptional regulator [Transcription"]
["COG2199T, diguanylate cyclase","Shewana3_3851",4624559,4625701,null,"+",380,117922283,null,"COG2199","cd01949","Diguanylate-cyclase (DGC) or GGDEF domai","COG3706,COG1113","Response regulator containing a CheY-lik ; Gamma-aminobutyrate permease and related"]
["CRISPR-associated Csy4 family protein","Shewana3_3852",4626579,4627190,null,"-",203,117922284,null,null,"pfam09618","CRISPR-associated protein (Cas_Csy4). CR","COG1156","Archaeal/vacuolar-type H+-ATPase subunit"]
["CRISPR-associated Csy3 family protein","Shewana3_3853",4627192,4628241,null,"-",349,117922285,null,null,"pfam09615","CRISPR-associated protein (Cas_Csy3). CR"]
["hypothetical protein","Shewana3_3854",4628251,4630356,null,"-",701,117922286,null,null,"pfam09614,pfam09787","CRISPR-associated protein (Cas_Csy2). CR ; Golgin subfamily A member 5. Members of ","COG4065","Uncharacterized protein conserved in arc"]
["hypothetical protein","Shewana3_3855",4630350,4631582,null,"-",410,117922287]
["hypothetical protein","Shewana3_3856",4631838,4633280,null,"-",480,117922288,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","Shewana3_3857",4633270,4634691,null,"-",473,117922289,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["hypothetical protein","Shewana3_3858",4635670,4635972,null,"-",100,117922290]
["COG1396K, XRE family transcriptional regulator","Shewana3_3859",4636213,4636524,null,"-",103,117922291,null,"COG1396","cd00093","Helix-turn-helix XRE-family like protein","COG1396","Predicted transcriptional regulators [Tr"]
["COG0539J,COG0664T, hypothetical protein","Shewana3_3860",4636729,4637265,null,"+",178,117922292,null,null,"cd02968","SCO (an acronym for Synthesis of Cytochr"]
["COG3596R, hypothetical protein","Shewana3_3861",4637378,4638337,null,"-",319,117922293,null,"COG2842","pfam05621","Bacterial TniB protein. This family cons","COG3051","Citrate lyase, alpha subunit [Energy pro"]
["COG2801L, integrase catalytic subunit","Shewana3_3862",4638394,4640247,null,"-",617,117922294,null,null,"pfam00665,pfam09299","Integrase core domain. Integrase mediate ; Mu transposase, C-terminal. Members of t","COG1405","Transcription initiation factor TFIIIB, "]
["COG0620E,COG0640K, hypothetical protein","Shewana3_3863",4640244,4640873,null,"-",209,117922295,null,null,"pfam08721,pfam08451","TnsA endonuclease C terminal. The Tn7 tr ; Adenosine/AMP deaminase N-terminal. This","COG4189","Predicted transcriptional regulator [Tra"]
["hypothetical protein","Shewana3_3864",4641038,4641688,null,"-",216,117922296]
["COG3594G, acyltransferase 3","Shewana3_3865",4641763,4642800,null,"-",345,117922297,null,"COG1835","pfam01757","Acyltransferase family. This family incl","COG1835","Predicted acyltransferases [Lipid metabo"]
["hypothetical protein","Shewana3_3866",4642802,4644199,null,"-",465,117922298,null,null,"pfam09660","Protein of unknown function (DUF2397). P"]
[{"$nulls":4},"#",150378394,"Sinorhizobium_medicae_WSM419","/am/ftp-genomes/Bacteria/Sinorhizobium_medicae_WSM419/NC_009622.ptt"]
["COG1192D, cobyrinic acid ac-diamide synthase","Smed_6490",182259,183473,null,"+",404,150378384,null,"COG1192","pfam01656,cd04765","CobQ/CobB/MinD/ParA nucleotide binding d ; Putative helix-turn-helix (HTH) MlrA-lik","COG1192","ATPases involved in chromosome partition"]
["COG1475K, parB-like partition protein","Smed_6491",183470,184492,null,"+",340,150378385,null,"COG1475","pfam02195,pfam07506","ParB-like nuclease domain. ","COG1475","Stage 0 sporulation protein J (antagonis"]
["replication initiation protein RepC","Smed_6492",184647,185861,null,"+",404,150378386,null,null,"pfam03428","Replication protein C. Replication prote"]
["hypothetical protein","Smed_6494",187369,187671,null,"-",100,150378387,null,null,"cd06445","The DNA repair protein O6-alkylguanine-D"]
["hypothetical protein","Smed_6495",187786,188049,null,"+",87,150378388,{"$nulls":4},"COG1882","Pyruvate-formate lyase [Energy productio"]
["hypothetical protein","Smed_6497",189070,189288,null,"+",72,150378389,null,null,"pfam10605","3HB-oligomer hydrolase (3HBOH). D-(-)-3-"]
["prevent-host-death family protein","Smed_6498",189285,189563,null,"+",92,150378390,null,null,"pfam02604","Phd_YefM. ","COG2161","Antitoxin of toxin-antitoxin stability s"]
["COG4113R, PilT domain-containing protein","Smed_6500",189762,190181,null,"-",139,150378391,null,"COG4113","pfam01850","PIN domain. This PIN (PilT N terminus) d","COG4113","Predicted nucleic acid-binding protein, "]
["COG1715V, restriction endonuclease","Smed_6502",191590,192570,null,"+",326,150378392,null,"COG1715","pfam04471,pfam04471","Restriction endonuclease. Prokaryotic fa ; Restriction endonuclease. Prokaryotic fa","COG1715,COG1715","Restriction endonuclease [Defense mechan ; Restriction endonuclease [Defense mechan"]
["TIR protein","Smed_6503",193025,194950,null,"+",641,150378393,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain and TIR domain",null,"smart00255","Toll - interleukin 1 - resistance; "]
["hypothetical protein","Smed_6504",194947,196500,null,"+",517,150378394,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3696","Putative silver efflux pump [Inorganic i"]
["hypothetical protein","Smed_6505",196491,196787,null,"-",98,150378395]
["COG2801L, integrase catalytic region","Smed_6506",196795,197724,null,"-",309,150378396,null,"COG2801","pfam00665","Integrase core domain. Integrase mediate","COG2801","Transposase and inactivated derivatives "]
["COG2801L, transposase IS3/IS911 family protein","Smed_6507",197718,197984,null,"-",88,150378397,null,null,"pfam01527","Transposase. Transposase proteins are ne","COG0286","Type I restriction-modification system m"]
["hypothetical protein","Smed_6508",198161,201754,null,"+",1197,150378398,null,null,"cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846","NAD-dependent protein deacetylases, SIR2"]
["hypothetical protein","Smed_6509",201862,202500,null,"-",212,150378399]
["COG2963L, transposase IS3/IS911 family protein","Smed_6511",203023,203406,null,"+",127,150378400,null,"COG2963","pfam01527","Transposase. Transposase proteins are ne","COG2963","Transposase and inactivated derivatives "]
["COG3436L, IS66 Orf2 family protein","Smed_6512",203403,203750,null,"+",115,150378401,null,"COG3436","pfam05717","IS66 Orf2 like protein. This protein is ","COG3436","Transposase and inactivated derivatives "]
["COG3436L, transposase IS66","Smed_6513",203821,205386,null,"+",521,150378402,null,null,"pfam03050,pfam10018","Transposase IS66 family. Transposase pro ; Vitamin-D-receptor interacting protein c","COG3436,COG2433","Transposase and inactivated derivatives  ; Uncharacterized conserved protein [Funct"]
["hypothetical protein","Smed_6514",205386,205691,null,"+",101,150378403]
["COG2801L, hypothetical protein","Smed_6515",205785,206840,null,"+",351,150378404,null,"COG2801","PHA02517","putative transposase OrfB; Reviewed","COG2801","Transposase and inactivated derivatives "]
[{"$nulls":4},"#",148553128,"Sphingomonas_wittichii_RW1","/am/ftp-genomes/Bacteria/Sphingomonas_wittichii_RW1/NC_009511.ptt"]
["hypothetical protein","Swit_0191",181212,182258,null,"-",348,148553118,null,null,"PHA02031,pfam09255","putative DnaG-like primase"]
["COG1475K, ParB family protein","Swit_0192",182319,184430,null,"-",703,148553119,null,"COG1475","pfam02195,cd01193,pfam05911,pfam01539","ParB-like nuclease domain. ","COG1475","Stage 0 sporulation protein J (antagonis"]
["hypothetical protein","Swit_0193",184862,186058,null,"-",398,148553120,null,null,"cd06274","Ligand binding domain of DNA transcripti"]
["hypothetical protein","Swit_0194",186280,186516,null,"-",78,148553121,null,null,"pfam09954","Uncharacterized protein conserved in bac"]
["COG2378K, hypothetical protein","Swit_0195",186619,187482,null,"+",287,148553122,null,"COG2378","pfam01150","GDA1/CD39 (nucleoside phosphatase) famil","COG2378","Predicted transcriptional regulator [Tra"]
["COG0553KL, helicase domain-containing protein","Swit_0196",187508,191011,null,"+",1167,148553123,null,"COG0553","smart00487,cd00079,pfam03938","DEAD-like helicases superfamily; ","COG0553","Superfamily II DNA/RNA helicases, SNF2 f"]
["COG0323L, hypothetical protein","Swit_0197",191049,195293,null,"+",1414,148553124,null,"COG0323","pfam02518,pfam09073,cd05127","Histidine kinase-, DNA gyrase B-, and HS ; BUD22. BUD22 has been shown in yeast to  ; This family represents IQ motif containi","COG0323,COG4547","DNA mismatch repair enzyme (predicted AT ; Cobalamin biosynthesis protein CobT (nic"]
["COG1743L, hypothetical protein","Swit_0198",195277,198078,null,"+",933,148553125,null,"COG1743","pfam06634,pfam01170","Protein of unknown function (DUF1156). T ; Putative RNA methylase family UPF0020. T","COG1743","Adenine-specific DNA methylase containin"]
["COG1483R, AAA family ATPase","Swit_0199",198092,201388,null,"+",1098,148553126,null,"COG1483","pfam04465,pfam03200,cd06391","Protein of unknown function (DUF499). Fa ; Mannosyl oligosaccharide glucosidase. Th ; N-terminal leucine/isoleucine/valine-bin","COG1483","Predicted ATPase (AAA+ superfamily) [Gen"]
["hypothetical protein","Swit_0200",201457,202764,null,"+",435,148553127,"TIR domain fused to APAZ domain",null,"CHL00179","Ycf2; Provisional","COG0040","ATP phosphoribosyltransferase [Amino aci"]
["hypothetical protein","Swit_0201",202761,204317,null,"+",518,148553128,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","Swit_0202",204785,205171,null,"-",128,148553129]
["COG0177L, endonuclease III / DNA-(apurinic or apyrimidinic site) lyase","Swit_0203",205257,205913,null,"-",218,148553130,null,"COG0177","smart00478,pfam10576","endonuclease III; includes endonuclease  ; Iron-sulfur binding domain of endonuclea","COG0177","Predicted EndoIII-related endonuclease ["]
["COG0289E, dihydrodipicolinate reductase","Swit_0204",205910,206668,null,"-",252,148553131,null,"COG0289","pfam05173,pfam01113","Dihydrodipicolinate reductase, C-terminu ; Dihydrodipicolinate reductase, N-terminu","COG0289","Dihydrodipicolinate reductase [Amino aci"]
["COG2207K, cupin 2 domain-containing protein","Swit_0205",206797,207129,null,"+",110,148553132,null,"COG0662","pfam07883","Cupin domain. This family represents the","COG0662","Mannose-6-phosphate isomerase [Carbohydr"]
["secreted Zn-dependent protease-like protein","Swit_0206",207126,207680,null,"+",184,148553133,null,"COG5661","pfam06037","Bacterial protein of unknown function (D","COG5661","Predicted secreted Zn-dependent protease"]
["COG0846K, NAD-dependent deacetylase","Swit_0207",207677,208381,null,"+",234,148553134,null,"COG0846","cd01412","SIRT5_Af1_CobB: Eukaryotic, archaeal and","COG0846","NAD-dependent protein deacetylases, SIR2"]
["COG1159R, GTP-binding protein Era","Swit_0208",208531,209424,null,"-",297,148553135,null,"COG1159","cd04163,pfam07650","Era subfamily.  Era (E. coli Ras-like pr ; KH domain. ","COG1159","GTPase [General function prediction only"]
["COG0571K, RNAse III","Swit_0209",209421,210125,null,"-",234,148553136,null,"COG0571","cd00593,cd00048","RIBOc. Ribonuclease III C terminal domai ; Double-stranded RNA binding motif. Bindi","COG0571","dsRNA-specific ribonuclease [Transcripti"]
["hypothetical protein","Swit_0210",210152,210328,null,"+",58,148553137]
["hypothetical protein","Swit_0211",210338,210616,null,"-",92,148553138]
[{"$nulls":4},"#",194365751,"Stenotrophomonas_maltophilia_R551_3","/am/ftp-genomes/Bacteria/Stenotrophomonas_maltophilia_R551_3/NC_011071.ptt"]
["COG0454KR, GCN5-related N-acetyltransferase","Smal_1964",2206831,2207310,null,"+",159,194365741,null,"COG0456","pfam00583","Acetyltransferase (GNAT) family. This fa","COG1247","Sortase and related acyltransferases [Ce"]
["COG1182I, NAD(P)H dehydrogenase (quinone)","Smal_1965",2207385,2207993,null,"-",202,194365742,null,"COG1182","pfam02525","Flavodoxin-like fold. This family consis","COG1182","Acyl carrier protein phosphodiesterase ["]
["COG2259S, DoxX family protein","Smal_1966",2208300,2208722,null,"+",140,194365743,null,"COG2259","pfam07681","DoxX. These proteins appear to have some","COG2259","Predicted membrane protein [Function unk"]
["COG0583K, transcriptional regulator, LysR family","Smal_1967",2208812,2209705,null,"+",297,194365744,null,null,"pfam03466,pfam00126","LysR substrate binding domain. The struc ; Bacterial regulatory helix-turn-helix pr","COG0583","Transcriptional regulator [Transcription"]
["COG1741R, Pirin domain protein","Smal_1968",2209872,2210744,null,"+",290,194365745,null,"COG1741","pfam02678,pfam05726","Pirin. This family consists of Pirin pro ; Pirin C-terminal cupin domain. This regi","COG1741","Pirin-related protein [General function "]
["COG2207K, transcriptional regulator, AraC family","Smal_1969",2210785,2211633,null,"-",282,194365746,null,null,"smart00342","helix_turn_helix, arabinose operon contr","COG2207","AraC-type DNA-binding domain-containing "]
["hypothetical protein","Smal_1970",2211724,2212185,null,"+",153,194365747]
["putative cointegrate resolution protein T","Smal_1971",2212577,2213482,null,"-",301,194365748,null,null,"pfam02463","RecF/RecN/SMC N terminal domain. This do","COG1196","Chromosome segregation ATPases [Cell div"]
["COG0582L, integrase family protein","Smal_1972",2213586,2214665,null,"+",359,194365749,null,"COG0582","cd00799","Cre recombinase, C-terminal catalytic do","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein","Smal_1973",2214814,2216661,null,"+",615,194365750,"TIR domain fused to APAZ domain"]
["COG1431J, hypothetical protein","Smal_1974",2216658,2218235,null,"+",525,194365751,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","Smal_1975",2218340,2219203,null,"-",287,194365752]
["COG2059P, chromate transporter, chromate ion transporter (CHR) family","Smal_1976",2219739,2220941,null,"-",400,194365753,null,"COG2059","pfam02417,pfam02417","Chromate transporter. Members of this fa ; Chromate transporter. Members of this fa","COG2059,COG2059","Chromate transport protein ChrA [Inorgan ; Chromate transport protein ChrA [Inorgan"]
["COG1393P, arsenate reductase","Smal_1977",2220996,2221415,null,"-",139,194365754,null,"COG1393","cd03034","Arsenate Reductase (ArsC) family, ArsC s","COG1393","Arsenate reductase and related proteins,"]
["COG0431R, arsenical resistance protein ArsH","Smal_1978",2221412,2222152,null,"-",246,194365755,null,"COG0431","pfam03358","NADPH-dependent FMN reductase. ","COG0431","Predicted flavoprotein [General function"]
["COG0640K, transcriptional regulator, ArsR family","Smal_1979",2222193,2222507,null,"+",104,194365756,null,"COG0640","smart00418","helix_turn_helix, Arsenical Resistance O","COG0640","Predicted transcriptional regulators [Tr"]
["COG0394T, protein tyrosine phosphatase","Smal_1980",2222532,2223023,null,"+",163,194365757,null,"COG0394","pfam01451","Low molecular weight phosphotyrosine pro","COG0394","Protein-tyrosine-phosphatase [Signal tra"]
["COG0798P, arsenical-resistance protein","Smal_1981",2223044,2224102,null,"+",352,194365758,null,"COG0798","pfam01758","Sodium Bile acid symporter family. This ","COG0798","Arsenite efflux pump ACR3 and related pe"]
["COG0492O, thioredoxin reductase","Smal_1982",2224106,2225092,null,"+",328,194365759,null,"COG0492","pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG0492","Thioredoxin reductase [Posttranslational"]
["COG2072P, FAD-dependent pyridine nucleotide-disulphide oxidoreductase","Smal_1983",2225117,2226202,null,"+",361,194365760,null,"COG2072","pfam00743","Flavin-binding monooxygenase-like. This ","COG2072,COG1251","Predicted flavoprotein involved in K+ tr ; NAD(P)H-nitrite reductase [Energy produc"]
["COG0394T, protein tyrosine phosphatase","Smal_1984",2226163,2226696,null,"-",177,194365761,null,"COG0394","pfam01451","Low molecular weight phosphotyrosine pro","COG0394","Protein-tyrosine-phosphatase [Signal tra"]
[{"$nulls":4},"#",21225132,"Streptomyces_coelicolor","/am/ftp-genomes/Bacteria/Streptomyces_coelicolor/NC_003888.ptt"]
["COG0640K, transcription regulator ArsR","SCO6830",7601654,7602007,null,"+",117,21225122,null,"COG0640","smart00418","helix_turn_helix, Arsenical Resistance O","COG0640","Predicted transcriptional regulators [Tr"]
["hypothetical protein","SCO6831",7602498,7602773,null,"+",91,21225123,null,null,"cd00883","Carbonic anhydrases (CA) are zinc-contai"]
["COG1884I, methylmalonyll-CoA mutase","SCO6832",7602829,7604424,null,"+",531,21225124,null,"COG1884","cd03680","Coenzyme B12-dependent-methylmalonyl coe","COG1884","Methylmalonyl-CoA mutase, N-terminal dom"]
["COG2185I, isobutyryl-CoA mutase, small subunit","SCO6833",7604468,7604947,null,"+",159,21225125,null,"COG2185","cd02071","methylmalonyl CoA mutase B12 binding dom","COG2185","Methylmalonyl-CoA mutase, C-terminal dom"]
["COG0492O, thioredoxin reductase","SCO6834",7605261,7606241,null,"-",326,21225126,null,"COG0492","pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG0492","Thioredoxin reductase [Posttranslational"]
["COG0394T, arsenate reductase","SCO6835",7606238,7606651,null,"-",137,21225127,null,"COG0394","pfam01451","Low molecular weight phosphotyrosine pro","COG0394","Protein-tyrosine-phosphatase [Signal tra"]
["COG0640K, transcription regulator ArsR","SCO6836",7606744,7607052,null,"+",102,21225128,null,"COG0640","smart00418","helix_turn_helix, Arsenical Resistance O","COG0640","Predicted transcriptional regulators [Tr"]
["COG0798P, arsenic resistance membrane transport protein","SCO6837",7607049,7608155,null,"+",368,21225129,null,"COG0798","pfam01758","Sodium Bile acid symporter family. This ","COG0798","Arsenite efflux pump ACR3 and related pe"]
["COG2072P, monooxygenase","SCO6838",7608214,7609278,null,"+",354,21225130,null,"COG2072","pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG2072","Predicted flavoprotein involved in K+ tr"]
["hypothetical protein","SCO6839",7609452,7610765,null,"-",437,21225131,"Rec-like endonuclease fused to uncharacterized N-terminal domain",null,"smart00475","5'-3' exonuclease; ","COG0498","Threonine synthase [Amino acid transport"]
["COG0620E, hypothetical protein","SCO6840",7610762,7612807,null,"-",681,21225132,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG1637L,COG3586S, hypothetical protein","SCO6841",7613335,7614387,null,"+",350,21225133,null,"COG1637","pfam01939","Protein of unknown function DUF91. The f","COG3586,COG1637","Uncharacterized conserved protein [Funct ; Predicted nuclease of the RecB family [D"]
["hypothetical protein","SCO6842",7614564,7615928,null,"-",454,21225134,null,null,"pfam03771,pfam03771,pfam00496","Domain of unknown function (DUF317). Thi ; Domain of unknown function (DUF317). Thi ; Bacterial extracellular solute-binding p","COG1801","Uncharacterized conserved protein [Funct"]
["COG0305L, hypothetical protein","SCO6843",7615994,7617112,null,"-",372,21225135,null,"COG0305","pfam00772,pfam00772","DnaB-like helicase N terminal domain. Th ; DnaB-like helicase N terminal domain. Th","COG0305,COG0305","Replicative DNA helicase [DNA replicatio ; Replicative DNA helicase [DNA replicatio"]
["COG0270L, DNA methylase","SCO6844",7617112,7618383,null,"-",423,21225136,null,"COG0270","pfam00145","C-5 cytosine-specific DNA methylase. ","COG0270","Site-specific DNA methylase [DNA replica"]
["hypothetical protein","SCO6845",7618380,7619000,null,"-",206,21225137,null,null,"cd01713","This domain is found in phosphoadenosine"]
["hypothetical protein","SCO6846",7619557,7619880,null,"-",107,21225138,null,null,"pfam03771","Domain of unknown function (DUF317). Thi"]
["hypothetical protein","SCO6847",7620290,7620910,null,"-",206,21225139,{"$nulls":4},"COG0312","Predicted Zn-dependent proteases and the"]
["hypothetical protein","SCO6848",7621003,7621461,null,"-",152,21225140]
["COG3505U, hypothetical protein","SCO6849",7621458,7623185,null,"-",575,32141315,null,"COG3505","pfam02534","TraG/TraD family. These proteins contain","COG3505","Type IV secretory pathway, VirD4 compone"]
["hypothetical protein","SCO6850",7623285,7624064,null,"-",259,21225141,null,null,"pfam03771,pfam03771","Domain of unknown function (DUF317). Thi ; Domain of unknown function (DUF317). Thi","COG5178","U5 snRNP spliceosome subunit [RNA proces"]
[{"$nulls":4},"#",15922263,"Sulfolobus_tokodaii","/am/ftp-genomes/Bacteria/Sulfolobus_tokodaii/NC_003106.ptt"]
["hypothetical protein","ST1937",1943838,1944395,null,"-",185,15922253]
["COG0675L, hypothetical protein","ST1938",1944470,1945795,null,"-",441,15922254,null,"COG0675","pfam05136","Phage portal protein, lambda family. Thi","COG0675","Transposase and inactivated derivatives "]
["COG2452L, hypothetical protein","ST1939",1945767,1946375,null,"-",202,15922255,null,"COG2452","cd03769,cd04762","Serine Recombinase (SR) family, IS607-li ; Proteins in this family mostly have a tr","COG2452","Predicted site-specific integrase-resolv"]
["hypothetical protein","ST1940",1946619,1947122,null,"-",167,15922256,null,null,"cd03322","The starvation sensing protein RpsA from"]
["COG1106R, hypothetical protein","ST1941",1947123,1948187,null,"-",354,15922257,null,"COG1106","pfam02463,cd00267","RecF/RecN/SMC N terminal domain. This do ; ABC (ATP-binding cassette) transporter n","COG1106","Predicted ATPases [General function pred"]
["COG3385L, hypothetical protein","ST1942",1948527,1949585,null,"-",352,15922258,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3385","FOG: Transposase and inactivated derivat"]
["COG1753S, hypothetical protein","STS208",1950215,1950436,null,"+",73,15922259,null,"COG1753","pfam02697","Uncharacterized ACR, COG1753. ","COG1753","Predicted antotoxin, copG family [Signal"]
["COG1487R, virulence-associated protein","ST1943",1950409,1950810,null,"+",133,15922260,null,"COG1487","pfam01850","PIN domain. This PIN (PilT N terminus) d","COG1487","Predicted nucleic acid-binding protein, "]
["COG0501O,COG2452L, hypothetical protein","ST1944",1951714,1952595,null,"+",293,15922261,null,"COG2452","cd04762,pfam01435,CHL00043","Proteins in this family mostly have a tr ; Peptidase family M48. ","COG2452,COG0501","Predicted site-specific integrase-resolv ; Zn-dependent protease with chaperone fun"]
["hypothetical protein","ST1945",1952579,1953592,null,"+",337,15922262,"???"]
["COG1431J, hypothetical protein","ST1946",1953593,1954990,null,"+",465,15922263,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1105","Fructose-1-phosphate kinase and related "]
["hypothetical protein","ST1947",1954995,1955969,null,"-",324,15922264,null,null,"pfam02463,pfam08450","RecF/RecN/SMC N terminal domain. This do ; SMP-30/Gluconolaconase/LRE-like region. ","COG3883","Uncharacterized protein conserved in bac"]
["hypothetical protein","ST1948",1956173,1957093,null,"-",306,15922265,{"$nulls":4},"COG2898","Uncharacterized conserved protein [Funct"]
["hypothetical protein","ST1949",1957418,1957825,null,"-",135,15922266,null,null,"pfam01609","Transposase DDE domain. Transposase prot"]
["hypothetical protein","ST1950",1958097,1958477,null,"-",126,15922267,null,null,"pfam04693","Archaeal putative transposase ISC1217. ","COG3355","Predicted transcriptional regulator [Tra"]
["COG2244R, hypothetical protein","ST1951",1959506,1960915,null,"-",469,15922268,null,"COG2244","pfam01943","Polysaccharide biosynthesis protein. Mem","COG2244","Membrane protein involved in the export "]
["hypothetical protein","ST1952",1961421,1962482,null,"+",353,15922269,null,null,"pfam04693,pfam01609","Archaeal putative transposase ISC1217. ","COG2998","ABC-type tungstate transport system, per"]
["COG2890J, hypothetical protein","ST1954",1962487,1962924,null,"-",145,15922270,null,null,"pfam05175","Methyltransferase small domain. This dom","COG2890","Methylase of polypeptide chain release f"]
["hypothetical protein","ST1955",1962902,1963213,null,"-",103,15922271,null,null,"cd00300","L-lactate dehydrogenases (LDH); member o","COG2890","Methylase of polypeptide chain release f"]
["COG2192O, nodulation protein","ST1956",1963215,1964729,null,"-",504,15922272,null,"COG2192","pfam02543","Carbamoyltransferase. This family consis","COG2192","Predicted carbamoyl transferase, NodU fa"]
["COG3385L, hypothetical protein","ST1957",1964886,1965950,null,"+",354,15922273,null,null,"pfam01609,pfam01008","Transposase DDE domain. Transposase prot ; Initiation factor 2 subunit family. This","COG3385","FOG: Transposase and inactivated derivat"]
[{"$nulls":4},"#",170077638,"Synechococcus_PCC_7002","/am/ftp-genomes/Bacteria/Synechococcus_PCC_7002/NC_010475.ptt"]
["COG0533O, putative DNA-binding/iron metalloprotein/AP endonuclease","SYNPCC7002_A1007",1040008,1041075,null,"-",355,170077628,null,"COG0533","pfam00814","Glycoprotease family. The Peptidase M22 ","COG0533","Metal-dependent proteases with possible "]
["photosystem I reaction center subunit III, PsaF","SYNPCC7002_A1008",1041231,1041740,null,"+",169,170077629,null,null,"pfam02507","Photosystem I reaction centre subunit II"]
["photosystem I reaction centre, subunit IX / PsaJ","SYNPCC7002_A1009",1041784,1041897,null,"+",37,170077630,null,null,"pfam01701","Photosystem I reaction centre subunit IX"]
["COG0344S, membrane protein","SYNPCC7002_A1010",1042257,1042904,null,"-",215,170077631,null,"COG0344","pfam02660","Domain of unknown function DUF. This fam","COG0344","Predicted membrane protein [Function unk"]
["hypothetical protein","SYNPCC7002_A1011",1042942,1044066,null,"-",374,170077632,null,null,"pfam08614,pfam01690,PHA00729","Autophagy protein 16 (ATG16). Autophagy  ; Potato leaf roll virus readthrough prote ; NTP-binding motif containing protein","COG2433,COG0297","Uncharacterized conserved protein [Funct ; Glycogen synthase [Carbohydrate transpor"]
["hypothetical protein","SYNPCC7002_A1012",1044129,1044533,null,"-",134,170077633,null,null,"pfam04298","Putative neutral zinc metallopeptidase. ","COG2738","Predicted Zn-dependent protease [General"]
["COG0841V, hydrophobe/amphiphile efflux-1 (HAE1) family protein","SYNPCC7002_A1013",1044719,1047859,null,"+",1046,170077634,null,"COG0841","pfam00873","AcrB/AcrD/AcrF family. Members of this f","COG0841","Cation/multidrug efflux pump [Defense me"]
["COG5401R, hypothetical protein","SYNPCC7002_A1014",1047882,1048520,null,"+",212,170077635,null,"COG5401","pfam10646,pfam05616","Sporulation and spore germination. The G ; Neisseria meningitidis TspB protein. Thi","COG5401","Spore germination protein [General funct"]
["COG1716T, FHA domain-containing protein","SYNPCC7002_A1015",1048533,1049831,null,"-",432,170077636,null,"COG1716","pfam00498,pfam04415","FHA domain. The FHA (Forkhead-associated ; Protein of unknown function (DUF515). Fa","COG1716","FOG: FHA domain [Signal transduction mec"]
["hypothetical protein","SYNPCC7002_A1016",1049976,1050095,null,"-",39,170077637]
["COG1431J, hypothetical protein","SYNPCC7002_A1017",1050247,1052094,null,"-",615,170077638,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG1746","Argonaute homolog, implicated in RNA met ; tRNA nucleotidyltransferase (CCA-adding "]
["COG1429H, magnesium chelatase subunit H","SYNPCC7002_A1018",1052582,1056574,null,"-",1330,170077639,null,"COG1429","pfam02514","CobN/Magnesium Chelatase. This family co","COG1429","Cobalamin biosynthesis protein CobN and "]
["hypothetical protein","SYNPCC7002_A1019",1056933,1057517,null,"+",194,170077640,null,null,"pfam03268","Caenorhabditis protein of unknown functi","COG4191","Signal transduction histidine kinase reg"]
["hypothetical protein","SYNPCC7002_A1020",1057556,1059031,null,"-",491,170077641]
["COG0795R, YjgP/YjgQ permease superfamily","SYNPCC7002_A1021",1059243,1060379,null,"+",378,170077642,null,"COG0795","pfam03739","Predicted permease YjgP/YjgQ family. Mem","COG0795","Predicted permeases [General function pr"]
["COG0021G, transketolase","SYNPCC7002_A1022",1060473,1062479,null,"-",668,170077643,null,"COG0021","pfam00456,pfam02779,pfam02780","Transketolase, thiamine diphosphate bind ; Transketolase, pyrimidine binding domain ; Transketolase, C-terminal domain. The C-","COG0021","Transketolase [Carbohydrate transport an"]
["COG0304IQ, 3-oxoacyl-(acyl carrier protein) synthase II","SYNPCC7002_A1023",1062649,1063905,null,"-",418,170077644,null,"COG0304","cd00834","Beta-ketoacyl-acyl carrier protein (ACP)","COG0304","3-oxoacyl-(acyl-carrier-protein) synthas"]
["COG0236IQ, acyl carrier protein","SYNPCC7002_A1024",1064055,1064300,null,"-",81,170077645,null,"COG0236","CHL00124","acyl carrier protein; Validated","COG0236","Acyl carrier protein [Lipid metabolism /"]
["COG0154J, aspartyl/glutamyl-tRNA amidotransferase subunit A","SYNPCC7002_A1025",1064549,1066006,null,"+",485,170077646,null,"COG0154","pfam01425","Amidase. ","COG0154","Asp-tRNAAsn/Glu-tRNAGln amidotransferase"]
["COG0222J, ribosomal protein L7/L12","SYNPCC7002_A1026",1066220,1066606,null,"-",128,170077647,null,"COG0222","CHL00083","ribosomal protein L12","COG0222","Ribosomal protein L7/L12 [Translation, r"]
["COG0244J, 50S ribosomal protein L10","SYNPCC7002_A1027",1066694,1067221,null,"-",175,170077648,null,"COG0244","cd05797","Ribosomal protein L10 family, L10 subfam","COG0244","Ribosomal protein L10 [Translation, ribo"]
[{"$nulls":4},"#",56752529,"Synechococcus_elongatus_PCC_6301","/am/ftp-genomes/Bacteria/Synechococcus_elongatus_PCC_6301/NC_006576.ptt"]
["COG1217T, N-terminus of GTP-binding protein TypA-like protein","syc2510_d",2680632,2681738,null,"+",368,56752519,null,"COG1217","cd01891,cd03691","TypA (tyrosine phosphorylated protein A) ; BipA_TypA_II: domain II of BipA (also ca","COG1217","Predicted membrane GTPase involved in st"]
["COG1217T, C-terminus of GTP-binding protein TypA-like protein","syc2511_d",2681747,2682424,null,"+",225,56752520,null,"COG1217","cd03710","BipA_TypA_C: a C-terminal portion of Bip","COG1217","Predicted membrane GTPase involved in st"]
["hypothetical protein","syc2512_d",2682511,2683302,null,"+",263,56752521,null,null,"pfam07787,pfam04928","Protein of unknown function (DUF1625). S ; Poly(A) polymerase central domain. The c"]
["COG0348C,COG3829KT, nitrogen assimilation regulatory protein","syc2513_d",2683467,2685983,null,"+",838,56752522,null,"COG0664","pfam00158,cd00038,cd00919","Sigma-54 interaction domain. ","COG1221,COG0348,COG0664","Transcriptional regulators containing an ; Polyferredoxin [Energy production and co ; cAMP-binding proteins - catabolite gene "]
["hypothetical protein","syc2514_c",2686041,2686370,null,"-",109,56752523,null,null,"pfam10693","Protein of unknown function (DUF2499). M","COG1540","Uncharacterized proteins, homologs of la"]
["COG2327S, hypothetical protein","syc2515_d",2686428,2687447,null,"+",339,56752524,null,"COG2327","pfam04230","Polysaccharide pyruvyl transferase. Pyru","COG2327","Polysaccharide pyruvyl transferase famil"]
["COG3585H, molybdenum-pterin binding protein","syc2516_c",2687507,2687932,null,"-",141,56752525,null,"COG3585","pfam03459,pfam01402","TOBE domain. The TOBE domain (Transport- ; Ribbon-helix-helix protein, copG family.","COG3585","Molybdopterin-binding protein [Coenzyme "]
["COG0725P, molybdate-binding periplasmic protein","syc2517_d",2688023,2688838,null,"+",271,56752526,null,"COG0725","pfam01547","Bacterial extracellular solute-binding p","COG0725","ABC-type molybdate transport system, per"]
["COG4149P, ATP-binding protein of molybdate ABC transporter","syc2518_d",2688835,2689500,null,"+",221,56752527,null,"COG4149","cd06261","Transmembrane subunit (TM) found in Peri","COG4149","ABC-type molybdate transport system, per"]
["COG0479C, succinate dehydrogenase/fumarate reductase iron-sulfur subunit","syc2519_d",2689556,2690317,null,"+",253,56752528,null,"COG0479","cd01916,cd00207","Acetyl-CoA synthase (ACS), also known as ; 2Fe-2S iron-sulfur cluster binding domai","COG0479","Succinate dehydrogenase/fumarate reducta"]
["COG1431J, hypothetical protein","syc2520_d",2690440,2692647,null,"+",735,56752529,"PIWI domain containing protein","COG1431","cd04659,pfam00739","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Trans-activation protein X. This protein","COG1431","Argonaute homolog, implicated in RNA met"]
["Rubisco chaperonin","syc2521_d",2692684,2693169,null,"+",161,56752530,null,null,"pfam02341","RbcX protein. The RBCX protein has been "]
["COG0518F, amidotransferase","syc2522_d",2693159,2693839,null,"+",226,56752531,null,"COG0518","cd01741","This group contains a subgroup of protei","COG0518","GMP synthase - Glutamine amidotransferas"]
["hypothetical protein","syc2523_d",2694226,2694591,null,"+",121,56752532,null,null,"pfam09379","FERM N-terminal domain. This domain is t","COG0308","Aminopeptidase N [Amino acid transport a"]
["hypothetical protein","syc2524_c",2694741,2695043,null,"-",100,56752533]
["COG0596R, hypothetical protein","syc2525_c",2695081,2695791,null,"-",236,56752534,null,"COG3208","pfam00561,pfam05985","alpha/beta hydrolase fold. This catalyti ; Ethanolamine ammonia-lyase light chain (","COG2267","Lysophospholipase [Lipid metabolism]"]
["COG0716C, flavodoxin FldA","syc0001_c",2695881,138,null,"-",170,56752535,null,"COG0716","pfam00258","Flavodoxin. ","COG0716","Flavodoxins [Energy production and conve"]
["iron-stress chlorophyll-binding protein","syc0002_c",323,1351,null,"-",342,56750011,null,null,"pfam00421,pfam00421","Photosystem II protein. "]
["COG4691R, panthotenate metabolism flavoprotein","syc0003_d",1769,2023,null,"+",84,56750012,null,"COG4691",null,null,"COG4691","Plasmid stability protein [General funct"]
["COG1487R, plasmid stabilization protein StbB-like protein","syc0004_d",2026,2481,null,"+",151,56750013,null,"COG1487","pfam01850","PIN domain. This PIN (PilT N terminus) d","COG1487","Predicted nucleic acid-binding protein, "]
["COG0557K, putative ribonuclease II","syc0005_d",2459,3856,null,"+",465,56750014,null,"COG0557","pfam00773","RNB domain. This domain is the catalytic","COG0557","Exoribonuclease R [Transcription]"]
[{"$nulls":4},"#",81300343,"Synechococcus_elongatus_PCC_7942","/am/ftp-genomes/Bacteria/Synechococcus_elongatus_PCC_7942/NC_007604.ptt"]
["COG0086K, DNA-directed RNA polymerase subunit beta'","Synpcc7942_1524",1579094,1583050,null,"+",1318,81300333,null,"COG0086","CHL00117","RNA polymerase beta&apos;&apos; subunit;","COG0086,COG0086","DNA-directed RNA polymerase, beta' subun ; DNA-directed RNA polymerase, beta' subun"]
["COG1217T, GTP-binding protein TypA","Synpcc7942_1525",1583407,1585200,null,"+",597,81300334,null,"COG1217","cd01891,cd03691,cd03710","TypA (tyrosine phosphorylated protein A) ; BipA_TypA_II: domain II of BipA (also ca ; BipA_TypA_C: a C-terminal portion of Bip","COG1217","Predicted membrane GTPase involved in st"]
["hypothetical protein","Synpcc7942_1526",1585287,1586078,null,"+",263,81300335,null,null,"pfam07787,pfam04928","Protein of unknown function (DUF1625). S ; Poly(A) polymerase central domain. The c"]
["COG0348C,COG3829KT, nitrogen assimilation regulatory protein","Synpcc7942_1527",1586243,1588759,null,"+",838,81300336,null,"COG0664","pfam00158,cd00038,cd00919","Sigma-54 interaction domain. ","COG1221,COG0348,COG0664","Transcriptional regulators containing an ; Polyferredoxin [Energy production and co ; cAMP-binding proteins - catabolite gene "]
["hypothetical protein","Synpcc7942_1528",1588817,1589146,null,"-",109,81300337,null,null,"pfam10693","Protein of unknown function (DUF2499). M","COG1540","Uncharacterized proteins, homologs of la"]
["COG2327S, hypothetical protein","Synpcc7942_1529",1589204,1590223,null,"+",339,81300338,null,"COG2327","pfam04230","Polysaccharide pyruvyl transferase. Pyru","COG2327","Polysaccharide pyruvyl transferase famil"]
["COG3585H, molybdenum-pterin binding domain-containing protein","Synpcc7942_1530",1590283,1590708,null,"-",141,81300339,null,"COG3585","pfam03459,pfam01402","TOBE domain. The TOBE domain (Transport- ; Ribbon-helix-helix protein, copG family.","COG3585","Molybdopterin-binding protein [Coenzyme "]
["COG0725P, molybdenum ABC transporter, periplasmic molybdate-binding protein","Synpcc7942_1531",1590799,1591614,null,"+",271,81300340,null,"COG0725","pfam01547","Bacterial extracellular solute-binding p","COG0725","ABC-type molybdate transport system, per"]
["COG4149P, molybdate ABC transporter permease","Synpcc7942_1532",1591611,1592276,null,"+",221,81300341,null,"COG4149","cd06261","Transmembrane subunit (TM) found in Peri","COG4149","ABC-type molybdate transport system, per"]
["COG0479C, succinate dehydrogenase/fumarate reductase iron-sulfur subunit","Synpcc7942_1533",1592254,1593093,null,"+",279,81300342,null,"COG0479","cd01916,cd00207","Acetyl-CoA synthase (ACS), also known as ; 2Fe-2S iron-sulfur cluster binding domai","COG0479","Succinate dehydrogenase/fumarate reducta"]
["COG1431J, hypothetical protein","Synpcc7942_1534",1593215,1595422,null,"+",735,81300343,"PIWI domain containing protein","COG1431","cd04659,pfam00739","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Trans-activation protein X. This protein","COG1431","Argonaute homolog, implicated in RNA met"]
["Rubisco chaperonin","Synpcc7942_1535",1595486,1595944,null,"+",152,81300344,null,null,"pfam02341","RbcX protein. The RBCX protein has been "]
["COG0518F, amidotransferase","Synpcc7942_1536",1595934,1596614,null,"+",226,81300345,null,"COG0518","cd01741","This group contains a subgroup of protei","COG0518","GMP synthase - Glutamine amidotransferas"]
["hypothetical protein","Synpcc7942_1537",1596668,1596877,null,"+",69,81300346,{"$nulls":4},"COG1487","Predicted nucleic acid-binding protein, "]
["hypothetical protein","Synpcc7942_1538",1596968,1597366,null,"+",132,81300347,null,null,"pfam09379","FERM N-terminal domain. This domain is t","COG0308","Aminopeptidase N [Amino acid transport a"]
["hypothetical protein","Synpcc7942_1539",1597516,1597818,null,"-",100,81300348]
["COG0596R, hypothetical protein","Synpcc7942_1540",1597856,1598566,null,"-",236,81300349,null,"COG3208","pfam00561,pfam05985","alpha/beta hydrolase fold. This catalyti ; Ethanolamine ammonia-lyase light chain (","COG2267","Lysophospholipase [Lipid metabolism]"]
["COG0716C, flavodoxin FldA","Synpcc7942_1541",1598656,1599168,null,"-",170,81300350,null,"COG0716","pfam00258","Flavodoxin. ","COG0716","Flavodoxins [Energy production and conve"]
["iron-stress chlorophyll-binding protein","Synpcc7942_1542",1599353,1600381,null,"-",342,81300351,null,null,"pfam00421,pfam00421","Photosystem II protein. "]
["COG0557K, putative ribonuclease II","Synpcc7942_1543",1600652,1600777,null,"+",41,81300352,null,null,"pfam00773","RNB domain. This domain is the catalytic","COG4776","Exoribonuclease II [Transcription]"]
["COG4691R, panthotenate metabolism flavoprotein","Synpcc7942_1544",1600802,1601053,null,"+",83,81300353,null,"COG4691",null,null,"COG4691","Plasmid stability protein [General funct"]
[{"$nulls":4},"#",116749911,"Syntrophobacter_fumaroxidans_MPOB","/am/ftp-genomes/Bacteria/Syntrophobacter_fumaroxidans_MPOB/NC_008554.ptt"]
["COG1691R, hypothetical protein","Sfum_2473",3052884,3053672,null,"-",262,116749901,null,"COG1691","pfam00731","AIR carboxylase. Members of this family ","COG1691","NCAIR mutase (PurE)-related proteins [Ge"]
["COG1519M, 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein","Sfum_2474",3053675,3054979,null,"-",434,116749902,null,"COG1519","pfam04413","3-Deoxy-D-manno-octulosonic-acid transfe","COG1519","3-deoxy-D-manno-octulosonic-acid transfe"]
["COG0017J, asparaginyl-tRNA synthetase","Sfum_2475",3055273,3056673,null,"+",466,116749903,null,"COG0017","cd00776,cd04318","Asx tRNA synthetase (AspRS/AsnRS) class  ; EcAsnRS_like_N: N-terminal, anticodon re","COG0017","Aspartyl/asparaginyl-tRNA synthetases [T"]
["COG1107L, hypothetical protein","Sfum_2476",3056931,3057143,null,"+",70,116749904,{"$nulls":4},"COG1107","Archaea-specific RecJ-like exonuclease, "]
["hypothetical protein","Sfum_2477",3057174,3057743,null,"+",189,116749905,null,null,"cd06153","This group of proteins belong to a large"]
["COG2199T, diguanylate cyclase with GAF sensor","Sfum_2478",3057789,3058928,null,"-",379,116749906,null,"COG3159","cd01949,pfam04340","Diguanylate-cyclase (DGC) or GGDEF domai ; Protein of unknown function, DUF484. Thi","COG2199,COG3159","c-di-GMP synthetase (diguanylate cyclase ; Uncharacterized protein conserved in bac"]
["COG1611R, hypothetical protein","Sfum_2479",3058959,3059435,null,"-",158,116749907,null,"COG1611","pfam03641,pfam08937","Possible lysine decarboxylase. The membe ; MTH538 TIR-like domain (DUF1863). This d","COG1611","Predicted Rossmann fold nucleotide-bindi"]
["COG2518O, protein-L-isoaspartate O-methyltransferase","Sfum_2480",3059439,3060083,null,"-",214,116749908,null,"COG2518","pfam01135","Protein-L-isoaspartate(D-aspartate) O-me","COG2518","Protein-L-isoaspartate carboxylmethyltra"]
["COG1994R, hypothetical protein","Sfum_2481",3060570,3060971,null,"+",133,116749909,null,null,"cd06164","SpoIVFB Site-2 protease (S2P), a zinc me","COG1994","Zn-dependent proteases [General function"]
["hypothetical protein","Sfum_2482",3061297,3062553,null,"-",418,116749910,"Rec-like endonuclease fused to uncharacterized N-terminal domain"]
["COG1431J, piwi domain-containing protein","Sfum_2483",3062541,3064856,null,"-",771,116749911,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG4976,COG0841","Argonaute homolog, implicated in RNA met ; Predicted methyltransferase (contains TP ; Cation/multidrug efflux pump [Defense me"]
["hypothetical protein","Sfum_2484",3065319,3065807,null,"+",162,116749912]
["hypothetical protein","Sfum_2486",3066302,3067534,null,"-",410,116749913,null,"COG1835","pfam01757","Acyltransferase family. This family incl","COG1835","Predicted acyltransferases [Lipid metabo"]
["COG3385L, ISGsu1, transposase","Sfum_2487",3067598,3068137,null,"-",179,116749914]
["COG0517R,COG1994R, peptidase M50","Sfum_2488",3069021,3070172,null,"+",383,116749915,null,"COG1994","cd06164,cd04612","SpoIVFB Site-2 protease (S2P), a zinc me ; This cd contains two tandem repeats of t","COG1994,COG2524","Zn-dependent proteases [General function ; Predicted transcriptional regulator, con"]
["hypothetical protein","Sfum_2489",3070502,3070789,null,"+",95,116749916,null,null,"pfam02249","Methyl-coenzyme M reductase alpha subuni"]
["hypothetical protein","Sfum_2490",3070781,3072703,null,"-",640,116749917,null,null,"pfam10070","Uncharacterized protein conserved in bac"]
["COG1918P, FeoA family protein","Sfum_2491",3072849,3073139,null,"+",96,116749918,null,"COG1918","pfam04023","FeoA domain. This family includes FeoA a","COG1918","Fe2+ transport system protein A [Inorgan"]
["COG1918P, FeoA family protein","Sfum_2492",3073237,3073479,null,"+",80,116749919,null,"COG1918","pfam04023","FeoA domain. This family includes FeoA a","COG1918","Fe2+ transport system protein A [Inorgan"]
["COG0370P, ferrous iron transport protein B","Sfum_2493",3073476,3075707,null,"+",743,116749920,null,"COG0370","cd01879,pfam02421,pfam07664,pfam07670,pfam07670","Ferrous iron transport protein B (FeoB)  ; Ferrous iron transport protein B. Escher ; Ferrous iron transport protein B C termi ; Nucleoside recognition. This region in t ; Nucleoside recognition. This region in t","COG0370","Fe2+ transport system protein B [Inorgan"]
["COG0337E, 3-dehydroquinate synthase","Sfum_2494",3076213,3077304,null,"+",363,116749921,null,"COG0337","pfam01761","3-dehydroquinate synthase. The 3-dehydro","COG0337","3-dehydroquinate synthetase [Amino acid "]
[{"$nulls":4},"#",212224657,"Thermococcus_onnurineus_NA1","/am/ftp-genomes/Bacteria/Thermococcus_onnurineus_NA1/NC_011529.ptt"]
["hypothetical protein","TON_1496",1368053,1368289,null,"+",78,212224647,null,null,"pfam00221","Phenylalanine and histidine ammonia-lyas"]
["COG1980G, thermophile-specific fructose-1,6-bisphosphatase","TON_1497",1368397,1369524,null,"+",375,212224648,null,"COG1980","pfam01950","Fructose-1,6-bisphosphatase. This is a f","COG1980","Archaeal fructose 1,6-bisphosphatase [Ca"]
["COG2414C, tungsten-containing glyceraldehyde-3-phosphate:ferredoxin oxidoreductase","TON_1498",1369681,1371642,null,"+",653,212224649,null,"COG2414","pfam02730,pfam01314","Aldehyde ferredoxin oxidoreductase, N-te ; Aldehyde ferredoxin oxidoreductase, doma","COG2414","Aldehyde:ferredoxin oxidoreductase [Ener"]
["COG1689S, hypothetical protein","TON_1499",1371745,1373418,null,"-",557,212224650,null,"COG1689","cd00688","This group contains class II terpene cyc","COG1689,COG1689","Uncharacterized protein conserved in arc ; Uncharacterized protein conserved in arc"]
["hypothetical protein","TON_1500",1373454,1374305,null,"-",283,212224651]
["COG1233Q, Hypothetical oxidoreductase","TON_1501",1374537,1375799,null,"+",420,212224652,null,"COG1233","pfam01593","Flavin containing amine oxidoreductase. ","COG1233","Phytoene dehydrogenase and related prote"]
["COG0549E, carbamate kinase-like carbamoyl phosphate synthetase","TON_1502",1375920,1376867,null,"+",315,212224653,null,"COG0549","cd04235","AAK_CK: Carbamate kinase (CK) catalyzes ","COG0549","Carbamate kinase [Amino acid transport a"]
["COG0616OU, hypothetical protein","TON_1503",1376915,1377757,null,"+",280,212224654,null,"COG0616","pfam01972","Protein of unknown function DUF114. The ","COG0616","Periplasmic serine proteases (ClpP class"]
["COG1340S, hypothetical protein","TON_1504",1377906,1378808,null,"+",300,212224655,null,"COG1340","pfam02463,pfam09973","RecF/RecN/SMC N terminal domain. This do ; Predicted membrane protein (DUF2208). Th","COG1340","Uncharacterized archaeal coiled-coil pro"]
["COG0587L,COG1549J, RNA-binding protein","TON_1505",1378818,1380524,null,"+",568,212224656,null,"COG1549","pfam01472","PUA domain. The PUA domain named after P","COG1549","Queuine tRNA-ribosyltransferases, contai"]
["COG1431J, hypothetical protein","TON_1506",1380525,1382825,null,"-",766,212224657,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["COG4031R, hypothetical protein","TON_1507",1382924,1383220,null,"+",98,212224658,null,"COG4031","pfam09876","Predicted metal-binding protein (DUF2103","COG4031","Predicted metal-binding protein [General"]
["COG2428S, hypothetical protein","TON_1508",1383799,1384434,null,"-",211,212224659,null,"COG2428","pfam04252","Predicted SAM-dependent RNA methyltransf","COG2428","Uncharacterized conserved protein [Funct"]
["COG0500QR, ubiE ubiquinone/menaquinone biosynthesis methyltransferase","TON_1509",1384238,1385170,null,"+",310,212224660,null,"COG0500","pfam08241,CHL00006,pfam05463","Methyltransferase domain. Members of thi ; RNA polymerase beta&apos;&apos; subunit","COG2226","Methylase involved in ubiquinone/menaqui"]
["COG1522K, transcription regulator","TON_1510",1385875,1386300,null,"-",141,212224661,null,"COG1522","smart00344","helix_turn_helix ASNC type; AsnC: an aut","COG1522","Transcriptional regulators [Transcriptio"]
["COG2265J, 23S rRNA (uracil-5-)-methyltransferase","TON_1511",1386364,1387623,null,"-",419,212224662,null,"COG2265","pfam05958","tRNA (Uracil-5-)-methyltransferase. This","COG2265","SAM-dependent methyltransferases related"]
["hypothetical protein","TON_1512",1387731,1387946,null,"+",71,212224663,null,null,"pfam01978","Sugar-specific transcriptional regulator","COG1378","Predicted transcriptional regulators [Tr"]
["COG0461F, orotate phosphoribosyltransferase","TON_1513",1388778,1389335,null,"-",185,212224664,null,"COG0461","pfam00156","Phosphoribosyl transferase domain. This ","COG0461","Orotate phosphoribosyltransferase [Nucle"]
["hypothetical membrane protein, conserved","TON_1514",1389443,1390150,null,"+",235,212224665,null,null,"smart00053,pfam05297","Dynamin, GTPase; Large GTPases that medi ; Herpesvirus latent membrane protein 1 (L","COG2339","Membrane proteinase, regulator of anti-s"]
["COG1793L, ATP-dependent DNA ligase","TON_1515",1390140,1391828,null,"-",562,212224666,null,"COG1793","pfam01068,pfam04675,pfam04679","ATP dependent DNA ligase domain. This do ; DNA ligase N terminus. This region is fo ; ATP dependent DNA ligase C terminal regi","COG1793","ATP-dependent DNA ligase [DNA replicatio"]
["COG1829R, GHMP kinase","TON_1516",1391869,1392771,null,"-",300,212224667,null,"COG1829","pfam00288","GHMP kinases N terminal domain. This fam","COG1829","Predicted archaeal kinase (sugar kinase "]
[{"$nulls":4},"#",22298491,"Thermosynechococcus_elongatus","/am/ftp-genomes/Bacteria/Thermosynechococcus_elongatus/NC_004113.ptt"]
["COG1077D, rod shape-determining protein MreB","tlr0938",959437,960477,null,"+",346,22298481,null,"COG1077","pfam06723","MreB/Mbl protein. This family consists o","COG1077","Actin-like ATPase involved in cell morph"]
["COG1792M, rod shape-determining protein","tlr0939",960491,961255,null,"+",254,22298482,null,"COG1792","pfam04085,pfam04977","rod shape-determining protein MreC. MreC ; Septum formation initiator. DivIC from B","COG1792","Cell shape-determining protein [Cell env"]
["hypothetical protein","tlr0940",961221,961748,null,"+",175,22298483,null,"COG2891","pfam04093","rod shape-determining protein MreD. MreD","COG2891","Cell shape-determining protein [Cell env"]
["hypothetical protein","tll0941",962075,962599,null,"-",174,22298484,null,null,"pfam07176","Alpha/beta hydrolase of unknown function"]
["COG2265J, putative RNA methyltransferase","tlr0942",962729,964078,null,"+",449,22298485,null,"COG2265","pfam05958,pfam01938","tRNA (Uracil-5-)-methyltransferase. This ; TRAM domain. This small domain has no kn","COG2265","SAM-dependent methyltransferases related"]
["COG1045E, carbon dioxide concentrating mechanism protein","tll0943",964061,964723,null,"-",220,22298486,null,"COG0663","cd04645,pfam05110","Gamma carbonic anhydrase-like: This fami ; AF-4 proto-oncoprotein. This family cons","COG1044,COG3115","UDP-3-O-[3-hydroxymyristoyl]"]
["COG0663R,COG4451C, carbon dioxide concentrating mechanism protein","tll0944",964745,966703,null,"-",652,22298487,null,"COG0663","cd00710,cd00307,cd00307,cd00307,cd00307","Gamma carbonic anhydrases (CA): Carbonic ; Ribulose bisphosphate carboxylase/oxygen ; Ribulose bisphosphate carboxylase/oxygen ; Ribulose bisphosphate carboxylase/oxygen ; Ribulose bisphosphate carboxylase/oxygen","COG0663,COG4451,COG4451,COG4451,COG4451","Carbonic anhydrases/acetyltransferases,  ; Ribulose bisphosphate carboxylase small  ; Ribulose bisphosphate carboxylase small  ; Ribulose bisphosphate carboxylase small  ; Ribulose bisphosphate carboxylase small "]
["COG4576QC, carbon dioxide concentrating mechanism protein","tll0945",966722,967021,null,"-",99,22298488,null,"COG4576","pfam03319","Ethanolamine utilisation protein EutN/ca","COG4576","Carbon dioxide concentrating mechanism/c"]
["COG4577QC, carbon dioxide concentrating mechanism protein","tll0946",967021,967362,null,"-",113,22298489,null,"COG4577","pfam00936,cd06144","BMC domain. Bacterial microcompartments  ; This subfamily is composed of RNA exonuc","COG4577","Carbon dioxide concentrating mechanism/c"]
["COG4577QC, carbon dioxide concentrating mechanism protein","tll0947",967460,967768,null,"-",102,22298490,null,"COG4577","pfam00936","BMC domain. Bacterial microcompartments ","COG4577","Carbon dioxide concentrating mechanism/c"]
["COG1431J, hypothetical protein","tll0948",968180,970450,null,"-",756,22298491,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["COG0810M, hypothetical protein","tlr0949",970494,971612,null,"+",372,22298492,null,null,"pfam09731,pfam04395","Mitochondrial inner membrane protein. Mi ; Poxvirus B22R protein. ","COG5373,COG3456","Predicted membrane protein [Function unk ; Predicted component of the type VI prote"]
["COG0661R, hypothetical protein","tll0950",971548,973494,null,"-",648,22298493,null,"COG0661","pfam03109,pfam06176,pfam07055","ABC1 family. This family includes ABC1 f ; Lipopolysaccharide core biosynthesis pro ; Short-chain alcohol dehydrogenase. This ","COG0661","Predicted unusual protein kinase [Genera"]
["COG1091M, dTDP-6-deoxy-L-mannose-dehydrogenase","tlr0951",973525,974439,null,"+",304,22298494,null,"COG1091","pfam04321","RmlD substrate binding domain. L-rhamnos","COG1091","dTDP-4-dehydrorhamnose reductase [Cell e"]
["COG1197LK, transcription-repair coupling factor","tll0952",974436,977864,null,"-",1142,22298495,null,"COG1197","pfam02559,pfam00270,pfam03461,cd00079","CarD-like/TRCF domain. CarD is a Myxococ ; DEAD/DEAH box helicase. Members of this  ; TRCF domain. ","COG1197","Transcription-repair coupling factor (su"]
["COG0805U, putative sec-independent protein translocase","tlr0953",978044,978865,null,"+",273,22298496,null,"COG0805","CHL00182","Sec-independent translocase component C;","COG0805","Sec-independent protein secretion pathwa"]
["COG4577QC, carbon dioxide concentrating mechanism protein","tlr0954",979036,979395,null,"+",119,22298497,null,"COG4577","pfam00936","BMC domain. Bacterial microcompartments ","COG4577","Carbon dioxide concentrating mechanism/c"]
["COG0465O, phycobilisome small core linker polypeptide","tsl0955",979541,979744,null,"-",67,22298498,null,null,"pfam01383","CpcD/allophycocyanin linker domain. "]
["allophycocyanin beta subunit","tll0956",979887,980372,null,"-",161,22298499,null,null,"CHL00088","allophycocyanin beta subunit"]
["allophycocyanin alpha subunit","tll0957",980437,980922,null,"-",161,22298500,null,null,"CHL00086","allophycocyanin alpha subunit","COG4166","ABC-type oligopeptide transport system, "]
["hypothetical protein","tll0958",981152,981472,null,"-",106,22298501]
[{"$nulls":4},"#",46255097,"Thermus_thermophilus_HB27","/am/ftp-genomes/Bacteria/Thermus_thermophilus_HB27/NC_005838.ptt"]
["hypothetical protein","TT_P0016",13418,13780,null,"+",120,46255087,null,null,"pfam04916,pfam08602","Phospholipase B. Phospholipase B (PLB) c ; Mgr1-like, i-AAA protease complex subuni"]
["COG0007H, uroporphyrin-III C-methyltransferase","TT_P0017",13777,14484,null,"+",235,46255088,null,"COG0007","pfam00590","Tetrapyrrole (Corrin/Porphyrin) Methylas","COG0007","Uroporphyrinogen-III methylase [Coenzyme"]
["COG0778C, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase","TT_P0018",14450,15097,null,"+",215,46255089,null,"COG0778","cd02145","Subfamily of the nitroreductase family t","COG0778","Nitroreductase [Energy production and co"]
["COG1270H, cbiB protein","TT_P0019",15094,15942,null,"+",282,46255090,null,"COG1270","pfam03186","CobD/Cbib protein. This family includes ","COG1270","Cobalamin biosynthesis protein CobD/CbiB"]
["COG2250S, hypothetical protein","TT_P0020",15946,16371,null,"+",141,46255091,null,"COG2250","pfam05168","HEPN domain. ","COG2250","Uncharacterized conserved protein relate"]
["COG1708R, hypothetical protein","TT_P0021",16310,16639,null,"+",109,46255092,null,"COG1708","pfam01909","Nucleotidyltransferase domain. Members o","COG1669","Predicted nucleotidyltransferases [Gener"]
["COG0079E, histidinol-phosphate aminotransferase","TT_P0022",16676,17683,null,"+",335,46255093,null,"COG0079","cd00609","Aspartate aminotransferase family. This ","COG0079","Histidinol-phosphate/aromatic aminotrans"]
["COG1492H,COG2087H, cobyric acid synthase/cobinamide kinase/cobinamide phosphate guanylyltransferase","TT_P0023",17888,19906,null,"+",672,46255094,null,"COG1492","cd00544,cd01750,pfam01656","Adenosylcobinamide kinase / adenosylcobi ; Type 1 glutamine amidotransferase (GATas ; CobQ/CobB/MinD/ParA nucleotide binding d","COG1492,COG2087","Cobyric acid synthase [Coenzyme metaboli ; Adenosyl cobinamide kinase/adenosyl cobi"]
["COG1785P, alkaline phosphatase","TT_P0024",19903,21408,null,"-",501,46255095,null,"COG1785","cd00016,cd00016","Alkaline phosphatase homologues; alkalin ; Alkaline phosphatase homologues; alkalin","COG1785","Alkaline phosphatase [Inorganic ion tran"]
["COG1820G, N-acetylglucosamine-6-phosphate deacetylase","TT_P0025",21474,22541,null,"+",355,46255096,null,"COG1820","cd00854","N-acetylglucosamine-6-phosphate deacetyl","COG1820","N-acetylglucosamine-6-phosphate deacetyl"]
["COG0052J,COG1431J, hypothetical protein","TT_P0026",22997,25054,null,"-",685,46255097,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["COG0215J, hypothetical protein","TT_P0027",25238,25633,null,"+",131,46255098,null,null,"pfam02635","DsrE/DsrF-like family. DsrE is a small s","COG1553","Uncharacterized conserved protein involv"]
["COG0496R, survival protein surE","TT_P0028",25702,26436,null,"-",244,46255099,null,"COG0496","pfam01975","Survival protein SurE. Escherichia coli ","COG0496","Predicted acid phosphatase [General func"]
["COG1082G, hypothetical protein","TT_P0029",26446,27210,null,"-",254,46255100,null,"COG1082","cd00019","AP endonuclease family 2; These endonucl","COG0648","Endonuclease IV [DNA replication, recomb"]
["COG0800G, putative KHG/KDPG aldolase","TT_P0030",27480,28025,null,"+",181,46255101,null,"COG0800","pfam01081","KDPG and KHG aldolase. This family inclu","COG0800","2-keto-3-deoxy-6-phosphogluconate aldola"]
["COG1638G, ABC transporter, periplasmic substrate-binding protein, putative","TT_P0031",28022,28708,null,"+",228,46255102,null,"COG1638","pfam03480","Bacterial extracellular solute-binding p","COG1638","TRAP-type C4-dicarboxylate transport sys"]
["COG3090G, transporter","TT_P0032",28750,29211,null,"+",153,46255103,null,"COG3090","pfam04290","Tripartite ATP-independent periplasmic t","COG3090","TRAP-type C4-dicarboxylate transport sys"]
["COG1593G, C4-dicarboxylate transporter","TT_P0033",29214,30497,null,"+",427,46255104,null,"COG1593","pfam06808","DctM-like transporters. This family cont","COG1593","TRAP-type C4-dicarboxylate transport sys"]
["COG1028IQR, putative oxidoreductase","TT_P0034",30494,31198,null,"+",234,46255105,null,"COG1028","pfam00106","short chain dehydrogenase. This family c","COG1028","Dehydrogenases with different specificit"]
["COG2055C, dehydrogenase","TT_P0035",31195,32229,null,"+",344,46255106,null,"COG2055","pfam02615","Malate/L-lactate dehydrogenase. This fam","COG2055","Malate/L-lactate dehydrogenases [Energy "]
["COG0524G, 2-keto-3-deoxy-gluconate kinase","TT_P0036",32222,33151,null,"+",309,46255107,null,"COG0524","cd01166","2-keto-3-deoxygluconate kinase (KdgK) ph","COG0524","Sugar kinases, ribokinase family [Carboh"]
[{"$nulls":4},"#",55978251,"Thermus_thermophilus_HB8","/am/ftp-genomes/Bacteria/Thermus_thermophilus_HB8/NC_006462.ptt"]
["COG2138S,COG3411C, cobalamin biosynthesis protein CbiX","TTHB058",50367,51470,null,"+",367,55978241,null,"COG2138","cd03414,cd02980,cd03414","Sirohydrochlorin cobalt chelatase (CbiX) ; Thioredoxin (TRX)-like [2Fe-2S] Ferredox ; Sirohydrochlorin cobalt chelatase (CbiX)","COG2138,COG3411","Sirohydrochlorin ferrochelatase [Inorgan ; Ferredoxin [Energy production and conver"]
["hypothetical protein","TTHB059",51471,51833,null,"+",120,55978242,null,null,"pfam04916,pfam08602","Phospholipase B. Phospholipase B (PLB) c ; Mgr1-like, i-AAA protease complex subuni"]
["COG0007H, S-adenosyl-L-methionine uroporphyrinogen methyltransferase","TTHB060",51830,52537,null,"+",235,55978243,null,"COG0007","pfam00590","Tetrapyrrole (Corrin/Porphyrin) Methylas","COG0007","Uroporphyrinogen-III methylase [Coenzyme"]
["COG0778C, cobalamin biosynthesis nitroreductase BluB","TTHB061",52503,53150,null,"+",215,55978244,null,"COG0778","cd02145","Subfamily of the nitroreductase family t","COG0778","Nitroreductase [Energy production and co"]
["COG1270H, cobalamin biosynthesis protein CbiB","TTHB062",53147,53995,null,"+",282,55978245,null,"COG1270","pfam03186","CobD/Cbib protein. This family includes ","COG1270","Cobalamin biosynthesis protein CobD/CbiB"]
["COG2250S, hypothetical protein","TTHB063",54005,54436,null,"+",143,55978246,null,"COG2250","pfam05168","HEPN domain. ","COG2250","Uncharacterized conserved protein relate"]
["COG1708R, hypothetical protein","TTHB064",54363,54692,null,"+",109,55978247,null,"COG1708","pfam01909","Nucleotidyltransferase domain. Members o","COG1669","Predicted nucleotidyltransferases [Gener"]
["COG0079E, cobalamin biosynthesis aminotransferase","TTHB065",54729,55736,null,"+",335,55978248,null,"COG0079","cd00609","Aspartate aminotransferase family. This ","COG0079","Histidinol-phosphate/aromatic aminotrans"]
["COG1492H,COG2087H, cobyric acid synthase/cobinamide kinase","TTHB066",55950,57839,null,"+",629,55978249,null,"COG1492","cd00544,cd01750,pfam01656","Adenosylcobinamide kinase / adenosylcobi ; Type 1 glutamine amidotransferase (GATas ; CobQ/CobB/MinD/ParA nucleotide binding d","COG1492,COG2087","Cobyric acid synthase [Coenzyme metaboli ; Adenosyl cobinamide kinase/adenosyl cobi"]
["COG1785P, alkaline phosphatase","TTHB067",57836,59341,null,"-",501,55978250,null,"COG1785","cd00016,cd00016","Alkaline phosphatase homologues; alkalin ; Alkaline phosphatase homologues; alkalin","COG1785","Alkaline phosphatase [Inorganic ion tran"]
["COG0052J,COG1431J, hypothetical protein","TTHB068",59516,61573,null,"-",685,55978251,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["COG0215J, hypothetical protein","TTHB069",61751,62152,null,"+",133,55978252,null,"COG1553","pfam02635","DsrE/DsrF-like family. DsrE is a small s","COG1553","Uncharacterized conserved protein involv"]
["COG0496R, survival protein SurE","TTHB070",62228,62962,null,"-",244,55978253,null,"COG0496","pfam01975","Survival protein SurE. Escherichia coli ","COG0496","Predicted acid phosphatase [General func"]
["COG1082G, hypothetical protein","TTHB071",62972,63736,null,"-",254,55978254,null,"COG1082","cd00019","AP endonuclease family 2; These endonucl","COG0648","Endonuclease IV [DNA replication, recomb"]
["COG0800G, 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase","TTHB072",64037,64660,null,"+",207,55978255,null,"COG0800","pfam01081","KDPG and KHG aldolase. This family inclu","COG0800","2-keto-3-deoxy-6-phosphogluconate aldola"]
["COG1414K, transcriptional regulator","TTHB073",64638,65414,null,"-",258,55978256,null,"COG1414","pfam01614,pfam09339","Bacterial transcriptional regulator. Thi ; IclR helix-turn-helix domain. ","COG1414","Transcriptional regulator [Transcription"]
["COG1638G, putative C4-dicarboxylate transporter, periplasmic C4-dicarboxylate-binding protein","TTHB074",65492,66451,null,"+",319,55978257,null,"COG1638","pfam03480","Bacterial extracellular solute-binding p","COG1638","TRAP-type C4-dicarboxylate transport sys"]
["COG3090G, putative C4-dicarboxylate transporter, small permease protein","TTHB075",66493,66954,null,"+",153,55978258,null,"COG3090","pfam04290","Tripartite ATP-independent periplasmic t","COG3090","TRAP-type C4-dicarboxylate transport sys"]
["COG1593G, putative C4-dicarboxylate transporter, large permease protein","TTHB076",66957,68240,null,"+",427,55978259,null,"COG1593","pfam06808","DctM-like transporters. This family cont","COG1593","TRAP-type C4-dicarboxylate transport sys"]
["COG1028IQR, short chain dehydrogenase/reductase family oxidoreductase","TTHB077",68237,68941,null,"+",234,55978260,null,"COG1028","pfam00106","short chain dehydrogenase. This family c","COG1028","Dehydrogenases with different specificit"]
["COG2055C, malate/L-lactate dehydrogenase family protein","TTHB078",68938,69972,null,"+",344,55978261,null,"COG2055","pfam02615","Malate/L-lactate dehydrogenase. This fam","COG2055","Malate/L-lactate dehydrogenases [Energy "]
[{"$nulls":4},"#",154244391,"Xanthobacter_autotrophicus_Py2","/am/ftp-genomes/Bacteria/Xanthobacter_autotrophicus_Py2/NC_009720.ptt"]
["COG0477GEPR, major facilitator transporter","Xaut_0424",456169,457380,null,"-",403,154244381,null,null,"pfam07690","Major Facilitator Superfamily. ","COG2814","Arabinose efflux permease [Carbohydrate "]
["COG1020Q, amino acid adenylation domain-containing protein","Xaut_0425",457377,461594,null,"-",1405,154244382,null,"COG1020","pfam00501,pfam00668,pfam00668,pfam00550,pfam09970","AMP-binding enzyme. ","COG1020,COG1020,COG4908","Non-ribosomal peptide synthetase modules ; Non-ribosomal peptide synthetase modules ; Uncharacterized protein containing a NRP"]
["COG3246S, hypothetical protein","Xaut_0426",461799,462764,null,"-",321,154244383,null,"COG3246","pfam05853","Prokaryotic protein of unknown function ","COG3246","Uncharacterized conserved protein [Funct"]
["COG1250I, 3-hydroxyacyl-CoA dehydrogenase","Xaut_0427",462874,463821,null,"-",315,154244384,null,"COG1250","pfam02737,pfam00725","3-hydroxyacyl-CoA dehydrogenase, NAD bin ; 3-hydroxyacyl-CoA dehydrogenase, C-termi","COG1250","3-hydroxyacyl-CoA dehydrogenase [Lipid m"]
["COG0411E, ABC transporter related","Xaut_0428",464078,466669,null,"-",863,154244385,null,"COG4177","cd06581,cd03224,cd03224","Transmembrane subunit (TM) of Escherichi ; LivF (TM1139) is part of the LIV-I bacte ; LivF (TM1139) is part of the LIV-I bacte","COG1129,COG4177","ABC-type sugar transport system, ATPase  ; ABC-type branched-chain amino acid trans"]
["COG0559E, inner-membrane translocator","Xaut_0429",466677,467558,null,"-",293,154244386,null,"COG0559","cd06582","Transmembrane subunit (TM) of Escherichi","COG0559","Branched-chain amino acid ABC-type trans"]
["COG0683E, extracellular ligand-binding receptor","Xaut_0430",467671,469008,null,"-",445,154244387,null,"COG0683","cd06327","Periplasmic solute-binding domain of act","COG0683","ABC-type branched-chain amino acid trans"]
["COG1802K, GntR family transcriptional regulator","Xaut_0431",469078,469827,null,"+",249,154244388,null,"COG1802","pfam07729,pfam00392","FCD domain. This domain is the C-termina ; Bacterial regulatory proteins, gntR fami","COG1802","Transcriptional regulators [Transcriptio"]
["COG1028IQR, short-chain dehydrogenase/reductase SDR","Xaut_0432",469875,470651,null,"+",258,154244389,null,"COG4221","pfam00106","short chain dehydrogenase. This family c","COG1028","Dehydrogenases with different specificit"]
["hypothetical protein","Xaut_0433",471114,472448,null,"+",444,154244390,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["hypothetical protein","Xaut_0434",472445,473893,null,"+",482,154244391,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG0287","Prephenate dehydrogenase [Amino acid tra"]
["COG0556L,COG1061KL, type III restriction protein res subunit","Xaut_0435",474143,477076,null,"-",977,154244392,null,"COG4096","pfam04851,cd03461","Type III restriction enzyme, res subunit ; Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ","COG1061,COG4096","DNA or RNA helicases of superfamily II [ ; Type I site-specific restriction-modific"]
["COG2189L, DNA methylase N-4/N-6 domain-containing protein","Xaut_0436",477076,479166,null,"-",696,154244393,null,"COG2189","pfam01555,pfam01555","DNA methylase. Members of this family ar ; DNA methylase. Members of this family ar","COG2189","Adenine specific DNA methylase Mod [DNA "]
["prevent-host-death family protein","Xaut_0437",479189,479374,null,"-",61,154244394,null,null,"pfam02604","Phd_YefM. ","COG2161","Antitoxin of toxin-antitoxin stability s"]
["hypothetical protein","Xaut_0438",479819,480607,null,"+",262,154244395]
["COG2253S, hypothetical protein","Xaut_0439",480613,481530,null,"+",305,154244396,null,null,"pfam08843,pfam09899","Domain of unknown function (DUF1814). Th ; Uncharacterized protein conserved in bac","COG2253","Uncharacterized conserved protein [Funct"]
["conjugal transfer TraD family protein","Xaut_0440",481555,481791,null,"-",78,154244397,null,null,"pfam06412","Conjugal transfer protein TraD. This fam"]
["putative conjugal transfert protein, TraC","Xaut_0441",481793,482119,null,"-",108,154244398,null,null,"pfam06412","Conjugal transfer protein TraD. This fam"]
["COG0507L, conjugal transfer relaxase TraA","Xaut_0442",482291,485248,null,"+",985,154244399,null,"COG0507","pfam03389,pfam01443,pfam01443,pfam08886","MobA/MobL family. This family includes o ; Viral (Superfamily 1) RNA helicase. Heli ; Viral (Superfamily 1) RNA helicase. Heli ; Glutamate-cysteine ligase. This is a rar","COG0507","ATP-dependent exoDNAse (exonuclease V), "]
["COG3311K, phage transcriptional regulator, AlpA","Xaut_0443",485378,485578,null,"+",66,154244400,null,"COG3311","pfam05930","Prophage CP4-57 regulatory protein (AlpA","COG3311","Predicted transcriptional regulator [Tra"]
["COG0582L, integrase family protein","Xaut_0444",485602,486987,null,"-",461,154244401,null,"COG0582","cd00801","Bacteriophage P4 integrase. P4-like inte","COG0582","Integrase [DNA replication, recombinatio"]
[{"$nulls":4},"#",188992493,"Xanthomonas_campestris_B100","/am/ftp-genomes/Bacteria/Xanthomonas_campestris_B100/NC_010688.ptt"]
["type III secretion system host membrane insertion protein","xccb100_3088",3521424,3524189,null,"-",921,188992483,null,null,"pfam05819","NolX protein. This family consists of Rh"]
["COG2085R, putative F420-dependent NADP reductase","xccb100_3089",3525199,3525933,null,"-",244,188992484,null,"COG2085","pfam03807","NADP oxidoreductase coenzyme F420-depend","COG2085","Predicted dinucleotide-binding enzymes ["]
["COG1309K, transcriptional regulator, TetR family","xccb100_3090",3526083,3526709,null,"+",208,188992485,null,"COG1309","pfam00440","Bacterial regulatory proteins, tetR fami","COG1309","Transcriptional regulator [Transcription"]
["COG0436E, putative aspartate transaminase","xccb100_3091",3526792,3527916,null,"-",374,188992486,null,"COG0436","cd00609","Aspartate aminotransferase family. This ","COG0436","Aspartate/tyrosine/aromatic aminotransfe"]
["COG1028IQR, short-chain dehydrogenase","xccb100_3092",3527928,3528719,null,"-",263,188992487,null,null,"pfam00106","short chain dehydrogenase. This family c","COG1028","Dehydrogenases with different specificit"]
["COG0520E, isopenicillin-N epimerase","xccb100_3093",3528716,3529963,null,"-",415,188992488,null,"COG0520","pfam00266","Aminotransferase class-V. This domain is","COG0520","Selenocysteine lyase/Cysteine desulfuras"]
["hypothetical protein","xccb100_3094",3529999,3530808,null,"-",269,188992489,{"$nulls":4},"COG0644","Dehydrogenases (flavoproteins) [Energy p"]
["COG1249C,COG2081R, hypothetical protein","xccb100_3095",3530818,3531603,null,"-",261,188992490,null,"COG0654","pfam01266","FAD dependent oxidoreductase. This famil","COG0644","Dehydrogenases (flavoproteins) [Energy p"]
["COG0346E, hypothetical protein","xccb100_3096",3532771,3533301,null,"-",176,188992491,null,"COG0346","pfam00903","Glyoxalase/Bleomycin resistance protein/","COG0346","Lactoylglutathione lyase and related lya"]
["putative Sir2-family regulator","xccb100_3097",3534535,3536508,null,"+",657,188992492,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd01406","Sir2-like: Prokaryotic group of uncharac","COG3696,COG0846","Putative silver efflux pump [Inorganic i ; NAD-dependent protein deacetylases, SIR2"]
["putative regulatory protein","xccb100_3098",3536508,3537956,null,"+",482,188992493,"PIWI domain containing protein","COG1431","cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein","xccb100_3099",3538015,3538110,null,"+",31,188992494]
["hypothetical protein","xccb100_3100",3538182,3538541,null,"+",119,188992495]
["MobA/MobL family protein","xccb100_3101",3538586,3540178,null,"-",530,188992496,null,null,"pfam03389,pfam08638,pfam06637","MobA/MobL family. This family includes o ; Mediator complex subunit MED14. Saccharo ; PV-1 protein (PLVAP). This family consis","COG0507","ATP-dependent exoDNAse (exonuclease V), "]
["hypothetical protein","xccb100_3102",3540437,3540763,null,"+",108,188992497,null,null,"pfam09831","Uncharacterized protein conserved in bac"]
["COG1403V, hypothetical protein","xccb100_3103",3540948,3541298,null,"+",116,188992498,null,null,"pfam01844","HNH endonuclease. ","COG1429","Cobalamin biosynthesis protein CobN and "]
["hypothetical protein","xccb100_3104",3541292,3541852,null,"+",186,188992499,null,null,"pfam03923,cd00778","Uncharacterized lipoprotein. The functio ; Prolyl-tRNA synthetase (ProRS) class II ","COG3017,COG0442","Outer membrane lipoprotein involved in o ; Prolyl-tRNA synthetase [Translation, rib"]
["COG3440V, hypothetical protein","xccb100_3105",3541894,3543135,null,"+",413,188992500,null,"COG3440",null,null,"COG3440","Predicted restriction endonuclease [Defe"]
["putative membrane-anchored protein conserved in xanthomonads","xccb100_3106",3543147,3543797,null,"-",216,188992501,null,null,"pfam01601","Coronavirus S2 glycoprotein. The coronav"]
["hypothetical protein","xccb100_3107",3543838,3547833,null,"-",1331,188992502,null,"COG5624","pfam05262,pfam07172,pfam04636","Borrelia P83/100 protein. This family co ; Glycine rich protein family. This family ; PA26 p53-induced protein (sestrin). PA26","COG3264,COG4907","Small-conductance mechanosensitive chann ; Predicted membrane protein [Function unk"]
["hypothetical protein","xccb100_3108",3547871,3548518,null,"-",215,188992503,null,null,"pfam07791,pfam10019","Protein of unknown function (DUF1629). T ; Uncharacterized conserved protein (DUF22"]
[]
[null,17216,{"$nulls":3},167754324,"Bacteria,Bacteroidetes/Chlorobi group,Bacteroidetes,Bacteroidia,Bacteroidales,Rikenellaceae,Alistipes,Alistipes putredinis,Alistipes putredinis DSM 17216",null,null,"DSM"]
["hypothetical protein ALIPUT_02607","ALIPUT_02607",2367339,2371214,null,"+",1291,167754314,null,null,"pfam10145,pfam02029,pfam04391","Phage-related minor tail protein. Member ; Caldesmon. ","COG5283","Phage-related tail protein [Function unk"]
["hypothetical protein ALIPUT_02608","ALIPUT_02608",2371234,2372226,null,"+",330,167754315,null,null,"pfam09742","Dyggve-Melchior-Clausen syndrome protein"]
["hypothetical protein ALIPUT_02609","ALIPUT_02609",2372217,2373569,null,"+",450,167754316,null,null,"pfam05954","Phage late control gene D protein (GPD)."]
["hypothetical protein ALIPUT_02610","ALIPUT_02610",2373578,2374897,null,"-",439,167754317,null,null,"pfam02350","UDP-N-acetylglucosamine 2-epimerase. Thi"]
["hypothetical protein ALIPUT_02611","ALIPUT_02611",2374985,2375878,null,"+",297,167754318,{"$nulls":4},"COG0566","rRNA methylases [Translation, ribosomal "]
["hypothetical protein ALIPUT_02612","ALIPUT_02612",2375875,2377557,null,"+",560,167754319,null,null,"pfam03243","Alkylmercury lyase. Alkylmercury lyase ("]
["hypothetical protein ALIPUT_02613","ALIPUT_02613",2377566,2379821,null,"+",751,167754320]
["hypothetical protein ALIPUT_02614","ALIPUT_02614",2379896,2383618,null,"+",1240,167754321,null,null,"pfam06519,pfam07902,pfam03142","TolA protein. This family consists of se ; gp58-like protein. Sequences found in th ; Chitin synthase. Members of this family ","COG3064","Membrane protein involved in colicin upt"]
["hypothetical protein ALIPUT_02615","ALIPUT_02615",2383656,2383988,null,"+",110,167754322]
["hypothetical protein ALIPUT_02616","ALIPUT_02616",2384012,2384326,null,"+",104,167754323]
["hypothetical protein ALIPUT_02617","ALIPUT_02617",2384399,2386231,null,"-",610,167754324,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3950","Predicted ATP-binding protein involved i"]
["hypothetical protein ALIPUT_02618","ALIPUT_02618",2386523,2387020,null,"-",165,167754325,{"$nulls":4},"COG3417","Collagen-binding surface adhesin SpaP (a"]
["hypothetical protein ALIPUT_02619","ALIPUT_02619",2387034,2387891,null,"-",285,167754326,null,null,"pfam04471","Restriction endonuclease. Prokaryotic fa","COG4127","Uncharacterized conserved protein [Funct"]
["hypothetical protein ALIPUT_02620","ALIPUT_02620",2388182,2388670,null,"-",162,167754327]
["hypothetical protein ALIPUT_02621","ALIPUT_02621",2388667,2389125,null,"-",152,167754328]
["hypothetical protein ALIPUT_02622","ALIPUT_02622",2389122,2389394,null,"-",90,167754329]
["hypothetical protein ALIPUT_02623","ALIPUT_02623",2389407,2390081,null,"-",224,167754330,null,null,"cd06330","Periplasmic solute-binding domain of act"]
["hypothetical protein ALIPUT_02624","ALIPUT_02624",2390150,2393116,null,"-",988,167754331,null,null,"cd00717","Uroporphyrinogen decarboxylase (URO-D) i"]
["hypothetical protein ALIPUT_02625","ALIPUT_02625",2393126,2393542,null,"-",138,167754332]
["hypothetical protein ALIPUT_02626","ALIPUT_02626",2393508,2394713,null,"-",401,167754333,null,null,"cd01651,pfam03159","RT_G2_intron: Reverse transcriptases (RT ; XRN 5'-3' exonuclease N-terminus. This f","COG3344","Retron-type reverse transcriptase [DNA r"]
["hypothetical protein ALIPUT_02627","ALIPUT_02627",2394827,2395174,null,"-",115,167754334,null,null,"pfam05427","Acidic fibroblast growth factor binding "]
[]
[{"$nulls":5},223934405,"Bacteria,Chlamydiae/Verrucomicrobia group,Verrucomicrobia,Verrucomicrobiae,Verrucomicrobiales,Verrucomicrobia subdivision 3,bacterium Ellin514"]
["catalytic domain of component of various dehydrogenase complexes ","Cflav_PD5933",142464,143699,null,"+",411,223934395,null,null,"pfam00198,pfam00364,pfam02817","2-oxoacid dehydrogenases acyltransferase ; Biotin-requiring enzyme. This family cov ; e3 binding domain. This family represent","COG0508","Pyruvate/2-oxoglutarate dehydrogenase co"]
["dihydrolipoamide dehydrogenase ","Cflav_PD5934",143705,145084,null,"+",459,223934396,null,null,"pfam07992,pfam02852","Pyridine nucleotide-disulphide oxidoredu ; Pyridine nucleotide-disulphide oxidoredu","COG1249","Pyruvate/2-oxoglutarate dehydrogenase co"]
["protein of unknown function UPF0261 ","Cflav_PD5935",145151,146377,null,"-",408,223934397,null,null,"pfam06792","Uncharacterised protein family (UPF0261)","COG5441","Uncharacterized conserved protein [Funct"]
["hypothetical protein Cflav_PD5936 ","Cflav_PD5936",146501,148864,null,"-",787,223934398]
["hypothetical protein Cflav_PD5937 ","Cflav_PD5937",149241,149528,null,"+",95,223934399,null,null,"pfam08407","Chitin synthase N-terminal. This is the "]
["hypothetical protein Cflav_PD5938 ","Cflav_PD5938",149685,150053,null,"+",122,223934400,{"$nulls":4},"COG4262","Predicted spermidine synthase with an N-"]
["integrase domain protein SAM domain protein ","Cflav_PD5939",150395,151642,null,"+",415,223934401,null,null,"cd01182,pfam02899","DNA breaking-rejoining enzymes, intergra ; Phage integrase, N-terminal SAM-like dom","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein Cflav_PD5940 ","Cflav_PD5940",151655,151819,null,"+",54,223934402]
["hypothetical protein Cflav_PD5941 ","Cflav_PD5941",152250,152888,null,"+",212,223934403,{"$nulls":4},"COG0771","UDP-N-acetylmuramoylalanine-D-glutamate "]
["conserved hypothetical protein ","Cflav_PD5942",153342,154760,null,"+",472,223934404,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["conserved hypothetical protein ","Cflav_PD5943",154757,156202,null,"+",481,223934405,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein Cflav_PD5944 ","Cflav_PD5944",156261,156779,null,"-",172,223934406]
["hypothetical protein Cflav_PD5945 ","Cflav_PD5945",156878,157456,null,"-",192,223934407,null,null,"pfam01661","Macro domain. This domain is an ADP-ribo"]
["hypothetical protein Cflav_PD5946 ","Cflav_PD5946",157466,157627,null,"-",53,223934408]
["hypothetical protein Cflav_PD5947 ","Cflav_PD5947",157624,158481,null,"-",285,223934409,{"$nulls":4},"COG4499","Predicted membrane protein [Function unk"]
["hypothetical protein Cflav_PD5948 ","Cflav_PD5948",158705,158977,null,"-",90,223934410]
["hypothetical protein Cflav_PD5949 ","Cflav_PD5949",158974,159654,null,"-",226,223934411,{"$nulls":4},"COG1454","Alcohol dehydrogenase, class IV [Energy "]
["hypothetical protein Cflav_PD5950 ","Cflav_PD5950",159651,160544,null,"-",297,223934412,null,null,"cd00020,cd02648","Armadillo/beta-catenin-like repeats. An  ; NH_1: A subgroup of nucleoside hydrolase","COG1413,COG0585","FOG: HEAT repeat [Energy production and  ; Uncharacterized conserved protein [Funct"]
["YD repeat-containing protein ","Cflav_PD5951",160925,166489,null,"+",1854,223934413,null,null,"pfam05593,pfam05593,pfam05593,pfam05593,pfam05593,pfam05593,pfam05593,pfam05593","RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende ; RHS Repeat. RHS proteins contain extende","COG3209,COG4946","Rhs family protein [Cell envelope biogen ; Uncharacterized protein related to the p"]
["hypothetical protein Cflav_PD5952 ","Cflav_PD5952",166495,166950,null,"+",151,223934414,null,null,"pfam00006","ATP synthase alpha/beta family, nucleoti"]
["hypothetical protein Cflav_PD5953 ","Cflav_PD5953",167059,167550,null,"+",163,223934415]
[]
[]
[{"$nulls":5},224023924,"Bacteria,Bacteroidetes/Chlorobi group,Bacteroidetes,Bacteroidia,Bacteroidales,Bacteroidaceae,Bacteroides,Bacteroides coprophilus,Bacteroides coprophilus DSM 18228"]
["hypothetical protein BACCOPRO_00631 ","BACCOPRO_00631",630201,630350,null,"+",49,224023914,null,null,"pfam08083","PROCN (NUC071) domain. The PROCN domain "]
["hypothetical protein BACCOPRO_00632 ","BACCOPRO_00632",631289,632098,null,"-",269,224023915,null,null,"cd00144","Protein phosphatase 2A homologues, catal","COG3074,COG1407","Uncharacterized protein conserved in bac ; Predicted ICC-like phosphoesterases [Gen"]
["hypothetical protein BACCOPRO_00633 ","BACCOPRO_00633",632091,632966,null,"-",291,224023916,null,null,"pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
["hypothetical protein BACCOPRO_00635 ","BACCOPRO_00635",632963,633490,null,"-",175,224023918,null,null,"pfam04556","DpmII restriction endonuclease. Members ","COG5340","Predicted transcriptional regulator [Tra"]
["hypothetical protein BACCOPRO_00634 ","BACCOPRO_00634",633489,633674,null,"+",61,224023917]
["hypothetical protein BACCOPRO_00636 ","BACCOPRO_00636",633837,634157,null,"+",106,224023919,null,null,"cd00093","Helix-turn-helix XRE-family like protein","COG1426","Predicted transcriptional regulator cont"]
["hypothetical protein BACCOPRO_00637 ","BACCOPRO_00637",634189,635259,null,"+",356,224023920,null,null,"cd00085","HNH nucleases; HNH endonuclease signatur","COG3513","Predicted CRISPR-associated nuclease, co"]
["hypothetical protein BACCOPRO_00638 ","BACCOPRO_00638",635271,635516,null,"+",81,224023921]
["hypothetical protein BACCOPRO_00639 ","BACCOPRO_00639",635497,636393,null,"+",298,224023922,null,null,"cd01275,pfam08242","FHIT (fragile histidine family): FHIT pr ; Methyltransferase domain. Members of thi","COG0537,COG2227","Diadenosine tetraphosphate (Ap4A) hydrol ; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy"]
["hypothetical protein BACCOPRO_00640 ","BACCOPRO_00640",636456,637859,null,"+",467,224023923,"TIR domain fused to APAZ domain",null,"pfam01582,CHL00117","TIR domain. The Toll/interleukin-1 recep ; RNA polymerase beta&apos;&apos; subunit;"]
["hypothetical protein BACCOPRO_00641 ","BACCOPRO_00641",637849,639345,null,"+",498,224023924,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein BACCOPRO_00642 ","BACCOPRO_00642",639472,639798,null,"-",108,224023925]
["hypothetical protein BACCOPRO_00643 ","BACCOPRO_00643",639882,640119,null,"-",78,224023926,null,null,"pfam06548,pfam10322","Kinesin-related. This family represents  ; Serpentine type 7TM GPCR chemoreceptor S"]
["hypothetical protein BACCOPRO_00644 ","BACCOPRO_00644",640374,641444,null,"-",356,224023927,null,null,"cd02042,cd02042","ParA and ParB of Caulobacter crescentus  ; ParA and ParB of Caulobacter crescentus ","COG1192,COG0191","ATPases involved in chromosome partition ; Fructose/tagatose bisphosphate aldolase "]
["hypothetical protein BACCOPRO_00645 ","BACCOPRO_00645",641597,642196,null,"-",199,224023928,null,null,"pfam01349","Flavivirus non-structural protein NS4B. "]
["hypothetical protein BACCOPRO_00646 ","BACCOPRO_00646",642230,644044,null,"-",604,224023929,null,null,"pfam09854,pfam03235","Uncharacterized conserved protein (DUF20 ; Protein of unknown function DUF262. ","COG3472,COG1479","Uncharacterized conserved protein [Funct ; Uncharacterized conserved protein [Funct"]
["hypothetical protein BACCOPRO_00647 ","BACCOPRO_00647",644054,644671,null,"-",205,224023930,null,null,"pfam03961","Protein of unknown function (DUF342). Th","COG1656,COG3105","Uncharacterized conserved protein [Funct ; Uncharacterized protein conserved in bac"]
["hypothetical protein BACCOPRO_00648 ","BACCOPRO_00648",644677,646263,null,"-",528,224023931,null,null,"pfam01580","FtsK/SpoIIIE family. FtsK has extensive ","COG0433","HerA helicase [Replication, recombinatio"]
["hypothetical protein BACCOPRO_00649 ","BACCOPRO_00649",646269,648269,null,"-",666,224023932,null,null,"cd03279,pfam02463","SbcCD and other Mre11/Rad50 (MR) complex ; RecF/RecN/SMC N terminal domain. This do","COG0419","ATPase involved in DNA repair [DNA repli"]
["hypothetical protein BACCOPRO_00650 ","BACCOPRO_00650",648278,648496,null,"-",72,224023933,null,null,"cd03680","Coenzyme B12-dependent-methylmalonyl coe","COG5422","RhoGEF, Guanine nucleotide exchange fact"]
["hypothetical protein BACCOPRO_00651 ","BACCOPRO_00651",648502,650847,null,"-",781,224023934,null,null,"pfam04851","Type III restriction enzyme, res subunit","COG1061","DNA or RNA helicases of superfamily II ["]
[]
[{"$nulls":5},218130589,"Bacteria,Bacteroidetes/Chlorobi group,Bacteroidetes,Bacteroidia,Bacteroidales,Bacteroidaceae,Bacteroides,Bacteroides eggerthii,Bacteroides eggerthii DSM 20697"]
["hypothetical protein BACEGG_02168 ","BACEGG_02168",2363378,2363818,null,"-",146,218130579,{"$nulls":4},"COG0823","Periplasmic component of the Tol biopoly"]
["hypothetical protein BACEGG_02169 ","BACEGG_02169",2363837,2364397,null,"-",186,218130580]
["hypothetical protein BACEGG_02170 ","BACEGG_02170",2364432,2364626,null,"+",64,218130581,null,null,"pfam00056","lactate/malate dehydrogenase, NAD bindin"]
["hypothetical protein BACEGG_02171 ","BACEGG_02171",2364602,2364775,null,"-",57,218130582]
["hypothetical protein BACEGG_02172 ","BACEGG_02172",2364833,2365159,null,"+",108,218130583,null,null,"pfam08646","Replication factor-A C terminal domain. "]
["hypothetical protein BACEGG_02173 ","BACEGG_02173",2365171,2365491,null,"+",106,218130584,null,null,"cd01106","Helix-turn-helix (HTH) TipAL, Mta, and S"]
["hypothetical protein BACEGG_02174 ","BACEGG_02174",2365629,2367017,null,"-",462,218130585,null,null,"PHA00368","internal virion protein D"]
["hypothetical protein BACEGG_02175 ","BACEGG_02175",2367211,2367342,null,"+",43,218130586]
["hypothetical protein BACEGG_02176 ","BACEGG_02176",2367398,2367625,null,"-",75,218130587,null,null,"pfam04185","Phosphoesterase family. This family incl"]
["hypothetical protein BACEGG_02177 ","BACEGG_02177",2368125,2369411,null,"+",428,218130588,null,null,"cd00009","The AAA+ (ATPases Associated with a wide","COG1373","Predicted ATPase (AAA+ superfamily) [Gen"]
["hypothetical protein BACEGG_02178 ","BACEGG_02178",2369456,2372572,null,"+",1038,218130589,"PIWI domain containing protein fused to Sir2 nuclease and APAZ domain",null,"cd04659,cd00296","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","COG1431,COG1274","Argonaute homolog, implicated in RNA met ; Phosphoenolpyruvate carboxykinase (GTP) "]
["hypothetical protein BACEGG_02179 ","BACEGG_02179",2372622,2372741,null,"+",39,218130590]
["hypothetical protein BACEGG_02180 ","BACEGG_02180",2372741,2372890,null,"+",49,218130591,{"$nulls":4},"COG4700","Uncharacterized protein conserved in bac"]
["hypothetical protein BACEGG_02181 ","BACEGG_02181",2372954,2374165,null,"-",403,218130592,null,null,"cd01185","Tn4399 and related integrases, DNA break","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein BACEGG_02182 ","BACEGG_02182",2374187,2375416,null,"-",409,218130593,null,null,"cd01185","Tn4399 and related integrases, DNA break","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein BACEGG_02183 ","BACEGG_02183",2375615,2375881,null,"+",88,218130594,null,null,"cd01185","Tn4399 and related integrases, DNA break","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein BACEGG_02184 ","BACEGG_02184",2376196,2376549,null,"+",117,218130595,{"$nulls":4},"COG3311","Predicted transcriptional regulator [Tra"]
["hypothetical protein BACEGG_02185 ","BACEGG_02185",2376546,2377145,null,"+",199,218130596,null,null,"pfam08800","VirE N-terminal domain. This presumed do"]
["hypothetical protein BACEGG_02186 ","BACEGG_02186",2377093,2378901,null,"+",602,218130597,null,null,"pfam08707","Primase C terminal 2 (PriCT-2). This alp","COG3173","Predicted aminoglycoside phosphotransfer"]
["hypothetical protein BACEGG_02187 ","BACEGG_02187",2379003,2379371,null,"+",122,218130598,null,null,"pfam05713","Bacterial mobilisation protein (MobC). T"]
["hypothetical protein BACEGG_02188 ","BACEGG_02188",2379355,2380254,null,"+",299,218130599,null,null,"pfam03432","Relaxase/Mobilisation nuclease domain. R"]
[]
[{"$nulls":5},171321418,"Bacteria,Proteobacteria,Betaproteobacteria,Burkholderiales,Burkholderiaceae,Burkholderia,Burkholderia cepacia complex,Burkholderia ambifaria,Burkholderia ambifaria MEX-5"]
["peptidase S1 and S6 chymotrypsin/Hap ","BamMEX5DRAFT_5712",6278943,6280385,null,"+",480,171321407,null,null,"cd00987,cd00987,pfam00089","PDZ domain of tryspin-like serine protea ; PDZ domain of tryspin-like serine protea ; Trypsin. ","COG0265,COG0265","Trypsin-like serine proteases, typically ; Trypsin-like serine proteases, typically"]
["hypothetical protein BamMEX5DRAFT_5713 ","BamMEX5DRAFT_5713",6280425,6280544,null,"-",39,171321408]
["fumarylacetoacetate (FAA) hydrolase ","BamMEX5DRAFT_5714",6280639,6281337,null,"-",232,171321409,null,null,"pfam01557","Fumarylacetoacetate (FAA) hydrolase fami","COG0179","2-keto-4-pentenoate hydratase/2-oxohepta"]
["transcriptional regulator, AraC family ","BamMEX5DRAFT_5715",6281467,6282408,null,"-",313,171321410,null,null,"smart00342","helix_turn_helix, arabinose operon contr","COG4753","Response regulator containing CheY-like "]
["protein of unknown function UPF0153 ","BamMEX5DRAFT_5716",6282533,6283327,null,"-",264,171321411,null,null,"pfam03692,pfam09338","Uncharacterised protein family (UPF0153) ; Glycine/sarcosine/betaine reductase comp","COG0727,COG0309","Predicted Fe-S-cluster oxidoreductase [G ; Hydrogenase maturation factor [Posttrans"]
["Uracil-DNA glycosylase superfamily ","BamMEX5DRAFT_5717",6283360,6283959,null,"-",199,171321412,null,null,"pfam03167","Uracil DNA glycosylase superfamily. ","COG1573","Uracil-DNA glycosylase [DNA replication,"]
["ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein ","BamMEX5DRAFT_5718",6284106,6284207,null,"-",33,171321413]
["histone family protein nucleoid-structuring protein H-NS ","BamMEX5DRAFT_5719",6284268,6284990,null,"-",240,171321415,null,null,"pfam00816,pfam00816","H-NS histone family. ","COG2916,COG2916,COG5373","DNA-binding protein H-NS [General functi ; DNA-binding protein H-NS [General functi ; Predicted membrane protein [Function unk"]
["hypothetical protein BamMEX5DRAFT_5720 ","BamMEX5DRAFT_5720",6285210,6286073,null,"-",287,171321416]
["hypothetical protein BamMEX5DRAFT_5721 ","BamMEX5DRAFT_5721",6286192,6286308,null,"+",38,171321417]
["conserved hypothetical protein ","BamMEX5DRAFT_5722",6286835,6289981,null,"+",1048,171321418,"PIWI domain containing protein fused to Sir2 nuclease and APAZ domain",null,"cd04659,cd00296,cd00223","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si ; TOPRIM_TopoIIB_SPO: topoisomerase-primas","COG1431,COG0846,COG2929","Argonaute homolog, implicated in RNA met ; NAD-dependent protein deacetylases, SIR2 ; Uncharacterized protein conserved in bac"]
["ISRSO10-transposase orfB protein ","BamMEX5DRAFT_5723",6290007,6290186,null,"-",59,171321419,null,null,"pfam00665","Integrase core domain. Integrase mediate"]
["hypothetical protein BamMEX5DRAFT_5724 ","BamMEX5DRAFT_5724",6290750,6291304,null,"+",184,171321420]
["alpha/beta hydrolase fold ","BamMEX5DRAFT_5725",6291182,6292018,null,"-",278,171321421,null,null,"pfam00561","alpha/beta hydrolase fold. This catalyti","COG0596","Predicted hydrolases or acyltransferases"]
["metal dependent phosphohydrolase ","BamMEX5DRAFT_5726",6292269,6292910,null,"-",213,171321422,null,null,"smart00471,cd03817","Metal dependent phosphohydrolases with c ; This family is most closely related to t","COG2844","UTP:GlnB (protein PII) uridylyltransfera"]
["Catalase ","BamMEX5DRAFT_5727",6292950,6293456,null,"-",168,171321423,null,null,"cd00328","Catalase. Catalase is an ubiquitous enzy","COG0753","Catalase [Inorganic ion transport and me"]
["conserved hypothetical protein ","BamMEX5DRAFT_5728",6293729,6297925,null,"+",1398,171321425,null,null,"pfam08328,pfam05170","Adenylosuccinate lyase C-terminal. This  ; AsmA family. The AsmA gene, whose produc","COG3164","Predicted membrane protein [Function unk"]
["Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase ","BamMEX5DRAFT_5729",6297977,6298804,null,"+",275,171321426,null,null,"pfam00795","Carbon-nitrogen hydrolase. This family c","COG0388","Predicted amidohydrolase [General functi"]
["peptidase U62 modulator of DNA gyrase ","BamMEX5DRAFT_5730",6298897,6300363,null,"+",488,171321427,null,null,"pfam01523","Putative modulator of DNA gyrase. tldD a","COG0312","Predicted Zn-dependent proteases and the"]
["phospho-2-dehydro-3-deoxyheptonate aldolase ","BamMEX5DRAFT_5731",6300812,6301885,null,"+",357,171321428,null,null,"pfam00793","DAHP synthetase I family. Members of thi","COG0722","3-deoxy-D-arabino-heptulosonate 7-phosph"]
["prevent-host-death family protein ","BamMEX5DRAFT_5732",6302009,6302278,null,"+",89,171321429,null,null,"pfam02604","Phd_YefM. ","COG4118","Antitoxin of toxin-antitoxin stability s"]
[]
[{"$nulls":5},170696578,"Bacteria,Proteobacteria,Betaproteobacteria,Burkholderiales,Burkholderiaceae,Burkholderia,Burkholderia graminis,Burkholderia graminis C4D1M"]
["transcriptional regulator, AraC family ","BgramDRAFT_6500",7191989,7193014,null,"-",341,170696568,null,null,"cd03137,smart00342","A subgroup of AraC transcriptional regul ; helix_turn_helix, arabinose operon contr","COG4977","Transcriptional regulator containing an "]
["hypothetical protein BgramDRAFT_6501 ","BgramDRAFT_6501",7193341,7193448,null,"+",35,170696569]
["putative inner membrane protein ","BgramDRAFT_6502",7193464,7194171,null,"-",235,170696570,null,null,"pfam09678","Cytochrome c oxidase caa3 assembly facto","COG3336","Predicted membrane protein [Function unk"]
["hypothetical protein BgramDRAFT_6503 ","BgramDRAFT_6503",7194899,7195852,null,"-",317,170696571,null,null,"pfam02463","RecF/RecN/SMC N terminal domain. This do","COG4942","Membrane-bound metallopeptidase [Cell di"]
["integrase family protein ","BgramDRAFT_6504",7196021,7197190,null,"+",389,170696572,null,null,"cd01183,pfam05108","INT_SG1, DNA breaking-rejoining enzymes, ; Protein of unknown function (DUF690). Th","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein BgramDRAFT_6505 ","BgramDRAFT_6505",7197510,7197911,null,"+",133,170696573,null,null,"pfam07614","Protein of unknown function (DUF1577). A"]
["hypothetical protein BgramDRAFT_6506 ","BgramDRAFT_6506",7198754,7203889,null,"+",1711,170696574,null,null,"pfam01637,pfam05478","Archaeal ATPase. This family contain a c ; Prominin. The prominins are an emerging ","COG1474","Cdc6-related protein, AAA superfamily AT"]
["Integrase catalytic region ","BgramDRAFT_6507",7203985,7205502,null,"+",505,170696575,null,null,"pfam00665,pfam08279","Integrase core domain. Integrase mediate ; HTH domain. This family includes helix-t","COG4584","Transposase and inactivated derivatives "]
["IstB domain protein ATP-binding protein ","BgramDRAFT_6508",7205492,7206268,null,"+",258,170696576,null,null,"pfam01695","IstB-like ATP binding protein. This prot","COG1484","DNA replication protein [DNA replication"]
["hypothetical protein BgramDRAFT_6509 ","BgramDRAFT_6509",7206305,7207597,null,"+",430,170696577,null,null,"pfam02463,pfam09369","RecF/RecN/SMC N terminal domain. This do ; Domain of unknown function (DUF1998). Th","COG0552","Signal recognition particle GTPase [Intr"]
["conserved hypothetical protein ","BgramDRAFT_6510",7207915,7211007,null,"-",1030,170696578,"PIWI domain containing protein fused to Sir2 nuclease and APAZ domain",null,"cd04659,cd01406","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Sir2-like: Prokaryotic group of uncharac","COG5511,COG0846","Bacteriophage capsid protein [General fu ; NAD-dependent protein deacetylases, SIR2"]
["PAS/PAC sensor signal transduction histidine kinase ","BgramDRAFT_6511",7212002,7213564,null,"+",520,170696580,"PAS/PAC sensor signal transduction histidine kinase ",null,"pfam02518,pfam08447,cd00082","Histidine kinase-, DNA gyrase B-, and HS ; PAS fold. The PAS fold corresponds to th ; Histidine Kinase A (dimerization/phospho","COG4191,COG2202","Signal transduction histidine kinase reg ; FOG: PAS/PAC domain [Signal transduction"]
["thiamine pyrophosphate protein TPP binding domain protein ","BgramDRAFT_6512",7214294,7214614,null,"+",106,170696581,null,null,"pfam02776","Thiamine pyrophosphate enzyme, N-termina","COG0028","Thiamine pyrophosphate-requiring enzymes"]
["thiamine pyrophosphate protein domain protein TPP-binding ","BgramDRAFT_6513",7214580,7216016,null,"+",478,170696582,null,null,"cd02014,pfam00205,pfam02776","Thiamine pyrophosphate (TPP) family, Pyr ; Thiamine pyrophosphate enzyme, central d ; Thiamine pyrophosphate enzyme, N-termina","COG0028","Thiamine pyrophosphate-requiring enzymes"]
["Auxin Efflux Carrier ","BgramDRAFT_6514",7216077,7217021,null,"-",314,170696583,null,null,"pfam03547","Membrane transport protein. This family ","COG0679","Predicted permeases [General function pr"]
["Glutathione S-transferase domain ","BgramDRAFT_6515",7217251,7217883,null,"+",210,170696584,null,null,"cd03195,cd00570","GST_C family, unknown subfamily 4; compo ; Glutathione S-transferase (GST) family, ","COG0625","Glutathione S-transferase [Posttranslati"]
["conserved hypothetical protein ","BgramDRAFT_6516",7218064,7218366,null,"-",100,170696585,null,null,"pfam06155","Protein of unknown function (DUF971). Th","COG3536","Uncharacterized protein conserved in bac"]
["PBS lyase HEAT domain protein repeat-containing protein ","BgramDRAFT_6517",7218363,7219367,null,"-",334,170696586,null,null,"pfam01602","Adaptin N terminal region. This family c","COG1413","FOG: HEAT repeat [Energy production and "]
["4Fe-4S ferredoxin iron-sulfur binding domain protein ","BgramDRAFT_6518",7219407,7219682,null,"-",91,170696587,null,null,"CHL00014","NADH dehydrogenase subunit I","COG1146","Ferredoxin [Energy production and conver"]
["fumarate reductase/succinate dehydrogenase flavoprotein domain protein ","BgramDRAFT_6519",7219695,7221434,null,"-",579,170696588,null,null,"pfam00890,pfam02910","FAD binding domain. This family includes ; Fumarate reductase/succinate dehydrogena","COG1053","Succinate dehydrogenase/fumarate reducta"]
["transcriptional regulator, GntR family ","BgramDRAFT_6520",7221431,7222252,null,"-",273,170696589,null,null,"pfam07702,pfam00392","UTRA domain. The UbiC transcription regu ; Bacterial regulatory proteins, gntR fami","COG2188","Transcriptional regulators [Transcriptio"]
[]
[{"$nulls":5},209515879,"Bacteria,Proteobacteria,Betaproteobacteria,Burkholderiales,Burkholderiaceae,Burkholderia,Burkholderia sp. H160"]
["RepB plasmid partition ","BH160DRAFT_1008",1082510,1083412,null,"+",300,209515869,null,null,"pfam07506,pfam02195","RepB plasmid partitioning protein. This  ; ParB-like nuclease domain. ","COG1475","Stage 0 sporulation protein J (antagonis"]
["hypothetical protein BH160DRAFT_1009 ","BH160DRAFT_1009",1083578,1084402,null,"-",274,209515870,null,null,"pfam02516","Oligosaccharyl transferase STT3 subunit."]
["hypothetical protein BH160DRAFT_1010 ","BH160DRAFT_1010",1084688,1084879,null,"+",63,209515871]
["restriction endonuclease ","BH160DRAFT_1011",1084910,1085821,null,"+",303,209515872,null,null,"pfam04471,pfam05510","Restriction endonuclease. Prokaryotic fa ; Sarcoglycan alpha/epsilon. Sarcoglycans ","COG1715","Restriction endonuclease [Defense mechan"]
["conserved hypothetical protein ","BH160DRAFT_1012",1086045,1087265,null,"-",406,209515873,null,null,"pfam00784,pfam04615","MyTH4 domain. Domain in myosin and kines ; Utp14 protein. This protein is found to ","COG3886","Predicted HKD family nuclease [DNA repli"]
["conserved hypothetical protein ","BH160DRAFT_1013",1087610,1090933,null,"+",1107,209515874]
["DEAD/DEAH box helicase domain protein ","BH160DRAFT_1014",1090942,1097193,null,"+",2083,209515875,null,null,"pfam00270,cd00079,pfam09369","DEAD/DEAH box helicase. Members of this  ; Helicase superfamily c-terminal domain;  ; Domain of unknown function (DUF1998). Th","COG1205,COG1205,COG1205","Distinct helicase family with a unique C ; Distinct helicase family with a unique C ; Distinct helicase family with a unique C"]
["conserved hypothetical protein ","BH160DRAFT_1015",1097514,1097672,null,"+",52,209515876,null,null,"pfam07506","RepB plasmid partitioning protein. This "]
["hypothetical protein BH160DRAFT_1016 ","BH160DRAFT_1016",1097851,1099176,null,"-",441,209515877]
["protein of unknown function DUF262 ","BH160DRAFT_1017",1099780,1101558,null,"+",592,209515878,"protein of unknown function DUF262 ",null,"pfam09854,pfam03235","Uncharacterized conserved protein (DUF20 ; Protein of unknown function DUF262. ","COG3472,COG1479","Uncharacterized conserved protein [Funct ; Uncharacterized conserved protein [Funct"]
["conserved hypothetical protein ","BH160DRAFT_1018",1101919,1104927,null,"+",1002,209515879,"PIWI domain containing protein fused to Sir2 nuclease and APAZ domain",null,"cd04659,cd00296","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","COG0846","NAD-dependent protein deacetylases, SIR2"]
["hypothetical protein BH160DRAFT_1019 ","BH160DRAFT_1019",1104994,1106862,null,"-",622,209515880,null,null,"cd05599","STKc_NDR_like: Serine/Threonine Kinases "]
["hypothetical protein BH160DRAFT_1020 ","BH160DRAFT_1020",1106859,1107848,null,"-",329,209515881,null,null,"pfam05621","Bacterial TniB protein. This family cons","COG1474","Cdc6-related protein, AAA superfamily AT"]
["hypothetical protein BH160DRAFT_1021 ","BH160DRAFT_1021",1107845,1109881,null,"-",678,209515882,null,null,"pfam00665,pfam09299","Integrase core domain. Integrase mediate ; Mu transposase, C-terminal. Members of t"]
["conserved hypothetical protein ","BH160DRAFT_1022",1109878,1110651,null,"-",257,209515883,null,null,"pfam03720","UDP-glucose/GDP-mannose dehydrogenase fa"]
["conserved hypothetical protein ","BH160DRAFT_1023",1111077,1111589,null,"+",170,209515884,null,null,"pfam01654","Bacterial Cytochrome Ubiquinol Oxidase. "]
["conserved hypothetical protein ","BH160DRAFT_1024",1112062,1112271,null,"+",69,209515885]
["metallophosphoesterase ","BH160DRAFT_1025",1113064,1113849,null,"+",261,209515886,null,null,"pfam00149,pfam00149","Calcineurin-like phosphoesterase. This f ; Calcineurin-like phosphoesterase. This f","COG1409","Predicted phosphohydrolases [General fun"]
["hypothetical protein BH160DRAFT_1026 ","BH160DRAFT_1026",1113876,1114970,null,"+",364,209515887]
["conserved hypothetical protein ","BH160DRAFT_1027",1115020,1115313,null,"+",97,209515888,null,null,"pfam05277","Protein of unknown function (DUF726). Th"]
["hypothetical protein BH160DRAFT_1028 ","BH160DRAFT_1028",1115389,1115922,null,"+",177,209515889]
[]
[]
[]
[{"$nulls":5},229219623,"Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacteriales,Enterobacteriaceae,Citrobacter,Citrobacter youngae,Citrobacter youngae ATCC 29220"]
["hypothetical protein CIT292_02149 ","CIT292_02149",2107028,2107699,null,"-",223,229219619,{"$nulls":4},"COG0664","cAMP-binding proteins - catabolite gene "]
["hypothetical protein CIT292_02150 ","CIT292_02150",2107765,2108208,null,"-",147,227332653,{"$nulls":4},"COG0664","cAMP-binding proteins - catabolite gene "]
["hypothetical protein CIT292_02151 ","CIT292_02151",2108911,2109450,null,"+",179,227332654,null,null,"pfam00419","Fimbrial protein. ","COG3539","P pilus assembly protein, pilin FimA [Ce"]
["hypothetical protein CIT292_02152 ","CIT292_02152",2109577,2110248,null,"+",223,229219620,null,null,"pfam00345,pfam02753","Gram-negative pili assembly chaperone, N ; Gram-negative pili assembly chaperone, C","COG3121","P pilus assembly protein, chaperone PapD"]
["hypothetical protein CIT292_02153 ","CIT292_02153",2110274,2112952,null,"+",892,229219621,null,null,"pfam00577","Fimbrial Usher protein. This protein is ","COG3188","P pilus assembly protein, porin PapC [Ce"]
["hypothetical protein CIT292_02154 ","CIT292_02154",2112968,2114314,null,"+",448,227332657,null,null,"pfam00419","Fimbrial protein. ","COG3539","P pilus assembly protein, pilin FimA [Ce"]
["hypothetical protein CIT292_02155 ","CIT292_02155",2114314,2115039,null,"+",241,227332658,null,null,"pfam00345,pfam02753","Gram-negative pili assembly chaperone, N ; Gram-negative pili assembly chaperone, C","COG3121","P pilus assembly protein, chaperone PapD"]
["hypothetical protein CIT292_02156 ","CIT292_02156",2115194,2115802,null,"+",202,227332659,null,null,"pfam00196","Bacterial regulatory proteins, luxR fami","COG2197","Response regulator containing a CheY-lik"]
["hypothetical protein CIT292_02157 ","CIT292_02157",2115926,2120512,null,"-",1528,229219622,null,null,"pfam02369,pfam02369,pfam02369,pfam02369,pfam02369,pfam02369,pfam02369,pfam02369,pfam02369,pfam02369","Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This ; Bacterial Ig-like domain (group 1). This","COG4932","Predicted outer membrane protein [Cell e"]
["hypothetical protein CIT292_02158 ","CIT292_02158",2121352,2122773,null,"+",473,227332661,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["hypothetical protein CIT292_02159 ","CIT292_02159",2123060,2124154,null,"+",364,229219623,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein CIT292_02160 ","CIT292_02160",2124591,2125067,null,"-",158,227332663,null,null,"pfam05827","Vacuolar ATP synthase subunit S1 (ATP6S1"]
["hypothetical protein CIT292_02161 ","CIT292_02161",2125649,2125870,null,"-",73,227332664]
["hypothetical protein CIT292_02162 ","CIT292_02162",2125879,2126238,null,"-",119,227332665,null,null,"pfam09892","Uncharacterized protein conserved in arc"]
["hypothetical protein CIT292_02163 ","CIT292_02163",2126401,2127267,null,"-",288,227332666,null,null,"cd00798","XerD and XerC integrases, DNA breaking-r","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein CIT292_02164 ","CIT292_02164",2127255,2127431,null,"-",58,229219624]
["hypothetical protein CIT292_02165 ","CIT292_02165",2127604,2127783,null,"+",59,227332667]
["hypothetical protein CIT292_02166 ","CIT292_02166",2127787,2127918,null,"+",43,229219625]
["hypothetical protein CIT292_02167 ","CIT292_02167",2128080,2128283,null,"-",67,227332668]
["hypothetical protein CIT292_02168 ","CIT292_02168",2128296,2128973,null,"-",225,227332669]
["hypothetical protein CIT292_02169 ","CIT292_02169",2129389,2129817,null,"+",142,229219626,null,null,"cd01362","Class II fumarases.  This group contains","COG1600","Uncharacterized Fe-S protein [Energy pro"]
[]
[{"$nulls":5},164686207,"Bacteria,Firmicutes,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium bartlettii,Clostridium bartlettii DSM 16795"]
["hypothetical protein CLOBAR_02635 ","CLOBAR_02635",2737361,2738281,null,"-",306,164686197,null,null,"cd01164","1-phosphofructokinase (FruK), minor 6-ph","COG1105","Fructose-1-phosphate kinase and related "]
["hypothetical protein CLOBAR_02636 ","CLOBAR_02636",2738512,2739954,null,"-",480,164686198,null,null,"cd00211,cd05568,pfam00874,pfam05043","PTS_IIA, PTS system, fructose/mannitol s ; PTS_IIB_bgl_like: the PTS (phosphotransf ; PRD domain. The PRD domain (for PTS Regu ; Mga helix-turn-helix domain. M regulator","COG3711,COG1762","Transcriptional antiterminator [Transcri ; Phosphotransferase system mannitol/fruct"]
["hypothetical protein CLOBAR_02637 ","CLOBAR_02637",2740334,2742448,null,"-",704,164686199,null,null,"cd00186,cd03362,smart00661","DNA Topoisomerase, subtype IA; DNA-bindi ; TOPRIM_TopoIA_TopoIII: The topoisomerase ; RNA polymerase subunit 9; ","COG0550,COG0551","Topoisomerase IA [DNA replication, recom ; Zn-finger domain associated with topoiso"]
["hypothetical protein CLOBAR_02638 ","CLOBAR_02638",2742634,2743212,null,"-",192,164686200,null,null,"cd04692","Members of the Nudix hydrolase superfami","COG1443","Isopentenyldiphosphate isomerase [Lipid "]
["hypothetical protein CLOBAR_02639 ","CLOBAR_02639",2743244,2743792,null,"-",182,164686201,null,null,"cd02908","Macro domain, Appr-1\"-pase_like family. ","COG2110","Predicted phosphatase homologous to the "]
["hypothetical protein CLOBAR_02640 ","CLOBAR_02640",2743824,2743952,null,"-",42,164686202]
["hypothetical protein CLOBAR_02641 ","CLOBAR_02641",2744044,2744841,null,"-",265,164686203,null,null,"pfam01226","Formate/nitrite transporter. ","COG2116","Formate/nitrite family of transporters ["]
["hypothetical protein CLOBAR_02642 ","CLOBAR_02642",2745137,2746363,null,"-",408,164686204,null,null,"pfam00171","Aldehyde dehydrogenase family. This fami","COG0014","Gamma-glutamyl phosphate reductase [Amin"]
["hypothetical protein CLOBAR_02643 ","CLOBAR_02643",2746397,2747206,null,"-",269,164686205,null,null,"cd04242","AAK_G5K_ProB: Glutamate-5-kinase (G5K) c","COG0263","Glutamate 5-kinase [Amino acid transport"]
["hypothetical protein CLOBAR_02644 ","CLOBAR_02644",2747410,2747772,null,"+",120,164686206,null,null,"cd00814","This is the catalytic core domain of met"]
["hypothetical protein CLOBAR_02645 ","CLOBAR_02645",2747837,2750047,null,"-",736,164686207,"PIWI domain containing protein",null,"cd04659,cd01677","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; PFL2_DhaB_BssA  This CD includes pyruvat","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein CLOBAR_02646 ","CLOBAR_02646",2750757,2752127,null,"+",456,164686208,null,null,"pfam01235","Sodium:alanine symporter family. ","COG1115","Na+/alanine symporter [Amino acid transp"]
["hypothetical protein CLOBAR_02647 ","CLOBAR_02647",2752333,2754468,null,"-",711,164686209,null,null,"cd00082,pfam02518,pfam02714,pfam00672,pfam09433","Histidine Kinase A (dimerization/phospho ; Histidine kinase-, DNA gyrase B-, and HS ; Domain of unknown function DUF221. This  ; HAMP domain. ","COG0642,COG2211","Signal transduction histidine kinase [Si ; Na+/melibiose symporter and related tran"]
["hypothetical protein CLOBAR_02648 ","CLOBAR_02648",2754479,2755174,null,"-",231,164686210,null,null,"CHL00148","Ycf27; Reviewed","COG0745","Response regulators consisting of a CheY"]
["hypothetical protein CLOBAR_02649 ","CLOBAR_02649",2755388,2755867,null,"-",159,164686211,null,null,"pfam03366,pfam10479","YEATS family. We have named this family  ; Fragile site-associated protein C-termin","COG5518","Bacteriophage capsid portal protein [Gen"]
["hypothetical protein CLOBAR_02650 ","CLOBAR_02650",2756043,2756360,null,"-",105,164686212,null,null,"pfam00085","Thioredoxin. Thioredoxins are small enzy","COG3118","Thioredoxin domain-containing protein [P"]
["hypothetical protein CLOBAR_02651 ","CLOBAR_02651",2756377,2757336,null,"-",319,164686213,null,null,"pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG0492","Thioredoxin reductase [Posttranslational"]
["hypothetical protein CLOBAR_02652 ","CLOBAR_02652",2757326,2759143,null,"-",605,164686214,null,null,"cd06459","Peptidase family M3B Oligopeptidase F (P","COG1164","Oligoendopeptidase F [Amino acid transpo"]
["hypothetical protein CLOBAR_02653 ","CLOBAR_02653",2759121,2760377,null,"-",418,164686215,null,null,"pfam07885","Ion channel. This family includes the tw","COG1357,COG1226","Pentapeptide repeats containing protein  ; Kef-type K+ transport systems, predicted"]
["hypothetical protein CLOBAR_02654 ","CLOBAR_02654",2760691,2761140,null,"+",149,164686216,{"$nulls":4},"COG0162","Tyrosyl-tRNA synthetase [Translation, ri"]
["hypothetical protein CLOBAR_02655 ","CLOBAR_02655",2761191,2761505,null,"+",104,164686217,null,null,"pfam07561","Domain of Unknown Function (DUF1540). Th"]
[]
[]
[{"$nulls":5},196245474,"Bacteria,Cyanobacteria,Chroococcales,Cyanothece,Cyanothece sp. PCC 8802"]
["conserved hypothetical protein ","Cyan8802DRAFT_2584",2681343,2682095,null,"+",250,196245463,null,null,"pfam08817","YukD. YukD is a bacterial protein that a"]
["glycosyl transferase family 2 ","Cyan8802DRAFT_2585",2682135,2683313,null,"+",392,196245464,null,null,"pfam00535,cd00189,pfam00515,cd00189","Glycosyl transferase family 2. Diverse f ; Tetratricopeptide repeat domain; typical ; Tetratricopeptide repeat. ","COG0463,COG5010","Glycosyltransferases involved in cell wa ; Flp pilus assembly protein TadD, contain"]
["ribosomal protein L7/L12 ","Cyan8802DRAFT_2586",2683465,2683863,null,"-",132,196245465,null,null,"CHL00083","ribosomal protein L12","COG0222","Ribosomal protein L7/L12 [Translation, r"]
["ribosomal protein L10 ","Cyan8802DRAFT_2587",2683936,2684505,null,"-",189,196245466,null,null,"cd05797","Ribosomal protein L10 family, L10 subfam","COG0244","Ribosomal protein L10 [Translation, ribo"]
["ribosomal protein L1 ","Cyan8802DRAFT_2588",2684749,2685465,null,"-",238,196245467,null,null,"CHL00129","ribosomal protein L1; Reviewed","COG0081","Ribosomal protein L1 [Translation, ribos"]
["ribosomal protein L11 ","Cyan8802DRAFT_2589",2685519,2685944,null,"-",141,196245468,null,null,"CHL00127","ribosomal protein L11; Validated","COG0080","Ribosomal protein L11 [Translation, ribo"]
["NusG antitermination factor ","Cyan8802DRAFT_2590",2685948,2686574,null,"-",208,196245469,null,null,"pfam02357,pfam00467","Transcription termination factor nusG. ","COG0250","Transcription antiterminator [Transcript"]
["preprotein translocase, SecE subunit ","Cyan8802DRAFT_2591",2686574,2686810,null,"-",78,196245470,null,null,"pfam00584","SecE/Sec61-gamma subunits of protein tra","COG0690","Preprotein translocase subunit SecE [Int"]
["ribosomal protein L19 ","Cyan8802DRAFT_2592",2687073,2687435,null,"-",120,196245471,null,null,"CHL00084","ribosomal protein L19","COG0335","Ribosomal protein L19 [Translation, ribo"]
["hypothetical protein Cyan8802DRAFT_2593 ","Cyan8802DRAFT_2593",2687693,2687821,null,"-",42,196245472]
["stem cell self-renewal protein Piwi domain protein ","Cyan8802DRAFT_2594",2688184,2690100,null,"+",638,196245474,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["photosystem I reaction centre subunit IX / PsaJ ","Cyan8802DRAFT_2595",2690229,2690357,null,"-",42,196245475,null,null,"pfam01701","Photosystem I reaction centre subunit IX"]
["photosystem I reaction center protein PsaF subunit III ","Cyan8802DRAFT_2596",2690458,2690955,null,"-",165,196245476,null,null,"pfam02507","Photosystem I reaction centre subunit II","COG4851","Protein involved in sex pheromone biosyn"]
["metalloendopeptidase, glycoprotease family ","Cyan8802DRAFT_2597",2691106,2692152,null,"+",348,196245477,null,null,"pfam00814","Glycoprotease family. The Peptidase M22 ","COG0533","Metal-dependent proteases with possible "]
["conserved hypothetical protein ","Cyan8802DRAFT_2598",2692508,2693542,null,"+",344,196245478,null,null,"pfam10017,cd00187","Uncharacterized conserved protein (DUF22 ; DNA Topoisomerase, subtype IIA; domain A","COG4301","Uncharacterized conserved protein [Funct"]
["conserved hypothetical protein ","Cyan8802DRAFT_2599",2693630,2693881,null,"-",83,196245479,null,null,"cd01675","RNR, class III. Ribonucleotide reductase","COG1328","Oxygen-sensitive ribonucleoside-triphosp"]
["transcriptional regulator, LysR family ","Cyan8802DRAFT_2600",2694216,2695145,null,"+",309,196245480,null,null,"pfam03466,pfam00126","LysR substrate binding domain. The struc ; Bacterial regulatory helix-turn-helix pr","COG0583","Transcriptional regulator [Transcription"]
["FHA domain containing protein ","Cyan8802DRAFT_2601",2695203,2696891,null,"+",562,196245481,null,null,"pfam00498","FHA domain. The FHA (Forkhead-associated","COG1716,COG4995","FOG: FHA domain [Signal transduction mec ; Uncharacterized protein conserved in bac"]
["hypothetical protein Cyan8802DRAFT_2602 ","Cyan8802DRAFT_2602",2696955,2697449,null,"-",164,196245482,null,null,"pfam01401","Angiotensin-converting enzyme. Members o","COG0188","Type IIA topoisomerase (DNA gyrase/topo "]
["ABC transporter related ","Cyan8802DRAFT_2603",2697561,2698337,null,"-",258,196245483,null,null,"cd03219","The Mj1267/LivG ABC transporter subfamil","COG0411","ABC-type branched-chain amino acid trans"]
["conserved hypothetical protein ","Cyan8802DRAFT_2604",2698545,2699315,null,"+",256,196245484]
[]
[{"$nulls":5},229917852,"Bacteria,Firmicutes,Bacilli,Bacillales,Bacillales incertae sedis,Bacillales Family XII. Incertae Sedis,Exiguobacterium,Exiguobacterium sp. AT1b"]
["chaperonin Cpn10 ","EAT1b_2120",2069250,2069534,null,"+",94,229917842,null,null,"pfam00166","Chaperonin 10 Kd subunit. This family co","COG0234","Co-chaperonin GroES (HSP10) [Posttransla"]
["chaperonin GroEL ","EAT1b_2121",2069574,2071208,null,"+",544,229917843,null,null,"cd03344","GroEL_like type I chaperonin. Chaperonin","COG0459","Chaperonin GroEL (HSP60 family) [Posttra"]
["hypothetical protein EAT1b_2122 ","EAT1b_2122",2071422,2072708,null,"+",428,229917844,null,null,"pfam06054","Competence protein CoiA-like family. Man","COG4469,COG4796","Competence protein CoiA-like family, con ; Type II secretory pathway, component Hof"]
["hypothetical protein EAT1b_2123 ","EAT1b_2123",2072864,2073148,null,"-",94,229917845]
["HNH endonuclease ","EAT1b_2124",2073393,2074433,null,"+",346,229917846,null,null,"pfam01844,pfam03097","HNH endonuclease. ","COG3183","Predicted restriction endonuclease [Defe"]
["AAA ATPase ","EAT1b_2125",2074420,2076312,null,"+",630,229917847,null,null,"pfam09848,pfam04851","Uncharacterized conserved protein (DUF20 ; Type III restriction enzyme, res subunit","COG3410,COG0467","Uncharacterized conserved protein [Funct ; RecA-superfamily ATPases implicated in s"]
["hypothetical protein EAT1b_2126 ","EAT1b_2126",2076319,2076591,null,"-",90,229917848,null,null,"pfam03448","MgtE intracellular N domain. This domain"]
["hypothetical protein EAT1b_2127 ","EAT1b_2127",2077161,2077391,null,"+",76,229917849,null,null,"pfam09954","Uncharacterized protein conserved in bac"]
["hypothetical protein EAT1b_2128 ","EAT1b_2128",2077471,2078871,null,"+",466,229917850,null,null,"pfam02601,cd05016","Exonuclease VII, large subunit. This fam ; Phosphoglucose isomerase (PGI) contains ","COG5022","Myosin heavy chain [Cytoskeleton]"]
["hypothetical protein EAT1b_2129 ","EAT1b_2129",2078990,2079280,null,"+",96,229917851,"piwi - N-terminal fragment"]
["stem cell self-renewal protein Piwi domain protein ","EAT1b_2130",2079277,2081094,null,"+",605,229917852,"PIWI domain containing protein",null,"cd04659,pfam06074","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Protein of unknown function (DUF935). Th","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein EAT1b_2131 ","EAT1b_2131",2081197,2081619,null,"+",140,229917853,null,null,"pfam03060","2-nitropropane dioxygenase. Members of t","COG1577","Mevalonate kinase [Lipid metabolism]"]
["ABC-2 type transporter ","EAT1b_2132",2081697,2082404,null,"-",235,229917854,null,null,"pfam09847","Predicted permease (DUF2074). This domai","COG1668","ABC-type Na+ efflux pump, permease compo"]
["ABC transporter related ","EAT1b_2133",2082401,2083249,null,"-",282,229917855,null,null,"cd03230","This family of ATP-binding proteins belo","COG1131","ABC-type multidrug transport system, ATP"]
["response regulator receiver protein ","EAT1b_2134",2083380,2084360,null,"-",326,229917856,null,null,"pfam04397,cd03266","LytTr DNA-binding domain. This domain is ; NatA is the ATPase component of a bacter","COG3279,COG4555","Response regulator of the LytR/AlgR fami ; ABC-type Na+ transport system, ATPase co"]
["MazG nucleotide pyrophosphohydrolase ","EAT1b_2135",2084504,2084824,null,"+",106,229917857,null,null,"pfam03819","MazG nucleotide pyrophosphohydrolase dom","COG1694","Predicted pyrophosphatase [General funct"]
["hypothetical protein EAT1b_2136 ","EAT1b_2136",2084821,2085018,null,"+",65,229917858]
["hypothetical protein EAT1b_2137 ","EAT1b_2137",2085028,2085498,null,"+",156,229917859]
["isochorismatase hydrolase ","EAT1b_2138",2085665,2086246,null,"-",193,229917860,null,null,"cd01014","Nicotinamidase_ related amidohydrolases.","COG1335","Amidases related to nicotinamidase [Seco"]
["transcriptional regulator, AsnC family ","EAT1b_2139",2086392,2086814,null,"+",140,229917861,null,null,"smart00344","helix_turn_helix ASNC type; AsnC: an aut","COG1522","Transcriptional regulators [Transcriptio"]
["hypothetical protein EAT1b_2140 ","EAT1b_2140",2086901,2087545,null,"+",214,229917862,null,null,"cd01938","ADP-dependent glucokinase (ADPGK) and ph"]
[]
[]
[{"$nulls":5},168702707,"Bacteria,Planctomycetes,Planctomycetacia,Planctomycetales,Planctomycetaceae,Gemmata,Gemmata obscuriglobus,Gemmata obscuriglobus UQM 2246"]
["hypothetical protein GobsU_24431 ","GobsU_010100024431",5661375,5661650,null,"-",91,168702697,null,null,"pfam01267","F-actin capping protein alpha subunit. "]
["hypothetical protein GobsU_24436 ","GobsU_010100024436",5661921,5662424,null,"+",167,168702698,null,null,"pfam05461","Apolipoprotein L. Apo L belongs to the h","COG5464","Uncharacterized conserved protein [Funct"]
["putative transcriptional regulator ","GobsU_010100024441",5662421,5662675,null,"-",84,168702699,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG1396","Predicted transcriptional regulators [Tr"]
["hypothetical protein GobsU_24446 ","GobsU_010100024446",5662788,5662928,null,"+",46,168702700]
["2OG-Fe(II) oxygenase ","GobsU_010100024451",5663675,5664268,null,"+",197,168702701,null,null,"smart00702,cd00831","Prolyl 4-hydroxylase alpha subunit homol ; Chalcone and stilbene synthases; plant-s","COG3145","Alkylated DNA repair protein [DNA replic"]
["hypothetical protein GobsU_24456 ","GobsU_010100024456",5664360,5665133,null,"-",257,168702702,null,null,"pfam08843,pfam04440","Domain of unknown function (DUF1814). Th ; Dysbindin (Dystrobrevin binding protein "]
["hypothetical protein GobsU_24461 ","GobsU_010100024461",5665254,5665868,null,"-",204,168702703,null,null,"cd01146","Fe3+-siderophore binding domain FhuD.  T","COG5340","Predicted transcriptional regulator [Tra"]
["hypothetical protein GobsU_24466 ","GobsU_010100024466",5666000,5666230,null,"-",76,168702704,null,null,"pfam05540","Serpulina hyodysenteriae variable surfac","COG1570","Exonuclease VII, large subunit [DNA repl"]
["hypothetical protein GobsU_24471 ","GobsU_010100024471",5666642,5666710,null,"-",22,168702705]
["transposase IS4 family protein ","GobsU_010100024476",5667280,5668275,null,"-",331,168702706,null,null,"pfam01609","Transposase DDE domain. Transposase prot"]
["stem cell self-renewal protein Piwi domain protein ","GobsU_010100024481",5668436,5669992,null,"+",518,168702707,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1080","Phosphoenolpyruvate-protein kinase (PTS "]
["hypothetical protein GobsU_24486 ","GobsU_010100024486",5669989,5671308,null,"+",439,168702708,"Rec-like endonuclease fused to uncharacterized N-terminal domain",null,"pfam08357","SEFIR domain. This family comprises IL17"]
["hypothetical protein GobsU_24491 ","GobsU_010100024491",5671480,5672385,null,"-",301,168702709,null,null,"pfam00892,pfam00892","Integral membrane protein DUF6. This fam ; Integral membrane protein DUF6. This fam","COG0697","Permeases of the drug/metabolite transpo"]
["hypothetical protein GobsU_24496 ","GobsU_010100024496",5672480,5672977,null,"-",165,168702710,null,null,"pfam01930,cd06579","Domain of unknown function DUF83. This d ; Transmembrane subunit (TM) of Escherichi","COG1468","CRISPR-associated protein Cas4 (RecB fam"]
["hypothetical protein GobsU_24501 ","GobsU_010100024501",5672977,5673234,null,"-",85,168702711,null,null,"pfam00654","Voltage gated chloride channel. This fam"]
["nuclear receptor binding factor 1 ","GobsU_010100024506",5673634,5674596,null,"+",320,168702712,null,null,"pfam00107,pfam08240","Zinc-binding dehydrogenase. ","COG0604","NADPH:quinone reductase and related Zn-d"]
["hypothetical protein GobsU_24511 ","GobsU_010100024511",5674617,5675639,null,"-",340,168702713,null,null,"cd00799","Cre recombinase, C-terminal catalytic do","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein GobsU_24516 ","GobsU_010100024516",5675786,5676322,null,"-",178,168702714,null,null,"pfam07907","YibE/F-like protein. The sequences featu"]
["hypothetical protein GobsU_24521 ","GobsU_010100024521",5676367,5676495,null,"-",42,168702715]
["transposase, unclassified family protein ","GobsU_010100024526",5676496,5676695,null,"-",65,168702716]
["hypothetical protein GobsU_24531 ","GobsU_010100024531",5676711,5677076,null,"-",121,168702717]
[]
[]
[{"$nulls":5},227881908,"Archaea,Euryarchaeota,Halobacteria,Halobacteriales,Halobacteriaceae,Halogeometricum,Halogeometricum borinquense,Halogeometricum borinquense DSM 11551"]
["short chain enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase ","HborDRAFT_2553",2397555,2399534,null,"+",659,227881898,null,null,"pfam02737,cd06558,pfam00725,pfam00725","3-hydroxyacyl-CoA dehydrogenase, NAD bin ; Crotonase/Enoyl-Coenzyme A (CoA) hydrata ; 3-hydroxyacyl-CoA dehydrogenase, C-termi ; 3-hydroxyacyl-CoA dehydrogenase, C-termi","COG1250,COG1024,COG1250","3-hydroxyacyl-CoA dehydrogenase [Lipid m ; Enoyl-CoA hydratase/carnithine racemase  ; 3-hydroxyacyl-CoA dehydrogenase [Lipid m"]
["site-specific recombinase XerD ","HborDRAFT_2554",2399865,2400968,null,"+",367,227881899,null,null,"cd00798","XerD and XerC integrases, DNA breaking-r","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein HborDRAFT_2555 ","HborDRAFT_2555",2401067,2402185,null,"-",372,227881900,null,null,"cd01182,cd03265","DNA breaking-rejoining enzymes, intergra ; DrrA is the ATP-binding protein componen","COG4974,COG1131","Site-specific recombinase XerD [DNA repl ; ABC-type multidrug transport system, ATP"]
["hypothetical protein HborDRAFT_2556 ","HborDRAFT_2556",2402536,2402730,null,"+",64,227881901]
["hypothetical protein HborDRAFT_2557 ","HborDRAFT_2557",2402797,2404905,null,"-",702,227881902,null,null,"pfam02384","N-6 DNA Methylase. Restriction-modificat","COG0286","Type I restriction-modification system m"]
["hypothetical protein HborDRAFT_2558 ","HborDRAFT_2558",2405562,2405876,null,"-",104,227881903,null,null,"pfam07047","Optic atrophy 3 protein (OPA3). This fam","COG3919","Predicted ATP-grasp enzyme [General func"]
["ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing ","HborDRAFT_2559",2406160,2409618,null,"-",1152,227881904,null,null,"pfam00580,pfam00580","UvrD/REP helicase. The Rep family helica ; UvrD/REP helicase. The Rep family helica","COG1074","ATP-dependent exoDNAse (exonuclease V) b"]
["hypothetical protein HborDRAFT_2560 ","HborDRAFT_2560",2409615,2410520,null,"-",301,227881905,null,null,"pfam04737","Lantibiotic dehydratase, N terminus. Lan"]
["hypothetical protein HborDRAFT_2561 ","HborDRAFT_2561",2410517,2412577,null,"-",686,227881906,null,null,"pfam00580","UvrD/REP helicase. The Rep family helica","COG0210","Superfamily I DNA and RNA helicases [DNA"]
["hypothetical protein HborDRAFT_2562 ","HborDRAFT_2562",2412583,2414703,null,"-",706,227881907,null,null,"cd00138","Phospholipase D. Active site motifs; The","COG3886","Predicted HKD family nuclease [DNA repli"]
["uncharacterized protein containing piwi/argonaute domain ","HborDRAFT_2563",2414767,2417454,null,"-",895,227881908,"PIWI domain containing protein",null,"cd04659,pfam05110","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; AF-4 proto-oncoprotein. This family cons","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein HborDRAFT_2564 ","HborDRAFT_2564",2417713,2419389,null,"+",558,227881909,null,null,"smart00382","ATPases associated with a variety of cel","COG1373","Predicted ATPase (AAA+ superfamily) [Gen"]
["hypothetical protein HborDRAFT_2565 ","HborDRAFT_2565",2419485,2424509,null,"+",1674,227881910,null,null,"pfam02518,pfam07095,smart00611","Histidine kinase-, DNA gyrase B-, and HS ; Intracellular growth attenuator protein  ; Domain of unknown function in Sec63p, Br","COG4191","Signal transduction histidine kinase reg"]
["hypothetical protein HborDRAFT_2566 ","HborDRAFT_2566",2424592,2425824,null,"+",410,227881911]
["hypothetical protein HborDRAFT_2567 ","HborDRAFT_2567",2425830,2427176,null,"-",448,227881912,null,null,"pfam04471,pfam06050","Restriction endonuclease. Prokaryotic fa ; 2-hydroxyglutaryl-CoA dehydratase, D-com","COG4187","Arginine degradation protein (predicted "]
["hypothetical protein HborDRAFT_2568 ","HborDRAFT_2568",2427369,2428136,null,"+",255,227881913,null,null,"smart00486","DNA polymerase type-B family; DNA polyme","COG0417","DNA polymerase elongation subunit (famil"]
["hypothetical protein HborDRAFT_2569 ","HborDRAFT_2569",2428169,2431729,null,"-",1186,227881914,null,null,"pfam02463,pfam02463,pfam01040","RecF/RecN/SMC N terminal domain. This do ; RecF/RecN/SMC N terminal domain. This do ; UbiA prenyltransferase family. ","COG4717","Uncharacterized conserved protein [Funct"]
["DNA repair exonuclease ","HborDRAFT_2570",2431722,2433008,null,"-",428,227881915,null,null,"pfam00149","Calcineurin-like phosphoesterase. This f","COG0420","DNA repair exonuclease [DNA replication,"]
["hypothetical protein HborDRAFT_2571 ","HborDRAFT_2571",2433281,2434156,null,"-",291,227881916,null,null,"pfam00979,MTH00149","Reovirus outer capsid protein, Sigma 3.  ; NADH dehydrogenase subunit 4L; Provision","COG0555","ABC-type sulfate transport system, perme"]
["hypothetical protein HborDRAFT_2572 ","HborDRAFT_2572",2434221,2435174,null,"-",317,227881917,null,null,"pfam09114","Transcription factor MotA, activation do","COG3440,COG4742","Predicted restriction endonuclease [Defe ; Predicted transcriptional regulator [Tra"]
["hypothetical protein HborDRAFT_2573 ","HborDRAFT_2573",2435288,2435530,null,"-",80,227881918,{"$nulls":4},"COG2133","Glucose/sorbosone dehydrogenases [Carboh"]
[]
[{"$nulls":5},119493538,"Bacteria,Cyanobacteria,Oscillatoriales,Lyngbya,Lyngbya sp. PCC 8106"]
["hypothetical protein L8106_18172 ","L8106_18172",6426664,6428775,null,"-",703,119493528,null,null,"pfam04455,pfam02274","LOR/SDH bifunctional enzyme conserved re ; Amidinotransferase. This family contains","COG1915,COG1834","Uncharacterized conserved protein [Funct ; N-Dimethylarginine dimethylaminohydrolas"]
["hypothetical protein L8106_18177 ","L8106_18177",6429205,6430542,null,"+",445,119493529]
["two-component response regulator ","L8106_18182",6430749,6432539,null,"-",596,119493530,null,null,"cd01948,pfam00990,smart00448","EAL domain. This domain is found in dive ; GGDEF domain. This domain is found linke ; cheY-homologous receiver domain; CheY re","COG5001,COG3437","Predicted signal transduction protein co ; Response regulator containing a CheY-lik"]
["phosphoribosylaminoimidazole carboxylase ","L8106_18187",6432671,6433876,null,"-",401,119493531,null,null,"pfam02222,pfam00070","ATP-grasp domain. This family does not c ; Pyridine nucleotide-disulphide oxidoredu","COG0026","Phosphoribosylaminoimidazole carboxylase"]
["hypothetical protein L8106_18192 ","L8106_18192",6434065,6434643,null,"+",192,119493532,null,null,"pfam00805,pfam00805","Pentapeptide repeats (8 copies). These r ; Pentapeptide repeats (8 copies). These r","COG1357","Pentapeptide repeats containing protein "]
["hypothetical protein L8106_18197 ","L8106_18197",6434699,6435118,null,"+",139,119493533,null,null,"cd00474","The SUI1/eIF1 (eukaryotic initiation fac","COG0023","Translation initiation factor 1 (eIF-1/S"]
["hypothetical protein L8106_18202 ","L8106_18202",6435152,6435766,null,"+",204,119493534,null,null,"pfam04055","Radical SAM superfamily. Radical SAM pro","COG0602","Organic radical activating enzymes [Post"]
["hypothetical protein L8106_18207 ","L8106_18207",6435905,6436222,null,"+",105,119493535]
["hypothetical protein L8106_18212 ","L8106_18212",6436556,6436801,null,"+",81,119493536,null,null,"pfam02594","Uncharacterised ACR, YggU family COG1872","COG1872","Uncharacterized conserved protein [Funct"]
["hypothetical protein L8106_18217 ","L8106_18217",6436914,6437150,null,"+",78,119493537]
["hypothetical protein L8106_18222 ","L8106_18222",6437162,6439456,null,"-",764,119493538,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein L8106_18227 ","L8106_18227",6439453,6439705,null,"-",83,119493539,"RecB family nuclease, COG1468 subfamily, fragment",null,"pfam09421","Frequency clock protein. The frequency c","COG1468","CRISPR-associated protein Cas4 (RecB fam"]
["cell division protein; FtsH ","L8106_25857",6439706,6440948,null,"+",413,119493541,null,null,"CHL00176","cell division protein; Validated","COG0465","ATP-dependent Zn proteases [Posttranslat"]
["cell division protein; FtsH ","L8106_25862",6441010,6442857,null,"+",615,119493542,null,null,"CHL00176","cell division protein; Validated","COG0465","ATP-dependent Zn proteases [Posttranslat"]
["hypothetical protein L8106_25867 ","L8106_25867",6442980,6443915,null,"+",311,119493543,null,null,"pfam03747","ADP-ribosylglycohydrolase. This family i","COG1397","ADP-ribosylglycohydrolase [Posttranslati"]
["hypothetical protein L8106_25872 ","L8106_25872",6443968,6444225,null,"+",85,119493544,null,null,"pfam10763","Protein of unknown function (DUF2584). T"]
["hypothetical protein L8106_25877 ","L8106_25877",6444301,6444471,null,"-",56,119493545]
["hypothetical protein L8106_25882 ","L8106_25882",6444500,6445090,null,"+",196,119493546,null,null,"pfam01471,pfam01471","Putative peptidoglycan binding domain. T ; Putative peptidoglycan binding domain. T","COG3409","Putative peptidoglycan-binding domain-co"]
["hypothetical protein L8106_25887 ","L8106_25887",6445505,6446089,null,"+",194,119493547,null,null,"pfam01471,pfam01471","Putative peptidoglycan binding domain. T ; Putative peptidoglycan binding domain. T","COG3409","Putative peptidoglycan-binding domain-co"]
["hypothetical protein L8106_25892 ","L8106_25892",6446244,6446684,null,"-",146,119493548,null,null,"pfam00903","Glyoxalase/Bleomycin resistance protein/","COG0346","Lactoylglutathione lyase and related lya"]
["hypothetical protein L8106_25897 ","L8106_25897",6446744,6447250,null,"-",168,119493549,null,null,"pfam09654","Protein of unknown function (DUF2396). T"]
[]
[]
[{"$nulls":5},114777173,"Bacteria,Proteobacteria,Zetaproteobacteria,Mariprofundales,Mariprofundaceae,Mariprofundus,Mariprofundus ferrooxydans,Mariprofundus ferrooxydans PV-1"]
["hypothetical protein SPV1_08858 ","SPV1_08858",1261000,1261218,null,"-",72,114777163,null,null,"pfam01402","Ribbon-helix-helix protein, copG family."]
["hypothetical protein SPV1_08863 ","SPV1_08863",1261356,1262981,null,"-",541,114777164,null,null,"cd00338,pfam07508","Serine Recombinase family, catalytic dom ; Recombinase. This domain is usually foun","COG1961","Site-specific recombinases, DNA invertas"]
["multi-sensor hybrid histidine kinase ","SPV1_08868",1263015,1264895,null,"-",626,114777165,null,null,"pfam08447,pfam00989,pfam08447,pfam05231,pfam08448","PAS fold. The PAS fold corresponds to th ; PAS fold. The PAS fold corresponds to th ; PAS fold. The PAS fold corresponds to th ; MASE1. Predicted integral membrane senso ; PAS fold. The PAS fold corresponds to th","COG2202,COG2223","FOG: PAS/PAC domain [Signal transduction ; Nitrate/nitrite transporter [Inorganic i"]
["thioredoxin-disulfide reductase ","SPV1_08873",1265078,1266013,null,"-",311,114777166,null,null,"pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG0492","Thioredoxin reductase [Posttranslational"]
["glycosyl hydrolase, family 10 ","SPV1_08878",1266081,1266962,null,"-",293,114777167,null,null,"pfam00795,cd01745","Carbon-nitrogen hydrolase. This family c ; This group contains a subgroup of protei","COG0388","Predicted amidohydrolase [General functi"]
["peptidylarginine deiminase-related protein ","SPV1_08883",1266959,1268011,null,"-",350,114777168,null,null,"pfam04371","Porphyromonas-type peptidyl-arginine dei","COG2957","Peptidylarginine deiminase and related e"]
["magnesium transporter ","SPV1_08888",1268019,1269425,null,"-",468,114777169,null,null,"cd04606,pfam03448,pfam01769","This cd contains two tandem repeats of t ; MgtE intracellular N domain. This domain ; Divalent cation transporter. This region","COG2239","Mg/Co/Ni transporter MgtE (contains CBS "]
["two component, sigma54 specific, transcriptional regulator, Fis family protein ","SPV1_08893",1269534,1270220,null,"+",228,114777170,null,null,"pfam00072,pfam00512","Response regulator receiver domain. This ; His Kinase A (phosphoacceptor) domain. D","COG2204","Response regulator containing CheY-like "]
["transcription-repair coupling factor ","SPV1_08898",1270254,1273583,null,"+",1109,114777171,null,null,"pfam02559,pfam00270,cd00079,pfam03461","CarD-like/TRCF domain. CarD is a Myxococ ; DEAD/DEAH box helicase. Members of this  ; Helicase superfamily c-terminal domain;  ; TRCF domain. ","COG1197","Transcription-repair coupling factor (su"]
["phosphoserine phosphatase ","SPV1_08903",1273705,1274319,null,"+",204,114777172,null,null,"pfam00702","haloacid dehalogenase-like hydrolase. Th","COG0560","Phosphoserine phosphatase [Amino acid tr"]
["Piwi domain protein ","SPV1_08908",1274519,1277173,null,"-",884,114777173,"PIWI domain containing protein",null,"cd04659,pfam01094","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Receptor family ligand binding region. T"]
["hypothetical protein SPV1_08913 ","SPV1_08913",1277814,1278605,null,"-",263,114777174,null,null,"pfam04305","Protein of unknown function (DUF455). ","COG2833","Uncharacterized protein conserved in bac"]
["hypothetical protein SPV1_08918 ","SPV1_08918",1278665,1279291,null,"+",208,114777175,null,null,"pfam04356","Protein of unknown function (DUF489). Pr","COG2915","Uncharacterized protein involved in puri"]
["hypothetical protein SPV1_08923 ","SPV1_08923",1279376,1279630,null,"+",84,114777176]
["outer membrane protein ","SPV1_08928",1279627,1280265,null,"+",212,114777177,null,null,"pfam00691,cd01563","OmpA family. The Pfam entry also include ; Threonine synthase is a pyridoxal phosph","COG2885","Outer membrane protein and related pepti"]
["sulfate permease family protein ","SPV1_08933",1280395,1281129,null,"+",244,114777178,null,null,"pfam00916","Sulfate transporter family. Mutations in","COG0659","Sulfate permease and related transporter"]
["Sulfate permease family protein ","SPV1_08938",1281101,1281925,null,"+",274,114777179,null,null,"pfam00916,pfam01740","Sulfate transporter family. Mutations in ; STAS domain. The STAS (after Sulphate Tr","COG0659","Sulfate permease and related transporter"]
["hypothetical protein SPV1_08943 ","SPV1_08943",1281979,1282329,null,"+",116,114777180,null,null,"pfam07366","SnoaL-like polyketide cyclase. This fami","COG4460","Uncharacterized protein conserved in bac"]
["hypothetical protein SPV1_08948 ","SPV1_08948",1282559,1283032,null,"+",157,114777181,null,null,"pfam07238","PilZ domain. This domain is found in a w"]
["ABC-type branched-chain amino acid transport systems periplasmic component-like protein ","SPV1_08953",1283060,1285006,null,"-",648,114777182,null,null,"cd06339,pfam10738","This subgroup includes periplasmic bindi ; Probable lipoprotein LpqN. This family i","COG0683","ABC-type branched-chain amino acid trans"]
["hypothetical protein SPV1_08958 ","SPV1_08958",1285005,1285859,null,"+",284,114777183,null,null,"pfam00590","Tetrapyrrole (Corrin/Porphyrin) Methylas","COG0313","Predicted methyltransferases [General fu"]
[]
[{"$nulls":5},154490797,"Bacteria,Bacteroidetes/Chlorobi group,Bacteroidetes,Bacteroidia,Bacteroidales,Porphyromonadaceae,Parabacteroides,Parabacteroides merdae,Parabacteroides merdae ATCC 43184"]
["hypothetical protein PARMER_00704 ","PARMER_00704",733335,735194,null,"+",619,154490787,null,null,"pfam07992","Pyridine nucleotide-disulphide oxidoredu","COG0644","Dehydrogenases (flavoproteins) [Energy p"]
["hypothetical protein PARMER_00705 ","PARMER_00705",735316,736767,null,"+",483,154490788,null,null,"pfam07859,cd01833","alpha/beta hydrolase fold. This catalyti ; SGNH_hydrolase subfamily, similar to Rum","COG0657,COG2755","Esterase/lipase [Lipid metabolism]"]
["hypothetical protein PARMER_00706 ","PARMER_00706",736774,737622,null,"+",282,154490789,null,null,"pfam01120","Alpha-L-fucosidase. ","COG3669","Alpha-L-fucosidase [Carbohydrate transpo"]
["hypothetical protein PARMER_00707 ","PARMER_00707",737837,738085,null,"+",82,154490790,null,null,"pfam07470","Glycosyl Hydrolase Family 88. Unsaturate","COG4225","Predicted unsaturated glucuronyl hydrola"]
["hypothetical protein PARMER_00708 ","PARMER_00708",738200,742156,null,"+",1318,154490791,null,null,"pfam04326","Divergent AAA domain. This family is rel","COG2865","Predicted transcriptional regulator cont"]
["hypothetical protein PARMER_00709 ","PARMER_00709",742153,743313,null,"-",386,154490792,null,null,"cd06174","The Major Facilitator Superfamily (MFS) ","COG2814","Arabinose efflux permease [Carbohydrate "]
["hypothetical protein PARMER_00710 ","PARMER_00710",743543,745909,null,"+",788,154490793,null,null,"pfam02687,pfam02687,cd04817","Predicted permease. This is a family of  ; Predicted permease. This is a family of  ; PA_VapT_like: Protease-associated domain","COG0577,COG0577,COG2403","ABC-type antimicrobial peptide transport ; ABC-type antimicrobial peptide transport ; Predicted GTPase [General function predi"]
["hypothetical protein PARMER_00711 ","PARMER_00711",745943,746553,null,"+",204,154490794]
["hypothetical protein PARMER_00712 ","PARMER_00712",746554,746750,null,"-",65,154490795,null,null,"pfam05717","IS66 Orf2 like protein. This protein is "]
["hypothetical protein PARMER_00713 ","PARMER_00713",746734,747090,null,"-",118,154490796,{"$nulls":4},"COG0386","Glutathione peroxidase [Posttranslationa"]
["hypothetical protein PARMER_00714 ","PARMER_00714",747270,749093,null,"-",607,154490797,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein PARMER_00715 ","PARMER_00715",749041,750411,null,"-",456,154490798,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd00296","SIR2 superfamily of proteins includes si","COG0846","NAD-dependent protein deacetylases, SIR2"]
["hypothetical protein PARMER_00716 ","PARMER_00716",750435,751463,null,"-",342,154490799,{"$nulls":4},"COG2378","Predicted transcriptional regulator [Tra"]
["hypothetical protein PARMER_00717 ","PARMER_00717",751537,755052,null,"-",1171,154490800,null,null,"pfam01443,pfam01443,pfam07632","Viral (Superfamily 1) RNA helicase. Heli ; Viral (Superfamily 1) RNA helicase. Heli ; Protein of unknown function (DUF1593). A","COG0507","ATP-dependent exoDNAse (exonuclease V), "]
["hypothetical protein PARMER_00718 ","PARMER_00718",755150,759454,null,"-",1434,154490801,null,null,"pfam04851,pfam04313","Type III restriction enzyme, res subunit ; Type I restriction enzyme R protein N te","COG0610","Type I site-specific restriction-modific"]
["hypothetical protein PARMER_00719 ","PARMER_00719",759485,760639,null,"-",384,154490802,null,null,"pfam01420,pfam01420","Type I restriction modification DNA spec ; Type I restriction modification DNA spec","COG0732","Restriction endonuclease S subunits [Def"]
["hypothetical protein PARMER_00720 ","PARMER_00720",760623,763211,null,"-",862,154490803,null,null,"pfam02384,pfam01576,pfam03290","N-6 DNA Methylase. Restriction-modificat ; Myosin tail. The myosin molecule is a mu ; Vaccinia virus I7 processing peptidase. ","COG0286,COG1196","Type I restriction-modification system m ; Chromosome segregation ATPases [Cell div"]
["hypothetical protein PARMER_00721 ","PARMER_00721",763323,763532,null,"-",69,154490804,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG1476","Predicted transcriptional regulators [Tr"]
["hypothetical protein PARMER_00722 ","PARMER_00722",763742,764596,null,"+",284,154490805,null,null,"pfam04471","Restriction endonuclease. Prokaryotic fa","COG1715","Restriction endonuclease [Defense mechan"]
["hypothetical protein PARMER_00723 ","PARMER_00723",764731,765954,null,"-",407,154490806,{"$nulls":4},"COG3378","Phage associated DNA primase [General fu"]
["hypothetical protein PARMER_00724 ","PARMER_00724",766012,766302,null,"-",96,154490807,{"$nulls":4},"COG0484","DnaJ-class molecular chaperone with C-te"]
[]
[{"$nulls":5},84701997,"Bacteria,Proteobacteria,Alphaproteobacteria,Parvularculales,Parvularculaceae,Parvularcula,Parvularcula bermudensis,Parvularcula bermudensis HTCC2503"]
["hypothetical protein PB2503_03477 ","PB2503_03477",629736,630227,null,"+",163,84701987,null,null,"pfam00201,pfam03177","UDP-glucoronosyl and UDP-glucosyl transf ; Non-repetitive/WGA-negative nucleoporin.","COG1487","Predicted nucleic acid-binding protein, "]
["hypothetical protein PB2503_03482 ","PB2503_03482",631003,631236,null,"+",77,84701988]
["hypothetical protein PB2503_03487 ","PB2503_03487",631311,632024,null,"+",237,84701989]
["hypothetical protein PB2503_03492 ","PB2503_03492",632337,633047,null,"+",236,84701990,null,null,"pfam04801","Sin-like protein conserved region. Famil"]
["hypothetical protein PB2503_03497 ","PB2503_03497",633828,634082,null,"-",84,84701991,null,null,"smart00440","C2C2 Zinc finger; Nucleic-acid-binding m","COG1594","DNA-directed RNA polymerase, subunit M/T"]
["UMUC-like DNA-repair protein ","PB2503_03502",634079,635335,null,"-",418,84701992,null,null,"cd00424","Y-family of DNA polymerases. Pol_Y's can","COG0389","Nucleotidyltransferase/DNA polymerase in"]
["hypothetical protein PB2503_03507 ","PB2503_03507",635494,635898,null,"+",134,84701993,null,null,"pfam02586","Uncharacterised ACR, COG2135. ","COG2135","Uncharacterized conserved protein [Funct"]
["hypothetical protein PB2503_03512 ","PB2503_03512",636001,636150,null,"+",49,84701994,null,null,"pfam02586","Uncharacterised ACR, COG2135. ","COG2135","Uncharacterized conserved protein [Funct"]
["hypothetical protein PB2503_03517 ","PB2503_03517",636147,637202,null,"-",351,84701995,null,null,"pfam00577","Fimbrial Usher protein. This protein is "]
["hypothetical protein PB2503_03522 ","PB2503_03522",637589,637963,null,"+",124,84701996]
["Piwi domain protein ","PB2503_03527",638325,639755,null,"-",476,84701997,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG2113","ABC-type proline/glycine betaine transpo"]
["hypothetical protein PB2503_03532 ","PB2503_03532",639752,641536,null,"-",594,84701998,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846","NAD-dependent protein deacetylases, SIR2"]
["hypothetical protein PB2503_03537 ","PB2503_03537",641523,642245,null,"-",240,84701999,null,null,"pfam07512","Protein of unknown function (DUF1526). ","COG4214","ABC-type xylose transport system, permea"]
["hypothetical protein PB2503_03542 ","PB2503_03542",642324,642860,null,"-",178,84702000,null,null,"pfam03428","Replication protein C. Replication prote","COG1349","Transcriptional regulators of sugar meta"]
["hypothetical protein PB2503_03547 ","PB2503_03547",643128,644198,null,"-",356,84702001,null,null,"pfam07398","Protein of unknown function (DUF1503). T"]
["hypothetical protein PB2503_03552 ","PB2503_03552",644372,644584,null,"-",70,84702002,null,null,"pfam05013","N-formylglutamate amidohydrolase. Formyl","COG0153","Galactokinase [Carbohydrate transport an"]
["hypothetical protein PB2503_03557 ","PB2503_03557",644604,644921,null,"-",105,84702003,null,null,"pfam05284","Protein of unknown function (DUF736). Th","COG5489","Uncharacterized conserved protein [Funct"]
["hypothetical protein PB2503_03562 ","PB2503_03562",644939,645184,null,"-",81,84702004,null,null,"pfam10038","Protein of unknown function (DUF2274). M","COG5639","Uncharacterized conserved small protein "]
["conjugal transfer protein trbI ","PB2503_03567",645189,646403,null,"-",404,84702005,null,null,"pfam03743","Bacterial conjugation TrbI-like protein.","COG2948","Type IV secretory pathway, VirB10 compon"]
["conjugal transfer protein trbG ","PB2503_03572",646400,647398,null,"-",332,84702006,null,null,"pfam03524","Conjugal transfer protein. This family i","COG3504","Type IV secretory pathway, VirB9 compone"]
["probable conjugal transfer trbf transmembrane protein ","PB2503_03577",647395,648093,null,"-",232,84702007,null,null,"pfam04585","Conjugal transfer protein. Family of pro","COG3701","Type IV secretory pathway, TrbF componen"]
[{"$nulls":5},84702443,"Bacteria,Proteobacteria,Alphaproteobacteria,Parvularculales,Parvularculaceae,Parvularcula,Parvularcula bermudensis,Parvularcula bermudensis HTCC2503"]
["probable conjugal transfer trbd transmembrane protein ","PB2503_05707",1090561,1090815,null,"+",84,84702433,null,null,"pfam05245","Conjugal transfer protein TrbD. This fam","COG5268","Type IV secretory pathway, TrbD componen"]
["conjugal transfer protein trbe ","PB2503_05712",1090809,1093280,null,"+",823,84702434,null,null,"pfam03135,cd03225","CagE, TrbE, VirB family, component of ty ; Domain I of the ABC component of a cobal","COG3451","Type IV secretory pathway, VirB4 compone"]
["possible conjugal transfer protein trbJ ","PB2503_05717",1093290,1093988,null,"+",232,84702435,null,null,"pfam07106","Tat binding protein 1(TBP-1)-interacting","COG5314","Conjugal transfer/entry exclusion protei"]
["probable conjugal transfer protein ","PB2503_05722",1093995,1095311,null,"+",438,84702436,null,null,"pfam04610,pfam06112","TrbL/VirB6 plasmid conjugal transfer pro ; Gammaherpesvirus capsid protein. This fa","COG3846","Type IV secretory pathway, TrbL componen"]
["conjugal transfer protein trbF ","PB2503_05727",1095315,1096007,null,"+",230,84702437,null,null,"pfam04585","Conjugal transfer protein. Family of pro","COG3701","Type IV secretory pathway, TrbF componen"]
["conjugal transfer protein trbG ","PB2503_05732",1096013,1097050,null,"+",345,84702438,null,null,"pfam03524","Conjugal transfer protein. This family i","COG3504","Type IV secretory pathway, VirB9 compone"]
["conjugal transfer protein trbI ","PB2503_05737",1097055,1098332,null,"+",425,84702439,null,null,"pfam03743","Bacterial conjugation TrbI-like protein.","COG2948","Type IV secretory pathway, VirB10 compon"]
["hypothetical protein PB2503_05742 ","PB2503_05742",1098329,1098565,null,"+",78,84702440,null,null,"pfam10038","Protein of unknown function (DUF2274). M","COG5639","Uncharacterized conserved small protein "]
["hypothetical protein PB2503_05747 ","PB2503_05747",1098570,1098872,null,"+",100,84702441,null,null,"pfam05284","Protein of unknown function (DUF736). Th","COG5489","Uncharacterized conserved protein [Funct"]
["hypothetical protein PB2503_05752 ","PB2503_05752",1098875,1100038,null,"-",387,84702442,"Rec-like endonuclease fused to uncharacterized N-terminal domain"]
["hypothetical protein PB2503_05757 ","PB2503_05757",1100038,1102338,null,"-",766,84702443,"PIWI domain containing protein",null,"cd04659,pfam09623","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; CRISPR-associated protein NE0113 (Cas_NE"]
["hypothetical protein PB2503_05762 ","PB2503_05762",1102551,1103465,null,"-",304,84702444,null,null,"pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
["hypothetical protein PB2503_05767 ","PB2503_05767",1103455,1104390,null,"-",311,84702445,{"$nulls":4},"COG5340","Predicted transcriptional regulator [Tra"]
["Phage integrase ","PB2503_05772",1104390,1105655,null,"-",421,84702446,null,null,"cd00801","Bacteriophage P4 integrase. P4-like inte","COG4974","Site-specific recombinase XerD [DNA repl"]
["resolvase ","PB2503_05777",1106043,1107548,null,"-",501,84702447,null,null,"pfam00239,pfam03961","Resolvase, N terminal domain. The N-term ; Protein of unknown function (DUF342). Th","COG1961,COG0264","Site-specific recombinases, DNA invertas ; Translation elongation factor Ts [Transl"]
["hypothetical protein PB2503_05782 ","PB2503_05782",1107698,1108078,null,"-",126,84702448]
["hypothetical protein PB2503_05787 ","PB2503_05787",1108221,1108556,null,"-",111,84702449,null,null,"pfam03254,pfam07420","Xyloglucan fucosyltransferase. Plant cel ; Protein of unknown function (DUF1509). T"]
["hypothetical protein PB2503_05792 ","PB2503_05792",1109044,1109310,null,"-",88,84702450]
["hypothetical protein PB2503_05797 ","PB2503_05797",1109341,1111179,null,"-",612,84702451,null,null,"cd01126","The TraG/TraD/VirD4 family are bacterial","COG3505","Type IV secretory pathway, VirD4 compone"]
["hypothetical protein PB2503_05802 ","PB2503_05802",1111431,1112498,null,"+",355,84702452,null,null,"pfam04556,pfam00162,pfam02424","DpmII restriction endonuclease. Members  ; Phosphoglycerate kinase. "]
["hypothetical protein PB2503_05807 ","PB2503_05807",1112537,1112878,null,"+",113,84702453,null,null,"pfam01975","Survival protein SurE. Escherichia coli "]
[{"$nulls":5},84702495,"Bacteria,Proteobacteria,Alphaproteobacteria,Parvularculales,Parvularculaceae,Parvularcula,Parvularcula bermudensis,Parvularcula bermudensis HTCC2503"]
["hypothetical protein PB2503_05967 ","PB2503_05967",1151192,1151488,null,"-",98,84702485]
["hypothetical protein PB2503_05972 ","PB2503_05972",1151604,1152044,null,"-",146,84702486,null,null,"pfam01665","Rotavirus non-structural protein NSP3. T"]
["hypothetical protein PB2503_05977 ","PB2503_05977",1152164,1153300,null,"+",378,84702487,null,null,"pfam04541,pfam02456","Herpesvirus virion protein U34. This pro ; Adenovirus IVa2 protein. IVa2 protein ca","COG1152","CO dehydrogenase/acetyl-CoA synthase alp"]
["hypothetical protein PB2503_05982 ","PB2503_05982",1153314,1153646,null,"+",110,84702488,null,null,"cd00204","ankyrin repeats;  ankyrin repeats mediat"]
["hypothetical protein PB2503_05987 ","PB2503_05987",1154192,1157464,null,"-",1090,84702489,null,null,"pfam04465,cd06391","Protein of unknown function (DUF499). Fa ; N-terminal leucine/isoleucine/valine-bin","COG1483","Predicted ATPase (AAA+ superfamily) [Gen"]
["hypothetical protein PB2503_05992 ","PB2503_05992",1157511,1160327,null,"-",938,84702490,null,null,"pfam06634,pfam01170,pfam10236","Protein of unknown function (DUF1156). T ; Putative RNA methylase family UPF0020. T ; Mitochondrial ribosomal death-associated","COG1743","Adenine-specific DNA methylase containin"]
["Possible ATPase ","PB2503_05997",1160344,1164600,null,"-",1418,84702491,null,null,"pfam02518,pfam03344","Histidine kinase-, DNA gyrase B-, and HS ; Daxx Family. The Daxx protein (also know","COG0323,COG5406","DNA mismatch repair enzyme (predicted AT ; Nucleosome binding factor SPN, SPT16 sub"]
["possible ATP-dependent RNA helicase ","PB2503_06002",1164597,1168118,null,"-",1173,84702492,null,null,"smart00487,cd00079,pfam05262","DEAD-like helicases superfamily; ","COG0553","Superfamily II DNA/RNA helicases, SNF2 f"]
["hypothetical protein PB2503_06007 ","PB2503_06007",1168244,1169248,null,"-",334,84702493,{"$nulls":4},"COG2378","Predicted transcriptional regulator [Tra"]
["hypothetical protein PB2503_06012 ","PB2503_06012",1169721,1171091,null,"+",456,84702494,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain"]
["hypothetical protein PB2503_06017 ","PB2503_06017",1171088,1172506,null,"+",472,84702495,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein PB2503_06022 ","PB2503_06022",1172512,1173927,null,"+",471,84702496,null,null,"pfam06032,pfam03337","Protein of unknown function (DUF917). Th ; Poxvirus F12L protein. ","COG5440","Uncharacterized conserved protein [Funct"]
["antirestriction protein ","PB2503_06027",1174261,1175160,null,"+",299,84702497,null,null,"pfam08401,pfam02274","Domain of unknown function (DUF1738). Th ; Amidinotransferase. This family contains","COG4227","Antirestriction protein [DNA replication"]
["hypothetical protein PB2503_06032 ","PB2503_06032",1175211,1175462,null,"-",83,84702498]
["hypothetical protein PB2503_06037 ","PB2503_06037",1175761,1176009,null,"+",82,84702499]
["hypothetical protein PB2503_06042 ","PB2503_06042",1176006,1176293,null,"+",95,84702500]
["hypothetical protein PB2503_06047 ","PB2503_06047",1176300,1177727,null,"-",475,84702501,null,null,"pfam03432,pfam07946","Relaxase/Mobilisation nuclease domain. R ; Protein of unknown function (DUF1682). T","COG1196","Chromosome segregation ATPases [Cell div"]
["hypothetical protein PB2503_06052 ","PB2503_06052",1177724,1178029,null,"-",101,84702502]
["putative hydrolase ","PB2503_06057",1178411,1179274,null,"-",287,84702503,null,null,"pfam00561","alpha/beta hydrolase fold. This catalyti","COG0596","Predicted hydrolases or acyltransferases"]
["putative hydrolase ","PB2503_06062",1179300,1180127,null,"-",275,84702504,null,null,"pfam00561","alpha/beta hydrolase fold. This catalyti","COG0596","Predicted hydrolases or acyltransferases"]
["transcriptional regulator, LysR family protein ","PB2503_06067",1180235,1181137,null,"+",300,84702505,null,null,"pfam00126,pfam03466","Bacterial regulatory helix-turn-helix pr ; LysR substrate binding domain. The struc","COG0583","Transcriptional regulator [Transcription"]
[]
[{"$nulls":5},229204037,"Bacteria,Bacteroidetes/Chlorobi group,Bacteroidetes,Sphingobacteria,Sphingobacteriales,Sphingobacteriaceae,Pedobacter,Pedobacter heparinus,Pedobacter heparinus DSM 2366"]
["hypothetical protein PhepDRAFT_4088 ","PhepDRAFT_4088",4630593,4631027,null,"-",144,229204027,null,null,"pfam05695,pfam00147","Plant protein of unknown function (DUF82 ; Fibrinogen beta and gamma chains, C-term","COG3264","Small-conductance mechanosensitive chann"]
["esterase/lipase ","PhepDRAFT_4089",4631031,4631876,null,"-",281,229204028,null,null,"pfam07859","alpha/beta hydrolase fold. This catalyti","COG0657","Esterase/lipase [Lipid metabolism]"]
["hypothetical protein PhepDRAFT_4090 ","PhepDRAFT_4090",4631900,4632592,null,"-",230,229204029,{"$nulls":4},"COG1201","Lhr-like helicases [General function pre"]
["amidohydrolase, imidazolonepropionase ","PhepDRAFT_4091",4632604,4633968,null,"-",454,229204030,null,null,"cd01299","Metallo-dependent hydrolases, subgroup A","COG1228","Imidazolonepropionase and related amidoh"]
["periplasmic component of the Tol biopolymer transport system ","PhepDRAFT_4092",4634114,4635754,null,"-",546,229204031,null,null,"pfam07676,pfam07676","WD40-like Beta Propeller Repeat. This fa ; WD40-like Beta Propeller Repeat. This fa","COG0823,COG0823","Periplasmic component of the Tol biopoly ; Periplasmic component of the Tol biopoly"]
["thiol:disulfide interchange protein ","PhepDRAFT_4093",4635754,4637544,null,"-",596,229204032,null,null,"cd02953,pfam08594","DsbD gamma family; DsbD gamma is the C-t ; Uncharacterised protein family (UPF0300)","COG4232","Thiol:disulfide interchange protein [Pos"]
["RagB/SusD domain-containing protein ","PhepDRAFT_4094",4637699,4639117,null,"-",472,229204033,null,null,"pfam07980","RagB, SusD and hypothetical proteins. Th"]
["outer membrane receptor for ferrienterochelin and colicins ","PhepDRAFT_4095",4639165,4642548,null,"-",1127,229204034,null,null,"pfam07715,pfam07660","TonB-dependent Receptor Plug Domain. The ; Secretin and TonB N terminus short domai","COG4771,COG1629","Outer membrane receptor for ferrienteroc ; Outer membrane receptor proteins, mostly"]
["Fe2+-dicitrate sensor, membrane component ","PhepDRAFT_4096",4642791,4643948,null,"-",385,229204035,null,null,"pfam04773,pfam10099","FecR protein. FecR is involved in regula ; Uncharacterized protein conserved in bac","COG3712","Fe2+-dicitrate sensor, membrane componen"]
["RNA polymerase sigma factor, sigma-70 family ","PhepDRAFT_4097",4644017,4644583,null,"-",188,229204036,null,null,"pfam08281,pfam04542","Sigma-70, region 4. Region 4 of sigma-70 ; Sigma-70 region 2. Region 2 of sigma-70 ","COG1595","DNA-directed RNA polymerase specialized "]
["hypothetical protein PhepDRAFT_4098 ","PhepDRAFT_4098",4645178,4647058,null,"+",626,229204037,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein PhepDRAFT_4099 ","PhepDRAFT_4099",4647060,4648139,null,"+",359,229204038,"Predicted nuclease of Sir2 family",null,"cd01150","Peroxisomal acyl-CoA oxidases (AXO) cata"]
["hypothetical protein PhepDRAFT_4100 ","PhepDRAFT_4100",4648182,4648405,null,"-",73,229204039]
["hypothetical protein PhepDRAFT_4101 ","PhepDRAFT_4101",4648406,4648636,null,"+",76,229204041]
["hypothetical protein PhepDRAFT_4102 ","PhepDRAFT_4102",4648658,4649032,null,"+",124,229204042,{"$nulls":4},"COG0503,COG3083","Adenine/guanine phosphoribosyltransferas ; Predicted hydrolase of alkaline phosphat"]
["acetyltransferase ","PhepDRAFT_4103",4649040,4649600,null,"+",186,229204043,null,null,"pfam00583","Acetyltransferase (GNAT) family. This fa","COG0456","Acetyltransferases [General function pre"]
["DNA-binding domain-containing protein, AraC-type ","PhepDRAFT_4104",4649597,4650481,null,"-",294,229204044,null,null,"smart00342,pfam02311","helix_turn_helix, arabinose operon contr ; AraC-like ligand binding domain. This fa","COG2207","AraC-type DNA-binding domain-containing "]
["L-arabinose isomerase ","PhepDRAFT_4105",4650568,4652049,null,"+",493,229204045,null,null,"cd00578","L-fucose isomerase (FucIase) and L-arabi","COG2160","L-arabinose isomerase [Carbohydrate tran"]
["arabinose efflux permease family protein ","PhepDRAFT_4106",4652054,4653154,null,"-",366,229204046,null,null,"pfam07690","Major Facilitator Superfamily. ","COG2814","Arabinose efflux permease [Carbohydrate "]
["ketosteroid isomerase-like protein ","PhepDRAFT_4107",4653426,4653851,null,"+",141,229204047,null,null,"pfam07366","SnoaL-like polyketide cyclase. This fami","COG3631","Ketosteroid isomerase-related protein [G"]
["hypothetical protein PhepDRAFT_4108 ","PhepDRAFT_4108",4653913,4655367,null,"+",484,229204048]
[]
[{"$nulls":5},229540345,"Bacteria,Planctomycetes,Planctomycetacia,Planctomycetales,Planctomycetaceae,Planctomyces,Planctomyces limnophilus,Planctomyces limnophilus DSM 3776"]
["hypothetical protein PlimDRAFT_42010 ","PlimDRAFT_42010",4701552,4701635,null,"-",27,229540335]
["transposase ","PlimDRAFT_42020",4702223,4702555,null,"-",110,229540336,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3293","Transposase and inactivated derivatives "]
["hypothetical protein PlimDRAFT_42030 ","PlimDRAFT_42030",4702620,4702850,null,"-",76,229540337,null,null,"pfam08218","Citrate lyase ligase C-terminal domain. ","COG3293","Transposase and inactivated derivatives "]
["hypothetical protein PlimDRAFT_42040 ","PlimDRAFT_42040",4702851,4702967,null,"-",38,229540338]
["hypothetical protein PlimDRAFT_42050 ","PlimDRAFT_42050",4703298,4703489,null,"-",63,229540339]
["hypothetical protein PlimDRAFT_42060 ","PlimDRAFT_42060",4703559,4704287,null,"-",242,229540340,null,null,"pfam10248,cd06451","Myelodysplasia-myeloid leukemia factor 1 ; Alanine-glyoxylate aminotransferase (AGA"]
["hypothetical protein PlimDRAFT_42070 ","PlimDRAFT_42070",4704321,4704530,null,"-",69,229540341]
["hypothetical protein PlimDRAFT_42080 ","PlimDRAFT_42080",4704531,4704755,null,"-",74,229540342,null,null,"pfam09028","Mac 1. The bacterial protein Mac 1 adopt"]
["hypothetical protein PlimDRAFT_42090 ","PlimDRAFT_42090",4705264,4705551,null,"-",95,229540343,null,null,"pfam05040,pfam05787","Heparan sulfate 2-O-sulfotransferase (HS ; Bacterial protein of unknown function (D"]
["hypothetical protein PlimDRAFT_42100 ","PlimDRAFT_42100",4705542,4707278,null,"+",578,229540344,"Predicted Sir2 family endonuclease fused to uncharacterized APAZ domain",null,"cd01406,cd03089","Sir2-like: Prokaryotic group of uncharac ; The phosphomannomutase/phosphoglucomutas","COG0846","NAD-dependent protein deacetylases, SIR2"]
["hypothetical protein PlimDRAFT_42110 ","PlimDRAFT_42110",4707473,4708696,null,"+",407,229540345,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG2382","Enterochelin esterase and related enzyme"]
["hypothetical protein PlimDRAFT_42120 ","PlimDRAFT_42120",4709048,4709869,null,"+",273,229540346]
["superfamily II helicase ","PlimDRAFT_42130",4709859,4712957,null,"+",1032,229540347,null,null,"pfam00270,smart00490,cd06547","DEAD/DEAH box helicase. Members of this  ; helicase superfamily c-terminal domain;  ; Endo-beta-N-acetylglucosaminidase (ENGas","COG1204","Superfamily II helicase [General functio"]
["hypothetical protein PlimDRAFT_42140 ","PlimDRAFT_42140",4713298,4713912,null,"+",204,229540348,{"$nulls":4},"COG4646","DNA methylase [Transcription / DNA repli"]
["hypothetical protein PlimDRAFT_42150 ","PlimDRAFT_42150",4713985,4714689,null,"+",234,229540349,null,null,"smart00490","helicase superfamily c-terminal domain; "]
["hypothetical protein PlimDRAFT_42160 ","PlimDRAFT_42160",4714747,4715232,null,"-",161,229540350,null,null,"pfam08937,pfam07364","MTH538 TIR-like domain (DUF1863). This d ; Protein of unknown function (DUF1485). T","COG4271","Predicted nucleotide-binding protein con"]
["hypothetical protein PlimDRAFT_42170 ","PlimDRAFT_42170",4715834,4716373,null,"-",179,229540351,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG2205","Osmosensitive K+ channel histidine kinas"]
["transposase family protein ","PlimDRAFT_42180",4716363,4716986,null,"-",207,229540352,null,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3293","Transposase and inactivated derivatives "]
["hypothetical protein PlimDRAFT_42190 ","PlimDRAFT_42190",4717456,4717638,null,"+",60,229540353]
["ATPase family protein associated with various cellular activities (AAA) ","PlimDRAFT_42200",4717930,4719825,null,"+",631,229540354,null,null,"CHL00095","Clp protease ATP binding subunit","COG0542","ATP-binding subunits of Clp protease and"]
["hypothetical protein PlimDRAFT_42210 ","PlimDRAFT_42210",4719993,4720985,null,"+",330,229540355,null,null,"cd03794","This family is most closely related to t"]
[]
[{"$nulls":5},149175030,"Bacteria,Planctomycetes,Planctomycetacia,Planctomycetales,Planctomycetaceae,Planctomyces,Planctomyces maris,Planctomyces maris DSM 8797"]
["probable extracytoplasmic function alternative sigma factor ","PM8797T_25111",2400295,2400891,null,"+",198,149175020,null,null,"pfam04542,cd06212","Sigma-70 region 2. Region 2 of sigma-70  ; The oxygenase reductase FAD/NADH binding","COG1595","DNA-directed RNA polymerase specialized "]
["probable serine/threonine-protein kinase pknB ","PM8797T_25116",2400949,2405799,null,"+",1616,149175021,null,null,"cd00180,pfam04085,pfam01247,cd00616","Serine/Threonine protein kinases, cataly ; rod shape-determining protein MreC. MreC ; Ribosomal protein L35Ae. ","COG0515,COG1792","Serine/threonine protein kinase [General ; Cell shape-determining protein [Cell env"]
["hypothetical protein PM8797T_25121 ","PM8797T_25121",2405811,2406404,null,"-",197,149175022,null,null,"pfam07429","4-alpha-L-fucosyltransferase (Fuc4NAc tr"]
["hypothetical protein PM8797T_25126 ","PM8797T_25126",2406660,2407571,null,"+",303,149175023,null,null,"pfam01436,pfam01436,pfam01436","NHL repeat. The NHL (NCL-1, HT2A and LIN ; NHL repeat. The NHL (NCL-1, HT2A and LIN ; NHL repeat. The NHL (NCL-1, HT2A and LIN","COG3391","Uncharacterized conserved protein [Funct"]
["probable L-sorbosone dehydrogenase ","PM8797T_25131",2407600,2410212,null,"-",870,149175024,null,null,"pfam08450,CHL00183","SMP-30/Gluconolaconase/LRE-like region.  ; cytochrome c553; Provisional","COG2133,COG3258","Glucose/sorbosone dehydrogenases [Carboh ; Cytochrome c [Energy production and conv"]
["hypothetical protein PM8797T_25136 ","PM8797T_25136",2410556,2411959,null,"-",467,149175025,null,null,"pfam07394","Protein of unknown function (DUF1501). T","COG3083","Predicted hydrolase of alkaline phosphat"]
["hypothetical protein PM8797T_25141 ","PM8797T_25141",2412005,2412187,null,"-",60,149175026]
["hypothetical protein PM8797T_25146 ","PM8797T_25146",2412286,2412825,null,"+",179,149175027]
["hypothetical protein PM8797T_25151 ","PM8797T_25151",2413065,2414819,null,"+",584,149175028]
["hypothetical protein PM8797T_25156 ","PM8797T_25156",2415000,2416367,null,"+",455,149175029,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain",null,"cd01425","Ribosomal protein S2 (RPS2), involved in"]
["hypothetical protein PM8797T_25161 ","PM8797T_25161",2416357,2417898,null,"+",513,149175030,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["arylsulfatase A precursor ","PM8797T_25166",2418087,2419634,null,"+",515,149175031,null,null,"pfam00884","Sulfatase. ","COG3119","Arylsulfatase A and related enzymes [Ino"]
["hypothetical protein PM8797T_25171 ","PM8797T_25171",2419815,2420183,null,"+",122,149175032,null,null,"pfam07885","Ion channel. This family includes the tw"]
["hypothetical protein PM8797T_25176 ","PM8797T_25176",2420238,2420672,null,"-",144,149175033,null,null,"pfam10131","6-pyruvoyl-tetrahydropterin synthase rel"]
["hypothetical protein PM8797T_25181 ","PM8797T_25181",2420863,2420967,null,"+",34,149175034]
["probable lipase/esterase ","PM8797T_25186",2420964,2422175,null,"+",403,149175035,null,null,"pfam07859,cd00051","alpha/beta hydrolase fold. This catalyti ; EF-hand, calcium binding motif; A divers","COG0657,COG5126","Esterase/lipase [Lipid metabolism]"]
["Glyoxalase/bleomycin resistance protein/dioxygenase ","PM8797T_25191",2422268,2422702,null,"+",144,149175036,null,null,"pfam00903","Glyoxalase/Bleomycin resistance protein/","COG3565","Predicted dioxygenase of extradiol dioxy"]
["methionine aminopeptidase ","PM8797T_25196",2422721,2423509,null,"+",262,149175037,null,null,"cd01086","Methionine Aminopeptidase 1. E.C. 3.4.11","COG0024","Methionine aminopeptidase [Translation, "]
["hypothetical protein PM8797T_25201 ","PM8797T_25201",2423591,2423917,null,"-",108,149175038,{"$nulls":4},"COG2355,COG4993","Zn-dependent dipeptidase, microsomal dip ; Glucose dehydrogenase [Carbohydrate tran"]
["hypothetical protein PM8797T_25206 ","PM8797T_25206",2424087,2425052,null,"-",321,149175039,null,null,"pfam03372","Endonuclease/Exonuclease/phosphatase fam","COG3568","Metal-dependent hydrolase [General funct"]
["hypothetical protein PM8797T_25211 ","PM8797T_25211",2425051,2425119,null,"+",22,149175040]
[]
[{"$nulls":5},223987888,"Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacteriales,Enterobacteriaceae,Providencia,Providencia rettgeri,Providencia rettgeri DSM 1131"]
["hypothetical protein PROVRETT_00101 ","PROVRETT_00101",105568,106302,null,"-",244,223987878,null,null,"pfam03922,pfam03249","OmpW family. This family includes outer  ; Type specific antigen. There are several","COG3637","Opacity protein and related surface anti"]
["hypothetical protein PROVRETT_00102 ","PROVRETT_00102",106887,107474,null,"-",195,223987879,null,null,"pfam06067","Domain of unknown function (DUF932). Fam"]
["hypothetical protein PROVRETT_00103 ","PROVRETT_00103",107738,108163,null,"-",141,223987880,null,null,"pfam03230","Antirestriction protein. This family inc"]
["hypothetical protein PROVRETT_00104 ","PROVRETT_00104",108255,109118,null,"-",287,223987881,null,null,"cd00880","Era (E. coli Ras-like protein)-like.  Th","COG3596","Predicted GTPase [General function predi"]
["hypothetical protein PROVRETT_00105 ","PROVRETT_00105",109171,109938,null,"-",255,223987882,null,null,"MTH00096","NADH dehydrogenase subunit 5; Provisiona","COG3182","Uncharacterized iron-regulated membrane "]
["hypothetical protein PROVRETT_00106 ","PROVRETT_00106",110428,111015,null,"+",195,223987883,null,null,"PHA00330","putative replication initiation protein"]
["hypothetical protein PROVRETT_00107 ","PROVRETT_00107",111524,111808,null,"+",94,223987884]
["hypothetical protein PROVRETT_00109 ","PROVRETT_00109",111765,111923,null,"-",52,223987886]
["hypothetical protein PROVRETT_00108 ","PROVRETT_00108",111922,112425,null,"+",167,223987885,{"$nulls":4},"COG2378","Predicted transcriptional regulator [Tra"]
["hypothetical protein PROVRETT_00110 ","PROVRETT_00110",112444,113850,null,"+",468,223987887,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain",{"$nulls":3},"COG5103","Cell division control protein, negative "]
["hypothetical protein PROVRETT_00111 ","PROVRETT_00111",113816,115258,null,"+",480,223987888,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG2842","Uncharacterized ATPase, putative transpo"]
["hypothetical protein PROVRETT_00112 ","PROVRETT_00112",115459,116268,null,"+",269,223987889,null,null,"pfam06100","Streptococcal 67 kDa myosin-cross-reacti","COG4716","Myosin-crossreactive antigen [Function u"]
["hypothetical protein PROVRETT_00113 ","PROVRETT_00113",116258,119368,null,"+",1036,223987890,null,null,"pfam00270,smart00490,pfam05833","DEAD/DEAH box helicase. Members of this  ; helicase superfamily c-terminal domain;  ; Fibronectin-binding protein A N-terminus","COG1204","Superfamily II helicase [General functio"]
["hypothetical protein PROVRETT_00115 ","PROVRETT_00115",119689,120936,null,"-",415,223987892,null,null,"cd00801","Bacteriophage P4 integrase. P4-like inte","COG0582","Integrase [DNA replication, recombinatio"]
["hypothetical protein PROVRETT_00114 ","PROVRETT_00114",120935,121069,null,"+",44,223987891]
["hypothetical protein PROVRETT_00117 ","PROVRETT_00117",121218,121478,null,"+",86,223987893,null,null,"pfam03381","LEM3 (ligand-effect modulator 3) family "]
["hypothetical protein PROVRETT_00118 ","PROVRETT_00118",121502,121627,null,"+",41,223987894]
["hypothetical protein PROVRETT_00119 ","PROVRETT_00119",121624,122847,null,"+",407,223987895,null,null,"pfam00144,pfam04614","Beta-lactamase. This family appears to b ; Pex19 protein family. ","COG1680","Beta-lactamase class C and other penicil"]
["hypothetical protein PROVRETT_00120 ","PROVRETT_00120",123051,123494,null,"+",147,223987896,null,null,"pfam00245","Alkaline phosphatase. "]
["hypothetical protein PROVRETT_00121 ","PROVRETT_00121",123677,124180,null,"+",167,223987897,null,null,"pfam02534","TraG/TraD family. These proteins contain"]
["hypothetical protein PROVRETT_00122 ","PROVRETT_00122",124237,125313,null,"-",358,223987898,null,null,"pfam03739","Predicted permease YjgP/YjgQ family. Mem","COG0795","Predicted permeases [General function pr"]
[]
[{"$nulls":5},84686687,"Bacteria,Proteobacteria,Alphaproteobacteria,Rhodobacterales,unclassified Rhodobacterales,Rhodobacterales bacterium HTCC2654"]
["T-DNA border endonuclease ","RB2654_00545",3164704,3166632,null,"-",642,84686677,null,null,"pfam03432","Relaxase/Mobilisation nuclease domain. R","COG2081","Predicted flavoproteins [General functio"]
["hypothetical protein RB2654_00550 ","RB2654_00550",3166625,3167245,null,"-",206,84686678,null,null,"cd00569,pfam04169","Helix-turn-helix domain of Hin and relat ; Domain of unknown function (DUF404). ","COG4753","Response regulator containing CheY-like "]
["hypothetical protein RB2654_00555 ","RB2654_00555",3167771,3168004,null,"-",77,84686679]
["hypothetical protein RB2654_00560 ","RB2654_00560",3168583,3168921,null,"-",112,84686680,null,null,"pfam05284","Protein of unknown function (DUF736). Th","COG5489","Uncharacterized conserved protein [Funct"]
["hypothetical protein RB2654_00565 ","RB2654_00565",3169823,3170425,null,"+",200,84686681,null,null,"pfam07929","Plasmid pRiA4b ORF-3-like protein. Membe","COG1885","Uncharacterized protein conserved in arc"]
["hypothetical protein RB2654_00570 ","RB2654_00570",3170417,3170905,null,"-",162,84686682]
["RNA-directed DNA polymerase ","RB2654_00575",3172347,3173141,null,"+",264,84686683,null,null,"cd03487","RT_Bac_retron_II: Reverse transcriptases","COG1743","Adenine-specific DNA methylase containin"]
["hypothetical protein RB2654_00580 ","RB2654_00580",3173351,3174142,null,"-",263,84686684]
["putative uncharacterized protein ","RB2654_00585",3174155,3175384,null,"-",409,84686685,null,null,"pfam07804,pfam07805","HipA-like C-terminal domain. The members ; HipA-like N-terminal domain. The members","COG3550","Toxin module HipA, protein kinase of pho"]
["hypothetical protein RB2654_00590 ","RB2654_00590",3175365,3175964,null,"-",199,84686686,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG3620","Predicted transcriptional regulator with"]
["hypothetical protein RB2654_00595 ","RB2654_00595",3176209,3177684,null,"-",491,84686687,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein RB2654_00600 ","RB2654_00600",3177681,3179015,null,"-",444,84686688,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain",{"$nulls":3},"COG0598","Mg2+ and Co2+ transporters [Inorganic io"]
["hypothetical protein RB2654_00605 ","RB2654_00605",3179325,3179918,null,"-",197,84686689,null,null,"pfam04079","Putative transcriptional regulators (Ypu","COG1386","Chromosome segregation and condensation "]
["hypothetical protein RB2654_00610 ","RB2654_00610",3179918,3180802,null,"-",294,84686690,null,null,"pfam07183","Protein of unknown function (DUF1403). T","COG4468","Galactose-1-phosphate uridyltransferase "]
["yld ","RB2654_00615",3180916,3182025,null,"+",369,84686691,null,null,"cd00799","Cre recombinase, C-terminal catalytic do","COG4974","Site-specific recombinase XerD [DNA repl"]
["replication protein C ","RB2654_00620",3182038,3183216,null,"-",392,84686692,null,null,"pfam03428","Replication protein C. Replication prote","COG1196","Chromosome segregation ATPases [Cell div"]
["hypothetical protein RB2654_00625 ","RB2654_00625",3183545,3184279,null,"-",244,84686693,null,null,"pfam02195,pfam03896","ParB-like nuclease domain. ","COG1475","Stage 0 sporulation protein J (antagonis"]
["replication protein a ","RB2654_00630",3184564,3185862,null,"-",432,84686694,null,null,"PHA02519","plasmid partition protein SopA; Reviewed","COG1192","ATPases involved in chromosome partition"]
["hypothetical protein RB2654_00635 ","RB2654_00635",3186129,3186467,null,"-",112,84686695,null,null,"pfam05284","Protein of unknown function (DUF736). Th","COG5489","Uncharacterized conserved protein [Funct"]
["hypothetical protein RB2654_00640 ","RB2654_00640",3186451,3186708,null,"+",85,84686696,null,null,"pfam01098,pfam07299","Cell cycle protein. This entry includes  ; Fibronectin-binding protein (FBP). This "]
["hypothetical protein RB2654_00645 ","RB2654_00645",3187023,3188186,null,"-",387,84686697,null,null,"cd00009,pfam00723","The AAA+ (ATPases Associated with a wide ; Glycosyl hydrolases family 15. ","COG1373","Predicted ATPase (AAA+ superfamily) [Gen"]
[]
[{"$nulls":5},2298719100,"Bacteria,Bacteroidetes/Chlorobi group,Bacteroidetes,Sphingobacteria,Sphingobacteriales,Flexibacteraceae,Spirosoma,Spirosoma linguale,Spirosoma linguale DSM 74"]
["signal transduction histidine kinase, COG0642 ","SlinDRAFT_45700",5438745,5440190,null,"-",481,229871900,null,null,"pfam02518,cd00082,pfam00672","Histidine kinase-, DNA gyrase B-, and HS ; Histidine Kinase A (dimerization/phospho ; HAMP domain. ","COG0642","Signal transduction histidine kinase [Si"]
["response regulator with CheY-like receiver domain and winged-helix DNA-binding domain ","SlinDRAFT_45710",5440210,5440944,null,"-",244,229871901,null,null,"CHL00148","Ycf27; Reviewed","COG0745","Response regulators consisting of a CheY"]
["methionine-S-sulfoxide reductase ","SlinDRAFT_45720",5441062,5441694,null,"-",210,229871902,null,null,"pfam01625","Peptide methionine sulfoxide reductase. ","COG0225","Peptide methionine sulfoxide reductase ["]
["methionine-R-sulfoxide reductase ","SlinDRAFT_45730",5441719,5442222,null,"-",167,229871903,null,null,"pfam01641","SelR domain. Methionine sulfoxide reduct","COG0229,COG2213","Conserved domain frequently associated w ; Phosphotransferase system, mannitol-spec"]
["hypothetical protein SlinDRAFT_45740 ","SlinDRAFT_45740",5442256,5443014,null,"-",252,229871904]
["predicted hydrolase or acyltransferase of alpha/beta superfamily ","SlinDRAFT_45750",5443169,5444062,null,"-",297,229871905,null,null,"pfam00561,pfam02864","alpha/beta hydrolase fold. This catalyti ; STAT protein, DNA binding domain. STAT p","COG0596,COG1107","Predicted hydrolases or acyltransferases ; Archaea-specific RecJ-like exonuclease, "]
["hypothetical protein SlinDRAFT_45760 ","SlinDRAFT_45760",5444170,5444784,null,"-",204,229871906,null,null,"pfam01810","LysE type translocator. This family cons","COG1280","Putative threonine efflux protein [Amino"]
["hypothetical protein SlinDRAFT_45770 ","SlinDRAFT_45770",5444788,5445903,null,"-",371,229871907,null,null,"pfam03133","Tubulin-tyrosine ligase family. Tubulins","COG0189","Glutathione synthase/Ribosomal protein S"]
["hypothetical protein SlinDRAFT_45780 ","SlinDRAFT_45780",5445890,5446621,null,"-",243,229871908]
["addiction module antidote protein, HigA family ","SlinDRAFT_45790",5446924,5447229,null,"+",101,229871909,null,null,"pfam01381","Helix-turn-helix. This large family of D","COG3093","Plasmid maintenance system antidote prot"]
["Piwi domain-containing protein ","SlinDRAFT_45800",5447279,5449174,null,"+",631,229871910,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein SlinDRAFT_45810 ","SlinDRAFT_45810",5449184,5450254,null,"+",356,229871911,"Predicted nuclease of Sir2 family",null,"cd00296","SIR2 superfamily of proteins includes si"]
["transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains ","SlinDRAFT_45820",5450376,5450525,null,"-",49,229871912,null,null,"pfam02954","Bacterial regulatory protein, Fis family","COG3604","Transcriptional regulator containing GAF"]
["hypothetical protein SlinDRAFT_45830 ","SlinDRAFT_45830",5450723,5450929,null,"+",68,229871913]
["short-chain dehydrogenase of unknown substrate specificity ","SlinDRAFT_45840",5451361,5452218,null,"-",285,229871914,null,null,"pfam00106","short chain dehydrogenase. This family c","COG0300","Short-chain dehydrogenases of various su"]
["uncharacterized conserved protein ","SlinDRAFT_45850",5452218,5452757,null,"-",179,229871915,null,null,"pfam04264","YceI-like domain. Escherichia coli YceI ","COG2353","Uncharacterized conserved protein [Funct"]
["DNA-binding domain-containing protein, AraC-type ","SlinDRAFT_45860",5452829,5453713,null,"-",294,229871916,null,null,"smart00342,pfam02311","helix_turn_helix, arabinose operon contr ; AraC-like ligand binding domain. This fa","COG2207,COG1917","AraC-type DNA-binding domain-containing  ; Uncharacterized conserved protein, conta"]
["response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains ","SlinDRAFT_45870",5453726,5455192,null,"-",488,229871917,null,null,"pfam00158,cd00156,pfam02954,pfam02646","Sigma-54 interaction domain. ","COG2204","Response regulator containing CheY-like "]
["PAS domain S-box protein ","SlinDRAFT_45880",5455195,5457549,null,"-",784,229871918,null,null,"pfam02518,cd00156,cd00082,pfam00989","Histidine kinase-, DNA gyrase B-, and HS ; Signal receiver domain; originally thoug ; Histidine Kinase A (dimerization/phospho ; PAS fold. The PAS fold corresponds to th","COG0642,COG3437,COG2202","Signal transduction histidine kinase [Si ; Response regulator containing a CheY-lik ; FOG: PAS/PAC domain [Signal transduction"]
["hypothetical protein SlinDRAFT_45890 ","SlinDRAFT_45890",5457926,5458417,null,"+",163,229871919]
["electron transfer protein with DM13 domain ","SlinDRAFT_45900",5458428,5458916,null,"+",162,229871920,null,null,"pfam10517","Electron transfer DM13. The DM13 domain ","COG1038","Pyruvate carboxylase [Energy production "]
[]
[]
[{"$nulls":5},83954752,"Bacteria,Proteobacteria,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Sulfitobacter,Sulfitobacter sp. NAS-14.1"]
["histidyl-tRNA synthetase ","NAS141_16013",2525881,2527389,null,"+",502,83954742,null,null,"cd00773,cd00773,cd00859","Class II Histidinyl-tRNA synthetase (His ; Class II Histidinyl-tRNA synthetase (His ; HisRS Histidyl-anticodon binding domain.","COG0124","Histidyl-tRNA synthetase [Translation, r"]
["ATP phosphoribosyltransferase regulatory subunit ","NAS141_16018",2527389,2528468,null,"+",359,83954743,null,null,"cd00773,cd00773","Class II Histidinyl-tRNA synthetase (His ; Class II Histidinyl-tRNA synthetase (His","COG3705","ATP phosphoribosyltransferase involved i"]
["ATP phosphoribosyltransferase ","NAS141_16023",2528465,2529154,null,"+",229,83954744,null,null,"pfam01634","ATP phosphoribosyltransferase. ","COG0040","ATP phosphoribosyltransferase [Amino aci"]
["hypothetical protein NAS141_16028 ","NAS141_16028",2529290,2529721,null,"-",143,83954745,null,null,"pfam07370","Protein of unknown function (DUF1489). T","COG5458","Uncharacterized conserved protein [Funct"]
["ribonucleoside-diphosphate reductase, putative ","NAS141_16033",2529845,2532127,null,"+",760,83954746,null,null,"cd02888,pfam05458","RNR, class I_like family. Ribonucleotide ; Cd27 binding protein (Siva). Siva binds ","COG0209","Ribonucleotide reductase, alpha subunit "]
["ATP dependent lon ATPase ","NAS141_16038",2532449,2533498,null,"+",349,83954747,null,null,"cd00009,pfam10009","The AAA+ (ATPases Associated with a wide ; Uncharacterized protein conserved in bac","COG0466","ATP-dependent Lon protease, bacterial ty"]
["hypothetical protein NAS141_16043 ","NAS141_16043",2533580,2534032,null,"+",150,83954748]
["hypothetical protein NAS141_16048 ","NAS141_16048",2534034,2534285,null,"+",83,83954749,null,null,"pfam00002","7 transmembrane receptor (Secretin famil"]
["hypothetical protein NAS141_16053 ","NAS141_16053",2534384,2536258,null,"-",624,83954750,null,null,"pfam03883","Protein of unknown function (DUF328). Me","COG3022","Uncharacterized protein conserved in bac"]
["hypothetical protein NAS141_16058 ","NAS141_16058",2536526,2537362,null,"-",278,83954751,null,null,"cd06390","N-terminal leucine/isoleucine/valine-bin","COG3573,COG2401","Predicted oxidoreductase [General functi ; ABC-type ATPase fused to a predicted ace"]
["hypothetical protein NAS141_16063 ","NAS141_16063",2537958,2539400,null,"-",480,83954752,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3663","G:T/U mismatch-specific DNA glycosylase "]
["hypothetical protein NAS141_16068 ","NAS141_16068",2539397,2540743,null,"-",448,83954753,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain",null,"cd05534","DNA polymerase type-B zeta subfamily cat"]
["hypothetical protein NAS141_16073 ","NAS141_16073",2540904,2542235,null,"-",443,83954754,{"$nulls":4},"COG0324","tRNA delta(2)-isopentenylpyrophosphate t"]
["hypothetical protein NAS141_16078 ","NAS141_16078",2543002,2543334,null,"-",110,83954755,null,null,"pfam03415","Clostripain family. "]
["hypothetical protein NAS141_16083 ","NAS141_16083",2543327,2543446,null,"-",39,83954756]
["hypothetical protein NAS141_16088 ","NAS141_16088",2543467,2543805,null,"-",112,83954757]
["hypothetical protein NAS141_16093 ","NAS141_16093",2544209,2544931,null,"+",240,83954758]
["hypothetical protein NAS141_16098 ","NAS141_16098",2545032,2547593,null,"-",853,83954759,null,null,"cd00079,pfam04851,pfam00176","Helicase superfamily c-terminal domain;  ; Type III restriction enzyme, res subunit ; SNF2 family N-terminal domain. This doma","COG0553,COG0553,COG0553","Superfamily II DNA/RNA helicases, SNF2 f ; Superfamily II DNA/RNA helicases, SNF2 f ; Superfamily II DNA/RNA helicases, SNF2 f"]
["hypothetical protein NAS141_16103 ","NAS141_16103",2547595,2549394,null,"-",599,83954760,null,null,"pfam02540,pfam02622","NAD synthase. NAD synthase (EC:6.3.5.1)  ; Uncharacterized ACR, COG1678. ","COG4757","Predicted alpha/beta hydrolase [General "]
["hypothetical protein NAS141_16108 ","NAS141_16108",2549391,2550485,null,"-",364,83954761,null,null,"pfam03547,pfam07574","Membrane transport protein. This family  ; Nse1 non-SMC component of SMC5-6 complex"]
["Exodeoxyribonuclease V, beta subunit ","NAS141_16113",2550602,2553808,null,"-",1068,83954762,null,null,"pfam00580,pfam00580,pfam06618","UvrD/REP helicase. The Rep family helica ; UvrD/REP helicase. The Rep family helica ; Protein of unknown function (DUF1148). T","COG1074","ATP-dependent exoDNAse (exonuclease V) b"]
[]
[{"$nulls":5},229584954,"Archaea,Crenarchaeota,Thermoprotei,Sulfolobales,Sulfolobaceae,Sulfolobus,Sulfolobus islandicus,Sulfolobus islandicus M.16.27"]
["hypothetical protein M1627_1519 ","M1627_1519",1444659,1445000,null,"+",113,229584944,null,null,"pfam04266","ASCH domain. The ASCH domain adopts a be"]
["hypothetical protein M1627_1520 ","M1627_1520",1444997,1445629,null,"+",210,229584945,null,null,"smart00098,pfam09462","Alkaline phosphatase homologues; ","COG3623","Putative L-xylulose-5-phosphate 3-epimer"]
["hypothetical protein M1627_1521 ","M1627_1521",1445640,1446305,null,"+",221,229584946]
["hypothetical protein M1627_1522 ","M1627_1522",1447032,1447367,null,"+",111,229584947,{"$nulls":4},"COG2902","NAD-specific glutamate dehydrogenase [Am"]
["hypothetical protein M1627_1523 ","M1627_1523",1447535,1448104,null,"+",189,229584948,null,null,"cd01912","proteasome beta subunit. The 20S proteas","COG0638","20S proteasome, alpha and beta subunits "]
["hypothetical protein M1627_1524 ","M1627_1524",1448390,1449457,null,"-",355,229584949]
["hypothetical protein M1627_2859 ","M1627_2859",1449734,1449859,null,"-",41,229584950]
["hypothetical protein M1627_1525 ","M1627_1525",1449837,1450004,null,"-",55,229584951,null,null,"pfam01555","DNA methylase. Members of this family ar","COG0863","DNA modification methylase [DNA replicat"]
["hypothetical protein M1627_1526 ","M1627_1526",1450182,1451294,null,"+",370,229584952,null,null,"pfam06738","Protein of unknown function (DUF1212). T"]
["hypothetical protein M1627_1527 ","M1627_1527",1451298,1452029,null,"+",243,229584953,null,null,"pfam09989","CoA enzyme activase uncharacterised doma","COG5099","RNA-binding protein of the Puf family, t"]
["hypothetical protein M1627_1528 ","M1627_1528",1452026,1453405,null,"-",459,229584954,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein M1627_1529 ","M1627_1529",1453402,1453677,null,"-",91,229584955,"HTH (ArsR or MarR)",null,"smart00347","helix_turn_helix multiple antibiotic res","COG4190","Predicted transcriptional regulator [Tra"]
["hypothetical protein M1627_1530 ","M1627_1530",1454742,1455098,null,"-",118,229584956]
["hypothetical protein M1627_1531 ","M1627_1531",1455172,1455633,null,"+",153,229584957]
["hypothetical protein M1627_1532 ","M1627_1532",1455602,1458781,null,"-",1059,229584958,null,null,"cd01127","Bacterial conjugation protein TrwB,  ATP","COG0433,COG4856","HerA helicase [Replication, recombinatio ; Uncharacterized protein conserved in bac"]
["hypothetical protein M1627_1533 ","M1627_1533",1458983,1459576,null,"-",197,229584959,null,null,"CHL00120","photosystem I subunit XI; Validated"]
["hypothetical protein M1627_1534 ","M1627_1534",1459644,1459826,null,"-",60,229584960]
["hypothetical protein M1627_1535 ","M1627_1535",1459819,1460016,null,"-",65,229584961,null,null,"pfam01457","Leishmanolysin. "]
["zinc finger SWIM domain protein ","M1627_1536",1460007,1460333,null,"-",108,229584962,null,null,"PHA01769","hypothetical protein"]
["hypothetical protein M1627_1537 ","M1627_1537",1460461,1460730,null,"+",89,229584963,null,null,"smart00347","helix_turn_helix multiple antibiotic res","COG1321","Mn-dependent transcriptional regulator ["]
["death-on-curing family protein ","M1627_1538",1460743,1461201,null,"+",152,229584964,null,null,"pfam02661","Fic/DOC family. This family consists of ","COG3654","Prophage maintenance system killer prote"]
[]
[{"$nulls":5},229579410,"Archaea,Crenarchaeota,Thermoprotei,Sulfolobales,Sulfolobaceae,Sulfolobus,Sulfolobus islandicus,Sulfolobus islandicus Y.G.57.14"]
["hypothetical protein YG5714_1616 ","YG5714_1616",1468939,1469379,null,"+",146,229579400]
["hypothetical protein YG5714_1617 ","YG5714_1617",1469434,1469604,null,"+",56,229579401]
["transcriptional regulator, MarR family ","YG5714_1618",1469601,1469903,null,"-",100,229579402,null,null,"smart00347","helix_turn_helix multiple antibiotic res","COG1846","Transcriptional regulators [Transcriptio"]
["hypothetical protein YG5714_1619 ","YG5714_1619",1470000,1470284,null,"+",94,229579403,null,null,"smart00418","helix_turn_helix, Arsenical Resistance O","COG4742","Predicted transcriptional regulator [Tra"]
["hypothetical protein YG5714_1620 ","YG5714_1620",1470430,1471053,null,"+",207,229579404]
["hypothetical protein YG5714_1621 ","YG5714_1621",1471066,1473084,null,"+",672,229579405,{"$nulls":4},"COG3000","Sterol desaturase [Lipid metabolism]"]
["hypothetical protein YG5714_1622 ","YG5714_1622",1473707,1476808,null,"+",1033,229579406,null,null,"pfam05175,pfam04368,cd06281","Methyltransferase small domain. This dom ; Protein of unknown function (DUF507). Ba ; This group includes the ligand-binding d","COG2813","16S RNA G1207 methylase RsmC [Translatio"]
["hypothetical protein YG5714_1623 ","YG5714_1623",1477039,1477308,null,"+",89,229579407]
["hypothetical protein YG5714_1624 ","YG5714_1624",1477596,1478708,null,"+",370,229579408,null,null,"pfam07690","Major Facilitator Superfamily. ","COG4720","Predicted membrane protein [Function unk"]
["hypothetical protein YG5714_1625 ","YG5714_1625",1478712,1479443,null,"+",243,229579409]
["stem cell self-renewal protein Piwi domain protein ","YG5714_1626",1479440,1480819,null,"-",459,229579410,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["hypothetical protein YG5714_1627 ","YG5714_1627",1480816,1481091,null,"-",91,229579411,"HTH (ArsR or MarR)",null,"smart00347","helix_turn_helix multiple antibiotic res","COG4190","Predicted transcriptional regulator [Tra"]
["hypothetical protein YG5714_1628 ","YG5714_1628",1482368,1482850,null,"+",160,229579412]
["hypothetical protein YG5714_1629 ","YG5714_1629",1482836,1485880,null,"-",1014,229579413,null,null,"cd01126,pfam01978,pfam06519,pfam09989,pfam00829","The TraG/TraD/VirD4 family are bacterial ; Sugar-specific transcriptional regulator ; TolA protein. This family consists of se ; CoA enzyme activase uncharacterised doma ; Ribosomal prokaryotic L21 protein. ","COG3505,COG2512","Type IV secretory pathway, VirD4 compone ; Predicted membrane-associated trancripti"]
["hypothetical protein YG5714_1630 ","YG5714_1630",1485989,1486402,null,"-",137,229579414,{"$nulls":4},"COG3611","Replication initiation/membrane attachme"]
["conserved conjugative plasmid protein ","YG5714_1631",1486444,1486992,null,"+",182,229579415,null,null,"pfam04114","Gaa1-like, GPI transamidase component. G"]
["conserved conjugative plasmid protein ","YG5714_1632",1486957,1487256,null,"-",99,229579416,null,null,"cd01295","Adenine deaminase (AdeC) directly deamin","COG1001","Adenine deaminase [Nucleotide transport "]
["conserved conjugative plasmid membrane protein ","YG5714_1633",1487299,1487841,null,"+",180,229579417,null,null,"pfam06375,pfam09847","Bovine leukaemia virus receptor (BLVR).  ; Predicted permease (DUF2074). This domai"]
["conserved conjugative plasmid protein ","YG5714_1634",1487876,1488034,null,"-",52,229579418,null,null,"pfam07302","AroM protein. This family consists of se","COG2177","Cell division protein [Cell division and"]
["hypothetical protein YG5714_1635 ","YG5714_1635",1488174,1489070,null,"-",298,229579419]
["hypothetical protein YG5714_1636 ","YG5714_1636",1489045,1489755,null,"-",236,229579420,null,null,"pfam10275","Peptidase C65 Otubain. This family of pr","COG1486","Alpha-galactosidases/6-phospho-beta-gluc"]
[]
[]
[{"$nulls":5},162145849,"Bacteria,Proteobacteria,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter diazotrophicus,Gluconacetobacter diazotrophicus PAl 5"]
["COG1192,D,cobyrinic acid a,c-diamide synthase ","GDI_3857",3938188,3938841,null,"-",217,162149617,null,"COG1192","PHA02518","ParA-like protein; Provisional","COG1192","ATPases involved in chromosome partition"]
["COG3335,L,putative transposase ","GDI_3858",3938980,3939486,null,"-",168,162149618,null,"COG3335","pfam00665","Integrase core domain. Integrase mediate","COG3335","Transposase and inactivated derivatives "]
["COG3415,L,putative transposase ","GDI_3859",3939548,3939925,null,"-",125,162149619,null,"COG3415","pfam08822,pfam07592,pfam00292","Protein of unknown function (DUF1804). T ; Rhodopirellula transposase. These transp ; 'Paired box' domain. ","COG3415","Transposase and inactivated derivatives "]
["COG0582,L,hypothetical protein GDI_3860 ","GDI_3860",3940070,3940549,null,"-",159,162149620,null,null,"cd01182,pfam04625","DNA breaking-rejoining enzymes, intergra ; DEC-1 protein, N terminal region. The de","COG4974,COG5178","Site-specific recombinase XerD [DNA repl ; U5 snRNP spliceosome subunit [RNA proces"]
["hypothetical protein GDI_3861 ","GDI_3861",3940602,3941237,null,"-",211,162149621,null,null,"pfam01878,pfam01550","Protein of unknown function DUF55. This  ; Virion host shutoff protein. This family"]
["hypothetical protein GDI_3862 ","GDI_3862",3941249,3941482,null,"-",77,162149622]
["COG3293,L,putative transposase ","GDI_3863",3941742,3942539,null,"+",265,162149623,null,"COG3293","pfam01609","Transposase DDE domain. Transposase prot","COG3293,COG3293","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
["COG3666,L,putative transposase ","GDI_3864",3942613,3943956,null,"+",447,162149624,null,"COG3666","pfam01609,pfam04285,pfam02286","Transposase DDE domain. Transposase prot ; Protein of unknown function (DUF444). Ba ; Dehydratase large subunit. This family c","COG3666,COG4942","Transposase and inactivated derivatives  ; Membrane-bound metallopeptidase [Cell di"]
["COG1396,K,hypothetical protein GDI_0002 ","GDI_0002",608,832,null,"+",74,162145847,null,null,"cd00093","Helix-turn-helix XRE-family like protein","COG1396","Predicted transcriptional regulators [Tr"]
["hypothetical protein GDI_0003 ","GDI_0003",864,2780,null,"+",638,162145848,"RecB-like nuclease of Mrr subfamily fuzed to APAZ domain and TIR domain",null,"smart00255,cd01703","Toll - interleukin 1 - resistance; ","COG1537","Predicted RNA-binding proteins [General "]
["hypothetical protein GDI_0004 ","GDI_0004",2777,4333,null,"+",518,162145849,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
["COG3293,L,putative transposase ","GDI_0007",7082,7918,null,"-",278,162145850,null,"COG3293","pfam01609","Transposase DDE domain. Transposase prot","COG3293,COG3293","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
["COG3666,L,putative transposase ","GDI_0009",8862,9410,null,"+",182,162145851,null,null,"pfam01609","Transposase DDE domain. Transposase prot"]
["COG3293,L,putative transposase ","GDI_0010",9488,10324,null,"-",278,162145852,null,"COG3293","pfam01609","Transposase DDE domain. Transposase prot","COG3293,COG3293","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
["hypothetical protein GDI_0011 ","GDI_0011",10431,10589,null,"+",52,162145853]
["COG3293,L,putative transposase ","GDI_0012",10636,11433,null,"+",265,162145854,null,"COG3293","pfam01609","Transposase DDE domain. Transposase prot","COG3293,COG3293","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
["COG3039,L,putative transposase ","GDI_0013",11683,12762,null,"-",359,162145855,null,"COG3039","pfam01609,pfam05598","Transposase DDE domain. Transposase prot ; Sulfolobus solfataricus protein of unkno","COG3666","Transposase and inactivated derivatives "]
["COG3386,G,hypothetical protein GDI_0014 ","GDI_0014",13191,14342,null,"-",383,162145856,null,"COG3386","pfam03022","Major royal jelly protein. Royal jelly i","COG3386","Gluconolactonase [Carbohydrate transport"]
["COG0169,E,putative shikimate dehydrogenase ","GDI_0015",14515,15372,null,"+",285,162145857,null,"COG0169","pfam08501,pfam01488","Shikimate dehydrogenase substrate bindin ; Shikimate / quinate 5-dehydrogenase. Thi","COG0169","Shikimate 5-dehydrogenase [Amino acid tr"]
["COG0477,GEPR,putative sugar transporter protein ","GDI_0016",15489,16889,null,"+",466,162145858,null,"COG0477","pfam00083","Sugar (and other) transporter. ","COG2814","Arabinose efflux permease [Carbohydrate "]
["COG0061,G,putative inorganic polyphosphate/ATP-NAD kinase ","GDI_0017",16892,17695,null,"-",267,162145859,null,"COG0061","pfam01513","ATP-NAD kinase. Members of this family i","COG0061","NAD kinase [Coenzyme metabolism]"]
[]
[{"$nulls":5},223476486,"Archaea,Euryarchaeota,Thermococci,Thermococcales,Thermococcaceae,Thermococcus,Thermococcus barophilus,Thermococcus barophilus MP"]
["hypothetical protein","TERMP_1638",104736,104852,null,"-",null,223476590]
["hypothetical protein","TERMP_1423",105393,106007,null,"+",null,223476375]
["hypothetical protein","TERMP_1761",106058,106201,null,"+",null,223476713]
["[LO] COG1474 Cdc6-related protein, AAA superfamily","TERMP_1630",106299,107564,null,"+",null,223476582,null,null,"pfam09079,cd00009,cd05804","CDC6, C terminal. The C terminal domain  ; The AAA+ (ATPases Associated with a wide ; StaR_like; a well-conserved protein foun","COG1474","Cdc6-related protein, AAA superfamily AT"]
["[L] COG1311 Archaeal DNA polymerase II, small","TERMP_1832",107564,109597,null,"+",null,223476784,null,null,"cd04490,pfam00149","PolII_SU_OBF: A subfamily of OB folds co ; Calcineurin-like phosphoesterase. This f","COG1311","Archaeal DNA polymerase II, small subuni"]
["[L] COG1933 Archaeal DNA polymerase II, large","TERMP_1671",109594,114864,null,"+",null,223476623,null,null,"pfam03833,smart00306,smart00305","DNA polymerase II large subunit DP2. ","COG1933,COG1372,COG2888,COG0161","Archaeal DNA polymerase II, large subuni ; Intein/homing endonuclease [DNA replicat ; Predicted Zn-ribbon RNA-binding protein  ; Adenosylmethionine-8-amino-7-oxononanoat"]
["[K] COG5665 CCR4-NOT transcriptional regulation","TERMP_1714",114904,115587,null,"+",null,223476666]
["hypothetical protein","TERMP_1694",115671,115940,null,"-",null,223476646]
["[S] COG2253 Uncharacterized conserved protein","TERMP_1290",116080,117096,null,"-",null,223476242,null,null,"pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
["hypothetical protein","TERMP_1530",117839,118606,null,"-",null,223476482,null,null,"pfam04961","Formiminotransferase-cyclodeaminase. Mem","COG1283","Na+/phosphate symporter [Inorganic ion t"]
["[J] COG1431 Uncharacterized protein containing","TERMP_1534",119260,121764,null,"-",null,223476486,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["hypothetical protein","TERMP_1072",122000,123256,null,"+",null,223476024,null,null,"cd00397","DNA breaking-rejoining enzymes, C-termin","COG4974","Site-specific recombinase XerD [DNA repl"]
["hypothetical protein","TERMP_1420",123353,123676,null,"+",null,223476372]
["[L] COG0419 ATPase involved in DNA repair;","TERMP_1189",123757,126375,null,"-",null,223476141,null,null,"pfam02463,pfam02463","RecF/RecN/SMC N terminal domain. This do ; RecF/RecN/SMC N terminal domain. This do","COG0419","ATPase involved in DNA repair [DNA repli"]
["[L] COG0420 DNA repair exonuclease","TERMP_1531",126372,127514,null,"-",null,223476483,null,null,"pfam00149","Calcineurin-like phosphoesterase. This f","COG0420","DNA repair exonuclease [DNA replication,"]
["hypothetical protein","TERMP_1816",127518,128150,null,"-",null,223476768,null,null,"pfam05478","Prominin. The prominins are an emerging ","COG1331","Highly conserved protein containing a th"]
["[R] COG0433 Predicted ATPase","TERMP_1154",128182,129780,null,"-",null,223476106,null,null,"pfam01935,pfam05707,pfam09378","Domain of unknown function DUF87. The fu ; Zonular occludens toxin (Zot). This fami ; HAS barrel domain. The HAS barrel is nam","COG0433","HerA helicase [Replication, recombinatio"]
["[S] COG1630 Uncharacterized protein conserved in","TERMP_1136",129746,131056,null,"-",null,223476088,null,null,"pfam09376","NurA domain. This family includes NurA a","COG0464","ATPases of the AAA+ class [Posttranslati"]
["[S] COG1673 Uncharacterized protein conserved in","TERMP_1865",131181,131612,null,"-",null,223476817,null,null,"pfam01878","Protein of unknown function DUF55. This ","COG1673","Uncharacterized protein conserved in arc"]
["[K] COG2101 TATA-box binding protein (TBP),","TERMP_1497",131707,132231,null,"+",null,223476449,null,null,"cd04518","archaeal TATA box binding protein (TBP):","COG2101","TATA-box binding protein (TBP), componen"]
[]
[{"$nulls":5},223489681,"Bacteria,Firmicutes,Clostridia,Thermoanaerobacterales,Thermoanaerobacteraceae,Carboxydibrachium,Carboxydibrachium pacificum,Carboxydibrachium pacificum DSM 12653"]
["[D] COG5279 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain ","CDSM653_373",27919,28833,null,"+",null,223489665,null,null,"pfam01841","Transglutaminase-like superfamily. This ","COG5279","Uncharacterized protein involved in cyto"]
["[O] COG4826 Serine protease inhibitor ","CDSM653_362",28856,30127,null,"-",null,223489654,null,null,"cd02049","SERine Proteinase INhibitors (serpins), ","COG4826","Serine protease inhibitor [Posttranslati"]
["[K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit ","CDSM653_386",30867,31826,null,"-",null,223489677,null,null,"cd00777","Asp tRNA synthetase (aspRS) class II cor","COG1048,COG1154","Aconitase A [Energy production and conve ; Deoxyxylulose-5-phosphate synthase [Coen"]
["[C] COG0778 Nitroreductase ","CDSM653_384",32551,33171,null,"+",null,223489675,null,null,"cd02137","Nitroreductase-like family 1. A subfamil","COG0778","Nitroreductase [Energy production and co"]
["[R] COG0730 Predicted permeases ","CDSM653_374",33171,33926,null,"+",null,223489666,null,null,"pfam01925","Domain of unknown function DUF81. This i","COG0730","Predicted permeases [General function pr"]
["[E] COG0747 ABC-type dipeptide transport system, periplasmic component ","CDSM653_377",34169,35812,null,"-",null,223489668,null,null,"pfam00496","Bacterial extracellular solute-binding p","COG4166","ABC-type oligopeptide transport system, "]
["[E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases ","CDSM653_387",36003,37901,null,"+",null,223489678,null,null,"pfam00326,pfam00930","Prolyl oligopeptidase family. ","COG1506","Dipeptidyl aminopeptidases/acylaminoacyl"]
["[R] COG4889 Predicted helicase ","CDSM653_372",37963,40635,null,"+",null,223489664,null,null,"pfam08463,pfam04851,pfam04313,pfam00271,pfam09430,CHL00001","EcoEI R protein C-terminal. The restrict ; Type III restriction enzyme, res subunit ; Type I restriction enzyme R protein N te ; Helicase conserved C-terminal domain. Th ; Protein of unknown function (DUF2012). T ; RNA polymerase beta subunit","COG4096","Type I site-specific restriction-modific"]
["[V] COG0286 Type I restriction-modification system methyltransferase subunit ","CDSM653_383",40698,42128,null,"+",null,223489674,null,null,"pfam02384","N-6 DNA Methylase. Restriction-modificat","COG0286","Type I restriction-modification system m"]
["hypothetical protein ","CDSM653_369",42190,42921,null,"+",null,223489661,"hypothetical protein "]
["[J] COG1431 Uncharacterized protein containing piwi/argonaute domain ","CDSM653_390",42924,44222,null,"+",null,223489681,"PIWI domain containing protein",null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
["[K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit ","CDSM653_360",44210,45364,null,"+",null,223489652,null,null,"pfam09509","Protein of unknown function (Hypoth_ymh)"]
["[V] COG0732 Restriction endonuclease S subunits ","CDSM653_366",45459,46619,null,"+",null,223489658,null,null,"pfam01420,pfam01420","Type I restriction modification DNA spec ; Type I restriction modification DNA spec","COG0732","Restriction endonuclease S subunits [Def"]
["[J] COG1670 Acetyltransferases, including","CDSM653_361",47819,48382,null,"+",null,223489653,null,null,"pfam00583","Acetyltransferase (GNAT) family. This fa","COG1670","Acetyltransferases, including N-acetylas"]
["[J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins ","CDSM653_351",48867,49424,null,"+",null,223489643,null,null,"pfam00583","Acetyltransferase (GNAT) family. This fa","COG1670","Acetyltransferases, including N-acetylas"]
["[J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases ","CDSM653_380",49959,50888,null,"+",null,223489671,null,null,"cd02869,cd00165","PseudoU_synth_RsuA/RluD: Pseudouridine s ; S4/Hsp/ tRNA synthetase RNA-binding doma","COG0564","Pseudouridylate synthases, 23S RNA-speci"]
["[F] COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain ","CDSM653_368",50885,51931,null,"-",null,223489660,null,null,"cd06061","AIR synthase (PurM) related protein, sub","COG0309","Hydrogenase maturation factor [Posttrans"]

{"sheet":"piwi_close","index":1,"n_rows":376,"n_cols":13,"rows_kept":376,"flags":["formulas_cached_only"]}
[null,"#",225872323,"Acidobacterium_capsulatum_ATCC_51196","/am/ftp-genomes/Bacteria/Acidobacterium_capsulatum_ATCC_51196/NC_012483.ptt"]
[null,"742383..743783","+",466,225872322,"ACP_0654","hypothetical protein",14,"TIR","smart00255","Toll - interleukin 1 - resistance; "]
[null,"743783..745336","+",517,225872323,"ACP_0655","PIWI domain",15,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"747608..748033","+",141,225872324,"ACP_0658","hypothetical protein",16]
[null,"#",225874783,"Acidobacterium_capsulatum_ATCC_51196","/am/ftp-genomes/Bacteria/Acidobacterium_capsulatum_ATCC_51196/NC_012483.ptt",null,null,4]
[null,"3754841..3757594","+",917,225874782,"ACP_3239","conjugative relaxase domain protein",36,null,"pfam08751,pfam02562","TrwC relaxase. Relaxases are DNA strand  ; PhoH-like protein. PhoH is a cytoplasmic","COG0507,COG0507,COG2989","ATP-dependent exoDNAse (exonuclease V),  ; ATP-dependent exoDNAse (exonuclease V),  ; Uncharacterized protein conserved in bac"]
[null,"3757735..3760005","+",756,225874783,"ACP_3240","PIWI domain protein",37,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"3760002..3761207","+",401,225874784,"ACP_3241","hypothetical protein",38,"new_RecB2","cd01037,pfam00342","Superfamily of nucleases including Short ; Phosphoglucose isomerase. Phosphoglucose"]
[null,"#",212639457,"Anoxybacillus_flavithermus_WK1","/am/ftp-genomes/Bacteria/Anoxybacillus_flavithermus_WK1/NC_011567.ptt",null,null,48]
[null,"1617445..1618059","-",204,212639456,"Aflv_1626","NUDIX family hydrolase",58,"NUDIX ","cd04676","Members of the Nudix hydrolase superfami","COG1051","ADP-ribose pyrophosphatase [Nucleotide t"]
[null,"1618069..1620192","-",707,212639457,"Aflv_1627","PIWI domain",59,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1620256..1620951","-",231,212639458,"Aflv_1628","hypothetical protein",60]
[null,"#",15606619,"Aquifex_aeolicus","/am/ftp-genomes/Bacteria/Aquifex_aeolicus/NC_000918.ptt",null,null,70]
[null,"1031810..1032367","-",185,15606618,"aq_1446","hypothetical protein",80,null,"pfam00509,pfam00509,pfam07672","Hemagglutinin. Hemagglutinin from influe ; Hemagglutinin. Hemagglutinin from influe ; Mycoplasma MFS transporter. These protei","COG1269","Archaeal/vacuolar-type H+-ATPase subunit"]
[null,"1032379..1034499","-",706,15606619,"aq_1447","PIWI domain",81,null,"cd04659,pfam04902","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Conserved region in Nab1. Nab1 and Nab2 ","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1034504..1034923","-",139,15606620,"aq_1449","8-oxo-dGTPase domain-containing protein",82,"NUDIX ","cd04676","Members of the Nudix hydrolase superfami","COG1051","ADP-ribose pyrophosphatase [Nucleotide t"]
[null,"#",11498916,"Archaeoglobus_fulgidus","/am/ftp-genomes/Bacteria/Archaeoglobus_fulgidus/NC_000917.ptt",null,null,92]
[null,"1175333..1176355","-",340,11498915,"AF1317","???",102]
[null,"1176343..1177626","-",427,11498916,"AF1318","PIWI domain",103,null,"cd02826","Piwi-like: PIWI domain. Domain found in ","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1178538..1179122","+",194,11498917,"AF1319","hypothetical protein",104]
[null,"#",56478414,"Aromatoleum_aromaticum_EbN1","/am/ftp-genomes/Bacteria/Aromatoleum_aromaticum_EbN1/NC_006513.ptt",null,null,114]
[null,"3108603..3108740","+",45,56478413,"ebA5243","hypothetical protein",124]
[null,"3108846..3111029","+",727,56478414,"ebA5244","PIWI domain",125,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG1924","Argonaute homolog, implicated in RNA met ; Activator of 2-hydroxyglutaryl-CoA dehyd"]
[null,"3111063..3113681","+",872,56478415,"ebA5249","PglZ domain",126,null,"pfam08665","PglZ domain. Alkaline phosphatase clan","COG1461","Predicted kinase related to dihydroxyace"]
[null,"#",182676905,"Beijerinckia_indica_ATCC_9039","/am/ftp-genomes/Bacteria/Beijerinckia_indica_ATCC_9039/NC_010580.ptt",null,null,136]
[null,"70588..70944","+",118,182676904,"Bind_3760","hypothetical protein",146]
[null,"71869..73326","-",485,182676905,"Bind_3762","PIWI domain",147,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3321","Polyketide synthase modules and related "]
[null,"73316..74650","-",444,182676906,"Bind_3763","hypothetical protein",148,"new_RecB","cd06114","Escherichia coli (Ec) citrate synthase ("]
[null,"#",146337912,"Bradyrhizobium_ORS278","/am/ftp-genomes/Bacteria/Bradyrhizobium_ORS278/NC_009445.ptt",null,null,158]
[null,"842357..844099","+",580,146337911,"BRADO0799","hypothetical protein",168,"Sir2","cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846,COG2135","NAD-dependent protein deacetylases, SIR2 ; Uncharacterized conserved protein [Funct"]
[null,"844096..845514","+",472,146337912,"BRADO0800","PIWI domain",169,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"845774..846985","-",403,146337913,"BRADO0801","hypothetical protein",170,{"$nulls":3},"COG1410","Methionine synthase I, cobalamin-binding"]
[null,"#",91783256,"Burkholderia_xenovorans_LB400","/am/ftp-genomes/Bacteria/Burkholderia_xenovorans_LB400/NC_007951.ptt",null,null,180]
[null,"2092042..2093670","+",542,91783255,"Bxe_A2570","hypothetical protein",190,null,"cd05155","Uncharacterized bacterial proteins with "]
[null,"2093873..2097064","-",1063,91783256,"Bxe_A2569","PIWI domain",191,"Sir2 fusion","cd04659,cd00296","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","COG0846","NAD-dependent protein deacetylases, SIR2"]
[null,"2097539..2097829","+",96,91783257,"Bxe_A2568","hypothetical protein",192]
[null,"#",192359261,"Cellvibrio_japonicus_Ueda107","/am/ftp-genomes/Bacteria/Cellvibrio_japonicus_Ueda107/NC_010995.ptt",null,null,202]
[null,"767378..768529","+",383,192360303,"CJA_0634","ISCja2, transposase",212,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3385","FOG: Transposase and inactivated derivat"]
[null,"768417..769673","-",418,192359261,"CJA_0633","Piwi domain protein",213,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"769670..771541","-",623,192360229,"CJA_0635","hypothetical protein",214,"Sir2","cd00296,cd06417,PHA02090","SIR2 superfamily of proteins includes si ; LysA is a cell wall endolysin produced b ; hypothetical protein","COG2610","H+/gluconate symporter and related perme"]
[null,"#",189499316,"Chlorobium_phaeobacteroides_BS1","/am/ftp-genomes/Bacteria/Chlorobium_phaeobacteroides_BS1/NC_010831.ptt",null,null,224]
[null,"340213..341988","+",591,189499315,"Cphamn1_0335","hypothetical protein",234,"Sir2","cd00296","SIR2 superfamily of proteins includes si","COG0846,COG4239","NAD-dependent protein deacetylases, SIR2 ; ABC-type uncharacterized transport syste"]
[null,"341981..343405","+",474,189499316,"Cphamn1_0336","Piwi domain protein",235,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"343420..347457","+",1345,189499317,"Cphamn1_0337","type I site-specific deoxyribonuclease, HsdR family",236,null,"pfam04851,pfam07605,pfam04313,pfam10228","Type III restriction enzyme, res subunit ; Protein of unknown function (DUF1568). T ; Type I restriction enzyme R protein N te ; Uncharacterised conserved protein (DUF22","COG0610,COG0610,COG1943,COG3321","Type I site-specific restriction-modific ; Type I site-specific restriction-modific ; Transposase and inactivated derivatives  ; Polyketide synthase modules and related "]
[null,"#",86606806,"Cyanobacteria_bacterium_Yellowstone_A-Prime","/am/ftp-genomes/Bacteria/Cyanobacteria_bacterium_Yellowstone_A-Prime/NC_007775.ptt",null,null,246]
[null,"2177602..2177802","-",66,86606805,"CYA_2165","RHH?",256]
[null,"2177856..2180051","-",731,86606806,"CYA_2166","piwi domain-containing protein",257,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"2180122..2180589","-",155,86606807,"CYA_2167","hypothetical protein",258,null,"pfam05473","UL45 protein. This family consists sever"]
[null,"#",86610170,"Cyanobacteria_bacterium_Yellowstone_B-Prime","/am/ftp-genomes/Bacteria/Cyanobacteria_bacterium_Yellowstone_B-Prime/NC_007776.ptt",null,null,268]
[null,"2837761..2837976","-",71,86610169,"CYB_2742","hypothetical protein",278]
[null,"2838369..2840609","+",746,86610170,"CYB_2744","piwi domain-containing protein",279,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"2840674..2840868","+",64,86610171,"CYB_2745","RHH?",280]
[null,"#",218248696,"Cyanothece_PCC_8801","/am/ftp-genomes/Bacteria/Cyanothece_PCC_8801/NC_011726.ptt",null,null,290]
[null,"4155540..4156967","-",475,218248695,"PCC8801_3969","isocitrate dehydrogenase",300,null,"pfam00180,pfam00180,pfam03740","Isocitrate/isopropylmalate dehydrogenase ; Isocitrate/isopropylmalate dehydrogenase ; Pyridoxal phosphate biosynthesis protein","COG0538","Isocitrate dehydrogenases [Energy produc"]
[null,"4157273..4159567","+",764,218248696,"PCC8801_3970","stem cell self-renewal protein Piwi domain protein",301,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"4159564..4160913","+",449,218248697,"PCC8801_3971","hypothetical protein",302,"new_RecB2",null,null,"COG3118","Thioredoxin domain-containing protein [P"]
[null,"#",110639330,"Cytophaga_hutchinsonii_ATCC_33406","/am/ftp-genomes/Bacteria/Cytophaga_hutchinsonii_ATCC_33406/NC_008255.ptt",null,null,312]
[null,"3379035..3379442","-",135,110639329,"CHU_2954","hypothetical protein",322]
[null,"3379892..3381943","+",683,110639330,"CHU_2955","PIWI domain",323,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"3381945..3382997","+",350,110639331,"CHU_2956","hypothetical protein",324,"new_RecB2",null,null,"COG4229","Predicted enolase-phosphatase [Energy pr"]
[null,"#",73748042,"Dehalococcoides_CBDB1","/am/ftp-genomes/Bacteria/Dehalococcoides_CBDB1/NC_007356.ptt",null,null,334]
[null,"85610..86506","+",298,73748041,"cbdb_A101","CRISPR-associated protein Cas4 (RecB family exonuclease) ",344,"COG1468","COG1468"]
[null,"86503..88887","+",794,73748042,"cbdb_A102","PIWI domain",345,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG0426","Uncharacterized flavoproteins [Energy pr"]
[null,"89251..90405","+",384,73748043,"cbdb_A103","hypothetical protein",346]
[null,"#",222110533,"Diaphorobacter_TPSY","/am/ftp-genomes/Bacteria/Diaphorobacter_TPSY/NC_011992.ptt",null,null,356]
[null,"1390026..1391231","+",401,222110532,"Dtpsy_1331","COG2856,COG1396",366,null,"pfam06114,cd00093","Domain of unknown function (DUF955). Fam ; Helix-turn-helix XRE-family like protein","COG2856,COG1396","Predicted Zn peptidase [Amino acid trans ; Predicted transcriptional regulators [Tr"]
[null,"1391462..1393717","+",751,222110533,"Dtpsy_1332","stem cell self-renewal protein Piwi domain protein",367,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG0389","Argonaute homolog, implicated in RNA met ; Nucleotidyltransferase/DNA polymerase in"]
[null,"1393732..1394928","+",398,222110534,"Dtpsy_1333","hypothetical protein",368,"new_RecB2"]
[null,"#",39996463,"Geobacter_sulfurreducens","/am/ftp-genomes/Bacteria/Geobacter_sulfurreducens/NC_002939.ptt",null,null,378]
[null,"1487423..1489186","+",587,39996462,"GSU1360","hypothetical protein",388,"Sir2","cd01406,pfam02399","Sir2-like: Prokaryotic group of uncharac ; Origin of replication binding protein. T","COG0846","NAD-dependent protein deacetylases, SIR2"]
[null,"1489176..1490597","+",473,39996463,"GSU1361","piwi domain-containing protein",389,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"1490654..1491835","+",393,39996464,"GSU1362","??? Interesting",390]
[null,"#",148266051,"Geobacter_uraniumreducens_Rf4","/am/ftp-genomes/Bacteria/Geobacter_uraniumreducens_Rf4/NC_009483.ptt",null,null,400]
[null,"4695504..4696574","-",356,148266050,"Gura_4039","helix-turn-helix domain-containing protein",410,null,"pfam06114,cd00093","Domain of unknown function (DUF955). Fam ; Helix-turn-helix XRE-family like protein","COG2856,COG1396","Predicted Zn peptidase [Amino acid trans ; Predicted transcriptional regulators [Tr"]
[null,"4696924..4698345","-",473,148266051,"Gura_4040","PIWI domain",411,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"4698342..4700081","-",579,148266052,"Gura_4041","hypothetical protein",412,"Sir2","cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846","NAD-dependent protein deacetylases, SIR2"]
[null,"#",55376414,"Haloarcula_marismortui_ATCC_43049","/am/ftp-genomes/Bacteria/Haloarcula_marismortui_ATCC_43049/NC_006394.ptt",null,null,422]
[null,"158..721","+",187,55376413,"pNG6001","hypothetical protein",432,{"$nulls":3},"COG3017","Outer membrane lipoprotein involved in o"]
[null,"739..2157","-",472,55376414,"pNG6002","PIWI domain",433,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"2154..3497","-",447,55376415,"pNG6003","hypothetical protein",434,"new_RecB","pfam06160","Septation ring formation regulator, EzrA"]
[null,"#",222475719,"Halorubrum_lacusprofundi_ATCC_49239","/am/ftp-genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012028.ptt",null,null,444]
[null,"39202..40272","+",356,222475718,"Hlac_2784","??? Interesting",454]
[null,"40738..42894","+",718,222475719,"Hlac_2785","stem cell self-renewal protein Piwi domain protein",455,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"42942..44279","+",445,222475720,"Hlac_2786","transposase (ISH6)",456,null,"pfam00872","Transposase, Mutator family. "]
[null,"#",222476126,"Halorubrum_lacusprofundi_ATCC_49239","/am/ftp-genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012028.ptt",null,null,444]
[null,"486230..488818","-",862,222476125,"Hlac_3229","hypothetical protein",476,{"$nulls":3},"COG0748","Putative heme iron utilization protein ["]
[null,"489068..491263","+",731,222476126,"Hlac_3230","stem cell self-renewal protein Piwi domain protein",477,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"491244..492191","-",315,222476127,"Hlac_3231","hypothetical protein",478,{"$nulls":3},"COG2856","Predicted Zn peptidase [Amino acid trans"]
[null,"#",222481225,"Halorubrum_lacusprofundi_ATCC_49239","/am/ftp-genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012030.ptt",null,null,488]
[null,"95180..95410","-",76,222481224,"Hlac_3342","hypothetical protein",498]
[null,"95898..97322","+",474,222481225,"Hlac_3344","PIWI domain",499,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"97421..99925","+",834,222481226,"Hlac_3345","COG1483, AAA family ATPase",500,null,"pfam04465,PHA00370","Protein of unknown function (DUF499). Fa ; attachment protein","COG1483,COG5000","Predicted ATPase (AAA+ superfamily) [Gen ; Signal transduction histidine kinase inv"]
[null,"#",13475183,"Mesorhizobium_loti","/am/ftp-genomes/Bacteria/Mesorhizobium_loti/NC_002678.ptt",null,null,510]
[null,"5020023..5021447","+",474,13475182,"mlr6203","hypothetical protein",520,"new_RecB"]
[null,"5021381..5022898","+",505,13475183,"mlr6204","PIWI domain",521,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG5077","Ubiquitin carboxyl-terminal hydrolase [P"]
[null,"5023438..5023656","-",72,13475184,"msl6205","5-methyltetrahydrofolate-homocysteine S-methyltransferase",522,null,"pfam02965","Vitamin B12 dependent methionine synthas","COG1410","Methionine synthase I, cobalamin-binding"]
[null,"#",15669511,"Methanococcus_jannaschii","/am/ftp-genomes/Bacteria/Methanococcus_jannaschii/NC_000909.ptt",null,null,532]
[null,"1267794..1268189","-",131,15669510,"MJ1320","PIN",542,"PIN","smart00670","Large family of predicted nucleotide-bin","COG1412","Uncharacterized proteins of PilT N-term."]
[null,"1268210..1270351","-",713,15669511,"MJ1321","PIWI domain",543,null,"pfam02171,cd01462","Piwi domain. This domain is found in the ; VWA YIEM type: Von Willebrand factor typ","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1270370..1273387","-",1005,15669512,"MJ1322","ATPase involved in DNA repair ",544,null,"pfam02463,cd03240","RecF/RecN/SMC N terminal domain. This do ; The catalytic domains of Rad50 are simil","COG0419","ATPase involved in DNA repair [DNA repli"]
[null,"#",20094747,"Methanopyrus_kandleri","/am/ftp-genomes/Bacteria/Methanopyrus_kandleri/NC_003551.ptt",null,null,554]
[null,"1324335..1324640","-",101,20094746,"MK1310","CRISPR-associated protein Cas2",564,null,"pfam02647","Uncharacterized ACR, COG1343. ","COG1343","CRISPR-associated protein Cas2 [Defense "]
[null,"1324652..1326787","-",711,20094747,"MK1311","the argonaute protein, implicated in translation or RNA processing",565,null,"cd04659,CHL00180","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; LysR transcriptional regulator; Provisio","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1326771..1327766","-",331,20094748,"MK1312","CRISPR-associated protein Cas1",566,null,"pfam01867","Protein of unknown function DUF48. This ","COG1518","CRISPR-associated protein Cas1 [Defense "]
[null,"#",20089856,"Methanosarcina_acetivorans","/am/ftp-genomes/Bacteria/Methanosarcina_acetivorans/NC_003552.ptt",null,null,576]
[null,"1168352..1169227","+",291,20089855,"MA0978","coenzyme F420-reducing hydrogenase subunit beta",586,null,"pfam04432,pfam04422","Coenzyme F420 hydrogenase/dehydrogenase, ; Coenzyme F420 hydrogenase/dehydrogenase,","COG1035","Coenzyme F420-reducing hydrogenase, beta"]
[null,"1169485..1170885","-",466,20089856,"MA0979","PIWI domain",587,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG3972","Argonaute homolog, implicated in RNA met ; Superfamily I DNA and RNA helicases [Gen"]
[null,"1170887..1172284","-",465,20089857,"MA0980","hypothetical protein",588,"new_RecB"]
[null,"#",124262648,"Methylibium_petroleiphilum_PM1","/am/ftp-genomes/Bacteria/Methylibium_petroleiphilum_PM1/NC_008826.ptt",null,null,598]
[null,"94925..96310","+",461,124262647,"Mpe_B0103","hypothetical protein",608,"new_RecB"]
[null,"96307..97728","+",473,124262648,"Mpe_B0104","PIWI domain",609,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"97795..98226","-",143,124262649,"Mpe_B0105","hypothetical protein",610]
[null,"#",166364682,"Microcystis_aeruginosa_NIES_843","/am/ftp-genomes/Bacteria/Microcystis_aeruginosa_NIES_843/NC_010296.ptt",null,null,620]
[null,"1736118..1736948","+",276,166364681,"MAE_19400","RecB-like and Zn-finger",630,"COG1468"]
[null,"1736952..1739195","+",747,166364682,"MAE_19410","PIWI domain",631,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1739301..1739465","-",54,166364683,"MAE_19420","hypothetical protein",632]
[null,"#",119855142,"Mycobacterium_KMS","/am/ftp-genomes/Bacteria/Mycobacterium_KMS/NC_008703.ptt",null,null,642]
[null,"264565..265800","-",411,119855141,"Mkms_5755","transposase, mutator type",652,null,"pfam00872","Transposase, Mutator family. ","COG3328","Transposase and inactivated derivatives "]
[null,"266535..267968","-",477,119855142,"Mkms_5756","PIWI domain",653,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3448","CBS-domain-containing membrane protein ["]
[null,"267965..269275","-",436,119855143,"Mkms_5757","hypothetical protein",654,"new_RecB"]
[null,"#",147677058,"Pelotomaculum_thermopropionicum_SI","/am/ftp-genomes/Bacteria/Pelotomaculum_thermopropionicum_SI/NC_009454.ptt",null,null,664]
[null,"723198..724472","-",424,147677057,"PTH_0722","hypothetical protein",674,"new_RecB2","cd01135","V/A-type ATP synthase (non-catalytic) su","COG4880","Secreted protein containing C-terminal b"]
[null,"724418..726751","-",777,147677058,"PTH_0723","PIWI domain",675,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"727629..727964","-",111,147677059,"PTH_0724","PIN",676,"PIN","smart00670","Large family of predicted nucleotide-bin","COG4956","Integral membrane protein (PIN domain su"]
[null,"#",146283523,"Pseudomonas_stutzeri_A1501","/am/ftp-genomes/Bacteria/Pseudomonas_stutzeri_A1501/NC_009434.ptt",null,null,686]
[null,"3449330..3451201","+",623,146283522,"PST_3197","hypothetical protein",696,"Sir2","cd01406","Sir2-like: Prokaryotic group of uncharac"]
[null,"3451198..3452655","+",485,146283523,"PST_3198","piwi domain-containing protein",697,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"3452660..3453523","-",287,146283524,"PST_3199","integrase",698,null,"cd00798","XerD and XerC integrases, DNA breaking-r","COG4973","Site-specific recombinase XerC [DNA repl"]
[null,"#",18976909,"Pyrococcus_furiosus","/am/ftp-genomes/Bacteria/Pyrococcus_furiosus/NC_003413.ptt",null,null,708]
[null,"552553..553254","-",233,18976908,"PF0536","transposase",718,null,"pfam00665","Integrase core domain. Integrase mediate","COG3316","Transposase and inactivated derivatives "]
[null,"553680..555992","-",770,18976909,"PF0537","PIWI domain",719,null,"cd02826,cd02825","Piwi-like: PIWI domain. Domain found in  ; PAZ domain, named PAZ after the proteins","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"556872..558308","-",478,18976910,"PF0538","hypothetical protein",720,null,"pfam07882,smart00044","L-fucose isomerase, second N-terminal do ; Adenylyl- / guanylyl cyclase, catalytic "]
[null,"#",94311099,"Ralstonia_metallidurans_CH34","/am/ftp-genomes/Bacteria/Ralstonia_metallidurans_CH34/NC_007973.ptt",null,null,730]
[null,"2359623..2360255","+",210,94311098,"Rmet_2160","hypothetical protein",740,null,"pfam03047","COMC family. This family consists exclus"]
[null,"2360306..2361757","-",483,94311099,"Rmet_2161","PIWI domain",741,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"2361754..2363073","-",439,94311100,"Rmet_2162","hypothetical protein",742,"new_RecB"]
[null,"#",16519675,"Rhizobium_NGR234","/am/ftp-genomes/Bacteria/Rhizobium_NGR234/NC_000914.ptt",null,null,752]
[null,"42226..42522","-",98,16519674,"NGR234_037","Y4cB",762]
[null,"42556..44109","-",517,16519675,"NGR234_038","PIWI domain",763,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3696","Putative silver efflux pump [Inorganic i"]
[null,"44106..46028","-",640,16519676,"NGR234_039","Y4cD",764,"Mrr(recB) fused to TIR and new_RecB","smart00255","Toll - interleukin 1 - resistance; "]
[null,"#",190893999,"Rhizobium_etli_CIAT_652","/am/ftp-genomes/Bacteria/Rhizobium_etli_CIAT_652/NC_010996.ptt",null,null,774]
[null,"20532..21563","+",343,190893998,"RHECIAT_PB0000017","hypothetical protein",784]
[null,"21808..23316","-",502,190893999,"RHECIAT_PB0000018","PIWI domain",785,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"23321..24733","-",470,190894000,"RHECIAT_PB0000019","hypothetical protein",786,"TIR","pfam10446","Protein of unknown function (DUF2457). T","COG3420","Nitrous oxidase accessory protein [Inorg"]
[null,"#",146279708,"Rhodobacter_sphaeroides_ATCC_17025","/am/ftp-genomes/Bacteria/Rhodobacter_sphaeroides_ATCC_17025/NC_009429.ptt",null,null,796]
[null,"588506..589849","+",447,146279707,"Rsph17025_3693","hypothetical protein",806,null,"pfam01051,pfam01039","Initiator Replication protein. This prot ; Carboxyl transferase domain. All of the ","COG5527,COG3482,COG1747","Protein involved in initiation of plasmi ; Uncharacterized conserved protein [Funct ; Uncharacterized N-terminal domain of the"]
[null,"596174..598507","+",777,146279708,"Rsph17025_3694","PIWI domain",807,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG4449,COG3321","Predicted protease of the Abi (CAAX) fam ; Polyketide synthase modules and related "]
[null,"598504..599508","+",334,146279709,"Rsph17025_3695","transposase, IS4 family protein",808,"new_RecB2","CHL00095","Clp protease ATP binding subunit","COG3475","LPS biosynthesis protein [Cell envelope "]
[null,"#",91978096,"Rhodopseudomonas_palustris_BisB5","/am/ftp-genomes/Bacteria/Rhodopseudomonas_palustris_BisB5/NC_007958.ptt",null,null,818]
[null,"4049364..4052885","+",1173,91978095,"RPD_3630","DEAD/DEAH box helicase-like",828,null,"pfam00270,smart00490","DEAD/DEAH box helicase. Members of this  ; helicase superfamily c-terminal domain; ","COG1204","Superfamily II helicase [General functio"]
[null,"4052958..4054481","-",507,91978096,"RPD_3631","PIWI domain",829,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"4054478..4055923","-",481,91978097,"RPD_3632","hypothetical protein",830,"TIR","smart00255","Toll - interleukin 1 - resistance; "]
[null,"#",117922288,"Shewanella_ANA-3","/am/ftp-genomes/Bacteria/Shewanella_ANA-3/NC_008577.ptt",null,null,840]
[null,"4630350..4631582","-",410,117922287,"Shewana3_3855","hypothetical protein",850]
[null,"4631838..4633280","-",480,117922288,"Shewana3_3856","PIWI domain",851,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"4633270..4634691","-",473,117922289,"Shewana3_3857","hypothetical protein",852,"new_RecB"]
[null,"#",150378394,"Sinorhizobium_medicae_WSM419","/am/ftp-genomes/Bacteria/Sinorhizobium_medicae_WSM419/NC_009622.ptt",null,null,862]
[null,"193025..194950","+",641,150378393,"Smed_6503","TIR protein",872,"Mrr(recB) fused to TIR and new_RecB","smart00255","Toll - interleukin 1 - resistance; "]
[null,"194947..196500","+",517,150378394,"Smed_6504","PIWI domain",873,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3696","Putative silver efflux pump [Inorganic i"]
[null,"196491..196787","-",98,150378395,"Smed_6505","hypothetical protein",874]
[null,"#",148553128,"Sphingomonas_wittichii_RW1","/am/ftp-genomes/Bacteria/Sphingomonas_wittichii_RW1/NC_009511.ptt",null,null,884]
[null,"201457..202764","+",435,148553127,"Swit_0200","hypothetical protein",894,"TIR","CHL00179","Ycf2; Provisional","COG0040","ATP phosphoribosyltransferase [Amino aci"]
[null,"202761..204317","+",518,148553128,"Swit_0201","PIWI domain",895,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"204785..205171","-",128,148553129,"Swit_0202","hypothetical protein",896]
[null,"#",194365751,"Stenotrophomonas_maltophilia_R551_3","/am/ftp-genomes/Bacteria/Stenotrophomonas_maltophilia_R551_3/NC_011071.ptt",null,null,906]
[null,"2214814..2216661","+",615,194365750,"Smal_1973","hypothetical protein",916,"TIR"]
[null,"2216658..2218235","+",525,194365751,"Smal_1974","PIWI domain",917,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"2218340..2219203","-",287,194365752,"Smal_1975","hypothetical protein",918]
[null,"#",21225132,"Streptomyces_coelicolor","/am/ftp-genomes/Bacteria/Streptomyces_coelicolor/NC_003888.ptt",null,null,928]
[null,"7609452..7610765","-",437,21225131,"SCO6839","hypothetical protein",938,"new_RecB2","smart00475","5'-3' exonuclease; ","COG0498","Threonine synthase [Amino acid transport"]
[null,"7610762..7612807","-",681,21225132,"SCO6840","PIWI domain",939,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"7613335..7614387","+",350,21225133,"SCO6841","hypothetical protein",940,null,"pfam01939","Protein of unknown function DUF91. The f","COG3586,COG1637","Uncharacterized conserved protein [Funct ; Predicted nuclease of the RecB family [D"]
[null,"#",15922263,"Sulfolobus_tokodaii","/am/ftp-genomes/Bacteria/Sulfolobus_tokodaii/NC_003106.ptt",null,null,950]
[null,"1952579..1953592","+",337,15922262,"ST1945","???",960]
[null,"1953593..1954990","+",465,15922263,"ST1946","PIWI domain",961,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1105","Fructose-1-phosphate kinase and related "]
[null,"1954995..1955969","-",324,15922264,"ST1947","hypothetical protein",962,null,"pfam02463,pfam08450","RecF/RecN/SMC N terminal domain. This do ; SMP-30/Gluconolaconase/LRE-like region. ","COG3883","Uncharacterized protein conserved in bac"]
[null,"#",170077638,"Synechococcus_PCC_7002","/am/ftp-genomes/Bacteria/Synechococcus_PCC_7002/NC_010475.ptt",null,null,972]
[null,"1049976..1050095","-",39,170077637,"SYNPCC7002_A1016","hypothetical protein",982]
[null,"1050247..1052094","-",615,170077638,"SYNPCC7002_A1017","PIWI domain",983,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG1746","Argonaute homolog, implicated in RNA met ; tRNA nucleotidyltransferase (CCA-adding "]
[null,"1052582..1056574","-",1330,170077639,"SYNPCC7002_A1018","magnesium chelatase subunit H",984,null,"pfam02514","CobN/Magnesium Chelatase. This family co","COG1429","Cobalamin biosynthesis protein CobN and "]
[null,"#",56752529,"Synechococcus_elongatus_PCC_6301","/am/ftp-genomes/Bacteria/Synechococcus_elongatus_PCC_6301/NC_006576.ptt",null,null,994]
[null,"2689556..2690317","+",253,56752528,"syc2519_d","succinate dehydrogenase/fumarate reductase iron-sulfur subunit",1004,null,"cd01916,cd00207","Acetyl-CoA synthase (ACS), also known as ; 2Fe-2S iron-sulfur cluster binding domai","COG0479","Succinate dehydrogenase/fumarate reducta"]
[null,"2690440..2692647","+",735,56752529,"syc2520_d","PIWI domain",1005,null,"cd04659,pfam00739","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Trans-activation protein X. This protein","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"2692684..2693169","+",161,56752530,"syc2521_d","Rubisco chaperonin",1006,null,"pfam02341","RbcX protein. The RBCX protein has been "]
[null,"#",81300343,"Synechococcus_elongatus_PCC_7942","/am/ftp-genomes/Bacteria/Synechococcus_elongatus_PCC_7942/NC_007604.ptt",null,null,1016]
[null,"1592254..1593093","+",279,81300342,"Synpcc7942_1533","succinate dehydrogenase/fumarate reductase iron-sulfur subunit",1026,null,"cd01916,cd00207","Acetyl-CoA synthase (ACS), also known as ; 2Fe-2S iron-sulfur cluster binding domai","COG0479","Succinate dehydrogenase/fumarate reducta"]
[null,"1593215..1595422","+",735,81300343,"Synpcc7942_1534","PIWI domain",1027,null,"cd04659,pfam00739","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Trans-activation protein X. This protein","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1595486..1595944","+",152,81300344,"Synpcc7942_1535","Rubisco chaperonin",1028,null,"pfam02341","RbcX protein. The RBCX protein has been "]
[null,"#",116749911,"Syntrophobacter_fumaroxidans_MPOB","/am/ftp-genomes/Bacteria/Syntrophobacter_fumaroxidans_MPOB/NC_008554.ptt",null,null,1038]
[null,"3061297..3062553","-",418,116749910,"Sfum_2482","hypothetical protein",1048,"new_RecB2"]
[null,"3062541..3064856","-",771,116749911,"Sfum_2483","piwi domain-containing protein",1049,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431,COG4976,COG0841","Argonaute homolog, implicated in RNA met ; Predicted methyltransferase (contains TP ; Cation/multidrug efflux pump [Defense me"]
[null,"3065319..3065807","+",162,116749912,"Sfum_2484","hypothetical protein",1050]
[null,"#",212224657,"Thermococcus_onnurineus_NA1","/am/ftp-genomes/Bacteria/Thermococcus_onnurineus_NA1/NC_011529.ptt",null,null,1060]
[null,"1378818..1380524","+",568,212224656,"TON_1505","RNA-binding protein",1070,null,"pfam01472","PUA domain. The PUA domain named after P","COG1549","Queuine tRNA-ribosyltransferases, contai"]
[null,"1380525..1382825","-",766,212224657,"TON_1506","PIWI domain",1071,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"1382924..1383220","+",98,212224658,"TON_1507","hypothetical protein",1072,null,"pfam09876","Predicted metal-binding protein (DUF2103","COG4031","Predicted metal-binding protein [General"]
[null,"#",22298491,"Thermosynechococcus_elongatus","/am/ftp-genomes/Bacteria/Thermosynechococcus_elongatus/NC_004113.ptt",null,null,1082]
[null,"967460..967768","-",102,22298490,"tll0947","carbon dioxide concentrating mechanism protein",1092,null,"pfam00936","BMC domain. Bacterial microcompartments ","COG4577","Carbon dioxide concentrating mechanism/c"]
[null,"968180..970450","-",756,22298491,"tll0948","PIWI domain",1093,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"970494..971612","+",372,22298492,"tlr0949","hypothetical protein",1094,null,"pfam09731,pfam04395","Mitochondrial inner membrane protein. Mi ; Poxvirus B22R protein. ","COG5373,COG3456","Predicted membrane protein [Function unk ; Predicted component of the type VI prote"]
[null,"#",46255097,"Thermus_thermophilus_HB27","/am/ftp-genomes/Bacteria/Thermus_thermophilus_HB27/NC_005838.ptt",null,null,1104]
[null,"21474..22541","+",355,46255096,"TT_P0025","N-acetylglucosamine-6-phosphate deacetylase",1114,null,"cd00854","N-acetylglucosamine-6-phosphate deacetyl","COG1820","N-acetylglucosamine-6-phosphate deacetyl"]
[null,"22997..25054","-",685,46255097,"TT_P0026","PIWI domain",1115,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"25238..25633","+",131,46255098,"TT_P0027","DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction",1116,null,"pfam02635","DsrE/DsrF-like family. DsrE is a small s","COG1553","Uncharacterized conserved protein involv"]
[null,"#",55978251,"Thermus_thermophilus_HB8","/am/ftp-genomes/Bacteria/Thermus_thermophilus_HB8/NC_006462.ptt",null,null,1126]
[null,"57836..59341","-",501,55978250,"TTHB067","alkaline phosphatase",1136,null,"cd00016,cd00016","Alkaline phosphatase homologues; alkalin ; Alkaline phosphatase homologues; alkalin","COG1785","Alkaline phosphatase [Inorganic ion tran"]
[null,"59516..61573","-",685,55978251,"TTHB068","PIWI domain",1137,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[null,"61751..62152","+",133,55978252,"TTHB069","DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction",1138,null,"pfam02635","DsrE/DsrF-like family. DsrE is a small s","COG1553","Uncharacterized conserved protein involv"]
[null,"#",154244391,"Xanthobacter_autotrophicus_Py2","/am/ftp-genomes/Bacteria/Xanthobacter_autotrophicus_Py2/NC_009720.ptt",null,null,1148]
[null,"471114..472448","+",444,154244390,"Xaut_0433","hypothetical protein",1158,"new_RecB"]
[null,"472445..473893","+",482,154244391,"Xaut_0434","PIWI domain",1159,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG0287","Prephenate dehydrogenase [Amino acid tra"]
[null,"474143..477076","-",977,154244392,"Xaut_0435","type III restriction protein res subunit",1160,null,"pfam04851,cd03461","Type III restriction enzyme, res subunit ; Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ","COG1061,COG4096","DNA or RNA helicases of superfamily II [ ; Type I site-specific restriction-modific"]
[null,"#",188992493,"Xanthomonas_campestris_B100","/am/ftp-genomes/Bacteria/Xanthomonas_campestris_B100/NC_010688.ptt",null,null,1170]
[null,"3534535..3536508","+",657,188992492,"xccb100_3097","putative Sir2-family regulator",1180,"Sir2","cd01406","Sir2-like: Prokaryotic group of uncharac","COG3696,COG0846","Putative silver efflux pump [Inorganic i ; NAD-dependent protein deacetylases, SIR2"]
[null,"3536508..3537956","+",482,188992493,"xccb100_3098","PIWI domain",1181,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[null,"3538015..3538110","+",31,188992494,"xccb100_3099","hypothetical protein",1182]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2384012,2384326,"+",104,167754323,"ALIPUT_02616","hypothetical protein ALIPUT_02616",1203]
[2384399,2386231,"-",610,167754324,"ALIPUT_02617","hypothetical protein ALIPUT_02617",1204,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3950","Predicted ATP-binding protein involved i"]
[2386523,2387020,"-",165,167754325,"ALIPUT_02618","hypothetical protein ALIPUT_02618",1205,{"$nulls":3},"COG3417","Collagen-binding surface adhesin SpaP (a"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[153342,154760,"+",472,223934404,"Cflav_PD5942","conserved hypothetical protein ",1226,"new_RecB"]
[154757,156202,"+",481,223934405,"Cflav_PD5943","conserved hypothetical protein ",1227,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[156261,156779,"-",172,223934406,"Cflav_PD5944","hypothetical protein Cflav_PD5944 ",1228]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[636456,637859,"+",467,224023923,"BACCOPRO_00640","hypothetical protein BACCOPRO_00640 ",1250,"TIR","pfam01582,CHL00117","TIR domain. The Toll/interleukin-1 recep ; RNA polymerase beta&apos;&apos; subunit;"]
[637849,639345,"+",498,224023924,"BACCOPRO_00641","hypothetical protein BACCOPRO_00641 ",1251,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[639472,639798,"-",108,224023925,"BACCOPRO_00642","hypothetical protein BACCOPRO_00642 ",1252]
[{"$nulls":7},{"$error":"#N/A"}]
[null,null,"Bacteroides eggerthii DSM 20697",{"$nulls":4},{"$error":"#N/A"}]
[2368125,2369411,"+",428,218130588,"BACEGG_02177","ATPase (AAA+ superfamily), COG1373",1273,null,"cd00009","The AAA+ (ATPases Associated with a wide","COG1373","Predicted ATPase (AAA+ superfamily) [Gen"]
[2369456,2372572,"+",1038,218130589,"BACEGG_02178","hypothetical protein BACEGG_02178 ",1274,"Sir2 fused to Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","cd04659,cd00296","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","COG1431,COG1274","Argonaute homolog, implicated in RNA met ; Phosphoenolpyruvate carboxykinase (GTP) "]
[2372622,2372741,"+",39,218130590,"BACEGG_02179","hypothetical protein BACEGG_02179 ",1275]
[{"$nulls":7},{"$error":"#N/A"}]
[null,null,"Burkholderia ambifaria MEX-5",{"$nulls":4},{"$error":"#N/A"}]
[6286192,6286308,"+",38,171321417,"BamMEX5DRAFT_5721","hypothetical protein BamMEX5DRAFT_5721 ",1296]
[6286835,6289981,"+",1048,171321418,"BamMEX5DRAFT_5722","conserved hypothetical protein ",1297,"Sir2 fused to Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si ; TOPRIM_TopoIIB_SPO: topoisomerase-primas","cd04659,cd00296,cd00223","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si ; TOPRIM_TopoIIB_SPO: topoisomerase-primas","COG1431,COG0846,COG2929","Argonaute homolog, implicated in RNA met ; NAD-dependent protein deacetylases, SIR2 ; Uncharacterized protein conserved in bac"]
[6290007,6290186,"-",59,171321419,"BamMEX5DRAFT_5723","ISRSO10-transposase orfB protein ",1298,null,"pfam00665","Integrase core domain. Integrase mediate"]
[{"$nulls":7},{"$error":"#N/A"}]
[null,null,"Burkholderia graminis C4D1M",{"$nulls":4},{"$error":"#N/A"}]
[7206305,7207597,"+",430,170696577,"BgramDRAFT_6509","hypothetical protein BgramDRAFT_6509 ",1319,null,"pfam02463,pfam09369","RecF/RecN/SMC N terminal domain. This do ; Domain of unknown function (DUF1998). Th","COG0552","Signal recognition particle GTPase [Intr"]
[7207915,7211007,"-",1030,170696578,"BgramDRAFT_6510","conserved hypothetical protein ",1320,"Sir2 fused to Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si ; TOPRIM_TopoIIB_SPO: topoisomerase-primas","cd04659,cd01406","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Sir2-like: Prokaryotic group of uncharac","COG5511,COG0846","Bacteriophage capsid protein [General fu ; NAD-dependent protein deacetylases, SIR2"]
[7212002,7213564,"+",520,170696580,"BgramDRAFT_6511","PAS/PAC sensor signal transduction histidine kinase ",1321,null,"pfam02518,pfam08447,cd00082","Histidine kinase-, DNA gyrase B-, and HS ; PAS fold. The PAS fold corresponds to th ; Histidine Kinase A (dimerization/phospho","COG4191,COG2202","Signal transduction histidine kinase reg ; FOG: PAS/PAC domain [Signal transduction"]
[{"$nulls":7},{"$error":"#N/A"}]
[null,null,"Burkholderia sp. H160",{"$nulls":4},{"$error":"#N/A"}]
[1099780,1101558,"+",592,209515878,"BH160DRAFT_1017","protein of unknown function DUF262 ",1342,null,"pfam09854,pfam03235","Uncharacterized conserved protein (DUF20 ; Protein of unknown function DUF262. ","COG3472,COG1479","Uncharacterized conserved protein [Funct ; Uncharacterized conserved protein [Funct"]
[1101919,1104927,"+",1002,209515879,"BH160DRAFT_1018","conserved hypothetical protein ",1343,"Sir2 fused to Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si ; TOPRIM_TopoIIB_SPO: topoisomerase-primas","cd04659,cd00296","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; SIR2 superfamily of proteins includes si","COG0846","NAD-dependent protein deacetylases, SIR2"]
[1104994,1106862,"-",622,209515880,"BH160DRAFT_1019","hypothetical protein BH160DRAFT_1019 ",1344,null,"cd05599","STKc_NDR_like: Serine/Threonine Kinases "]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2121352,2122773,"+",473,227332661,"CIT292_02158","hypothetical protein CIT292_02158 ",1367,"new_RecB"]
[2123060,2124154,"+",364,229219623,"CIT292_02159","hypothetical protein CIT292_02159 ",1368,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[2124591,2125067,"-",158,227332663,"CIT292_02160","hypothetical protein CIT292_02160 ",1369,null,"pfam05827","Vacuolar ATP synthase subunit S1 (ATP6S1"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2747410,2747772,"+",120,164686206,"CLOBAR_02644","hypothetical protein CLOBAR_02644 ",1390,null,"cd00814","This is the catalytic core domain of met"]
[2747837,2750047,"-",736,164686207,"CLOBAR_02645","hypothetical protein CLOBAR_02645 ",1391,null,"cd04659,cd01677","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; PFL2_DhaB_BssA  This CD includes pyruvat","COG1431","Argonaute homolog, implicated in RNA met"]
[2750757,2752127,"+",456,164686208,"CLOBAR_02646","hypothetical protein CLOBAR_02646 ",1392,null,"pfam01235","Sodium:alanine symporter family. ","COG1115","Na+/alanine symporter [Amino acid transp"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2687693,2687821,"-",42,196245472,"Cyan8802DRAFT_2593","hypothetical protein Cyan8802DRAFT_2593 ",1414]
[2688184,2690100,"+",638,196245474,"Cyan8802DRAFT_2594","stem cell self-renewal protein Piwi domain protein ",1415,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[2690229,2690357,"-",42,196245475,"Cyan8802DRAFT_2595","photosystem I reaction centre subunit IX / PsaJ ",1416,null,"pfam01701","Photosystem I reaction centre subunit IX"]
[{"$nulls":7},{"$error":"#N/A"}]
[2077471,2078871,"+",466,229917850,"EAT1b_2128","???",1436,null,"pfam02601,cd05016","Exonuclease VII, large subunit. This fam ; Phosphoglucose isomerase (PGI) contains ","COG5022","Myosin heavy chain [Cytoskeleton]"]
[2078990,2079280,"+",96,229917851,"EAT1b_2129","piwi - N-terminal fragment",1437]
[2079277,2081094,"+",605,229917852,"EAT1b_2130","stem cell self-renewal protein Piwi domain protein ",1438,null,"cd04659,pfam06074","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Protein of unknown function (DUF935). Th","COG1431","Argonaute homolog, implicated in RNA met"]
[2081197,2081619,"+",140,229917853,"EAT1b_2131","hypothetical protein EAT1b_2131 ",1439,null,"pfam03060","2-nitropropane dioxygenase. Members of t","COG1577","Mevalonate kinase [Lipid metabolism]"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[5667280,5668275,"-",331,168702706,"GobsU_010100024476","transposase IS4 family protein ",1461,null,"pfam01609","Transposase DDE domain. Transposase prot"]
[5668436,5669992,"+",518,168702707,"GobsU_010100024481","stem cell self-renewal protein Piwi domain protein ",1462,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1080","Phosphoenolpyruvate-protein kinase (PTS "]
[5669989,5671308,"+",439,168702708,"GobsU_010100024486","hypothetical protein GobsU_24486 ",1463,"new_RecB2","pfam08357","SEFIR domain. This family comprises IL17"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2412583,2414703,"-",706,227881907,"HborDRAFT_2562","ATPase fused to some N-terminal domain",1485,null,"cd00138","Phospholipase D. Active site motifs; The","COG3886","Predicted HKD family nuclease [DNA repli"]
[2414767,2417454,"-",895,227881908,"HborDRAFT_2563","uncharacterized protein containing piwi/argonaute domain ",1486,null,"cd04659,pfam05110","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; AF-4 proto-oncoprotein. This family cons","COG1431","Argonaute homolog, implicated in RNA met"]
[2417713,2419389,"+",558,227881909,"HborDRAFT_2564","hypothetical protein HborDRAFT_2564 ",1487,null,"smart00382","ATPases associated with a variety of cel","COG1373","Predicted ATPase (AAA+ superfamily) [Gen"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[6436914,6437150,"+",78,119493537,"L8106_18217","hypothetical protein L8106_18217 ",1508]
[6437162,6439456,"-",764,119493538,"L8106_18222","hypothetical protein L8106_18222 ",1509,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[6439453,6439705,"-",83,119493539,"L8106_18227","RecB nuclease, fragment",1510,"COG1468","pfam09421","Frequency clock protein. The frequency c","COG1468","CRISPR-associated protein Cas4 (RecB fam"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[1273705,1274319,"+",204,114777172,"SPV1_08903","phosphoserine phosphatase ",1532,null,"pfam00702","haloacid dehalogenase-like hydrolase. Th","COG0560","Phosphoserine phosphatase [Amino acid tr"]
[1274519,1277173,"-",884,114777173,"SPV1_08908","Piwi domain protein ",1533,null,"cd04659,pfam01094","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; Receptor family ligand binding region. T"]
[1277814,1278605,"-",263,114777174,"SPV1_08913","hypothetical protein SPV1_08913 ",1534,null,"pfam04305","Protein of unknown function (DUF455). ","COG2833","Uncharacterized protein conserved in bac"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[746734,747090,"-",118,154490796,"PARMER_00713","hypothetical protein PARMER_00713 ",1555,{"$nulls":3},"COG0386","Glutathione peroxidase [Posttranslationa"]
[747270,749093,"-",607,154490797,"PARMER_00714","hypothetical protein PARMER_00714 ",1556,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[749041,750411,"-",456,154490798,"PARMER_00715","hypothetical protein PARMER_00715 ",1557,"Sir2","cd00296","SIR2 superfamily of proteins includes si","COG0846","NAD-dependent protein deacetylases, SIR2"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[637589,637963,"+",124,84701996,"PB2503_03522","hypothetical protein PB2503_03522 ",1578]
[638325,639755,"-",476,84701997,"PB2503_03527","Piwi domain protein ",1579,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG2113","ABC-type proline/glycine betaine transpo"]
[639752,641536,"-",594,84701998,"PB2503_03532","hypothetical protein PB2503_03532 ",1580,"Sir2","cd01406","Sir2-like: Prokaryotic group of uncharac","COG0846","NAD-dependent protein deacetylases, SIR2"]
[{"$nulls":7},{"$error":"#N/A"}]
[1098875,1100038,"-",387,84702442,"PB2503_05752","hypothetical protein PB2503_05752 ",1600,"new_RecB2"]
[1100038,1102338,"-",766,84702443,"PB2503_05757","hypothetical protein PB2503_05757 ",1601,null,"cd04659,pfam09623","Piwi_piwi-like_ProArk: PIWI domain, Piwi ; CRISPR-associated protein NE0113 (Cas_NE"]
[1102551,1103465,"-",304,84702444,"PB2503_05762","hypothetical protein PB2503_05762 ",1602,null,"pfam08843","Domain of unknown function (DUF1814). Th","COG2253","Uncharacterized conserved protein [Funct"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[1169721,1171091,"+",456,84702494,"PB2503_06012","hypothetical protein PB2503_06012 ",1622,"new_RecB"]
[1171088,1172506,"+",472,84702495,"PB2503_06017","hypothetical protein PB2503_06017 ",1623,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[1172512,1173927,"+",471,84702496,"PB2503_06022","hypothetical protein PB2503_06022 ",1624,null,"pfam06032,pfam03337","Protein of unknown function (DUF917). Th ; Poxvirus F12L protein. ","COG5440","Uncharacterized conserved protein [Funct"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[4644017,4644583,"-",188,229204036,"PhepDRAFT_4097","RNA polymerase sigma factor, sigma-70 family ",1645,null,"pfam08281,pfam04542","Sigma-70, region 4. Region 4 of sigma-70 ; Sigma-70 region 2. Region 2 of sigma-70 ","COG1595","DNA-directed RNA polymerase specialized "]
[4645178,4647058,"+",626,229204037,"PhepDRAFT_4098","hypothetical protein PhepDRAFT_4098 ",1646,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[4647060,4648139,"+",359,229204038,"PhepDRAFT_4099","hypothetical protein PhepDRAFT_4099 ",1647,"Sir2","cd01150","Peroxisomal acyl-CoA oxidases (AXO) cata"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[4705542,4707278,"+",578,229540344,"PlimDRAFT_42100","hypothetical protein PlimDRAFT_42100 ",1668,"Sir2","cd01406,cd03089","Sir2-like: Prokaryotic group of uncharac ; The phosphomannomutase/phosphoglucomutas","COG0846","NAD-dependent protein deacetylases, SIR2"]
[4707473,4708696,"+",407,229540345,"PlimDRAFT_42110","hypothetical protein PlimDRAFT_42110 ",1669,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG2382","Enterochelin esterase and related enzyme"]
[4709048,4709869,"+",273,229540346,"PlimDRAFT_42120","hypothetical protein PlimDRAFT_42120 ",1670]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2415000,2416367,"+",455,149175029,"PM8797T_25156","hypothetical protein PM8797T_25156 ",1691,"new_RecB","cd01425","Ribosomal protein S2 (RPS2), involved in"]
[2416357,2417898,"+",513,149175030,"PM8797T_25161","hypothetical protein PM8797T_25161 ",1692,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[2418087,2419634,"+",515,149175031,"PM8797T_25166","arylsulfatase A precursor ",1693,null,"pfam00884","Sulfatase. ","COG3119","Arylsulfatase A and related enzymes [Ino"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[112444,113850,"+",468,223987887,"PROVRETT_00110","hypothetical protein PROVRETT_00110 ",1714,"new_RecB",null,null,"COG5103","Cell division control protein, negative "]
[113816,115258,"+",480,223987888,"PROVRETT_00111","hypothetical protein PROVRETT_00111 ",1715,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG2842","Uncharacterized ATPase, putative transpo"]
[115459,116268,"+",269,223987889,"PROVRETT_00112","hypothetical protein PROVRETT_00112 ",1716,null,"pfam06100","Streptococcal 67 kDa myosin-cross-reacti","COG4716","Myosin-crossreactive antigen [Function u"]
[{"$nulls":7},{"$error":"#N/A"}]
[null,"#",null,"Rhodobacterales bacterium HTCC2654",{"$nulls":3},{"$error":"#N/A"}]
[3175365,3175964,"-",199,84686686,"RB2654_00590","HTH",1737,null,"pfam01381","Helix-turn-helix. This large family of D","COG3620","Predicted transcriptional regulator with"]
[3176209,3177684,"-",491,84686687,"RB2654_00595","hypothetical protein RB2654_00595 ",1738,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[3177681,3179015,"-",444,84686688,"RB2654_00600","hypothetical protein RB2654_00600 ",1739,"new_RecB",null,null,"COG0598","Mg2+ and Co2+ transporters [Inorganic io"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[5446924,5447229,"+",101,229871909,"SlinDRAFT_45790","AT-HTH addiction module antidote protein, HigA family ",1760,null,"pfam01381","Helix-turn-helix. This large family of D","COG3093","Plasmid maintenance system antidote prot"]
[5447279,5449174,"+",631,229871910,"SlinDRAFT_45800","Piwi domain-containing protein ",1761,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[5449184,5450254,"+",356,229871911,"SlinDRAFT_45810","hypothetical protein SlinDRAFT_45810 ",1762,"Sir2","cd00296","SIR2 superfamily of proteins includes si"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2536526,2537362,"-",278,83954751,"NAS141_16058","hypothetical protein NAS141_16058 ",1784,null,"cd06390","N-terminal leucine/isoleucine/valine-bin","COG3573,COG2401","Predicted oxidoreductase [General functi ; ABC-type ATPase fused to a predicted ace"]
[2537958,2539400,"-",480,83954752,"NAS141_16063","hypothetical protein NAS141_16063 ",1785,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG3663","G:T/U mismatch-specific DNA glycosylase "]
[2539397,2540743,"-",448,83954753,"NAS141_16068","hypothetical protein NAS141_16068 ",1786,"new_RecB","cd05534","DNA polymerase type-B zeta subfamily cat"]
[{"$nulls":7},{"$error":"#N/A"}]
[null,"#",null,"Sulfolobus islandicus M.16.27",{"$nulls":3},{"$error":"#N/A"}]
[1451298,1452029,"+",243,229584953,"M1627_1527","hypothetical protein M1627_1527 ",1807,null,"pfam09989","CoA enzyme activase uncharacterised doma","COG5099","RNA-binding protein of the Puf family, t"]
[1452026,1453405,"-",459,229584954,"M1627_1528","hypothetical protein M1627_1528 ",1808,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[1453402,1453677,"-",91,229584955,"M1627_1529","HTH (ArsR or MarR)",1809,null,"smart00347","helix_turn_helix multiple antibiotic res","COG4190","Predicted transcriptional regulator [Tra"]
[{"$nulls":7},{"$error":"#N/A"}]
[null,"#",null,"Sulfolobus islandicus Y.G.57.14",{"$nulls":3},{"$error":"#N/A"}]
[1478712,1479443,"+",243,229579409,"YG5714_1625","hypothetical protein YG5714_1625 ",1830]
[1479440,1480819,"-",459,229579410,"YG5714_1626","stem cell self-renewal protein Piwi domain protein ",1831,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[1480816,1481091,"-",91,229579411,"YG5714_1627","HTH (ArsR or MarR)",1832,null,"smart00347","helix_turn_helix multiple antibiotic res","COG4190","Predicted transcriptional regulator [Tra"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[864,2780,"+",638,162145848,"GDI_0003","hypothetical protein GDI_0003 ",1854,"Mrr(recB) fused to TIR and new_RecB","smart00255,cd01703","Toll - interleukin 1 - resistance; ","COG1537","Predicted RNA-binding proteins [General "]
[2777,4333,"+",518,162145849,"GDI_0004","hypothetical protein GDI_0004 ",1855,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi"]
[7082,7918,"-",278,162145850,"GDI_0007","COG3293,L,putative transposase ",1856,null,"pfam01609","Transposase DDE domain. Transposase prot","COG3293,COG3293","Transposase and inactivated derivatives  ; Transposase and inactivated derivatives "]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[117839,118606,"-",null,223476482,"TERMP_1530","hypothetical protein",1877,null,"pfam04961","Formiminotransferase-cyclodeaminase. Mem","COG1283","Na+/phosphate symporter [Inorganic ion t"]
[119260,121764,"-",null,223476486,"TERMP_1534","[J] COG1431 Uncharacterized protein containing",1878,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[122000,123256,"+",null,223476024,"TERMP_1072","hypothetical protein",1879,null,"cd00397","DNA breaking-rejoining enzymes, C-termin","COG4974","Site-specific recombinase XerD [DNA repl"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[42190,42921,"+",null,223489661,"CDSM653_369","hypothetical protein ",1899]
[42924,44222,"+",null,223489681,"CDSM653_390","Piwi domain-containing protein ",1900,null,"cd04659","Piwi_piwi-like_ProArk: PIWI domain, Piwi","COG1431","Argonaute homolog, implicated in RNA met"]
[44210,45364,"+",null,223489652,"CDSM653_360","[K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit ",1901,null,"pfam09509","Protein of unknown function (Hypoth_ymh)"]
[{"$nulls":7},{"$error":"#N/A"}]
[{"$nulls":7},{"$error":"#N/A"}]
[2077471,2078871,"+",466,229917850,null,"hypothetical protein EAT1b_2128 ",1436,null,"EAT1b_2128"]
[2078990,2079280,"+",96,229917851,null,"piwi fragment",1437,null,"EAT1b_2129","-","    "]
[2079277,2081094,"+",605,229917852,null,"stem cell self-renewal protein Piwi domain protein ",1438,null,"EAT1b_2130","-","    "]
[2081197,2081619,"+",140,229917853,null,"hypothetical protein EAT1b_2131 ",1439,null,"EAT1b_2131","-"]

{"sheet":"Sheet1","index":2,"n_rows":675,"n_cols":7,"rows_kept":675,"flags":["formulas_cached_only"]}
[11498906,"gen774",11498906,243,1,243,"COG0125"]
[11498907,"gen774",11498907,211,1,211,"COG0170"]
[11498908,"gen774",11498908,299,1,299,"COG2801"]
[11498909,"gen774",11498909,287,1,287,"COG1032"]
[11498910,"gen774",11498910,338,1,338,"COG2834"]
[11498911,"gen774",11498911,256,1,256,"COG2043"]
[11498913,"gen774",11498913,331,1,331,"COG1804"]
[11498914,"gen774",11498914,396,1,396,"COG0498"]
[11498916,"gen774",11498916,427,1,427,"COG1431"]
[11498918,"gen774",11498918,183,1,183,"COG0518"]
[11498919,"gen774",11498919,287,1,287,"COG0037"]
[11498920,"gen774",11498920,501,1,501,"COG0750"]
[11498921,"gen774",11498921,488,1,488,"COG0076"]
[11498922,"gen774",11498922,505,1,505,"COG1070"]
[11498923,"gen774",11498923,371,1,371,"COG2814"]
[11498924,"gen774",11498924,197,1,197,"COG0218"]
[11498926,"gen774",11498926,453,1,370,"COG0579"]
[11498926,"gen774",11498926,453,371,453,"COG2906"]
[13475174,"gen774",13475174,519,1,519,"COG0476"]
[13475179,"gen774",13475179,240,1,240,"COG1386"]
[13475183,"gen774",13475183,505,1,505,"COG1431"]
[13475184,"gen774",13475184,72,1,72,"COG1410"]
[13475185,"gen774",13475185,423,1,248,"COG1410"]
[13475185,"gen774",13475185,423,249,423,"COG1410"]
[13475186,"gen774",13475186,446,1,446,"COG0534"]
[13475187,"gen774",13475187,369,1,369,"COG0076"]
[13475188,"gen774",13475188,465,1,465,"COG0174"]
[13475189,"gen774",13475189,397,1,397,"COG0787"]
[13475193,"gen774",13475193,446,1,446,"COG2079"]
[15606609,"gen774",15606609,119,1,119,"COG2165"]
[15606612,"gen774",15606612,276,1,276,"COG2165"]
[15606614,"gen774",15606614,584,1,584,"COG0747"]
[15606615,"gen774",15606615,1054,1,214,"COG3221"]
[15606615,"gen774",15606615,1054,215,432,"COG2202"]
[15606615,"gen774",15606615,1054,433,655,"COG2202"]
[15606615,"gen774",15606615,1054,656,797,"COG2114"]
[15606615,"gen774",15606615,1054,798,1054,"COG2200"]
[15606616,"gen774",15606616,195,1,195,"COG2078"]
[15606617,"gen774",15606617,679,1,85,"COG2608"]
[15606617,"gen774",15606617,679,86,679,"COG2217"]
[15606619,"gen774",15606619,706,1,706,"COG1431"]
[15606620,"gen774",15606620,139,1,139,"COG1051"]
[15606621,"gen774",15606621,453,1,364,"COG0265"]
[15606621,"gen774",15606621,453,365,453,"COG0265"]
[15606622,"gen774",15606622,310,1,310,"COG0568"]
[15606623,"gen774",15606623,270,1,270,"COG3287"]
[15606624,"gen774",15606624,236,1,236,"COG2199"]
[15606625,"gen774",15606625,210,1,210,"COG0500"]
[15606626,"gen774",15606626,301,1,301,"COG0404"]
[15606627,"gen774",15606627,582,1,582,"COG0675"]
[15606628,"gen774",15606628,296,1,296,"COG0730"]
[15606629,"gen774",15606629,249,1,249,"COG1187"]
[15669501,"gen774",15669501,293,1,293,"COG1082"]
[15669502,"gen774",15669502,321,1,321,"COG0731"]
[15669503,"gen774",15669503,403,1,403,"COG1679"]
[15669504,"gen774",15669504,307,1,307,"COG1270"]
[15669505,"gen774",15669505,361,1,361,"COG1341"]
[15669506,"gen774",15669506,80,1,80,"COG1531"]
[15669507,"gen774",15669507,398,1,398,"COG2211"]
[15669508,"gen774",15669508,602,1,602,"COG1750"]
[15669509,"gen774",15669509,492,1,492,"COG0733"]
[15669510,"gen774",15669510,131,1,131,"COG1412"]
[15669511,"gen774",15669511,713,1,713,"COG1431"]
[15669512,"gen774",15669512,1005,1,1005,"COG0419"]
[15669513,"gen774",15669513,366,1,366,"COG0420"]
[15669514,"gen774",15669514,234,1,234,"COG1763"]
[15669515,"gen774",15669515,89,1,89,"COG0640"]
[15669516,"gen774",15669516,391,1,391,"COG1163"]
[15669519,"gen774",15669519,294,1,294,"COG0024"]
[15669520,"gen774",15669520,127,1,127,"COG1267"]
[15669894,"gen774",15669894,277,1,277,"COG0827"]
[15922254,"gen774",15922254,441,1,441,"COG0675"]
[15922255,"gen774",15922255,202,1,202,"COG2452"]
[15922257,"gen774",15922257,354,1,354,"COG1106"]
[15922259,"gen774",15922259,73,1,73,"COG1753"]
[15922260,"gen774",15922260,133,1,133,"COG1487"]
[15922261,"gen774",15922261,293,1,112,"COG2452"]
[15922261,"gen774",15922261,293,113,293,"COG0501"]
[15922263,"gen774",15922263,465,1,465,"COG1431"]
[15922268,"gen774",15922268,469,1,469,"COG2244"]
[15922272,"gen774",15922272,504,1,504,"COG2192"]
[18976900,"gen774",18976900,269,1,269,"COG1122"]
[18976901,"gen774",18976901,217,1,217,"COG0619"]
[18976903,"gen774",18976903,204,1,204,"COG0310"]
[18976904,"gen774",18976904,457,1,457,"COG1042"]
[18976905,"gen774",18976905,646,1,646,"COG4231"]
[18976906,"gen774",18976906,214,1,214,"COG1014"]
[18976907,"gen774",18976907,142,1,142,"COG1356"]
[18976908,"gen774",18976908,233,1,233,"COG3316"]
[18976909,"gen774",18976909,770,1,770,"COG1431"]
[18976912,"gen774",18976912,244,1,244,"COG1351"]
[18976913,"gen774",18976913,295,1,295,"COG0024"]
[18976914,"gen774",18976914,401,1,401,"COG0303"]
[18976915,"gen774",18976915,90,1,90,"COG1977"]
[18976916,"gen774",18976916,133,1,133,"COG0432"]
[20089846,"gen774",20089846,243,1,243,"COG0284"]
[20089847,"gen774",20089847,830,1,280,"COG2202"]
[20089847,"gen774",20089847,830,281,439,"COG2203"]
[20089847,"gen774",20089847,830,440,579,"COG2202"]
[20089847,"gen774",20089847,830,580,830,"COG3920"]
[20089848,"gen774",20089848,149,1,149,"COG0735"]
[20089849,"gen774",20089849,736,1,736,"COG0376"]
[20089851,"gen774",20089851,108,1,108,"COG0389"]
[20089852,"gen774",20089852,456,1,456,"COG3259"]
[20089853,"gen774",20089853,159,1,159,"COG0680"]
[20089854,"gen774",20089854,262,1,262,"COG1941"]
[20089855,"gen774",20089855,291,1,291,"COG1035"]
[20089858,"gen774",20089858,89,1,89,"COG2026"]
[20089859,"gen774",20089859,117,1,117,"COG1487"]
[20089863,"gen774",20089863,241,1,132,"COG3369"]
[20089863,"gen774",20089863,241,133,241,"COG3369"]
[20089864,"gen774",20089864,246,1,246,"COG1994"]
[20089865,"gen774",20089865,200,1,200,"COG0727"]
[20089866,"gen774",20089866,284,1,123,"COG0789"]
[20089866,"gen774",20089866,284,124,284,"COG4978"]
[20094742,"gen774",20094742,491,1,491,"COG0438"]
[20094746,"gen774",20094746,101,1,101,"COG1343"]
[20094747,"gen774",20094747,711,1,711,"COG1431"]
[20094748,"gen774",20094748,331,1,331,"COG1518"]
[20094750,"gen774",20094750,913,1,142,"COG1418"]
[20094750,"gen774",20094750,913,143,913,"COG1353"]
[20094751,"gen774",20094751,174,1,174,"COG1421"]
[20094752,"gen774",20094752,351,1,351,"COG1337"]
[20094753,"gen774",20094753,363,1,363,"COG1567"]
[20094755,"gen774",20094755,363,1,363,"COG1332"]
[20094756,"gen774",20094756,257,1,257,"COG0726"]
[21225122,"gen774",21225122,117,1,117,"COG0640"]
[21225124,"gen774",21225124,531,1,531,"COG1884"]
[21225125,"gen774",21225125,159,1,159,"COG2185"]
[21225126,"gen774",21225126,326,1,326,"COG0492"]
[21225127,"gen774",21225127,137,1,137,"COG0394"]
[21225128,"gen774",21225128,102,1,102,"COG0640"]
[21225129,"gen774",21225129,368,1,368,"COG0798"]
[21225130,"gen774",21225130,354,1,354,"COG2072"]
[21225132,"gen774",21225132,681,1,681,"COG1431"]
[21225133,"gen774",21225133,350,1,192,"COG1637"]
[21225133,"gen774",21225133,350,193,350,"COG3586"]
[21225135,"gen774",21225135,372,1,372,"COG0305"]
[21225136,"gen774",21225136,423,1,423,"COG0270"]
[22298481,"gen774",22298481,346,1,346,"COG1077"]
[22298482,"gen774",22298482,254,1,254,"COG1792"]
[22298483,"gen774",22298483,175,1,175,"COG2891"]
[22298485,"gen774",22298485,449,1,449,"COG2265"]
[22298486,"gen774",22298486,220,1,220,"COG0663"]
[22298487,"gen774",22298487,652,1,203,"COG0663"]
[22298487,"gen774",22298487,652,204,325,"COG4451"]
[22298487,"gen774",22298487,652,326,436,"COG4451"]
[22298487,"gen774",22298487,652,437,549,"COG4451"]
[22298487,"gen774",22298487,652,550,652,"COG4451"]
[22298488,"gen774",22298488,99,1,99,"COG4576"]
[22298489,"gen774",22298489,113,1,113,"COG4577"]
[22298490,"gen774",22298490,102,1,102,"COG4577"]
[22298491,"gen774",22298491,756,1,756,"COG1431"]
[22298493,"gen774",22298493,648,1,648,"COG0661"]
[22298494,"gen774",22298494,304,1,304,"COG1091"]
[22298495,"gen774",22298495,1142,1,1142,"COG1197"]
[22298496,"gen774",22298496,273,1,273,"COG0805"]
[22298497,"gen774",22298497,119,1,119,"COG4577"]
[32141315,"gen774",32141315,575,1,575,"COG3505"]
[39996453,"gen774",39996453,322,1,322,"COG2221"]
[39996454,"gen774",39996454,74,1,74,"COG0425"]
[39996455,"gen774",39996455,91,1,91,"COG2161"]
[39996456,"gen774",39996456,103,1,103,"COG3668"]
[39996458,"gen774",39996458,296,1,296,"COG2801"]
[39996459,"gen774",39996459,118,1,118,"COG1694"]
[39996460,"gen774",39996460,800,1,424,"COG0507"]
[39996460,"gen774",39996460,800,425,636,"COG3410"]
[39996460,"gen774",39996460,800,637,800,"COG2932"]
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[39996461,"gen774",39996461,1041,288,1041,"COG1061"]
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