ADF 4, Li et al. Note: sequence coordinates are genome release 4. UCE=ultraconserved element, data from Glazov et al. 2005 UCE chr start end UCE_len CRM chr start end CRM_len overlap %_of_UCE %_of_CRM chr3R.6616 3R 26682298 26682355 58 tll_O-E chr3R 26681311 26682298 988 1 1.72% 0.10% chr3L.3430 3L 15005987 15006040 54 ind_moduleC+ chr3L 15005234 15005994 761 8 14.81% 1.05% chr3L.4477 3L 20640457 20640530 74 kni_L2_enhancer chr3L 20640521 20641881 1361 10 13.51% 0.73% chr2L.2213 2L 11398956 11399038 83 salm_IRU chr2L 11399024 11399923 900 15 18.07% 1.67% chr2L.546 2L 2481927 2481985 59 dpp_construct10 chr2L 2481155 2481964 810 38 64.41% 4.69% chr2R.2457 2R 16451572 16451630 59 Act57B_-539/+2 chr2R 16451016 16451611 596 40 67.80% 6.71% chr2R.489 2R 5499505 5499571 67 eve_RP_eve chr2R 5498988 5499546 559 42 62.69% 7.51% chr2R.1819 2R 13806342 13806391 50 cluster_at_55C_CE8016 chr2R 13805197 13806720 1524 50 100.00% 3.28% chr2R.1877 2R 14186704 14186753 50 edl_PE chr2R 14186167 14187548 1382 50 100.00% 3.62% chr3L.3357 3L 14681400 14681449 50 cluster_at_70F_CE8020 chr3L 14681373 14682838 1466 50 100.00% 3.41% chr2L.2206 2L 11388605 11388655 51 salm_SE chr2L 11387167 11388914 1748 51 100.00% 2.92% chr2L.2205 2L 11388402 11388452 51 salm_SE chr2L 11387167 11388914 1748 51 100.00% 2.92% chr3R.774 3R 4100139 4100189 51 ato_RE chr3R 4099896 4100264 369 51 100.00% 13.82% chr3L.3427 3L 14937414 14937464 51 Brd_A chr3L 14937053 14937585 533 51 100.00% 9.57% chr2R.2849 2R 18553860 18553910 51 twi_dl_mel chr2R 18552504 18553919 1416 51 100.00% 3.60% chr2L.2244 2L 11455941 11455992 52 salm_sal272P/P chr2L 11455878 11456154 277 52 100.00% 18.77% chr3R.5942 3R 24412987 24413038 52 fkh_-2_construct chr3R 24411718 24413426 1709 52 100.00% 3.04% chr2L.2243 2L 11454763 11454815 53 salm_wingpouch_Guss chr2L 11454486 11454814 329 52 98.11% 15.81% chr2R.487 2R 5498385 5498436 52 eve_stripe1 chr2R 5497747 5498548 802 52 100.00% 6.48% chr2L.2204 2L 11388098 11388150 53 salm_SE chr2L 11387167 11388914 1748 53 100.00% 3.03% chr2R.2430 2R 16406540 16406593 54 otp_P chr2R 16406100 16406610 511 54 100.00% 10.57% chr2R.2432 2R 16406849 16406902 54 otp_C chr2R 16406610 16407051 442 54 100.00% 12.22% chr2L.765 2L 3608975 3609028 54 odd_CE8010 chr2L 3608834 3610207 1374 54 100.00% 3.93% chr3R.4333 3R 18961338 18961391 54 hh_photoreceptor chr3R 18960438 18961852 1415 54 100.00% 3.82% chr3R.1524 3R 7189826 7189880 55 pros_eye_enhancer chr3R 7188932 7190152 1221 55 100.00% 4.50% chr2L.2404 2L 12081577 12081631 55 prd_O-E chr2L 12080487 12081888 1402 55 100.00% 3.92% chr2L.2568 2L 12675551 12675605 55 pdm2_CE8012 chr2L 12674734 12676045 1312 55 100.00% 4.19% chr2L.766 2L 3609512 3609567 56 odd_CE8010 chr2L 3608834 3610207 1374 56 100.00% 4.08% chr3L.4473 3L 20631176 20631244 69 kni_64 chr3L 20631189 20631256 68 56 81.16% 82.35% chr3R.5174 3R 22997169 22997224 56 Ser_minimal_wing_enhancer chr3R 22997004 22997816 813 56 100.00% 6.89% chr3R.4863 3R 21832377 21832432 56 HLHmbeta_enhancer chr3R 21831717 21832595 879 56 100.00% 6.37% chrX.611 X 4232453 4232508 56 bi_pomb33 chrX 4231703 4233190 1488 56 100.00% 3.76% chr3L.1842 3L 8644975 8645030 56 h_stripe1 chr3L 8644871 8645747 877 56 100.00% 6.39% chr2L.2403 2L 12081379 12081434 56 prd_O-E chr2L 12080487 12081888 1402 56 100.00% 3.99% chr3R.381 3R 2562803 2562858 56 pb_0.8+pbZR chr3R 2562130 2562973 844 56 100.00% 6.64% chr3R.441 3R 2694160 2694215 56 ftz_ftzDE chr3R 2693514 2694767 1254 56 100.00% 4.47% chr3R.5182 3R 23012739 23012795 57 Ser_V-1.9 chr3R 23011596 23013611 2016 57 100.00% 2.83% chr2L.2197 2L 11381493 11381549 57 salm_ZA chr2L 11380629 11381686 1058 57 100.00% 5.39% chr2R.3162 2R 20561078 20561134 57 gsb-n_gsbnE chr2R 20561006 20562992 1987 57 100.00% 2.87% chr3R.2932 3R 12511814 12511870 57 Ubx_abx1.7 chr3R 12510679 12512480 1802 57 100.00% 3.16% chr3R.5146 3R 22622223 22622279 57 Tl_600Rd chr3R 22622121 22622722 602 57 100.00% 9.47% chr3R.2930 3R 12511357 12511414 58 Ubx_abx1.7 chr3R 12510679 12512480 1802 58 100.00% 3.22% chr3L.1843 3L 8645194 8645251 58 h_stripe1 chr3L 8644871 8645747 877 58 100.00% 6.61% chr3R.374 3R 2507569 2507627 59 lab_lab550 chr3R 2507118 2507664 547 59 100.00% 10.79% chr2R.3030 2R 19816630 19816688 59 betaTub60D_beta3-14/vm1 chr2R 19816619 19817143 525 59 100.00% 11.24% chr2L.1555 2L 7303081 7303139 59 wg_del-wg chr2L 7302330 7303350 1021 59 100.00% 5.78% chr3R.773 3R 4100027 4100085 59 ato_RE chr3R 4099896 4100264 369 59 100.00% 15.99% chr3R.5183 3R 23013521 23013579 59 Ser_V-1.9 chr3R 23011596 23013611 2016 59 100.00% 2.93% chrX.1148 X 7101641 7101699 59 cluster_at_7A_CE8005 chrX 7100791 7101983 1193 59 100.00% 4.95% chr2R.2431 2R 16406719 16406778 60 otp_C chr2R 16406610 16407051 442 60 100.00% 13.57% chr3R.3003 3R 12643396 12643455 60 abd-A_PRE_iab-2 chr3R 12643148 12643682 535 60 100.00% 11.21% chr3R.4862 3R 21832234 21832293 60 HLHmbeta_enhancer chr3R 21831717 21832595 879 60 100.00% 6.83% chr3R.5945 3R 24419195 24419255 61 fkh_frag1-506 chr3R 24419138 24419645 508 61 100.00% 12.01% chr3R.2768 3R 11817830 11817890 61 srp_A7.1EB chr3R 11817731 11818200 470 61 100.00% 12.98% chr2R.1410 2R 11353703 11353763 61 Poxn_6 chr2R 11352911 11354165 1255 61 100.00% 4.86% chr2L.2214 2L 11399445 11399506 62 salm_IRU chr2L 11399024 11399923 900 62 100.00% 6.89% chr2L.2185 2L 11362925 11362986 62 salm_EME chr2L 11362099 11363392 1294 62 100.00% 4.79% chr3R.6183 3R 25088894 25088955 62 stg_HZ-BEa1.2 chr3R 25088622 25089791 1170 62 100.00% 5.30% chr2R.1409 2R 11353287 11353348 62 Poxn_6 chr2R 11352911 11354165 1255 62 100.00% 4.94% chr3R.4861 3R 21832069 21832131 63 HLHmbeta_enhancer chr3R 21831717 21832595 879 63 100.00% 7.17% chr2L.2186 2L 11363294 11363357 64 salm_EME chr2L 11362099 11363392 1294 64 100.00% 4.95% chr2L.539 2L 2470789 2470853 65 dpp_BS1.1 chr2L 2469788 2471526 1739 65 100.00% 3.74% chr3R.2979 3R 12589447 12589512 66 Ubx_PRE_polycomb_response_element chr3R 12589360 12590916 1557 66 100.00% 4.24% chr3R.5147 3R 22622570 22622635 66 Tl_600Rd chr3R 22622121 22622722 602 66 100.00% 10.96% chr3R.396 3R 2612223 2612288 66 Dfd_EAE-C chr3R 2611720 2612291 572 66 100.00% 11.54% chr2R.486 2R 5496039 5496108 70 eve_stripe4_6 chr2R 5495711 5496511 801 70 100.00% 8.74% chrX.1756 X 9535873 9535943 71 btd_Ss-Bg chrX 9535642 9536715 1074 71 100.00% 6.61% chr2L.767 2L 3610622 3610692 71 odd_-5_construct chr2L 3610419 3611803 1385 71 100.00% 5.13% chr2L.545 2L 2481728 2481799 72 dpp_construct10 chr2L 2481155 2481964 810 72 100.00% 8.89% chr2L.2570 2L 12680168 12680239 72 pdm2_+1_construct chr2L 12678897 12680520 1624 72 100.00% 4.43% chr3R.6615 3R 26682187 26682259 73 tll_O-E chr3R 26681311 26682298 988 73 100.00% 7.39% chr2R.3109 2R 20309635 20309707 73 Dll_215 chr2R 20309454 20310383 930 73 100.00% 7.85% chrX.1149 X 7101880 7101954 75 cluster_at_7A_CE8005 chrX 7100791 7101983 1193 75 100.00% 6.29% chr2R.2 2R 1217536 1217611 76 ap_ApME680 chr2R 1216942 1217622 681 76 100.00% 11.16% chrX.3420 X 20490899 20490974 76 run_stripe1+7 chrX 20490687 20492298 1612 76 100.00% 4.71% chr2R.488 2R 5499277 5499353 77 eve_RP_eve chr2R 5498988 5499546 559 77 100.00% 13.77% chr3R.2931 3R 12511506 12511584 79 Ubx_abx1.7 chr3R 12510679 12512480 1802 79 100.00% 4.38% chr3R.2311 3R 9723828 9723908 81 ems_ARFE chr3R 9723514 9724758 1245 81 100.00% 6.51% chr3R.395 3R 2611953 2612034 82 Dfd_EAE-C chr3R 2611720 2612291 572 82 100.00% 14.34% chr2R.1199 2R 10327242 10327323 82 kn_701-1835 chr2R 10326759 10327894 1136 82 100.00% 7.22% chr3R.2996 3R 12637482 12637568 87 abd-A_iab-2(1.7) chr3R 12636229 12637974 1746 87 100.00% 4.98% chr3R.4880 3R 21862046 21862136 91 E(spl)_m8_dl_mel chr3R 21861312 21862672 1361 91 100.00% 6.69% chr3R.4864 3R 21832479 21832572 94 HLHmbeta_enhancer chr3R 21831717 21832595 879 94 100.00% 10.69% chr2L.2184 2L 11362739 11362833 95 salm_EME chr2L 11362099 11363392 1294 95 100.00% 7.34% chr3R.4881 3R 21865694 21865790 97 E(spl)_PNC chr3R 21864776 21865879 1104 97 100.00% 8.79% chr3R.5181 3R 23011719 23011835 117 Ser_V-1.9 chr3R 23011596 23013611 2016 117 100.00% 5.80% chrX.249 X 2294718 2294843 126 gt_gt23 chrX 2294438 2295651 1214 126 100.00% 10.38%