Notations: Architecture ID 1 2 3.1 3.2 3.3 4.1 4.2 4.3 5 6.1.1 6.1.2 6.2.1 6.2.2 6.3.1 6.3.2 7 8 9 10 Architecture type intronic antisense Bi-directional 1k distant Bi-directional 5k-distant Bi-directional 10k-distant Downstream-associated 1k-distant Downstream-associated 5k-distant Downstream-associated 10k-distant promoter-associated intergenic 1k upstream intergenic 1k downstream intergenic 5k upstream intergenic 5k downstream intergenic 10k upstream intergenic 10k downstream antisense head-to-head antisense tail-to-tail antisense –exonic antisense -imbedded Expression magnitude dynamic mode type 0 1 2 3 4 5 6 7 Expression magnitude dynamic mode ID high expression by 6h high expression by 24h high expression by 120h transiently high during 6-24h low expression by 6h low expression by 24h low expression by 120h transiently low during 6-24h Pattern ID 0 1 10 101 11 111 repression by 6h activation by 120h transient activation at 120h transient repression at 120h activation by 24h activation by 6h Genebank ID Refseq ID Architecture class Accession number Associated protein gene symbol Associated protein Affymetrix probe ID Expression rate dynamic mode Kendall's correlation with protein expression Expression magnitude dynamic mode BC020913 NM_005011 1 HIT000090300 NRF1 204652_s_at 111 0 2 NR_002960 NM_030752 1 HIT000383005 TCP1 208778_s_at 111 -0.6666666667 2 AK054798 NM_006648 1 HIT000011412 WNK2 1562026_at 1 -1 4 AK125692 NM_144648 1 HIT000045565 N/A 244710_at 1 -0.3333333333 4 AF009285 NM_003966 1 HIT000061985 SEMA5A 205405_at 0 -0.6666666667 4 AF056426 NM_003966 1 HIT000064701 SEMA5A 205405_at 0 -0.6666666667 4 AK093159 NM_015215 1 HIT000018026 CAMTA1 1555370_a_at 0 -0.6666666667 6 AK130252 NM_003966 1 HIT000220274 SEMA5A 205405_at 0 -0.6666666667 4 BC070392 NM_001430 1 HIT000264347 EPAS1 200879_s_at 0 -1 5 U52831 NM_003966 1 HIT000220274 SEMA5A 205405_at 0 -0.6666666667 4 AF009276 NM_003966 1 HIT000061976 SEMA5A 205405_at 10 -0.6666666667 4 AF009293 NM_003966 1 HIT000061993 SEMA5A 205405_at 10 -1 4 AK123666 NM_018383 1 HIT000043539 WDR33 223146_at 10 -0.3333333333 4 AK130601 NM_003966 1 HIT000049872 SEMA5A 205405_at 10 -1 4 AK055543 NM_018099 2 HIT000012157 MLSTD1 220615_s_at 1 0 5 BC015609 NM_021004 2 HIT000088749 DHRS4 218021_at 101 -0.6666666667 2 AF009302 NM_003966 2 HIT000062002 SEMA5A 205405_at 0 -0.6666666667 4 AF086011 NM_181798 2 HIT000066890 KCNQ1 204487_s_at 0 -0.6666666667 5 U12028 NM_003966 2 HIT000218067 SEMA5A 205405_at 0 -0.6666666667 4 BC007733 NM_181798 2 HIT000086900 KCNQ1 204487_s_at 10 -0.6666666667 4 BC041861 NM_145735 2 HIT000096905 ARHGEF7 229642_at 10 -0.6666666667 4 AK096262 NM_002014 3.1 HIT000021117 FKBP4 200895_s_at 111 -1 2 BC027846 NM_152542 3.1 HIT000091380 PPM1K 235061_at 1 -0.6666666667 4 AF009297 NM_199133 3.2 HIT000061997 LOC134145 225670_at 0 -1 5 BC025336 NM_018941 3.2 HIT000091044 CLN8 219340_s_at 10 -0.3333333333 6 M29310 NM_003818 3.3 HIT000195311 CDS2 212862_at 0 -0.6666666667 5 AF086071 NM_016391 4.2 HIT000066950 HSPC111 214011_s_at 111 -0.6666666667 1 BC045672 NM_002370 4.2 HIT000098110 MAGOH 210092_at 111 -1 2 NR_002960 NM_005891 4.2 HIT000383005 ACAT2 209608_s_at 111 -0.6666666667 2 BC017993 NM_003619 4.2 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 BC039555 NM_003619 4.2 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 CR625561 NM_003619 4.2 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 NR_003584 NM_003619 4.2 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 AK025276 NM_001129 4.2 HIT000008550 AEBP1 201792_at 0 -1 5 CR613601 NM_021196 4.2 HIT000292796 SLC4A5 221723_s_at 0 -0.3333333333 5 NR_002444 NM_001006605 4.2 HIT000383116 FAM69A 216044_x_at 0 -1 4 NR_002984 NM_002436 4.2 HIT000382995 MPP1 202974_at 0 -1 4 AK000998 NM_017801 4.3 HIT000003472 CMTM6 217947_at 0 -1 5 AK056806 NM_144648 06/01/01 HIT000013420 N/A 244710_at 1 -0.3333333333 7 BC027846 NM_152542 06/01/01 HIT000091380 PPM1K 235061_at 1 -0.6666666667 4 AK096262 NM_002014 06/01/02 HIT000021117 FKBP4 200895_s_at 111 -1 2 AY701053 NM_003362 06/02/01 HIT000257292 UNG 202330_s_at 111 -0.6666666667 1 NR_002960 NM_005891 06/02/01 HIT000383005 ACAT2 209608_s_at 111 -0.6666666667 2 AF009297 NM_199133 06/02/01 HIT000061997 LOC134145 225670_at 0 -1 5 AK025276 NM_001129 06/02/01 HIT000008550 AEBP1 201792_at 0 -1 5 AF086071 NM_016391 06/02/02 HIT000066950 HSPC111 214011_s_at 111 -0.6666666667 1 AK096580 NM_000373 06/02/02 HIT000021435 UMPS 202706_s_at 111 -0.6666666667 0 BC008287 NM_021974 06/02/02 HIT000087022 POLR2F 209511_at 111 -0.6666666667 2 BC045672 NM_002370 06/02/02 HIT000098110 MAGOH 210092_at 111 -1 2 BX647159 NM_002657 06/02/02 HIT000055806 PLAGL2 202924_s_at 111 -0.6666666667 1 CR625252 NM_000373 06/02/02 HIT000021435 UMPS 202706_s_at 111 -0.6666666667 0 BC017993 NM_003619 06/02/02 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 BC039555 NM_003619 06/02/02 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 CR625561 NM_003619 06/02/02 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 NR_003584 NM_003619 06/02/02 HIT000089516 PRSS12 205515_at 1 -0.6666666667 5 CR613601 NM_021196 06/02/02 HIT000292796 SLC4A5 221723_s_at 0 -0.3333333333 5 NR_002444 NM_001006605 06/02/02 HIT000383116 FAM69A 216044_x_at 0 -1 4 NR_002984 NM_002436 06/02/02 HIT000382995 MPP1 202974_at 0 -1 4 BC025336 NM_018941 06/02/02 HIT000091044 CLN8 219340_s_at 10 -0.3333333333 6 AF086549 NM_138468 06/03/01 HIT000067428 ICA1L 230454_at 1 -0.3333333333 4 AK000998 NM_017801 06/03/02 HIT000003472 CMTM6 217947_at 0 -1 5 BC067277 NM_007101 06/03/02 HIT000262522 SARDH 210063_at 0 -0.6666666667 4 M29310 NM_003818 06/03/02 HIT000195311 CDS2 212862_at 0 -0.6666666667 5 BC031965 NM_001268 7 HIT000092501 RCBTB2 204759_at 10 -0.6666666667 4 BC064478 NM_012241 8 HIT000261398 SIRT5 219185_at 1 -0.6666666667 4 CR601575 NM_032801 8 HIT000280770 JAM3 231720_s_at 0 -0.6666666667 5 AB002443 NM_021649 9 HIT000057987 TICAM2 239431_at 0 -0.6666666667 4 BC111519 NM_030626 9 HIT000339932 N/A 228886_at 10 -0.6666666667 4