{"text_format":"3","workbook":"xls","n_sheets":3,"sheets":["phage_defense","mobilome_COGs","Sheet3"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"phage_defense","index":0,"n_rows":140,"n_cols":3,"rows_kept":140,"flags":["formulas_cached_only"]}
["COG","COG definition","Type of the system (RM - restriction modification; Abi - abortive infection, CRISPR - CRISPR systems related, TA -toxin-antitoxin)"]
["COG0116","Predicted N6-adenine-specific DNA methylase ","RM"]
["COG0182","Translation initiation factor eIF-2B alpha subunit ","RM"]
["COG0270","Site-specific DNA methylase ","RM"]
["COG0286","Type I restriction-modification system methyltransferase subunit ","RM"]
["COG0338","Site-specific DNA methylase ","RM"]
["COG0610","Type I site-specific restriction-modification system, R (restriction) subunit or related helicase ","RM"]
["COG0732","Restriction endonuclease S subunit ","RM"]
["COG0742","N6-adenine-specific methylase ","RM"]
["COG0827","Adenine-specific DNA methylase ","RM"]
["COG0863","DNA modification methylase ","RM"]
["COG1002","Type II restriction enzyme, methylase subunit ","RM"]
["COG1041","Predicted DNA modification methylase ","RM"]
["COG1061","DNA or RNA helicase of superfamily II ","RM"]
["COG1401","GTPase subunit of restriction endonuclease ","RM"]
["COG1403","Restriction endonuclease, McrA/HNH family","RM"]
["COG1715","Restriction endonuclease ","RM"]
["COG1743","Adenine-specific DNA methylase containing a Zn-ribbon ","RM"]
["COG1787","Endonuclease, HJR/Mrr/RecB family","RM"]
["COG2189","Adenine specific DNA methylase Mod ","RM"]
["COG2263","Predicted RNA methylase ","RM"]
["COG2810","Predicted type IV restriction endonuclease ","RM"]
["COG2852","Very-short-patch-repair endonuclease","RM"]
["COG3183","Predicted restriction endonuclease ","RM"]
["COG3392","Adenine-specific DNA methylase ","RM"]
["COG3440","Predicted restriction endonuclease ","RM"]
["COG3587","Restriction endonuclease ","RM"]
["COG4096","Type I site-specific restriction-modification system, R (restriction) subunit or related helicase ","RM"]
["COG4748","Uncharacterized conserved protein ","RM"]
["COG4889","Predicted helicase ","RM"]
["COG4951","Uncharacterized protein conserved in bacteria ","RM"]
["COG4268","McrBC 5-methylcytosine restriction system component ","RM"]
["COG4823","Abortive infection bacteriophage resistance protein ","Abi"]
["COG5340","Predicted transcriptional regulator ","Abi"]
["COG4861","Uncharacterized protein conserved in bacteria ","Abi"]
["COG2253","Uncharacterized conserved protein ","Abi"]
["COG4849","Uncharacterized protein conserved in bacteria ","Abi"]
["COG4914","Predicted nucleotidyltransferase ","Abi"]
["COG1106","Predicted ATPase ","Abi"]
["COG3410","Uncharacterized conserved protein ","Abi"]
["COG4694","Uncharacterized protein conserved in bacteria ","Abi"]
["COG3344","Retron-type reverse transcriptase ","Abi"]
["COG1518","Putative nuclease/integrase","CRISPR"]
["COG1343","RNA nuclease","CRISPR"]
["COG1203","Helocase","CRISPR"]
["COG1468","RecB-like nuclease","CRISPR"]
["COG4343","RecB-like nuclease","CRISPR"]
["COG1688","RAMP","CRISPR"]
["COG1769","RAMP","CRISPR"]
["COG1583","RAMP","CRISPR"]
["COG1567","RAMP","CRISPR"]
["COG1336","RAMP","CRISPR"]
["COG1367","RAMP","CRISPR"]
["COG1604","RAMP","CRISPR"]
["COG1337","RAMP","CRISPR"]
["COG1332","RAMP","CRISPR"]
["COG5551","RAMP","CRISPR"]
["COG1857","CRISPR system associated protein, COG1857 family","CRISPR"]
["COG3649","CRISPR associated protein, COG1857 family","CRISPR"]
["COG2254","HD-like nuclease","CRISPR"]
["COG1353","Predicted polymerase","CRISPR"]
["COG1517","CRISPR associated protein, COG1517 family","CRISPR"]
["COG1421","CRISPR associated protein, COG1421 family","CRISPR"]
["COG3337","CRISPR associated protein, COG3337 family","CRISPR"]
["COG4006","CRISPR associated protein, COG4006 family","CRISPR"]
["COG3513","CRISPR associated protein, containing HNH- and RuvC-like nuclease domain","CRISPR"]
["COG0640","AT_HTH","TA"]
["COG0864","AT_CopG","TA"]
["COG1396","AT_HTH","TA"]
["COG1476","AT_HTH","TA"]
["COG1487","T_PIN","TA"]
["COG1569","T_PIN","TA"]
["COG1598","hicB","TA"]
["COG1669","MNT","TA"]
["COG1708","MNT","TA"]
["COG1724","hicA","TA"]
["COG1753","AT_new4","TA"]
["COG1848","T_PIN","TA"]
["COG1895","SNAD","TA"]
["COG2002","AT_AbrB/MazE/PemI","TA"]
["COG2026","T_RelE","TA"]
["COG2161","AT_StbD_axe","TA"]
["COG2184","T_Fic/Doc","TA"]
["COG2250","SNAD","TA"]
["COG2253","NT_new1?","TA"]
["COG2336","AT_AbrB/MazE/PemI","TA"]
["COG2337","T_MazF","TA"]
["COG2361","SNAD","TA"]
["COG2402","T_PIN","TA"]
["COG2405","T_PIN","TA"]
["COG2442","AT_HTH(new)","TA"]
["COG2445","SNAD","TA"]
["COG2856","T_IrrE","TA"]
["COG2880","AT_AF0319","TA"]
["COG2886","AT_HTH","TA"]
["COG2929","T_new3","TA"]
["COG2944","AT_HTH","TA"]
["COG3041","T_RelE","TA"]
["COG3077","AT_CopG","TA"]
["COG3093","AT_HTH","TA"]
["COG3177","T_Fic/Doc","TA"]
["COG3514","AT_CopG","TA"]
["COG3549","T_RelE","TA"]
["COG3550","T_HipA","TA"]
["COG3609","AT_CopG","TA"]
["COG3636","AT_HTH","TA"]
["COG3654","T_Fic/Doc","TA"]
["COG3657","T_RelE","TA"]
["COG3668","T_RelE","TA"]
["COG3692","T_MazF","TA"]
["COG3742","T_PIN","TA"]
["COG3744","T_PIN","TA"]
["COG3832","T_new5?","TA"]
["COG3905","AT_CopG","TA"]
["COG4113","T_PIN","TA"]
["COG4115","T_RelE","TA"]
["COG4118","AT_StbD","TA"]
["COG4226","hicB","TA"]
["COG4374","T_PIN","TA"]
["COG4423","AT_CopG","TA"]
["COG4453","AT_CopG","TA"]
["COG4456","AT_AbrB/MazE/PemI","TA"]
["COG4634","T_PIN","TA"]
["COG4636","T_RecB","TA"]
["COG4679","T_RelE","TA"]
["COG4680","T_RelE_new2","TA"]
["COG4683","T_RelE","TA"]
["COG4691","AT_CopG","TA"]
["COG4710","AT_CopG","TA"]
["COG4737","T_RelE","TA"]
["COG5302","AT_CcdA","TA"]
["COG5304","AT_CopG","TA"]
["COG5340","AT_COG2253","TA"]
["COG5450","AT_CopG","TA"]
["COG5499","AT_HTH","TA"]
["COG5559","AT_HTH","TA"]
["COG5573","T_PIN","TA"]
["COG5606","AT_HTH","TA"]
["COG5642","AT_HTH","TA"]
["COG5654","T_new1","TA"]

{"sheet":"mobilome_COGs","index":1,"n_rows":109,"n_cols":2,"rows_kept":109,"flags":["formulas_cached_only"]}
["COG","COG definition"]
["COG0582","Integrase "]
["COG0675","Transposase"]
["COG1511","Membrane protein related to phage infection protein"]
["COG1662","Transposase and inactivated derivatives, IS1 family "]
["COG1783","Phage terminase large subunit "]
["COG1842","Phage shock protein A"]
["COG1943","Transposase"]
["COG1961","Site-specific recombinase, DNA invertase Pin homolog "]
["COG1983","Phage shock protein C"]
["COG2369","Uncharacterized protein, homolog of phage Mu protein gp30 "]
["COG2452","Predicted site-specific integrase-resolvase "]
["COG2801","Transposase"]
["COG2826","Transposase and inactivated derivatives, IS30 family "]
["COG2842","Bacteriophage DNA transposition protein"]
["COG2946","Putative phage replication protein RstA "]
["COG2963","Transposase"]
["COG3030","Protein affecting phage T7 exclusion by the F plasmid "]
["COG3039","Transposase and inactivated derivatives, IS5 family "]
["COG3293","Transposase"]
["COG3299","Uncharacterized homolog of phage Mu protein gp47 "]
["COG3316","Transposase"]
["COG3328","Transposase"]
["COG3335","Transposase"]
["COG3378","Phage associated DNA primase"]
["COG3385","Transposase"]
["COG3415","Transposase"]
["COG3436","Transposase"]
["COG3464","Transposase"]
["COG3466","Putative transposon-encoded protein "]
["COG3497","Phage tail sheath protein FI "]
["COG3498","Phage tail tube protein FII "]
["COG3499","Phage protein U "]
["COG3500","Phage protein D "]
["COG3547","Transposase"]
["COG3561","Phage anti-repressor protein "]
["COG3600","Uncharacterized phage-associated protein "]
["COG3617","Prophage antirepressor "]
["COG3628","Phage baseplate assembly protein W "]
["COG3645","Uncharacterized phage-encoded protein "]
["COG3646","Phage related anti-repressor protein"]
["COG3666","Transposase"]
["COG3676","Transposase"]
["COG3677","Transposase"]
["COG3728","Phage terminase, small subunit "]
["COG3740","Phage head maturation protease "]
["COG3747","Phage terminase, small subunit "]
["COG3772","Phage-related lysozyme (muraminidase) "]
["COG3941","Mu-like prophage protein "]
["COG3948","Phage-related baseplate assembly protein "]
["COG4195","Phage-related replication protein "]
["COG4197","Uncharacterized protein conserved in bacteria, prophage-related "]
["COG4220","Phage DNA packaging protein, Nu1 subunit of terminase "]
["COG4228","Mu-like prophage DNA circulation protein "]
["COG4373","Mu-like prophage FluMu protein gp28 "]
["COG4379","Mu-like prophage tail protein gpP "]
["COG4381","Mu-like prophage protein gp46 "]
["COG4382","Mu-like prophage protein gp16 "]
["COG4383","Mu-like prophage protein gp29 "]
["COG4384","Mu-like prophage protein gp45 "]
["COG4385","Bacteriophage P2-related tail formation protein "]
["COG4386","Mu-like prophage tail sheath protein gpL "]
["COG4387","Mu-like prophage protein gp36 "]
["COG4388","Mu-like prophage I protein "]
["COG4389","Site-specific recombinase "]
["COG4396","Mu-like prophage host-nuclease inhibitor protein Gam "]
["COG4397","Mu-like prophage major head subunit gpT "]
["COG4416","Mu-like prophage protein Com "]
["COG4422","Bacteriophage protein gp37 "]
["COG4518","Mu-like prophage FluMu protein gp41 "]
["COG4540","Phage P2 baseplate assembly protein gpV "]
["COG4584","Transposase"]
["COG4626","Phage terminase, large subunit "]
["COG4644","Transposase and inactivated derivatives, TnpA family "]
["COG4653","Predicted phage phi-C31 gp36 major capsid-like protein "]
["COG4672","Phage-related protein "]
["COG4679","Phage-related protein "]
["COG4695","Phage portal protein"]
["COG4718","Phage-related protein "]
["COG4722","Phage-related putative tail protein "]
["COG4723","Phage-related protein, tail component "]
["COG4733","Phage-related protein, tail component "]
["COG4824","Phage-related holin (Lysis protein) "]
["COG4926","Phage-associated ATPase "]
["COG4973","Site-specific recombinase XerC "]
["COG4974","Site-specific recombinase XerD "]
["COG5003","Mu-like prophage protein gp37 "]
["COG5004","P2-like prophage tail protein X "]
["COG5005","Mu-like prophage protein gpG "]
["COG5280","Phage-related minor tail protein "]
["COG5281","Phage-related minor tail protein "]
["COG5283","Phage-related tail protein "]
["COG5301","Phage-related tail fibre protein "]
["COG5362","Phage-related terminase "]
["COG5377","Phage-related protein, endonuclease of lambda exonuclease family"]
["COG5412","Phage-related protein "]
["COG5421","Transposase "]
["COG5433","Transposase "]
["COG5511","Bacteriophage capsid protein "]
["COG5518","Bacteriophage capsid portal protein "]
["COG5525","Bacteriophage tail assembly protein "]
["COG5527","Protein involved in initiation of plasmid replication "]
["COG5534","Plasmid replication initiator protein "]
["COG5558","Transposase "]
["COG5562","Phage envelope protein "]
["COG5565","Bacteriophage terminase large (ATPase) subunit and inactivated derivatives "]
["COG5614","Bacteriophage head-tail adaptor "]
["COG5655","Plasmid rolling circle replication initiator protein and truncated derivatives "]
["COG5659","FOG: Transposase "]

{"sheet":"Sheet3","index":2,"n_rows":0,"n_cols":0,"rows_kept":0,"flags":["formulas_cached_only"]}