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["# Rep1-dependent genes were selected as those showing an induction at least two fold lower that wild type cells in at least one time point between 1 and 3 hours"]
["# Annotations are from GeneDB (www.genedb.org)"]
[]
["Rep1p-dependent early genes"]
["Systematic name","Common name","Description"]
["SPAC1002.02","mug31","Predicted nucleoporin"]
["SPAC1002.06c","mug18;bqt2;rec23","Bouquet formation protein"]
["SPCC1620.04c","mug55","Cdc20/Fizzy family WD repeat protein    "]
["SPBC1718.02","hop1","Linear element associated protein Hop1"]
["SPAC17H9.18c",null,"Dubious, in the UTR of cdt2"]
["SPAC1952.15c","mug6;rec24","Meiotic recombination protein"]
["SPAC19G12.16c","adg2","GPI anchored protein"]
["SPAC22H10.13","zym1","Metallothionein "]
["SPBC25H2.14",null,"Member of the UNC-50 family"]
["SPBC28F2.07","sfr1;dds20;mug13","Swi five-dependent recombination repair protein"]
["SPCC290.04","ams2","GATA-type protein involved in chromosome segregation"]
["SPBC29A10.02","mug12;spo5","RNA-binding protein"]
["SPBC36B7.06c",null,"Sequence orphan"]
["SPBC409.08",null,"Predicted spermine family transporter"]
["SPCC553.07c","mug40","DinB translesion DNA repair polymerase    "]
["SPAC57A10.06","mug15","Sequence orphan"]
["SPCC584.12","mug42","Sequence orphan"]
["SPBC6B1.05c",null,"Ubiquitin-like conjugating enzyme"]
["SPBC800.02","whi5","Predicted cell cycle transcriptional repressor"]
["SPBC14C8.07c","cdc18","MCM loader"]
["SPBC25H2.13c","cdc20;pol2;Pol-epsilon","DNA polymerase epsilon"]
["SPAC17H9.19c","sev1;cdt2","WD repeat protein required for mitotic and meiotic DNA replication"]
["SPAPB2B4.03","cyc17;cig2","G1/S-phase cyclin"]
["SPBC1105.17","sim2;cnp1","CENP-A-like, histone H3 variant specific to inner centromeres"]
["SPCC550.13","rad35;him1;dfp1","Regulatory subunit of the Hsk1p-Dfp1p kinase involved in G1 to S phase transition"]
["SPAC8E11.03c","dmc1;spdmc1;dmp1","RecA family ATPase, involved in meiotic recombination"]
["SPBC1198.14c","fbp1","Fructose-1,6-bisphosphatase"]
["SPCC548.07c","ght1","Hexose transporter"]
["SPAC22F3.09c","pct1;res2;mcs1","DNA-binding component of the MBF transcriptional activation complex involved in control of START"]
["SPCC1223.12c","meu10","Protein required for proper spore wall formation"]
["SPAC222.15","meu13","Meiosis-specific protein required for homologous chromosome pairing and recombination"]
["SPNCRNA.30","meu20","Non-coding RNA"]
["SPNCRNA.07","meu3","Non-coding RNA"]
["SPAPB1A10.14",null,"F-box protein"]
["SPBC11B10.10c","pi001;pht1","Histone H2A variant"]
["SPCC4E9.01c","rec11","Meiotic cohesin complex subunit Rec11"]
["SPAC17A5.11","spo11;rec12","Protein required for meiotic recombination"]
["SPBC21B10.12","rec6","Protein required for meiotic recombination"]
["SPBC29A10.14","rec8","Meiotic cohesin"]
["SPBC2D10.06","rep1;rec16","Regulator of pre-meiotic DNA synthesis"]
["SPAC644.14c","rhp51;rad51","RecA family recombinase"]
["SPBC119.14","rti1","DNA repair and recombination protein, has similarity to Rad22p"]
["SPAC10F6.09c","psm3;smc3","Subunit of the cohesin complex"]
["SPAC13C5.03","tht1","Nuclear membrane protein involved in karyogamy"]
[]
["Rep1-independent early genes"]
["Systematic name","Common name","Description"]
["SPBC29B5.01","mts1;sss1;atf1;gad7","Transcription factor activated by the Sty1p MAP kinase cascade"]
["SPAC1002.05c","jmj2","Histone demethylase"]
["SPCC11E10.03","mug1","Predicted dynactin complex subunit "]
["SPCC1393.07c","mug4","Sequence orphan"]
["SPAC13A11.03","mug32;mcp7","Protein involved in meiotic recombination"]
["SPCC1739.08c",null,"Short chain dehydrogenase"]
["SPCC1739.10",null,"Conserved hypothetical protein"]
["SPCC1795.09","yps1","Aspartic protease"]
["SPAC17A5.18c","rec25;mug19","Required for meiotic recombination"]
["SPAC1834.09",null,"Conserved fungal protein"]
["SPBC1921.06c","pvg3","Putative beta1,3-galactosyltransferase"]
["SPBC19C7.04c",null,"Conserved fungal protein"]
["SPBC216.02","mug21;mcp5","Cortical anchoring factor for dynein"]
["SPAC22F3.03c","rdh54","ATP-dependent DNA helicase "]
["SPAC22F8.02c","pvg5","Protein required for biosynthesis of pyruvylated galactomannan"]
["SPAC22H12.01c","mug35","Sequence orphan"]
["SPAC27E2.07","pvg2","Protein required for biosynthesis of pyruvylated galactomannans"]
["SPBC2G2.09c","mug17;crs1","Meiosis specific cyclin"]
["SPCC306.05c","ins1","INSIG domain protein"]
["SPBC31E1.01c","mug36","Autophagy associated protein"]
["SPBC31F10.05","mug37","Sequence orphan"]
["SPAC31G5.10","eta2","Myb family transcriptional regulator"]
["SPAC32A11.01","mug8","Conserved hypothetical protein"]
["SPCC338.08","mug38;ctp1","Sequence orphan"]
["SPAC343.09","mug39;ubx3","UBX domain protein"]
["SPBC359.06","mug14","Adducin"]
["SPBC36B7.05c",null,"Phosphatidylinositol(3)-phosphate binding protein"]
["SPCC417.05c","chr2;cfh2","Chitin synthase regulatory factor"]
["SPAC458.04c",null,"Sequence orphan"]
["SPCC4G3.07c","swp1","PHD finger containing protein"]
["SPBC577.05c","rec27;mug41","Meiotic recombination protein"]
["SPAC57A10.04","mug10","Sequence orphan"]
["SPBC582.06c","mcp6;hrs1","Meiosis-specific coiled-coil protein, required for horsetail movement and recombination"]
["SPBC660.16",null,"6-phosphogluconate dehydrogenase"]
["SPAC6C3.05",null,"Sequence orphan"]
["SPAC6G9.13c","mug23;bqt1","Required for telomere clustering at the spindle pole body"]
["SPCC70.09c","mug9","Conserved hypothetical protein"]
["SPCC794.01c",null,"Glucose-6-phosphate dehydrogenase"]
["SPBC336.12c","cdc10","Component of the Mlu1-box binding factor (MBF) transcriptional activation complex involved in the control of START"]
["SPAC1093.06c","dhc1","Cytoplasmic dynein heavy chain, required for nuclear movement and chromosome alignment in meiotic prophase"]
["SPAC1F8.01","ght3","Hexose transporter"]
["SPBC1683.08","ght4","Hexose transporter"]
["SPAC1751.01c","gti1","Protein involved in gluconate transport induction"]
["SPCC4G3.05c","mus81","Holliday junction resolvase subunit that associates with Eme1p"]
["SPAP27G11.08c","meu32;mug11","Sequence orphan"]
["SPBC646.17c","dic1","Dynein intermediate chain"]
["SPBP8B7.04","mug45","Sequence orphan"]
["SPAC25G10.04c","rec10","Meiotic recombination protein"]
["SPBC29A10.04","psm1;smc1","Component of the cohesin complex"]
["SPAC29B12.03","spd1","Ribonucleotide reductase (RNR) inhibitor"]
["SPAC27D7.13c","ssm4","p150-Glued"]
[]
[]
["Incomplete / missing  data in rep1 experiment"]
["Systematic name","Common name","Description"]
["SPCC1753.03c","rec7","Meiotic recombination protein"]
["SPBC1711.14","rec15","Meiotic recombination protein"]
["SPAC14C4.08","mug5","Protein of unknown function"]

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