{"text_format":"3","workbook":"xls","n_sheets":2,"sheets":["RPC34_representatives","Genomic Neighborhoods"],"not_rendered":{"external_links":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"RPC34_representatives","index":0,"n_rows":73,"n_cols":4,"rows_kept":73,"flags":["formulas_cached_only"]}
["GI number","Organisms",null,"Clusters by similarity"]
[]
["Archaeal RPC34 orthologs"]
[229584758,"Sulfolobus islandicus M.16.27",null,1]
[229582192,"Sulfolobus islandicus Y.N.15.51",null,1]
[229579057,"Sulfolobus islandicus Y.G.57.14",null,1]
[227830242,"Sulfolobus islandicus L.S.2.15",null,1]
[227827555,"Sulfolobus islandicus M.14.25",null,1]
[15921534,"Sulfolobus tokodaii str. 7"]
[70607100,"Sulfolobus acidocaldarius DSM 639"]
[15897825,"Sulfolobus solfataricus P2",null,1]
[146304490,"Metallosphaera sedula DSM 5348"]
[119719287,"Thermofilum pendens Hrk 5"]
[171186013,"Thermoproteus neutrophilus V24Sta",null,3]
[126460340,"Pyrobaculum calidifontis JCM 11548"]
[145591943,"Pyrobaculum arsenaticum DSM 13514",null,4]
[119872086,"Pyrobaculum islandicum DSM 4184",null,3]
[18313992,"Pyrobaculum aerophilum str. IM2",null,4]
[159040723,"Caldivirga maquilingensis IC-167"]
[218883343,"Desulfurococcus kamchatkensis 1221n"]
[156937008,"Ignicoccus hospitalis KIN4/I"]
[118431194,"Aeropyrum pernix K1"]
[124027350,"Hyperthermus butylicus DSM 5456"]
[126466142,"Staphylothermus marinus F1"]
[161528904,"Nitrosopumilus maritimus SCM1"]
[118575757,"Cenarchaeum symbiosum A"]
[167042176,"uncultured marine crenarchaeote HF4000_ANIW93H17",null,2]
[167044323,"uncultured marine crenarchaeote HF4000_APKG6B14",null,2]
[222479227,"Halorubrum lacusprofundi ATCC 49239"]
[110667478,"Haloquadratum walsbyi DSM 16790"]
[55377680,"Haloarcula marismortui ATCC 43049"]
[15790170,"Halobacterium sp. NRC-1",null,5]
[169235898,"Halobacterium salinarum R1",null,5]
[76802023,"Natronomonas pharaonis DSM 2160"]
[227879940,"Halogeometricum borinquense DSM 11551"]
[227390426,"Halomicrobium mukohataei DSM 12286"]
[227386880,"Halorhabdus utahensis DSM 12940"]
[224822135,"Natrialba magadii ATCC 43099"]
[88602492,"Methanospirillum hungatei JF-1"]
[124485151,"Methanocorpusculum labreanum Z"]
[154151156,"Candidatus Methanoregula boonei 6A8"]
[219852144,"Candidatus Methanosphaerula palustris E1-9c"]
[126179511,"Methanoculleus marisnigri JR1"]
[21228486,"Methanosarcina mazei Go1"]
[20090274,"Methanosarcina acetivorans C2A"]
[73671031,"Methanosarcina barkeri str. Fusaro"]
[91772245,"Methanococcoides burtonii DSM 6242"]
[116753459,"Methanosaeta thermophila PT"]
[11497975,"Archaeoglobus fulgidus DSM 4304"]
[147919072,"uncultured methanogenic archaeon RC-I"]
[]
["Eukaryotic RPC34 representatives"]
[196007462,"Trichoplax adhaerens"]
[221105315,"Hydra magnipapillata"]
[198424749,"Ciona intestinalis"]
[33598952,"Homo sapiens"]
[115468826,"Oryza sativa (japonica cultivar-group)"]
[24648960,"Drosophila melanogaster"]
[118352502,"Tetrahymena thermophila"]
[15237811,"Arabidopsis thaliana"]
[66824061,"Dictyostelium discoideum AX4"]
[19075898,"Schizosaccharomyces pombe"]
[]
["Bacterial and archaeal MarR representative"]
[15896901,"Clostridium acetobutylicum ATCC 824"]
[20089988,"Methanosarcina acetivorans C2A"]
[219852062,"Candidatus Methanosphaerula palustris E1-9c"]
[23098701,"Oceanobacillus iheyensis HTE831"]
[16081123,"Bacillus subtilis subsp. subtilis str. 168"]
[160901504,"Petrotoga mobilis SJ95"]
[15672724,"Lactococcus lactis subsp. lactis Il1403"]
[28373542,"PDB entry 1LJ9 (Enterococcus faecalis)"]
[188595948,"PDB entry 3BPX (Methanobacterium thermoautotrophicum)"]

{"sheet":"Genomic Neighborhoods","index":1,"n_rows":188,"n_cols":8,"rows_kept":188,"flags":["formulas_cached_only"]}
["organism","position","strand","length (amino acids)","refseq","Locus_tag","COG","Annotation"]
["Ignicoccus hospitalis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Ignicoccus_hospitalis_KIN4_I/NC_009776.ptt"]
[null," 187888..188598","+",236,156937007,"Igni_0212","COG1180O","hypothetical protein"]
[null," 188552..189037","-",161,156937008,"Igni_0213","COG1522K","hypothetical protein"]
[null," 189083..189391","-",102,156937009,"Igni_0214","-","hypothetical protein"]
[null," 189454..190242","-",262,156937010,"Igni_0215","COG0169E","shikimate dehydrogenase"]
[]
["Aeropyrum pernix","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Aeropyrum_pernix/NC_000854.ptt"]
[null,"515091..516314","+",407,118431193,"APE_0782.1","COG1867J","N(2),N(2)-dimethylguanosine tRNA methyltransferase"]
[null,"516322..516687","-",121,118431194,"APE_0784.1","COG1522K","hypothetical protein"]
[]
["Archaeoglobus fulgidus","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Archaeoglobus_fulgidus/NC_000917.ptt"]
[null,"327901..328128","+",75,11497974,"AF0362","COG1958K","snRNP, putative"]
[null,"328125..328511","+",128,11497975,"AF0363","COG1522K","transcriptional repressor (cinR)"]
[null,"328546..330411","+",621,11497976,"AF0364","COG1067O","ATP-dependent protease Lon"]
[]
["Caldivirga maquilingensis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Caldivirga_maquilingensis_IC-167/NC_009954.ptt"]
[null,"160138..160575","-",145,159040723,"Cmaq_0135","COG1522K","MarR family transcriptional regulator"]
[null,"160628..162376","-",582,159040724,"Cmaq_0136","COG0143J","methionyl-tRNA synthetase"]
[]
["Desulfurococcus kamchatkensis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Desulfurococcus_kamchatkensis_1221n/NC_011766.ptt"]
[null,"27831..28286","+",151,218883343,"DKAM_0029","COG1522K","Putative transcriptional regulator, AsnC family"]
[]
["Hyperthermus butylicus","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Hyperthermus_butylicus/NC_008818.ptt"]
[null,"440930..441280","+",116,124027348,"Hbut_0457","COG3277J","RNA binding protein, Gar1-type"]
[null,"441277..442170","+",297,124027349,"Hbut_0458","COG1405K","transcription initiation factor IIB"]
[null,"442410..442844","+",144,124027350,"Hbut_0459","COG1522K","hypothetical protein"]
[]
["Halobacterium sp.","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Halobacterium_sp/NC_002607.ptt"]
[null,"819545..820756","-",403,16554483,"VNG1070Gm","COG0578C","glycerol-3-phosphate dehydrogenase chain A"]
[null,"820841..821197","-",118,15790170,"VNG1071G","COG1522K","CinR"]
[null,"821245..822726","-",493,15790171,"VNG1073G","COG0318IQ","Lfl1"]
[]
["Haloarcula marismortui","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Haloarcula_marismortui_ATCC_43049/NC_006396.ptt"]
[null,"725445..726506","+",353,55377678,"rrnAC0841","COG0447H","naphthoate synthase"]
[null,"726528..726878","-",116,55377680,"rrnAC0842","COG1522K","transcription repressor CinR"]
[null,"727698..729284","-",528,55377681,"rrnAC0843","COG0318IQ","O-succinylbenzoic acid-CoA ligase"]
[]
["Haloquadratum walsbyi","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Haloquadratum_walsbyi/NC_008212.ptt"]
[null,"635561..635911","-",116,110667478,"HQ1517A","COG1522K","transcription regulator / transcriptional repressor CinR"]
[]
["Halorubrum laucsprofundi","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Halorubrum_lacusprofundi_ATCC_49239/NC_012029.ptt"]
[null,"797735..798088","-",117,222479227,"Hlac_0795","COG1522K","hypothetical protein"]
[null,"798145..798978","-",277,222479228,"Hlac_0796","COG3332S","protein of unknown function DUF833"]
[]
["Natromnomonas pharaonis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Natronomonas_pharaonis/NC_007426.ptt"]
[null,"1336496..1336852","-",118,76802023,"NP2762A","COG1522K","hypothetical protein"]
[null,"1336917..1337654","-",245,76802024,"NP2764A","COG3332S","hypothetical protein"]
[]
["Nitrosopumilus maritimus","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Nitrosopumilus_maritimus_SCM1/NC_010085.ptt"]
[null,"1276580..1277728","+",382,161528902,"Nmar_1394","COG1867J","tRNA (guanine-N(2)-)-methyltransferase"]
[null,"1277718..1278311","-",197,161528903,"Nmar_1395","COG0293J","ribosomal RNA methyltransferase RrmJ/FtsJ"]
[null,"1278308..1279183","-",291,161528904,"Nmar_1396","COG1522K","hypothetical protein"]
[null,"1279233..1279709","-",158,161528905,"Nmar_1397","-","hypothetical protein"]
[]
["Sulfolobus solfataricus","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Sulfolobus_solfataricus/NC_002754.ptt"]
[null,"800987..802123","+",378,15897824,"SSO0943","COG1867J","N(2),N(2)-dimethylguanosine tRNA methyltransferase"]
[null,"802115..802492","-",125,15897825,"SSO0944","COG1522K","hypothetical protein"]
[null,"802675..803556","-",293,15897826,"SSO0946","COG1405K","transcription initiation factor IIB"]
[]
["Sulfolobus acidocaldarius","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Sulfolobus_acidocaldarius_DSM_639/NC_007181.ptt"]
[null,"1142977..1143249","+",90,70607098,"Saci_1340","COG3277J","H/ACA RNA-protein complex component Gar1"]
[null,"1143246..1144121","+",291,70607099,"Saci_1341","COG1405K","transcription initiation factor B"]
[null,"1144143..1144559","+",138,70607100,"Saci_1342","COG1522K","hypothetical protein"]
[]
["Sulfolobus tokodaii","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Sulfolobus_tokodaii/NC_003106.ptt"]
[]
[null,"1269739..1270116","-",125,15921534,"ST1270","COG1522K","hypothetical protein"]
[null,"1270177..1271064","-",295,15921535,"ST1271","COG1405K","transcription initiation factor IIB"]
[null,"1271052..1271354","-",100,15921536,"ST1272","COG3277J","H/ACA RNA-protein complex component Gar1"]
[]
["Metallosphaera sedula","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Metallosphaera_sedula_DSM_5348/NC_009440.ptt"]
[]
[null,"1664402..1665550","+",382,146304489,"Msed_1726","COG1867J","N(2),N(2)-dimethylguanosine tRNA methyltransferase"]
[null,"1665595..1665969","-",124,146304490,"Msed_1727","COG1522K","hypothetical protein"]
[null,"1666330..1666860","+",176,146304491,"Msed_1728","COG2101K","transcription factor"]
[]
["Pyrobaculum islandicum","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pyrobaculum_islandicum_DSM_4184/NC_008701.ptt"]
[null,"524927..525367","-",146,119872083,"Pisl_0569","-","hypothetical protein"]
[null,"525383..526639","-",418,119872084,"Pisl_0570","COG1746J","tRNA CCA-pyrophosphorylase"]
[null,"526636..527199","-",187,119872085,"Pisl_0571","COG1514J","2'-5' RNA ligase"]
[null,"527196..527636","-",146,119872086,"Pisl_0572","COG1522K","MarR family transcriptional regulator"]
[null,"527673..528569","-",298,119872087,"Pisl_0573","COG1405K","zinc finger TFIIB-type domain-containing protein"]
[null,"528566..528811","-",81,119872088,"Pisl_0574","COG3277J","H/ACA RNA-protein complex component Gar1"]
[]
["Pyrobaculum aerophilum","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pyrobaculum_aerophilum/NC_003364.ptt"]
[null,"1990603..1991025","-",140,18313989,"PAE3324","-","hypothetical protein"]
[null,"1991088..1992347","-",419,18313990,"PAE3325","COG1746J","tRNA CCA-pyrophosphorylase"]
[null,"1992344..1992907","-",187,18313991,"PAE3326","COG1514J","hypothetical protein"]
[null,"1992904..1993341","-",145,18313992,"PAE3327","COG1522K","DNA binding transcriptional repressor, conjectural"]
[null,"1993374..1994270","-",298,18313993,"PAE3329","COG1405K","transcription initiation factor IIB (TFIIB)"]
[null,"1994267..1994515","-",82,161485619,"PAE3330","COG3277J","H/ACA RNA-protein complex component Gar1"]
[]
["Pyrobaculum calidifontis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pyrobaculum_calidifontis_JCM_11548/NC_009073.ptt"]
[null,"1614320..1614568","+",82,126460338,"Pcal_1733","COG3277J","H/ACA RNA-protein complex component Gar1"]
[null,"1614565..1615461","+",298,126460339,"Pcal_1734","COG1405K","zinc finger TFIIB-type domain-containing protein"]
[null,"1615484..1615933","+",149,126460340,"Pcal_1735","COG1522K","MarR family transcriptional regulator"]
[null,"1615930..1616490","+",186,126460341,"Pcal_1736","COG1514J","2'-5' RNA ligase"]
[null,"1616487..1617743","+",418,126460342,"Pcal_1737","COG1746J","tRNA CCA-pyrophosphorylase"]
[null,"1617780..1618199","+",139,126460343,"Pcal_1738","COG0056C","hypothetical protein"]
[]
["Thermofilum pendens","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Thermofilum_pendens_Hrk_5/NC_008698.ptt"]
[null,"334038..334748","-",236,119719284,"Tpen_0367","COG2112T","putative serine/threonine protein kinase"]
[null,"334772..336175","-",467,119719285,"Tpen_0368","COG1746J","tRNA CCA-pyrophosphorylase"]
[null,"336162..336725","-",187,119719286,"Tpen_0369","COG1514J","2'-5' RNA ligase"]
[null,"336718..337131","-",137,119719287,"Tpen_0370","COG1522K","hypothetical protein"]
[]
["Thermoproteus neutrophilus","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Thermoproteus_neutrophilus_V24Sta/NC_010525.ptt"]
[null,"1383334..1383753","-",139,171186010,"Tneu_1559","-","hypothetical protein"]
[null,"1383950..1385197","-",415,171186011,"Tneu_1560","COG1746J","tRNA CCA-pyrophosphorylase"]
[null,"1385194..1385754","-",186,171186012,"Tneu_1561","COG1514J","2'-5' RNA ligase"]
[null,"1385751..1386191","-",146,171186013,"Tneu_1562","COG1522K","MarR family transcriptional regulator"]
[null,"1386226..1387122","-",298,171186014,"Tneu_1563","COG1405K","zinc finger TFIIB-type domain-containing protein"]
[null,"1387119..1387364","-",81,171186015,"Tneu_1564","COG3277J","H/ACA RNA-protein complex component Gar1"]
[]
["Staphylothermus marinus","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Staphylothermus_marinus_F1/NC_009033.ptt"]
[null,"1213717..1214004","+",95,126466139,"Smar_1248","COG1400U","signal recognition particle protein Srp19"]
[null,"1214169..1214510","+",113,126466140,"Smar_1249","COG3277J","snoRNP protein GAR1"]
[null,"1214513..1215397","+",294,126466141,"Smar_1250","COG1405K","zinc finger TFIIB-type domain-containing protein"]
[null,"1215549..1215971","+",140,126466142,"Smar_1251","COG1522K","AsnC family transcriptional regulator"]
[null,"1215958..1217133","-",391,126466143,"Smar_1252","COG1867J","N(2),N(2)-dimethylguanosine tRNA methyltransferase"]
[]
["Methanospirillum hungatei","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanospirillum_hungatei_JF-1/NC_007796.ptt"]
[null,"1373081..1373449","-",122,88602492,"Mhun_1204","COG1522K","hypothetical protein"]
[null,"1373458..1373697","-",79,88602493,"Mhun_1205","COG1958K","like-Sm ribonucleoprotein, core"]
[null,"1373758..1374693","-",311,88602494,"Mhun_1206","COG0158G","inositol phosphatase/fructose-1,6-bisphosphatase"]
[]
["Methanocorpusculum labreanum","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanocorpusculum_labreanum_Z/NC_008942.ptt"]
[null,"305381..306871","-",496,124485150,"Mlab_0323","COG4065S","cobalt transport protein"]
[null,"306939..307301","-",120,124485151,"Mlab_0324","COG1522K","hypothetical protein"]
[null,"307304..307537","-",77,124485152,"Mlab_0325","COG1958K","hypothetical protein"]
[]
["Candidatus Methanoregula boonei","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Candidatus_Methanoregula_boonei_6A8/NC_009712.ptt"]
[null,"1688353..1688589","+",78,154151155,"Mboo_1613","COG1958K","like-Sm ribonucleoprotein, core"]
[null,"1688611..1688952","+",113,154151156,"Mboo_1614","COG1522K","hypothetical protein"]
[null,"1688998..1689528","+",176,154151157,"Mboo_1615","-","hypothetical protein"]
[]
["Methanosphaerula palustris","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Candidatus_Methanosphaerula_palustris_E1_9c/NC_011832.ptt"]
[null,"1593000..1593338","-",112,219852144,"Mpal_1540","COG1522K","hypothetical protein"]
[null,"1593349..1593582","-",77,219852145,"Mpal_1541","COG1958K","Like-Sm ribonucleoprotein core"]
[]
["Methanoculleus marisnigri","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanoculleus_marisnigri_JR1/NC_009051.ptt"]
[null,"1570442..1570678","+",78,126179510,"Memar_1564","COG1958K","like-Sm ribonucleoprotein, core"]
[null,"1570684..1571022","+",112,126179511,"Memar_1565","COG1522K","hypothetical protein"]
[]
["Methanosarcina mazei","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanosarcina_mazei/NC_003901.ptt"]
[]
[null,"2841298..2841576","+",92,21228484,"MM_2382","-","hypothetical protein"]
[null,"2841563..2841787","+",74,21228485,"MM_2383","COG1958K","small nuclear riboprotein-like protein"]
[null,"2841817..2842242","+",141,21228486,"MM_2384","COG1522K","hypothetical protein"]
[]
["Methanosarcina acetivorans","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanosarcina_acetivorans/NC_003552.ptt"]
[null,"1681001..1681225","+",74,20090273,"MA1413","COG1958K","Sm protein"]
[null,"1681253..1681663","+",136,20090274,"MA1414","COG1522K","hypothetical protein"]
[]
["Methanosarcina barkeri","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanosarcina_barkeri_fusaro/NC_007355.ptt"]
[null,"4617663..4617887","+",74,73671030,"Mbar_A3597","COG1958K","small nuclear riboprotein-like protein"]
[null,"4617920..4618339","+",139,73671031,"Mbar_A3598","COG1522K","hypothetical protein"]
[]
["Methanococcoides burtonii","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanococcoides_burtonii_DSM_6242/NC_007955.ptt"]
[null,"157947..158297","-",116,91772245,"Mbur_0176","COG1522K"]
[null,"158321..158518","-",65,91772246,"Mbur_0177","COG1958K","small ribonucleoprotein"]
[]
["Methanosaeta thermophila","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Methanosaeta_thermophila_PT/NC_008553.ptt"]
[null,"127691..128059","-",122,116753459,"Mthe_0137","COG1522K","hypothetical protein"]
[null,"128079..128303","-",74,116753460,"Mthe_0138","COG1958K","like-Sm ribonucleoprotein, core"]
[]
["Uncultured methanogenic archaeon RC-I","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/uncultured_methanogenic_archaeon_RC-I/NC_009464.ptt"]
[null,"416268..416492","+",74,147919071,"RRC101","COG1958K","small nuclear riboprotein-like protein"]
[null,"416500..417024","+",174,147919072,"RRC100","COG1522K","hypothetical protein"]
[]
["Cenarchaeum symbiosum","http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=Retrieve&dopt=Protein+Table&list_uids=23436 (Cenarchaeum symbiosum)"]
[null,"490779..491369","-",null,118575756,"CENSYa_0562","COG0293","23S rRNA methylase "]
[null,"491366..492454","-",null,118575757,"CENSYa_0563","COG1522K","transcriptional regulator "]
[]
["Halogeometricum boriquense","http://www.ncbi.nlm.nih.gov/nuccore/227846225 (Halogeometricum borinquense DSM 11551)"]
[null,"562633..563379","+",null,227846818,"HborDRAFT_0593","COG3332","hypothetical protein"]
[null,"563405..563758","+",null,227846819,"HborDRAFT_0594","COG1522K","hypothetical protein"]
[]
["Halomicrobium mukohataei","http://www.ncbi.nlm.nih.gov/nuccore/227388882 (Halomicrobium mukohataei DSM 12286)"]
[null,"1487067..1487417","-",null,227390426,"HmukDRAFT_15450","COG1522K","hypothetical protein"]
[null,"1487445..1488179","-",null,227390427,"HmukDRAFT_15460","COG3332","hypothetical protein"]
[]
["Halorhabdus utahensis","http://www.ncbi.nlm.nih.gov/nuccore/227385800 (Halorhabdus utahensis DSM 12940)"]
[null,"1108189..1108539","-",null,227386880,"HutaDRAFT_10800","COG1522K","hypothetical protein"]
[]
["Natrialba magadii","http://www.ncbi.nlm.nih.gov/nuccore/224821763 (Natrialba magadii ATCC 43099)"]
[null,"387306..387656","-",null,224822135,"NmagDRAFT_1913","COG1522K","transcription repressor CinR"]