Clustering data for Drosophila species using non-arm-indexed NGPs and gene set common to all Drosophila and outgroup species (Figure 1b). Format: where, : Encodes presence(1) or absence(0) of a species in this count. Species order is: Dmel,Dyak,Dere,Dana,Dpse,Dvir,Dmoj,Dgri,Agam,Aaeg,Amel,Tcas : Number of species in this cluster (= num. of 1s) : Number of NGPs found in all the corresponding species list (and nowhere else). These are "exclusively shared NGPs" (see manuscript). : Clustering comments. Violation implies that a grouping crosses a previously clustered boundary and is skipped. Species codes correspond to the first letter in their name (or a short version of the name is used). Clustering stops when a binary partitioning is obtained. 000000000001 1 3495 Leaf 000000001000 1 2813 Leaf 000000000010 1 2670 Leaf 000000000100 1 1902 Leaf 111111110000 8 1607 All Flies 000000001100 2 734 Anoph/Aedes 000001110000 3 719 v/m/g 000010000000 1 653 Leaf 000100000000 1 533 Leaf 111110000000 5 441 m/y/e/a/p 111000000000 3 434 m/y/e 000000010000 1 370 Leaf 111100000000 4 273 m/y/e/a 000000100000 1 196 Leaf 111101110000 7 194 Violation 000001000000 1 168 Leaf 000001100000 2 163 v/m 111011110000 7 143 Violation 000000000011 2 141 hbee/beetle 000011110000 4 101 Violation 111111100000 7 96 Violation 000111110000 5 85 Violation 111010000000 4 80 Violation 111111111100 10 77 all flies/anoph+aedes 010000000000 1 75 Leaf 111111111111 12 66 All species 000110000000 2 64 Violation 111111111000 9 64 Violation 000000110000 2 49 Violation 111111010000 7 48 Violation 000001010000 2 47 Violation 111111110100 9 46 Violation 101111110000 7 32 Violation 000000001001 2 31 Violation 000000001101 3 28 Violation 000101110000 4 26 Violation 000000001111 4 26 All outgroups 111110110000 7 25 Violation 000000001010 2 25 Violation 001000000000 1 23 Leaf 111111111101 11 23 Violation 000000001110 3 23 Violation 111111110011 10 21 Violation 101110000000 4 20 Violation 000000001011 3 20 Violation 111111110001 9 20 Violation 100000000000 1 20 Leaf 111111111110 11 19 Violation 111001110000 6 19 Violation 000000000101 2 17 Violation 111111111011 11 16 Violation 101000000000 2 16 m/e 011000000000 2 15 y/e 111101100000 6 14 Violation 000000000110 2 13 Violation 111111111001 10 12 Violation 111011100000 6 11 Violation 110000000000 2 9 m/y 101100000000 3 9 111110010000 6 8 111111110010 9 8 000011100000 3 7 111110001100 7 7 111111111010 10 7 000000000111 3 7 000001110100 4 7 111010110000 6 7 111011010000 6 6 000110110000 4 6 111001100000 5 6 000111100000 4 6 111101111000 8 5 111111101000 8 5 101101110000 6 5 111110100000 6 5 111111000000 6 5 111111110110 10 5 101011110000 6 5 000010010000 2 5 111011111100 9 5 100111110000 6 5 000001111000 4 4 111100010000 5 4 110111110000 7 4 000001111100 5 4 111111110111 11 4 000101100000 3 3 111111101101 10 3 111100100000 5 3 111101110100 8 3 000001110010 4 3 111111100100 8 3 111111101100 9 3 101010000000 3 3 000111111000 6 3 000010000100 2 3 111010100000 5 3 111101010000 6 3 111111110101 10 3 111000110000 5 2 111001111001 8 2 000111110100 6 2 111110001000 6 2 100011110000 5 2 100100000000 2 2 111110111000 8 2 111110000011 7 2 110110000000 4 2 111111010100 8 2 111011111000 8 2 111100110000 6 2 111110000100 6 2 001001110000 4 2 000101111100 6 2 000010110000 3 2 111101110010 8 2 101111100000 6 2 111101111110 10 2 000000011000 2 2 111101110001 8 2 000011111000 5 2 100110000000 3 2 111111101110 10 2 111110011000 7 2 000011110100 5 2 111001010000 5 2 000101010000 3 2 000110001000 3 1 000111000000 3 1 101111101100 8 1 111110101000 7 1 111111001111 10 1 000100010100 3 1 111110000101 7 1 111010001100 6 1 011110000000 4 1 111111101010 9 1 101001110000 5 1 000001100110 4 1 001111100000 5 1 111110001011 8 1 111110010110 8 1 110010000000 3 1 000001110001 4 1 000010001000 2 1 000111111011 8 1 111001110001 7 1 100000010000 2 1 000011111011 7 1 111101100010 7 1 011111100010 7 1 000110000100 3 1 111101000100 6 1 000111010000 4 1 000001001000 2 1 111110001101 8 1 000001001100 3 1 000001111011 6 1 111111100111 10 1 111001111100 8 1 101111111101 10 1 111100001100 6 1 111011110111 10 1 110000010000 3 1 000110010000 3 1 111011111111 11 1 111000001000 4 1 111111101001 9 1 110011100000 5 1 000110100000 3 1 101110001100 6 1 000111111100 7 1 111100000001 5 1 111011000000 5 1 000010100000 2 1 000011000000 2 1 111010010000 5 1 000111111111 9 1 111100100100 6 1 111110110100 8 1 111100001000 5 1 000111110001 6 1 110111110001 8 1 111000010000 4 1 000000111100 4 1 111011110010 8 1 000111110101 7 1 111110011100 8 1 101110000010 5 1 111011110100 8 1 000001111001 5 1 110101110000 6 1 111111011111 11 1 000101000000 2 1 111110000010 6 1 001011110000 5 1 100000011100 4 1 111100111000 7 1 111110000001 6 1 111011110001 8 1 101111111100 9 1 110011110000 6 1 101111111011 10 1 101101110100 7 1 001101110000 5 1 111101000000 5 1 000011101100 5 1 111110001111 9 1 111111100011 9 1 111111011100 9 1 010000110000 3 1 111101111010 9 1 000100010000 2 1 101111110100 8 1 011011100000 5 1 111111100110 9 1