{"text_format":"3","workbook":"xls","n_sheets":11,"sheets":["Table S2","Table S3","Table S4","Table S5","Table S7","Table S8","Table S10","Table S12","Table S13","Table S14","Table S15"],"not_rendered":{"external_links":2,"defined_names":2},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Table S2","index":0,"n_rows":91,"n_cols":9,"rows_kept":91,"flags":["formulas_cached_only"]}
["Clone name","Breakpoint coordinates","Breakpoint sequence","R/R","R/U","U/U","Overlap (bp)","Insertion (bp)","Note"]
["IGBR02_C17","left of chr1:182,924,399 with right of chr2:62,363,509 ","GTCCTGTAACATCTTTCTGGAGATCACAGAAGCCACTATAGTATGGAAAACCCCAATCCAAAGGCTAACTTTGGGTAAGTGGTGTGGTCCAGTAACAtctttctggtgaaccctgaagggacaatactgaagaaaccccccaatccaaaggaaatagactccagcactg@a@ctgTATTTTTAATTTTTTGTGTAATGTGTAATCTATAATCCTTTTGTTTCCCATATTTGAGAACATTTTTCCCTGAAAGAGGCCAGTTTCCTCCCCAGAAACCATTACAGTAGTGTTGAACTATCACTGTCTCTCAGTGCGTCATCCATCTTTGCATTTAAAATCCCCAAAGTGCTTTCCCATTT","+",null,null,1,null,"3’ UTR of B3GNT1 fused to intergenic (ig) DNA on chr 1"]
["IGBR01_B10","left of chr7:139,540,838 with left of chr9:2,897,955","ctgggcaacacagcaaaaccccatctctccaaaaaaatccaaaaatattagccaggTCAGTGCcagtgactcacacctgtaatccccagccctttgggaggccaaggcaggtggatcacttgaggtcaggagttcgagaccagccctggcccaatgtggcgaaaccccatctcttactaaaaatacaaaaaattagccgggcgtggtgatgcacgcctgtaatcccagctactcgggaggttgaggcacgaaaatcacttgaacctagaaggtggaggctgcggtgagctgaaatcacgccactgcactccagcctgggcaaaagactgagactccatctAAATAAatatatatattatataaatataaatatatatattatataaatataaatatattatatataaatatattatatatattatataaatataaatatactatatatattatataaatatactatatattatataaatataaatatattatatatattatatataatataaatataTtatatatattatatataatataaatatattatatatattatatataatatataatatatttatatttatata@CACTTGCTTATGTCAAATAAAAGAAAGAATATATAAAGCAATACTTAAGCATCATTTTGTTAAACATTTACATCTTTTAGGTTACGGAGAGAAAAATTGGAAAATAAAATAGCGGAAAGAATCTATTATTATGGGATTTTTTATTTTCCTTATATTGTTC",null,"+",null,0,null,"Fuses exons 2 -> end (?) of SLC37A3 to ig region on chr 9."]
["IGBR11_N16","left of chr2:174,154,570 with right of chr1:18,343,129","tttattttttgagactgtcttgctctgtcgcccaggctggagtgcagtggtgggatctcggctccctgcagcctctacctcctgttttcaagagattctcctgcctcagcctcctgaatagctgggattacaggcgcctaccactaggccaggctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggctagtctcgaactcctgacctc@aggtgatc@AGCTCATTTTGACTTGCCCAGATGTTTCCCAGTTTTAACACAGAAAGCCCCACATCCCAGGCCTCCACTTTAAtgagtaactcagtgtggtttgtctaaacctatccagattttaagtctgaaagtcctgcatcctggtaaccctctcaatcacaagcaaacctggCC ",null,"+",null,8,null,"Fuses 1st 2 exons of MGC15730 to ig region on chr2"]
["2B421_009_F24","right of chr20:18,308,799 with left of chr21:44,981,595","TTGCCATTCCCTCCTTTCCACTGAGGTGAGTGAGTTCCCATGCACTCATTGCCCATTTGGGTTTCTTCTATTTTTCTTATCGGCTTAGAGAATTTCTTTACATCCTCTTGAATCAGAGCATCTTCTAGAGTCCAGAcagtgctgtccaatagaaatacaatctgagccacatatacaatcataaattttctagtagccatacttctaaaagtgcagagaaacaagcaaaattaattttaCTGGGATacatggacagatacttttccaaagaagacatacttgtggccagaaagcatatgaaaaaaagaaaaagctcggtgtcactaatcattagagaaatggaaatgaaaaccacaatgagataccatctaacaccaatcagaatggctatttttaaaaagtcaaaaaataacatgctggcaaggttgtggaaaaaaggggatgcttataccctgttggtgggagtgtttaaccgttgtggaaaacagtatggtgattcctgaaagagctaaaaatacaaataccattcaacccagcaatctcattattgggtatacacccaaaggaatataaatcattctaccataaagacccatgcatgtgtatgttcattgcagcactattcacaatagaaaagacatggaaacaacctaaatgcccatcaatgacagattggataaagaaaatgtggtacatatacaccatgaaatagactatgcagccataagaaagaacaagaacatgtctgttgtgggaacacggat@g@cctgtccctcccctgctcacctgcccagcccccacctgtccttccccctccccctgccctccaccccacccctccccTGGCTGTTCTCTGGAAACTTCAACTTTGTCCCCTGCAGAGGGCCTCTGCATCAAGTCCCTTCTCAGAGAGGCTTGGCCTGTTGCTTGCTGCATCCCAGCTGCCCCATCTCTCTCTGCTTTCCCCTCTGTGGGACGTTTGTTTCCATGATCCACCATGACATGGCCTCTGTGGCCCCACAGCAGATGGGGGACACCCAGAAGGGCTCTCAGGAGGGAGCTGTGATTTATCTCAGGGTACAGGGCCCTGCAGGTCCTTGC ","+",null,null,1,null,"Fuses exon+UTR of MGC44328 to the first(?) exon of AK127406"]
["2B421_011_K20","right of chr3:46,706,835 w/ right of chr2:163,329,998 ","TACCATCACTTCTTATGAACAATATTATGCAGAATTTGACTCCA@GATC@ACAACCATCCACCCTGAAGGGGTGCCTGCTGGATGGGTGGGGGCCCTTGGGGTGGGCAGGTGGGCTTGAGCCTTGAGATTTCCTGCCCTGGAGTGAGGGACCTTCCAATCAGGCAGGAATCACCTGGGAATGCAGTGTCCTGCCTAAAGGGAGGGGTGAAGAGAGGCCTGGGCTCAAACCTACCCCCACAGCCAGGCTACAGGCTCTACTCCAACAAAGCCCTCCCCTACCAGACCCTGGTACCC",null,null,"+",3,null,"Fuses 2nd etc exons of ALS2CL to 1st 2 exons of KCNH7"]
["PM1_012_E06","left of chr3:115,679,584 with right of chr3:170,746,634  ","TctgggatacaggcgcccaacaccacgcctggctaattttgtatttttagtagagacgggtttttccatgttggtcatgctgggcttgaactcctgacctcaggtgatccgcctgcctcagccttccaaagtgctggcattacaggcatgagccaccgcgcccggtcCGTACCCTGCACTCTTTTGCATAGACTTCAGtctttctttctttcttttcttttttcttttctctctctcttcttccttccttccttttttctttctttctttctttcttctttccttctttctttctttctctgtctctctctctctctctctcCCTCCCACCCTCCCTCTCtctctctctctctctttctttcttttttttgaggcagagtttcattcttgttgcccaggctgcagtgcaatggcgc@gatc@CTTTATTTCTAATTCTTTTAAAATTGTATATATAAGAGCCTAACTGTATCTTACTCTATATATGCTCTTCTGCAGTGGTGGCAATTCCTGTCTATCTCTTAATTTACCTTAAGTAAGAATAACACAGGAATAAAATCCCTGTATATNGTAACATATTTTCTAAAAATATATTAATGGCTTTCTTTACAACATGACTGTAAAATATACAATTTTCTATAAATATTCAAGTA",null,"+",null,4,null,"2nd etc exons of MDS1 fused to 7th etc exons of ZBTB20"]
["PM1_009_N12","left of chr5:142,228,976 with left of chr10:19,621,843 ","AAGAGATTAACAAGGCCCGGGGACTTTGGTATTCTTGAACTTTAGGCAGCCATGAGGCCAATCCTGTTGCAAGTTCTAACCTCAATGATGGCCTTTCTGAGCTGTAATCACTTTCTTTTCTTTTCTTTTTCtttttcttttttc@ttttttttttttttttgag@gcagagtctcgctctgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaagctccgcctcccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccatgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccagggtggtctcgatctcctgacctcgtgatccgcccgcctcagcctcccaaagtgatgggattacaggcgtgaaccaccccgcccggccTGCATTATTTATGTGGCTTTTAGTTTATCATGATGTCAAATCTGCACAAATGTATAATACAGATAGGAAAGCAGGTGCATGAGCAGCAGTGGGGACCATAACTCATTTCCAACTGAAAGATAACGATCAGTGTTTTTTTTTAAATCTGGGTACTTCTA","+",null,null,20,null,"1st exon of ARHGAP26 fused to the ig region on chr 10"]
["PM1_010_C02","left of chr10:5,753,560 with right of chr11:44,760,540","CTACTAGAAACTGGCAGAGTCCCTACATGGATTCTCTGAgccaagcagaaggcactgaaactgcctctatctaccaacataggaaaaaggcatttcacattgctggaggaattgcagagtttagtgctaccatcaagaacatgaaCCACcgcgcctgtaatcccagcactttgggaggctgaggcagacggatcacgaggtcaagagatca@(gaaccat)@AGctgttttccaaaatgcttgtattgtttttcactcccatcagctgtgtactagagttccagtttctccacatcctagtcaatgcttgctatggtcagcttttgagttttagacattctaatagttgcgtaacggtatcgcattctggttttaacttgtacttccctatttaactactgatattaagcatcttttcatgggcttattgtcatttgaacactttcttttgtaa","+",{"$nulls":3},7,"4th etc exon of TP53I11 fused to ig region on chr10"]
["PM1_005_P06","left of chr17:55,656,518 with right of chr20:8,031,998","ttctggattaactcacatttgaccaattggctctaaatacatctacagaacactccacccatcaaccatagaacatacatttttttatctgcacatggaatatattccaagatttaccatgcttggtaaagacatgcttggccataaagcaagtctcaataagttaaaaaatataaaaagtataccaagcaaactctcacaccacagtgaaataaaaatataaatcaataccaagatagtctttgaaacccacacaattacatggaaattaaacaaattttctcctgaatggcttatgagtaaccaatgaaattaaggcagaaataaaaaatttttttaaataaaatgaaaatagagacacaacatagcaaaatctctatgatgcagcagagcagtgttaagaggaaagtttatagcaataaatgcctgcctcaaaaagttag@aaagatc@ACTTAGCAGTCCTAGAAGTGCTGTCATCAGCTTTAACATGAGGATTATTTCTTAACCCCATCTAAAGATCCTGTTTGGTATGTGCTTACCATATAACTTGTGACACCCAAAGGCTGCATACCACAGGCAGAAGGTTACAAAGTGATGACTGCTAGATTGTTTACCAAAGATTAGCATGTAGTTGAGAGTTGAAATGGCTTAAAATACCACTGAGGCTCACAACTCTAAGCCATGGTTAATCATCTTCTGTGCATATTTTCGTATTGTAAAGATCATGTATTTCTTTCAAAAGAACTTGTGGACATTGAGTTCATAGATACAATAGGATCTAGCCCCCATTACTCTTTTTGTGGNAGATCNTGNTTTAGTTTTCTTTTAATTTAGTGACTTCATATCACCATTATCTACCAAGAACATTTGGAATATTTTTCTAGTTTGAGG",null,"+",null,7,null,"14th etc exons of USP32 fused to ig region on chr20"]
["PM1_011_D20","left of chr15:82,534,521 with right of chr6:136,606,360","acaataataactggatactttaacaccccactgtcaatattttagacagatcaacaagacagaaggttaacaaggatatacaggacttgaactcagctctgcaccaagcagacctaatagacatctacagaactctccacccc@aGatc@ccgtctctaccagaccaaaaaaaagtcagccaggtgtggtggtgcacacctcccaagtagtcccagctactcaggaggctgaggtgggaggatcacttgagcccaggaggttgaggctgcagtgagccgttatcacgcgactccacttcgttcagcctgggcgacagCAAGA","+",null,null,4,null,"4th etc exons of FAM54A fused to LINE in ig duplicated region of chr15"]
["MCF7_1-90K7 1","left of chr1:107,642,839 with left of chr17:56,206,423","TCCACTTGCCTTCCGTAATAGAGACTGTCTCCCTCTGATTGTTCAGTGCAAAGGCATCATCATCACTGGAGAGACAACTAAGTGTCCCTACCCTACTTTGTTATATTGTCATGATTAGATACAGAGAGTATTACTCTGTTTATAGTCTGTAGTTATTCTGTGTATGTTTCATCTTCTCTACTCAACAGATTCTATGTTCTTGGGGATTAGGACTATATATTGCCTTCTGTTTGAATCCCTATGCGACCTCTCATGGTGTATCCGTAGACTATCCCATTAATTAATGCCCACAG@AAtg@cagtgtctgagagaaaaaaatacactggatgggttaacaacattagatactgcagaaaaaaaacatgaagaaacatgaagaggccaatagaaCTACTGGAACAAGAGGGGAGGGAAAGACTTCAAAGTGATCAGACATCAGTGATTGTGAACGACTCAGTGACTAAATCATGAGACGACGAAGAAATATTTATACGGTTGAGAGGATGTAAGAAATATAAACATCATACGTGA",null,"+",null,4,null,"NTNG1 break in intron 3 (and up) fused to BCAS3 intron 6 (and down)"]
["MCF7_1-90K7 2","right of chr17:56,176,517 with left of chr20:52,065,532","ACTGAAGGAAGGTCAATAAATATATATTAATGTAGGTAATTCTGTACTTTTATTTTTTCCACTACTCCTACCCAATTCACATCAACTGATAAAAATTCAATGAGTAGTTTTTTTTTTATAATGCATTCACATCTTTCAAGCCCATGGCAAAAACAGGGAAAGAACACAGACAGCACAACCATAGGAAATCCAATTATGAAAGGGCTTCAA@ATC@AGTGGACATAATGTATAAAATTATTATTCAGAAAGATAGCTAAAGCAGAATCTGTAAAGACTAACCATCCTCTGTGTGTCCTTTCTAAAACGTATGGATCATATCTGTATAAACCTTAACTCTGTTTCTGTTCTGAAATGGTACTCTAATGTAGAATTCCCACAGACTATTTGGAGAGTTCTCTCCTCGAGGAAGTTTGACATTTTGTGACTCACATAGGATAGTTTAGAATTATGCTTCTAATTTCAGTAGGTTGTACAATCCTGATTTTAATATATTCAGAAATA",null,null,"+",3,null,"Break in BCAS3 intron 5 (and up) and BCAS1 intron 4 (and down)"]
["MCF7_1-69F1","left of chr1:112,077,576 with right of chr17:54,396,131","CAAGTGGATCTGGCTTATGGGCAGAGCTACAATCAACATGAGGAACTTGTACTGTGTGAACATGGCAGAGATTAGTGTGCTGCCTGGGAAGTATGTGCGGCATTTAAGAACAACCTGAGCTGATGGGCCATTGTGCCACAAAGTAtGAAGAATCCTGGACCTCGGACATATGGGTCAAAAAATACTAACAGTGTCATAGACATCACTGATATCGGTGATCACCAGCCTAGTCCACCACTTCCCAAAGTGTGGACCCTGGATCACTGGTGGGCTCAtAATGACTCCAAATAATGCTGAAGCAGTTTAGGTGGTGTATGGACATGGAATTATTATTTTTAAGTTTTTCTTCTTGAATTTTCTTTCAATCTTTCTAGTGATACCAAAGAGAAGTCTTAATTTGATGCTAGGATATCTTTAACACTGTTACTGAAATGTCAGGGGTTTGGTCTGGGTCCTGCTGCTTGCCACACAGAAAGCCAATCACTGAGACAACAAGTGCTGCCAGGGAAGAAGGCTTTATTCAGGGCTGCAACCAAGGAGAATGGGAGATCAGTCTCAAATCCATCTCCTCAACCAACTGAAGTTAGGGATTTATATATAACAGCAGGAAAGAAATGTAACTATGTGTGGAAAAACAGGATTTAAGGAGGGGTAAGGAAGAGGGGTTGGAAAACAGGAATCGCCATGGATGAGGGGTCTGGCATCTCATGTCTGGATGCAGTGATCTGGTGAGTTTCAGATCCCTGATACTCTCTGGGAGGCCTGAGGGTCGGTTTTCTGAGGATGGGACTCAAATAAGATAAATGTAAGTTTCGAGCTTTAAGATCAAGAGGGTCCATTTCTATGTTTATCCAAAAAACAGTAAACATCAGTTTGATGGAACAGTTGGGCCGGTTTCAACACCTCTTTAACCCTTGCTCATCTCCCTTTCTAACCAAGTAGGAGCAGGCTTCAGGCTCAGTTCCTTAAGCAGACAACAGCATCTGGCTAGAATTCAGTAATGCAAGTGGTGTGTGGGTATGGCAGAATCACCAGGGCAGAAGAAGAATTAAAGTAGTTTGGTAAACACTGAACTAGTCCAGAACTTTGGGCATCTGGGACATAAAGGGTCAGGGAGGGAGGGTGATTTGCTGCAAGTCAACCAACTGGTCAACACCAGACCAAGCCTGGTCTCCCTGCTTCAACTACCGGCCCTTTCCCCAAGCTCTTCTGCTCTCCACGTGGAGCTGTCAGTATTTCTCCACTTTCCTTCAAAAAGCAGACCTAGTACTATCTTGTTCTTTGCTGTCTTTGTTATTTCTTGTTTGAGCTTTTTTTTTTTTTTTTGGAGTTGGAGAAGGCATGGGATCATGCTATTAGCATAACTAAAAATGTTTTTAGTTTGCCTCTGCATTTTCCCCAAGCCTCAGCTTTTCCTAAAAATCCAGCATCTTCTGCATCCTTCCCTGGGGACCACACTACTCCTCAGTGCTGGGCATTGTCTGTTTACAACTAAAGCAGATTTTTTCTTTTGCTTTTGTCTTCAAATGTGAGCTTTTCAGAGTCTCTAGTGCAACCATATTAGTGTTTTAGATGCTTCCTGATTATAGTTATTTGTGCTTATGTAGTCAGAATTTCCCCCAAAGTGTTTCTGGATATGGATTTACACCTCAGTTCTGCCTGGGCTGCTAACTAGCTGAGGGACCTTGTGCAAGTCATTCACCCTCACTGAACAGGTAATAGCACTGCCCTACTTAGCTCTGAGGGTTGCCATGAGGACCAAATGAGTGGTAGTCACAAAGATGCTTTGCAGGGCATAATGGACCCCACATAATGCACCCCACAATGAAATGTGTTATTCAGCTCCTATTTTTCTTTTGCTTTTCCCATCAAGAAGAATGCTCTTCAGATTGGACAGTGTAAAACCAGCATCATTAAAAAAAGAACTAAAGCTCAAAATAGGAGCAAAGATAGAGAGCAGCTCAGTCTTTAAAGGAACTCAATCCCTGAGTGTCTCAGAACCATCAGGCCTGATCTGCAGAGCTGTGATGGATGTGTCAGGCTATGTTATGTCAGGGACCAGAGTAGGTTCCATGGAGGGAGAACAGGAGGGCCCGTGAGGGCTTTGGCCACTGTCACTGTGAGAAACCGTTGAAAAAAAAACTATGAAATTTAGATAAGAAAAGACTCAAAAGATGGCACACACATGCCACTGCCTGCTTAGAATTAGAGATTCCTCCAAGAACCTCACGATTTGTGGAACACCTCTCCCCACCCCACACCCTGCCCTGCCCCCCAGGACATTCCTCAGAATCTCACCATCTTCCCAGCAGGCCCCTCAGCAGTAATGGGGAAGAAGTAGACAGCCAAGGAAGAGTAGGATCCTTGCTTCTGTGATTCCGCCCATAGCCACCCCGTGGGTCCCCCGCCGTCTGTCTGGGTTCAGTTTGTGCCTCCACACTTATAAACCGTGTGACCTTGGGCAGGGGCTGTGTCTTGAATTTCCCATCATATGGAAATGATATCTTGTTCATAGTCTTGTTACAGAGTTTA@GA@TCACTTGAGGCCAGGAGTTTGAGATGAGCCTGAGCAATATAGTGAGACCCCATCTTAACAACAAAAAAAATTTTTTTTTAAATTACCCAGGTGTGGTGGCATGCACCTGTGATCCCAGCTACTTGAGAGGCTGAAGCAGAAGGATTGCTTGACCCCAGGAATTTGAGGCTGCAGTGAGTTGTGATTACATCACCCCACTCTAGCCTGGGCAACAGAGAGAGACCCTCTTATTTAAAGAAAAAAAAAGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAACATACAACAAAATTAGCTGAGTGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATCGCTTGAACCAGAGAGGCAGAGGTTGCAGGGAGCTGAGAATGCACCATTGCACTCCAGCCTGGGCGACAAGgGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAaTTGGCCGGGCACAGTGGCT1CACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAG1GTCAGGAGTTCGAGGCCAGCCATTTGGAGACCATCCTGGCCAACATGGTGAAATGCCATCTCTACTAAAAATGTGAGAAAAAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCAGGAGGCGAAGCTTACAGTGAGCCCAGATGGTGCCACTGCACTCCAGCCTGGGCGATGGAGCAAGCCTCCATCTCAAAAAAATAAAAAATAAAAAATAAATAAAAATTAGCCAGGGGTATTAGCgGGCACCTGTAATCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATGGCTTGAGCCCAGGAAGTGGAGGTTGCAGTGAGCCAAGATTGCACCACTGCTCTCCAGCCTGGACCACAGAGCAAGACTCTCTCAGAAAAAATAAAAAATAAAAATAAAGAAGACAAAACCACAAGACAcGATTTACCACCCTGTGCTATGTTAATGAGGAAAAAAAGGACAAAACCTGAGGTCA",null,null,"+",2,null,"KCND3 break in intron 2 (and up) and PPM1E break in intron 2 (and up)"]
["MCF7_37_E22 1","left of chr1:114,926,240 with left of chr20:51,902,784 ","atccgtccacctcggcctcccaaagtactgggattacagatgtaagccaccacgcccggcAATTTTTACAATTTCTAATTCAACCCTGTCATTTGTCAGAAGGAGACAGCAAGACAGAGAAAGGAAGTGCTTTTCCTAAGATCAT@TGTAAAA@ACATGTGAATTCATTTATTAATCTATAAATTTGGTTTCATACGTGATACTTGGAATTCAACCTGCCTTATTTTGCCAAATAATCTTCCTGAATGCAGGGGTCAAAAAATACATTTCTGggctgggtgcagtggctcatgtctgtaatcccagcactttgggaggctgaggcaggaggactgcttgagctcgggagttggagaccagcctgggcaacatagcgagaccctgtctctacaaaaaaataaa",null,"+",null,null,4,"Big deletion, takes out genes from PALMD to BCAS2"]
["MCF7_37_E22 2","right of chr20:51,897,435 with left of chr3:62,825,720","ACTACCCAATTACTATGTTACAGAATGATTCCCTCAAAGGAGAATCTTCCCAATGACCACAAGGCTCCAAGGGGGAAAGCTTAACCTCTTAGCCTTTACCCAATGTGCCCAGAGACTTTCAACAGCTGTGAGAATGAGTTGTGTTTTCTCCGTTATTCAAATTTGCTTTCCACATAACGCTCTTCAGTTCAGTCTGCATTGTGTTAACCTTGAATAGTTTCTTTTATCCTTGTAGAATTAAGTAA@ACA@TCATCAGACAATGTTGTTTGAGCCACTTCTATGTATGAGAAACTCACTAGATCCTGTAGAAAAAGTATGTAAAGTCATTTTAGATGGCCTTCCTGATCTCTAGGAACCTAGCAATCTGGTTGAGAAGTTGAGATACACTGACGTAGACTAAGTCAGGATAGTGTGAGTGTCTGAATTGTAAATATTGGTGTTTTCTAGATTT ",null,null,"+",3,null,"CADPS break in intron 1 (and up) fused to ig on chr20"]
["MCF7_37_E22 3","right of chr3:62,818,942 with left of chr3:63,488,828","ATTTTAAATATAATATCTACATATCCCATTTTTAGTAGACACAATTGGTTACCTAATTGTTATTCATTCCCCAATTCCAAACAGACTTGTAATTTTTTCAGGTATGAAAAATTATACCCCATTCCCAGCTTTAGAAGTAGATACAGCTGAGTTCAGACCCATCAACACACAGCACTATACTGGAATACAGCTGGCTCACAGGTGCCCAGGTGATCCAAGTTGATCCAATCAGACCAAAGTGGAGGACTTGTATTCCATGCTTAGGGGAGAAGTTTTGGGGCTCCTCTCCTGATGGACTATGGAAGGAAGCATGTATCATAAttggtactggcagccatcttagaaccatgaggagactcaatttaggctgaaaccaaggctgaatatagtgaagttgctgaactatggaaataattt@gag@gtcatttatCTCCTGTAGTTATCTTCCAAGTGGGATTTTTCTCAAAATCAGATATGAACATGTGGGAAGGAGGTGAGAGACCAGCAGGAGTTTTGGAACCACTGGG","+",null,null,3,null,"CADPS break in intron 1 (and up) fused to SYNPR break in intron 3 (and down)"]
["MCF7_37_E22 4","right of chr3:63,006,824 w/ right of chr3:63,471,508 ","AATACCTTTTGGCAAGTCTCTGTTCCTTCTTAATGCTTTTGAGTAAAATAAACAAACTGTCACGTACAATATTGCTCCAAGAGAGGAGACATCCTTAGTTGGGATAAAGGacaccttgattatatagtcaaggaaacagaaacccggaagggcaaagtattgctcaaagatcccacagctgattagtggcTTTAAAAAGGTTCTATTCCCTAGGACACTTGGCAATGTGCTCAGAAGAACAAGGTGTCAATGttggagtaaatttaatctgaattctaatcttagctctcctatccaccaagagtgacacacagagcaagtgatttgaagtctctgagcctcagtgtcttcctctgtaTGAAAGACTCAACAAAATACTTCTCCTGAC@GTCTCAGTTCTTTATGCTCTGGGATACAAGAAAAGAATGGAGACTGGAAATATGTAAGTATCCAAGACTTCTGCTTTTCAGGGCCTGAGAAACTTTAAGTAAATGAAAGGCAAAAGGTACAACtgtgtgtgtgtgtgtgtgtgCCCCCACGTTGTGTGTGTG",null,null,"+",0,null,"M19503 – break in intron 1 (and up) fused to SYNPR break in intron 3 (and up)"]
["MCF7_1-23I6 1","right of chr20:45,218,939 with left of chr17:58,433,648 ","CCTGCTGTGGTTTGATTCATTACTTTTTGTCTTTGGCTGCTTGGAGACATGAATGCAGAAATTGTTGACAAATTTGCGTTAGAAAAATGATGCTCATCAGGGCCCCGATGAACTTCCTGGCTGCTCCTT@TGCTAAAATCCACTTAATGATATTCATGCTTAAATAGGAGAAAGCATATAGATGTCTGCAGATTATTACTTTGAAATGCATCAAAAAATAAGGTGGATTGATGGACTGATGGAGGCATAGAGAGGCAGATATGTGATGAATTATAACAAAATAAAATGTTAACAGTAAACTGTAAGTAGTGGATATACATGCGATAACTAAAACTATTTAAAATGTAAATAACTGA ",null,null,"+",0,null,"EYA2 break in intron 10 (exons 11-14?) fused to ig on chr17"]
["MCF7_1-23I6 2","right of chr17:58,432,619 with right of chr20:61,766,679","ATGGAAAATAATACTTGATACACAGGAAGTGCTAAATATTTGCTGAATTTATCAATTACATATTTTTGTTTGTATACCATTGTCCATATCAAATCCCTTATAAAGAAATCTGGTCTTgaccaggcgcagtggcttatacctgtaatctcaacactttgggaggtagaggcgggcagatcacttgaggtcagcagttcaagaccagcctggccaatgtggtgaaaccctgtctctactaaaaaatacaaaaaagttagccgggcatgctggcatgcacctgtagtcccagctacttgggagtctgaagcaggagaatcgcttgaacccggatggcaaagggtgcagcgagctgccacaggactccagcctgggcaacagagggagactccatcttggaaaaaaaaaaagaaagaaagaaaaagaaAaaaaaaaaagaaaagaaaagaaaaACGAAAAG@GA@GCCTCTGGGACGGCCCCGCCCCTCGTGCCCCTTCCCCTCGCAGCTCCTGTCCTCGCCCCGCCCTCAGCTCTCCGCCAGGCAAGGTTTGGCAAGTGCCGCTGTGCGGCAGTGCCTGCTGATTGGCTGGTCTGTTGCTATGGTGCTGCCCAGGGGTGTGCTTTTCCTCCCCTGCCTTCCCTGCTATCCCTGGGAGTATCTGGGGTTGGGTCATCGCTG",null,null,"+",2,null,"RTEL1 break in intron 6 (and up) fused to ig on chr17"]
["MCF7_1-23I6 3","left of chr20:61,767,438 with left of chr20:48,707,012","GAAGAGGTATCTGGTTCTGTCTGTGTTTAAGCAACTCCCTAAGGAATTCTTGTGGTTCCAGTTTGGGGGGCCTGTACTGTAGAGGCAAGGGAGGGGCAGGACATCCCCCAGACTCTGACTTCTGAAGCCTTTTCTGCCCGGGGCCTCTCCGCCAGTACAGGCAGTGTCCTTTGCCAGGGCTGCCATGCTGCAGAGGGGAGTGGGCCACTGTTTAGCCCAGGAAAACCTGGCTCTCCCTTAGCTGGAAGTTCTGGGCCTGTTGTGGTTGGCAGGGAAGCTGAGTGACGGTGCTAATCACAGGGGCACCTGCAGGGGTTTGTGGGAGATGCCTCTGTGGGTTGGGG@CGA@AAGCAACTTGCAGTGCTAAGTATGGTATATCAAGGCTCTTGGAAGTGATCATACTATTTGACCAACAATTTAACTTCTGAGAATTCATCCCTAAGACAGAGCCTCAA ",null,null,"+",3,null,"RTEL1 break in intron 6 (and up) fused to ig region on chr20"]
["MCF7_1-23I6 4","right of chr20:48,706,688 with right of chr17:57,562,048","ATTTCCATCCATAGGAAACGGTTTAAAAACTAATGTAGGGATGGGCCCCCAATGGACTATTTTGCAGTCATTAGAAATGCTTGTGAGTTggccgggcacggtagctcacgcctgtaatcccagcactttgggaggccgaggtg@tcacctgaggtcaggagtttgagaccagcctgaccaacgtggagaaaccccgtctctactaaaaatacaaaattagctgggcgtggtggtgcatgcctgtaatcccagctactcgggagtctgaggcgggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgtgccattgcactccagcctgggcaacaagagcaaaactccatctcaaaaaaaaaaaaaaaaaaGggccgggcgtggtggctcactcctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagatcaagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggtgtggtgacgggggcctgtagtcccagctactcaggaggctgaggcagaagaatggcatgaacctaggaggcggagcttgaagtgagccgagattgcgccactgcactccagcctgggtgacagagctagactcagtctcaaaaataaacaaataaataaaaTAAGATTAAAAAATAAAAGGGTGAAAATCATAATGCAATTATCACAAGAAACTGTCAAAAGCCCTTAACTACACTAGTTAAAAAGAGTGGAACAGATTAACTTCTTGATATCATAATGAAAAGGCAAACACTATGACTAACACACACCATATCAAAATAGAA","+",null,null,0,null,"Ig-ig"]
["MCF7_1-23I6 5","left of chr17:57,570,668 with left of chr17:57,563,828","TCCCGGCGCAGCTCGGCCTTGCGGGCGGGCGCGGCGCTGTGCGGCAGGTGGGCTTCGGGCGGCTGGGGCGCCTCGGAGGGCGGGGCCGGCACGCCTAGGTAGGGGCAGCCCTTGGCCTGGAAGAGCTGCAGCACCAGGTCCAGCA@Cgcgcccg@gctaatttttgtatttttagtagagacgaggtttcaccatcttggccaggctggtcttgaactcccgacctcatgatccacccgcctctgcctcccaaaatgctgggattataggcgtgagctaccgtgcccagtgaaaccctttctctatgaaaaatacaaaaagtagctaggtgtggtggtgcacacctgtaatcccagctacacatgagactgaggcacaagaatcatttgaacctgggaggcagaagttgccgtgagcagagattgcaccactgcactccagtctgggcaacagagtgagactctgtctcaaaaaaTGTAGAATTGGGGCAACTGGGCAGGGACAGGAGTGTTAGTTAATTACCTGAATGATTTTAAAAGTAAGAAAGTCAGCCAGAGTTCACAGAAACCGAAAATTCAAGAACAGAACTCATTTTTCTATCATGCCCCTCAACCAGCATCTTTTTGCTCTGCTCTTGTTGGCATATATATT",null,null,"+",1,null,"Deletion of 5 genes (BC058890, EFCAB3, METTL2A, TLK2, MRC2, RNF190)"]
["MCF7_1-23I6 6","right of chr17:57,567,780 with right of chr17:58,392,933","ATTGTTTTTCATAATCTCATTTCTTGTTGATCTGTAATTAATGACTTACCCAATAGCTTCAACATTTTCCCCACCAACTCTACCTCAGCCTTTTGATGAATATTTAATATTTCTAGAT@G@TCCCATATGCAGGTCTAGTGCCTGTCGATCTTTCCTATCTGCCCATGGCATTTATTCACTCATTTATTGAGGGCCCACTAGGCACTATAAAGGCAATATGGTGTCTGACCTAAACAAGCTCATAGTCTTGT",null,null,"+",1,null,"Ig-ig"]
["MCF7_1-23I6 7","left of chr17:58,396,910 with right of chr20:55,108,872","CAGGAGGACAGGCCCTGAAATGGGCGCACGTGACAGCAGCAGCCACCTCGAGAGTGACATCACCCCTGAGGGCGGAGCCCAACTATGTAGGGCCTTGTCAGTTACCGAGCTTCCTCCCTGCTGC@CC@AGTCTgtcacatggcaagacagaaagcaagagagagaaacagaggtgtcaggctcttgtaaacaaccagctctcggagaaactcccagagtgagcactcactcatcaccatgagagggcactgagccattcgtgaggaatctgcccctacgaccgaaactcctgccaccagacccacctccaacactggggttcccctttcacatgagatttgtgggggacacatcctacaccatatcacaagggctagaaacctgactcacagcagcttcagcaggagaagaacttcactggctcctgtggttgggaagttggggaggagcatttggctccagacatggctgaaAATAAAGGCTCGCATCAGAGTTTGTTAACCTTAGTTAGAACTCCTGACATTCAGGATGGGACCAGCCTCTGATGATGTGGAGTGCATCTTCAGGCTCTGTCCATCTCTCTATTTCCACTCTGTGTCAGCCTCACCATCTTCCCCACAGATGTGCTCCTTGTAGAGTCCAGGAAGGATCCAGGCT",null,null,"+",2,null,"Ig-ig"]
["MCF7_1-23I6 8","right of chr17:57,449,377 with right of chr20:53,592,899","TTTTTTTTTTTTTTTAGCATTTTAGTTCTACTCTGTTTTGTTATTAGAAACTTCAAACATGGACAAAAGTAAGCGAATTGGGCAATGAATTCCTGTTTA@TCAA@GAATTTTACAGTTTAGTAGACTGATTAAAGTAAGCACATATCTAATTGTCTTAGGGCAGTGCCCCCAAGAAAGGTAAGAAAAAGTGTAGTGAGGGCTAACAAACACTGTTCAGCAGAGCAGTTAAAAGAATAGGTTAGATTCAAATCCAGGTACGTGAGGATGCATGTGTATGTGTGTGGGCATATATATATGAAATATACTATTTGATTAATGTTTCAGTA",null,null,"+",4,null,"ig region on chr20 fused to THRAP4 (intron 8 and up)"]
["MCF7_1-6F10","right of chr3:61,748,214 with right of chr9:116,673,630","ACTGTGATATAATTGTGTCCATCATACCAAAATTAAAGGCTTCCAATAAGGAATGAACATTAAGGTCTGGGGTCAGTGATCAAGCATTTATGGGCTTCCCAGAAGGACCTAATAAAGCGGACTATGGTGATTCAGTAACTGTACTGTCCCGCATTACTTAGGGGCTCTTTACTTCACAGATCACTGAAAAGCGAAACTAATG@(CCCAAGTTTCCTTTGATATATAtatatcaag)@ataaaaatcatgccgaggttttgataggaattatattaaacctttatatcaattcgaggcatgtggacatctttattatcttgtgctatccaattcgtgaatacatatatctttccttgtgattagatcttctttgatttctttcacgaggattttaaagttttact ",null,"+",null,null,31,"PTPRG (intron 2 and down), ASTN2 (intron 9 and up)"]
["MCF7_1-94M14 1","left of chr20:48,863,986 with left of chr20:58,279,243","AGTTTATGCCCAGGGGGTTGCGAAGAACAGCGAGGGCATTCATCTGCTCACAGGCTGGTTAAAAAGGCACGTGGGCTGCAGCCTGCGGGACTCTCATTTCTGAGgccactt@agg@aggcacaggagaatcactcgaacccgggaggtgaaggttgcagtgagccaagatcgagccactgcactccagcctggatgacagagcgagaatccatctcaaaacaataaaaataaaaataaaGGCTGGCCGTTctgactgtgtaccaggtgttgtgctaagcatcttatgagtgttaaattatttgatcttcacaacaacctatttatagatgagactgagacacagggcagcctagttacttgcccagtcacctagttagtgagaagcagaggtgggaacctagccagtctgcttgcagccccagttctcctaagccctgtacta","+",null,null,3,null,"BCAS4 (intron 1 and up), AK092805 (intron 3 and up)"]
["MCF7_1-94M14 2","right of chr20:58,278,817 with right of chr17:56,642,484","GGCTTCTGAGGAAACCCAAACACTGTGCACTGTGCTTCTTCCTACAATACTCCCCCAAGGTTCTTCATCTGCTTCACTGGGAAGTGCAGAGCCTGTGTGT@(GTACGTGCTGCTTCTCCCCTC)@CACAATTTTTCTAAGACAGTGGCTTGTTAACTCTGAAGGCAGGCTTCCTTTGGAACCCTTTAGAAATTTACCTTTATAGTTTATGAGATGATATCCAGAACTCCTAAAGGAGTAAATATTGGAGACAAGACTTNGAAGAGAGAGCCAGCAGTAAGAAGTAAGGGTTCTGAATTTCTTCCCAGCTCATGCCTAGTGGGGTAGAGTAAGATACATC",null,null,"+",null,23,"AK092805 (intron 3 and down), BCAS3 (intron 24 and down)"]
["MCF7_1-21C24","right of chr20:45,722,583 with right of chr17:56,961,498 ","ctatgatagcaccactgcactccagcctgggagacagagctgtcgccccatctctaaaaataaaaaaaaTATATTAAAAAAAGAAAACAAAGCTAAAAGAAAAATGAAGTTCACTTACTAGTGAGAGAGAGTGGCCTAAAAAAAACCTTTGGTATTTAAGGTCCCTTGGGGAAGGGACTGTGTCTAGGAGGATGCCTAGAGTTCATGTCAGGAAAATGGCTACACAGCTTAGGAGGAATTCATACGC@T@TCCAACTCATCACCACAGTATAAACCTGCAAGGAAGCCTTTTTCTTTATCAATTATGAAAAGATATCTGTGGCCTATGACAGAATAACCTAGATTCTGTGAACTGCTCTCAAATGCATGTTGTTCCTTGGGTCTGGGATGTTCCTTGGCCATCTCCTACTCCTAATTCTACGCATG",null,null,"+",1,null,"SULF2 (intron 18 and up) with ig"]
["MCF7_1-110P1 1","left of chr20:53,593,033  with right of chr17:57,449,275 ","ACATGCATCCTCACGTACCTGGATTTGAATCTAACCTATTCTTTTAACTGCTCTGCTGAACAGTGTTTGTTAGCCCTCACTACACTTTTTCTTACCTTTCTTGGGGGCACTGCCCTAAGACAATTAGATATGTGCTTACTTTAATCAGTCTACTAAACTGTAAAATTC@TTGA@TAAACAGGAATTCATTGCCCAATTCGCTTACTTTTGTCCATGTTTGAAGTTTCTAATAACAAAACAGAGTAGAACTAAAATGCTAAAAAAAAAA",null,null,"+",4,null,"catfish Calnexin gene (intron 2 and down), THRAP1 (intron 8 and up)"]
["MCF7_1-110P1 2","left of chr17:57,450,644 with right of chr17:57,543,007","AAAGTTAACAGTACAAGAATAAAAAATAATATAAATTGTAAaaacaatacggtataacaactatttacgtaacacattgtattaggtattataaacaaactacagattgtttaCACTGAAGGgccaggtacagtggctcatgcctgtaaccccaacactttgggaggctgaggtgggtggattacttgaggccaggagtt@c@taaacTTATAAAAAAATATGTAGAGAGAAGCAGAGACAAGAGTTAGAGCTAGAGTCCTGACAGGGCTTGAGCTCTCGGTTCTAGTTGTTCCTGAGGCCCAAGAATACCATTGTCCTTTTCCAGACTTGGTTTTTTCATCAGATACTCCAGCCCTTccaataaattcccctttatagaccagtttgatgtggctttctgccacttgtaatgtaagagccctactaaaacaGGAAAGAAGTAGGGGACTTTGGAATACAGTCTACGTACTAACACCCACAGCAGCATTAGACAGGATACTGATGATCCACAGTCTGATCCACACTGTTATTTTGGTTGCAAGAAACAGACAGTCAATTTACTAGAGACAAGTTACTCATTACTCAAAGACAATTCAAAAGG","+",null,null,1,null,"Deletion (takes out first 8 exons of THRAP1)- THRAP1 (intron 8 and down), THRAP1 (45 Kb 5' flank and up) or mouse EST (intron)"]
["MCF7_1-110P1 3","left of chr17:57,545,690 with left of chr20:61,759,844","GCAGTAAAAAGATGCCTCTGGGGAGGAGGCCCGTGCAG@CT@TGCAGTGCACTTCCAAGCTTAGTCTCCTTGTTCTAGGACTGGTACTGGCTGGTACTGGCCTTTCCGACTTTTATGCTTATTGTTTCCCGTTCTTGTTTGAACTCACTTTTTAAAAAATTTTTGACCCCTTTCATGAAACCCTAGAAAAAATTAAAAATGT",null,null,"+",2,null,"RTEL1 (5' flank and up), but the break is in AF217795 - that looks like a form of RTEL1"]
["MCF7_1-110P1 4","right of chr20:61,759,412 with left of chr20:45,221,699","TCCCCAtctgtgaccttcccaaaacccaggaacccggtgtcatcatgagaaaaacatcggaaaaatcccagttgacaaacattttacaaaatacctgaccagttctccttcacaccgtcctcaaaagcaaggaaagcctgagaaactgtcacaaaccagagaagcctaaggagacaggacaactacgtgtcatgtgatatccaccttggatcctgaaacagtccaagaacagtacagggaaagccttaaaaatctgaataagtaattgacagtagttaacacagcactatctgcttattagttttgacaaatgcagcatactaatgtaagaagttaacaaaaggagaaagtgggtgtggggtgta@AGCCGAACCATATCAGCACGTATGGGGGGCACTGAAACTTGTGCTTGGTGCCCATTCATTCAACGAGTGTGTGTGGCTGGTCTCCTCATCTTCAACTCCCTGCCGAGTCTCAGATAGGCAGCCTGCAGTTCCTTCACCACAACAGGCACATGGGGCTGGGTGCCAGTGAGTGCTGGGGCTTCTCCGAGCACTATCTCACACCCAGGAGCGTGGGCACGCATGGCATTCGCATGTG",null,"+",null,0,null,"CD359807 break in exon 1, EYA2 (intron 10 and up)"]
["MCF7_1-110P1 5","right of chr20:45,218,879 with left of chr17:58,433,646","TCCATCAGTCCATCAATCCACCTTATTTTTTGATGCATTTCAAAGTAATAATCTGCAGACATCTATATGCTTTCTCCTATTTAAGCATGAATATCATTAAGTGGATTTTAGCA@AAGGAGCAGCCAGGAAGTTCATCGGGGCCCTGATGAGCATCATTTTTCTAACGCAAATTTGTCAACAATTTCTGCATTCATGTCTCCAAGCAGCCAAAGACAAAAAGTAATGGAATCAAACCACAGCAGGAGAGTTT",null,null,"+",0,null,"EYA2 (intron 10 and down), mouse EST AK051973 (intron 1 and up),"]
["MCF7_1-110P1 6","right of chr17:58,432,598 with right of chr20:61,766,680 ","TCAGTCGGTACCTATTTGCTGATTTATCATTACATATTTTTGTTTGTATACCATTGTCCATATCAAATCCCTTATAAAGAAATCTGGTCTTgaccaggcgcagtggcttatacctgtaatctcaacactttgggaggtagaggcgggcagatcacttgaggtcagcagttcaagaccagcctggccaatgtggtgaaaccctgtctctactaaaaaatacaaaaaagttagccgggcatgctggcatgcacctgtagtcccagctacttgggagtctgaagcaggagaatcgcttgaacccggatggcaaagggtgcagcgagctgccacaggactccagcctgggcaacagagggagactccatcttggaaaaaaaaaaagaaagaaagaaaaagaaaaaaaaaaaagaaaagaaaagaaaaACGAAAAG@GA@GCCTCTGGGACGGCCCCGCCCCTCGTGCCCCTTCCCCTCGCAGCTCCTGTCCTCGCCCCGCCCTCAGCTCTCCGCCAGGCAAGGTTTGGCAAGTGCCGCTGTGCGGCAGTGCCTGCTGATTGGCTGGTCTGTTGCTATGGTGCTGC",null,"+",null,2,null,"mouse EST AK051973 (intron 1 and down), RTEL1 (intron 6 and down)"]
["MCF7_1-110P1 7","left of chr20:61,767,438 with left of chr20:48,707,010","GAAGTTGCTTCCGAAATATCATAAAGATTGCTGTGATAAACACCTCCAGACTCAAATCTTGGTCTATGTTTGAGGCTCTGTCTTTAGGATGAATTCTCAGAAGTTAAATTGTTGGTCAAATAGTATGATCACTTCCAAGAGCCTTGATATACCATACTTAGCACTGCAAGTTGCTT@TCG@CCCCAACCCACAGAGGCATCTCCCACAAACCCCTGCAGGTGCCCCTGTGATTAGCACCGTCACTCAGCTTCCCTGCCAACCACAACAGGCCCAGAACTTCCAGCTAAGGGAGAGCCAGGTTTTCCTGGGCTAAACAGTGGCCCACTCCCCTCTGCAGCATGGCAGCCCTGG",null,"+",null,3,null,"RTEL1 (intron 6 and up), human EST AA044156 (intron 2 and up)"]
["MCF7_1-110P1 8","right of chr20:48,706,692 with right of chr17:57,562,048","ATTTGACCAACAATTTAACTTCTGAGAATTCATCCTAAAGACAGAGCCTCAAACATAGACCAAGATTTGAGTCTGGAGGTGTTTATCACAGCAATCTTTATGATATTTCGGAAGCAACTTCTATTTCCATCCATAGGAAACGGTTTAAAAACTAATGTAGGGATGGGCCCCCAATGGACTATTTTGCAGTCATTAGAAATGCTTGTGAGTTggccgggcacggtagctcacgcctgtaatcccagcactttgggaggccgaggtg@tcacctgaggtcaggagtttgagaccagcctgaccaacgtggagaaaccccgtctctactaaaaatacaaaattagctgggcgtggtggtgcatgcctgtaatcccagctactcgggagtctgaggcgggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgtgccattgcactccagcctgggcaacaagagcaaaactcccatctcaaaaaaaaaaaaaaaaaGggccgggcgtggtggctcactcctgtaatcccagcactttggga","+",null,null,0,null,"human EST AA044156 (intron 2 and down), ig on chr17"]
["MCF7_1-110P1 9","left of chr17:57,563,833 with left of chr17:57,570,676","tagctgggattacaggtgtgcaccaccacacctagctactttttgtatttttcatagagaaagggtttcactgggcacggtagctcacgcctataatcccagcattttgggaggcagaggcgggtggatcatgaggtcgggagttcaagaccagcctggccaagatggtgaaacctcgtctctactaaaaatacaaaaattagc@cgggcgc@gTGCTGGACCTGGTGCTGCAGCTCTTCCAGGCCAAGGGCTGCCCCTACCTAGGCGTGCCGGCCCCGCCCTCCGAGGCGCCCCAGCCGCCCGAAGCCCACCTGCCGCACAGCGCCGCGCCCGCCCGCAAGGCCGAGCTGCGCCGGGAGCTGGCGCACTGCCAGAAGGTGGCCCGGGAGATGCACAGCCTTGCGGGCGGAAGCGCTGTACCGCCTCTCGCTGGGGCAGCACCTGCGGGGACCGCGTCTTCTGGCGGCCGCCCAACATGGGATTCCGGAGGCGGATTTAACC",null,"+",null,7,null,"Takes out 3' part of homolog of mouse POLRMT."]
["MCF7_1-110P1 10","right of chr17:57,567,781 with right of chr17:58,392,933","TCTGTTTTGTTTTGTTAATTTCCATCTGAAAGCATTGTCTTCTTTGGTGCAAGCAGAAGCAAATTATCTTTTACTAGCAAGGTAAAGAGTTTTGTACAGAAACCTGAGTTAACCAGCACATTTCTCATTTTCGTGGCATCCAGTATGTCCTGGTGCCCTGGGTACCTGGATTTCTTATTCCTTAATATGCTTCTTTCCCCTACCTAAACAGAACTGTGTACTCCCTCTGACCTTCCCCCACCCTTTAACTTGTCTTGATTAGAGGTAATACTTACCATGACATTGTAATTGTTTTTGCATCAATGTCCTTTACAAGACTATGAGCTTGTTTAGGTCAGACACCATATTGCCTTTATAGTGCCTAGTGGGCCCTCAATAAATGAGTGAATAAATGCCATGGGCAGATAGGAAAGATCGACAGGCACTAGACCTGCATATGGGA@C@ATCTAGAAATATTAAATATTCATCAAAAGGCTGAGGTAGAGTTGGTGGGGAAAATGTTGAAGCTATTGGGTAAGTCATTAATTACAGATCAACAAGAAATGAGATTATGAAAAACAATCAATGACAAAAATCTCATTTACATCAACCTTTCAGAAATGCTTCCATTGTGTGACATGGCTCAC",null,null,"+",1,null,"Fuses intron of DB474113 to ig region on chr17"]
["MCF7_1-110P1 11","left of chr17:58,397,035 with right chr20:55,108,872","TGAGAATCCGGGAAAGAATAACTGACACTTGTAGGCTTCGAGAACTCTCAGAGTGATATGTGCCTGAGGTGACCGAAGTGGGGGAGATCTAGGAGAGCATTCCGGTCATCAAAGCAGGAGGACAGGCCCTGAAATGGGCGCACGTGACAGCAGCAGCCACCTCGAGAGTGACATCACCCCTGAGGGCGGAGCCCAACTATGTAGGGCCTTGTCAGTTACCGAGCTTCCTCCCTGCTGC@CC@AGTCTGtcacatggcaagacagaaagcaagagagagaaacagaggtgtcaggctcttgtaaacaaccagctctcggagaaactcccagagtgagcactcactcatcaccatgagagggcactgagccattcgtgaggaatctgcccctacgaccgaaactcctgccaccagacccacctccaacactggggttcccctttctcacgagagatttgtgggggacacatcctacaccatatcacaagggctagaaacctgatcaagctcacagcagcttcagcaggagaagaacttcactggctcctgtggttggaaatttgggggaggacnatttggctccagacatggctgaagataaaggctcgcatcaagagtttgtTAACCTTAGTTAGACTCCTGACATTCAGGATGGGACCACCTCTGATGATGTGGAGGAATGGTATCTTCAGGCTCTGTCCAT",null,null,"+",2,null,"Fuses intron of DB474113 to intron of mouse AJ409479"]
["MCF7_1-147K12 1","left of chr20:48,863,986 with left of chr20:58,279,243","TTTATGCCCAGGGGGTTGCGAAGAACAGCGAGGGCATTCATCTGCTCACCGGCTGGTTAAAAAGGCACGTGGGCTGCAGCCTGCGGGACTCTCATTTCTGAGgccactt@agg@aggcacaggagaatcactcgaacccgggaggtgaaggttgcagtgagccaagatcgagccactgcactccagcctggatgacagagcgagaatccatctcaaaacaataaaaataaaaataaaGGCTGGCCGTTctgactgtgtaccaggtgttgtgctaagcatcttatgagtgttaaattatttgatcttcacaacaacctatttatagatgagactgagacacagggcagcctagttacttgcccagtcacctagttagtgagaagcagaggtgggaacctagccagtctgcttgcagccccagttctcctaagccctgtactaGGCTTCTGAGGAAACCCAAACACTGTCCACTGGTCTTCCTAAAACACTCCCCCAAAGTTCTTCATCTGCTTCACTGGCAAGTGCACAGCCTGGGTGTATGCGTGCCACTTCCCTC@CACA@ATTTTTCTAATACAGTGGCTTGTTAACTCTGAAGGCAGGCTTCCTTTGGAACCCTTTAGAAATTTACCTTTATAGTTTATGAGATGATATCCAGAACTCCTAAAGGAGTAAATATTGGAGACCAGACTTG",null,"+",null,3,null,"BCAS4 (intron 1 and up), AK092805 (intron 3 and up)"]
["MCF7_1-147K12 2","right of chr20:58,278,795 with right of chr17:56,642,484 ","TTTATGCCCAGGGGGTTGCGAAGAACAGCGAGGGCATTCATCTGCTCACCGGCTGGTTAAAAAGGCACGTGGGCTGCAGCCTGCGGGACTCTCATTTCTGAGgccactt@agg@aggcacaggagaatcactcgaacccgggaggtgaaggttgcagtgagccaagatcgagccactgcactccagcctggatgacagagcgagaatccatctcaaaacaataaaaataaaaataaaGGCTGGCCGTTctgactgtgtaccaggtgttgtgctaagcatcttatgagtgttaaattatttgatcttcacaacaacctatttatagatgagactgagacacagggcagcctagttacttgcccagtcacctagttagtgagaagcagaggtgggaacctagccagtctgcttgcagccccagttctcctaagccctgtactaGGCTTCTGAGGAAACCCAAACACTGTCCACTGGTCTTCCTAAAACACTCCCCCAAAGTTCTTCATCTGCTTCACTGGCAAGTGCACAGCCTGGGTGTATGCGTGCCACTTCCCTC@CACA@ATTTTTCTAATACAGTGGCTTGTTAACTCTGAAGGCAGGCTTCCTTTGGAACCCTTTAGAAATTTACCTTTATAGTTTATGAGATGATATCCAGAACTCCTAAAGGAGTAAATATTGGAGACCAGACTTG",null,null,"+",4,null,"AK092805 (intron 3 and down), BCAS3 (intron 24 and down)"]
["MCF7_1-7J14 1","left of chr17:56,234,249 with right of chr3:63,679,167","TCTCTTGTGTTTTTGTTCTTCTCTCTGGGAATTTTCTTAAATTTGCCTCTGATTCTTGTGTTGAGTTTAAAAACAATATATGCCTgcctgtaatcccagcactttgtgaggccaaggcaagcagatcacctgaggtcaggagt@ttg@TTTATTTGATTTGTTTATTGTAACTCTTCTATTTAGATGAAATGGACCTTGCTAATATTCTTTATCCTTACATTTACCTATGTCCTTCTCAGGATCTTTGTTGAGTGCCTGGGTAGAGCATCCAGAAAGGGTCTATGAACACACAATGTCACAACAATGCCAAGGACTTTATGATAGTGATAAATGAACTTCAAC",null,"+",null,3,null,"BCAS3 (intron 5 and up) ig on chr3"]
["MCF7_1-7J14 2","left of chr3:63,716,502  with right of chr3:63,952,995","TTCAAATGCCCACCATTACACACAATATAAAAGGCCCTTAGAAACAAATTTCATTTGGGCAGAGATATGATTAAAGTGAGAATATGAGCCAATGGAAGATAAGCATTACAGTCTTTGGCAGAGGTTCTGAGGTAAAACATTGTTGGTGTGTTGGAAAAACAACAAATGTTTCATGTGG@C@ATCCCAGATCCTCTGTTTGGGCATTATTTACTAGTGCCTCCTTAAATGGACTCTGCCAGTACATTCATTTGACTCCCTGCCTTGGTTTCCTAATAAAGTCAGACGCTAGTCGGAGGCCTTGGATTGTCTGCAACCCAAAGAACCATCTCCATGATCATTAGCAGGACTTACATCCGTTTCCTTAGAACACCAGATTCAGAGCACTGTTACTCTGCTTTTCT\n",null,"+",null,1,null,"Deletion fuses intergenic region with the last exon of ATXN7 gene."]
["MCF7_1-30j11","left of chr16:69,760,074 with right of chr1:143,591,935","cttactcctcctacttctcatcaccttcactgtcaccaccctcatccaaacttccttatcttttacctgaactactatagtagcctcTGCCCCCTGTATGCATCAGGGATCAGTCAGCTACGTTATAAAAGGAAAAAGAGcaaaatcagagcagtttacactaggcagaagtttatttatcttatacaaagaagtccagaggtaggtaggccaggtcggtagggtggctcaacagtgtcatcagagactcaaattcctaaattcctgctctaccattctagcatgcagttcccatcctcGATGTCACCCTGTGGGGCAG@AGT@tgtaaccacccaatgggttcttccagcctgctccccagagagagccaatttatcaagacagggcaattgcaatagagaaagttttacacatatagaactggctaaacaggagactagagttttattattacgcaaatcaaccgccctgaaaatttggagactatggttttttaaagat","+",null,null,3,null,"HYDIN (intron 5 and down), a bunch of mRNAs on chr1"]
["2B421_023_O08","left of chr16:69,760,074 with right of chr1:143,591,935","TTAAGGAAAGAGCAATCAGAGCAGTTTACCtaggcagaatttatttatcttatacaagaagtccagaggtaggtaggccaggtcggtagggtggctcaacagtgtcatcagagactcaaattcctaaattcctgctctaccattctagcatgCAGTTCCCATCCTCGATGTCACCCTGTNGGGGCAG@AGT@tgtaaccacccaatgggttcttccagcctgctccccagagagagccaatttatcaagacagggcaattgcaatagagaaagtttacacatatagaactggctaaacaggagaactagagttttattattacgcaaatcaaccgccctgaaaatttgagaactatggttttttaaagatatttaggaagaaggggggtggctangggaatg","+",null,null,3,null,"HYDIN (intron 5 and down), a bunch of mRNAs on chr1"]
["CH510-6A22","left of chr16:54,892,457 with right of chr8:71,412,946","AATGTGTGGAGTTTTACTTAAGCCTCATTTTATAAATCAGACCATTTGACTTGTCTCCCACTAACTTGTCAAAGTTCCAGCGAGCAAGTTTTAGTTCCAGAAGCCAGATGCTTGCCACTGCCAGCTCCCTGAGGTGGGCGTTCCTCACCAGCCCCATTCCCTGCTGAGCAACCACGGGCCC@(C)@gtttgttgaaaaagttaataaaatggatagactgctagctagaccaataaagaacgacaatctagagaagaatccaataagccccatccgaaataataaggcgattatcaccacccaccccacaaaataccacccttagagaatcctataaacactttccttgcgcct",null,"+",null,null,1,"GNAO1 (intron 2 and up), NCOA2 (intron 1 and up)"]
["CH510-7M17","left of chr22:30,235,279 with right of chr5:132,726,288","tgtgtcctttgattaccatcttcccaattctccctactcctagcctttggtaaccaccattctcctctctgtttctatgcattcaattattttagattccacatataagtgagaacaggtcatatttgtctttgtgtgtttggagtatttcacttaatataatgttctccaTTTC@C@AGGCAAAAGAACACAAGGGCGAGGCTGAGCACAGGAGGTGCTTCCAGGCCTGGCCCCTGCTCTCCGGGAACTCCTTCCCATAGTCTCAGCAGCCATTTCTAGATCCTAGTTAATTTCTATTTTAAAAGCATCATCTCATACTTTTATTTTAACTCATCAATTACTATGCCTTTA ",null,"+",null,1,null,"SFI1 (intron 2 and up), FSTL4 (intron 4 and up)"]
["CH510-8D12","right of chr20:43,174,145 with left of chr20:48,124,821  ","TTTGAGGCCTGCGCACCTTTGACTTGGACTTGTGAATTCAGGGCTAAACCTTGGACCTCAGACAGTTTCCCAGGAACCCTCCCATCACCCCCACCACCCCAAACCCACACTTTTTCCCCCTCCCCACGCCAAGCCTCTCTTTCTCCAGCAGGGGGCAGCAATTTAATTTAAA@(TAC)@ACTCCCATGCCCAGTGTATTTTAACTATCTCATTCATTGCAGTAGTTATTCCTTTGTCCCTCTTGCAGGTGGGCGCCTCATCTGGCTTCTTCACTGCCATGAACCCAGTGTTAAAAATAGTGTTGAAggctgggcacagtggctcacgcctgtaatcccagcattttgggaggccaaggtgggtggatcacctgagatcaggaggtcgagaccagccctggccagcatggtgaaaccccatctctactagcaatacaaaaattagctgggcgtag",null,"+",null,null,3,"WFDC5 (intron 1 and up), SNAI1 (86 kb 3' flank and up)"]
["CH510-10K19","left of chr5:42,528,209 with right of chr8:66,867,815  ","aaagtatttccgcccaaatactttatctctgggtgtgtttgttcaactaggagtgtgcctaattgtagcatggggctctgtttggttcttaagaatgtcaccagagactttctaagtgcttttagtatcataaggtgatgttttctggacctgaagacttgaattgt@t@ttaaTTTTTATTTATACCACCCATATTTTATTTATCTCTTTCCTAATCTTCTCATTCCTCAGTATTAGCCCTAATTTTTTCCCAATATTATCCACTATATGGATTTACTGCTTTTAAAAATTCAGCCTTTTGCCAGATCATTACAAGGTCACAATCTAGTAGTTTGAAAAGCAAAACTATAGGCTTCATGGTGGCAATACACACGCAGACATAAAAGTAATACCATTATGCA",null,null,"+",1,null,"GHR (intron 1 and up); PDE7A (intron 1 and up)"]
["CH518-1P6","right of chr17:35,334,374 (reads up to chr17:35,489,897) with left of chr17:43,748,460 (reads up to chr17:43,727,606)","CACACATACACACCCACATACACCCAGCACACAGACACACACACACCTAGTACACAAACACACACACAGATACATAGAAACACACACAGACATATACACNCAGCACACAGACACACACACA@CA@CACAGACACACACCCAGCACACAGGCACACACACACACACACCTAGCACACAGCCACACAGATACATAGACACACACACACATAAAGCAATAGCAAGCTTCTTCAGAAAGTCACTGAATTTTGGGCATGGGGAGATATGGTAAGTTATACTGCAGGTCTTGACCATTTCATGCTGCTGCTTTAAAGGCAGAATTACTCTTATGCTGTTGAATTTATCATACACAATTACTGATACTGCAACTCATAAGGAAGTTAAGCAAAGTTTCAGAACAAATAAATGAGGTAACAATTTTTCAAATCTAAAGGATTTTGAAGAGGATTGTCACTGCAAACTATAAACTACTGTAAGATTCTTGGTCTAGAACAATCTCTTGTGGATTATTTAGACAATTTTTAAAAAAGCACACTGGGGCAAGTTCATTTTTCTAACTTGAAAATATACGTCGTAAAACTTAATTAAAGGCTCAAACTTAAGAAAGACACATTCATAAAAAATCTACATTTGAGTTAGATTGTGAAATCTATGTAGTTTTCAATATAATATATTAATATCTGTAATCCTTAAGCTGTAATTTTTACAAATATGTTTTCCAAGAGCTGCATAAATTAACTTCTTTATGTATTGTATATGTTATAAATAACTAGAAGAANNNAGCGTAGGTGCTCACCCCGC\n",null,"+",null,2,null,"THRA (intron7 and up) fused to SCAP1 (intron 4 and down)"]
["CH518-6N02 1","left of chr17:35,237,100-35,237,235 with left of chr20:56,424,798-56,425,316","tcttgtagagtaccttgaagaagaggtcagtgtaaggaataaacaaatacttaaatttgggatcctcacaccacaacttcataagggggagagggtgaactgaggtatcccgtaggtggttgaggtgtgtgtgcttgtgagttttctgtatttctttgcagttgggttcagcgaggagcagttttctgtgttcaccagtgttgatagcagacaaaatcacacagaaacaaatacgaaaattgttttatgtccagaatgtccctctaatatgcacatgagtaacgttggatcaaatttatgttttcaaaataagtctcatagcagaactagctgtcgtttgattttgggattgagtcccatttccttccttccttatcaccattttgatttcttaatttgtattaaggtaagcccatatcagattgattttttttttttccatgcccggagcacctcaagagtagagacaccagcctgaggatcttaattttgctggagataatccacacacaggtagt@t@ctcactgtgttgcccaggctggagtgcagtagcaggatcacagctcactgcagcctcaacctcccaggctcaagtgatcctccagccttagcctcctgagtagctgggactacaggcacacaccaccacacctggagccaaaacagtatgcgaaatggtaatcactaaatccaaattcttccatttgtgataggaggcgatccttttgaagaatactctgacgtaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCACATCTCTTCAGCTGTCCTTTGTCCCATTGAGTTGGCTGTCAGCCTGGTTCTGCAGCTTGGGTTGTCTGACATTTTTATTTGGTAACTTGAACCAATTGCTTATTTAGAATAGGTACAAACCCTCATGGGATTTAGTGTTTGACAGCAATTGTTGCAGTTGAGTAGTTTGAATAGGCTAAAACAGAAAAGTTACAAAAAGATGACAGAAATAATGTGAAACTCAGGAAAAATGGAGTAGAAATGACTACCTAAACTGCCCTCATTTTGAGTGAGAGGAAACTTTTATTTTAGATAAAACCTATTGCATGATGTTAGGAGCTGGCCAACTGAATTCTGATGGCTTGCAGTGCTTCTGCTTTTTATCCTAATGGCATCTTTGGTTTTATCAAGGAGTTGGATTTCTAATTTGATAAAGGAAATCCAACTTATTTGGATAAAGCTTATCCAAATAAAAAGAAATGTTTACCCCCTTATAAAAAACAAACAGGTCATACACAGTGGTACACACCTGTAGTCCTAGCTGCTGAGGAGGCTGAGGCAAGAGGATTGCTTGAGCCCAGGAGCTCAAGCCCAACCTGGGCAACAAAGCAAGACACCATCTCTAAAACAATAATAATAAAATAAAAAGAAAAACCTAATATTTGGGTTTTGACATCTTCTCTTTGTTTTGCTTTTATCTGAGTCTGCTTGCTAGGAAAGATTTTGACATCTTAAGTGGCATGCTTCATGGCAGTCAGGCAGTACTCGCTCAAGGACGGAATGTAGGCATTCTGGTCCCACACG",null,"+",null,1,null,"VAPB (intron 1 and up) fused to ZNFN1A3 (intron 6 and up)"]
["CH518-6N02 2","left of chr17:35,237,100-35,237,235 with right of chr17:35,195,805-35,198,435","tcttgtagagtaccttgaagaagaggtcagtgtaaggaataaacaaatacttaaatttgggatcctcacaccacaacttcataagggggagagggtgaactgaggtatcccgtaggtggttgaggtgtgtgtgcttgtgagttttctgtatttctttgcagttgggttcagcgaggagcagttttctgtgttcaccagtgttgatagcagacaaaatcacacagaaacaaatacgaaaattgttttatgtccagaatgtccctctaatatgcacatgagtaacgttggatcaaatttatgttttcaaaataagtctcatagcagaactagctgtcgtttgattttgggattgagtcccatttccttccttccttatcaccattttgatttcttaatttgtattaaggtaagcccatatcagattgattttttttttttccatgcccggagcacctcaagagtagagacaccagcctgaggatcttaattttgctggagataatccacacacaggtagttctcactgtgttgcccaggctggagtgcagtagcaggatcacagctcactgcagcctcaacctcccaggctcaagtgatcctccagccttagcctcctgagtagctgggactacaggcacacaccaccac@acctgg@agccaaaacagtatgcgaaatggtaatcactaaatccaaattcttccatttgtgataggaggcgatccttttgaagaatactctgacgtaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCACATCTCTTCAGCTGTCCTTTGTCCCATTGAGTTGGCTGTCAGCCTGGTTCTGCAGCTTGGGTTGTCTGACATTTTTATTTGGTAACTTGAACCAATTGCTTATTTAGAATAGGTACAAACCCTCATGGGATTTAGTGTTTGACAGCAATTGTTGCAGTTGAGTAGTTTGAATAGGCTAAAACAGAAAAGTTACAAAAAGATGACAGAAATAATGTGAAACTCAGGAAAAATGGAGTAGAAATGACTACCTAAACTGCCCTCATTTTGAGTGAGAGGAAACTTTTATTTTAGATAAAACCTATTGCATGATGTTAGGAGCTGGCCAACTGAATTCTGATGGCTTGCAGTGCTTCTGCTTTTTATCCTAATGGCATCTTTGGTTTTATCAAGGAGTTGGATTTCTAATTTGATAAAGGAAATCCAACTTATTTGGATAAAGCTTATCCAAATAAAAAGAAATGTTTACCCCCTTATAAAAAACAAACAGGTCATACACAGTGGTACACACCTGTAGTCCTAGCTGCTGAGGAGGCTGAGGCAAGAGGATTGCTTGAGCCCAGGAGCTCAAGCCCAACCTGGGCAACAAAGCAAGACACCATCTCTAAAACAATAATAATAAAATAAAAAGAAAAACCTAATATTTGGGTTTTGACATCTTCTCTTTGTTTTGCTTTTATCTGAGTCTGCTTGCTAGGAAAGATTTTGACATCTTAAGTGGCATGCTTCATGGCAGTCAGGCAGTACTCGCTCAAGGACGGAATGTAGGCATTCTGGTCCCACACG","+",null,null,6,null,"ZNFN1A3 (intron 6 and down) to ZNFN1A3 (intron 3 and up)"]
["CH518-8H16","right of 32,418,153 with right of chr20:55,063,353",null,"N/A","N/A","N/A","N/A","N/A","AATF (intron 4 and down) is fused to intergenic region on chr20"]
["MCF7-6B19",null,null,"N/A","N/A","N/A","N/A","N/A","PECAM1 (exon 12 and down) and AK057923 (exon 4 and up)"]
["CH518-4I7 1","right of chr17:55134872 with left of chr17:61929082","CCAGCCTGGGCAACATAATGAAACCCCTGTGTCTTAAAAAAAAAAGTTTTTTTTTAAATTAGCAGTGTGTGGTGGTATGTGCTTGTAGTCCCAGCTACTGGGGAGGTTGAAGTGGGAGGATTGCTTGAGCTCAGGAGTTCGAGGCTGCAGTGAGCTATGATCACTCCACTGTATTCCAGCCTGGACAAAAGAGTGAAACCCTGTCTCTTAGAAAAGGAAATAGAAGTTGGAAATAAATTTAATACACCTAACCTACCAAACATGGTAGTTTAGCCTAGCCTACCTTAAAGGTGCTCAGAACACTTAATTTATTAGCGTACAATAGGGCAAAATCATCTAACATAAGGCCTACAAGTGTTGAATATCTCATGTAATTCtTTGAATACTGTACTGAAGGTGAAAAACAGAATGTTTGTATGGGTAAAGTTTCTACTGAATATGTGTTGCTTTTGAACCATTGTAAAGCCAAAAAGCTTAAGCGAAACTACAGTAAGTCCATGACCAGCTCTA@T@gggattacaggtgtgagccactgtgtctggccctttttaaaattcattttctctgtgtgtcttaagtgagaaagctacaaagcagcactttgacagaataataccaagctcagtcctgctcttagggccacaatgtacaactccccctgccctgcagctttctttttttttgagacgagtctcgctctgttgcccaggttggagtgcagtggtgcgatctcggctcactgcaagctccgcctcctg","+",null,null,1,null,"PTRH2 (exon 2(3) and UTR) fused to PRKCA (exon 3 and up)"]
["CH518-4I7 2","left of chr17:62018355 with right of chr17:56685379","gggcacgggcagtgattcgagctcggtaccctgttgttgttttaaagacagggtcttgccctgttacccaggctggaatgtagcggcatgatcagggctcgctgtagccttgacttcccagcctcaagcaattgtccttcctcagccccacaagtacctaggactacaggcgtgcaccaccatgcccagctaattttttttttttttattttagtagggatgaggtcttgccgtgttgcccaggctggtcttgaactcccgggctcaaatgatcctcccactttggtctcccagggtgttaggattacaggtgtgagccactgtgcctggccatatttgcagcttgttaatacttacaaggaaactgttagaacagaaaaagaatcattccctcagccatttaaaagcatcctaaaatcaagttcttgttttaagatagttttcattcattgttctggtacttcctaaatagtttcttcccagtaaaagtgcccccactttggtggtttaattataggccatgaggatttgctttttccgtctaaggttggaagaaaaagttggtttgctgctataggaaatgagtagaagctctgttgccctcgacagccttgtggagttgtcctggaagcctatgtccagagctgtc@[gt]@GAAACTGAGACTGAGACATAGAACAGTTAGGCAAGTAGTAGGAACAAATGGTATAGCAACGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGGCCTTTGGGAGGCCGAGGCaAAGTGGATCACCTGAGGTCA",null,"+",null,null,2,"PRKCA (exons 3 and up) fused to BRCA3 (exons 23(24) and down)"]
["CH518-4I7 3","right of chr17:61968822 with left of chr17:62008491",null,"N/A","N/A","N/A","N/A","N/A","local rearrangement in intron 3 of PRKCA"]
["CH518-4I7 4","right of chr17:55168397 with right of chr17:61932769",null,"N/A","N/A","N/A","N/A","N/A","TMEM49 (exons 4 and down) fused to PRKCA (exons 4 and down)"]
["CH518-8K21 1","left of chr20:50184195 with right of chr20:57661696","tgggaggacggacagtaatcgagctcggtacccaaaattacaaaaattaaccaggcatggtggcaagcacctctaatcccagctacttagaAGGCTGAGacaGGAaaATCgCtTGAaCCCGGGAGGcGaAGGTTGCAGTGAGCagagatg@GT@CCCTGTATTTGTAATTTTACATTTTTTAAAAAAAATACACTTCAGGCCCCATAAAAGCTAGATCTACTCCTGATTTAAAGTCAGATTTTATCCAGGCTGCCTCTCTGCTAAATTTCTCATCTACTCAGGAGAGAAGCTTGCCTGTTCTGTTTCTGGAAGCCAAGCCTTCCACAGTAAGCCACTGAAAACATGAACTCAAATTTGCAGGTGTTTTACAGCAGAGTCACTGATTTATATAAGCAGGGGGTTATTAAGATATCTCAGTTTGGTGGCAAGCACCCTGTTTATTTAATCAAGTGTCATTGTGACTTAAGCCAGAGCTGCTGGGGGACTGACAACTTTTCAGCCTAAAGCTGCTTCTTTGCGATGCTTTCAGGAAGGGTGGCATCAAGGTTCACAAACTGCCTTATGGCTTTTCAAGAGTTTATAGGCCATTCCCACGATAGGAAACACAGTGACTTGGAACGTTCCAGGAAGGGGTTTCATATGTTTGTTTAATCACATGCCGATAACAACAACAACAATAAaCAACAGTAAAAAATCCTACAGAAGGTCTAATTTTTAAACAGAATTCTCCATTCCAACATAAAGAGAAGCCATAAAAaTACAAA",null,"+",null,2,null,"PHACTR3 (exons 2 and down) fused to ZFP64 (exons 6 and down)"]
["CH518-8K21 2","left of chr20:57,680,688-57,681,337, right of chr20:57,700,808-57,701,500",null,"N/A","N/A","N/A","N/A","N/A","Rearrangement in intron 1 of PHACTR3"]
["CH518-8K21 3","right of chr20:50,231,155-50,231,833 with right of chr20:50,186,182-50,188,704",null,"N/A","N/A","N/A","N/A","N/A","rearrangement between introns 2 and 5 of PHACTR3 gene"]
["CH518-8M5 1","left of chr17:35496993 with right of chr17:43725074",null,"N/A","N/A","N/A","N/A","N/A","SCAP1 (exons 4 and up) fused to THRA (exons 7 and up)"]
["CH518-8M5 2","right of chr17:35,316,653-35,317,199 with left of chr17:35,395,445-35,396,202",null,"N/A","N/A","N/A","N/A","N/A","PSMD3 (exons 3 and up) fused to CSDML (exons 6 and up)"]
["CH518-8M5 3","right of chr17:35,364,368-35,364,863 with riht of chr17:35,364,368-35,364,863",null,"N/A","N/A","N/A","N/A","N/A","end of 3'UTR of THRAP4 fused to intergenic region"]
["CH518-8M5 4","right of chr17:35,338,849-35,339,616 with right of chr17:35,394,244-35,395,019",null,"N/A","N/A","N/A","N/A","N/A","AK091224 fused to PSMD3 (exons 3 and down)"]
["CH520-15P18 1","left of chr20:40,732,442-40,733,202 with left of chr20:33,957,011-33,957,760",null,"N/A","N/A","N/A","N/A","N/A","PTPRT (exons 7  and down) fused to PHF20 (exons 9 and up)"]
["CH520-15P18 2","right of chr20:33,944,627-33,945,400 with left of chr20:33,955,617-33,956,133",null,"N/A","N/A","N/A","N/A","N/A","BP is around exon 8(9) of PHF20"]
["CH520-15P18 3","left of chr20:40,779,006-40,779,777 with right of chr20:33,940,332-33,941,101",null,"N/A","N/A","N/A","N/A","N/A","PTPRT (exons 6 and up) fused to PHF20 exons 11 and down)"]
["CH520-23A9 1","left of chr20:13,368,647 with left of chr20:13,301,463",null,"N/A","N/A","N/A","N/A","N/A","PCSK2 (exons 4 and down) fused to TASP1 (exons 9 and up)"]
["CH520-23A9 2","left of chr20:40,759,072 with left of chr20:17,261,559",null,"N/A","N/A","N/A","N/A","N/A","exons 11(12) and down of TASP1 fused to IG region."]
["CH520-23A9 3","right of chr20 chr20:40759081 with right of chr20:17262227","gggcaagggcagtgattcgagctcggtaccCTGCTCTAAAAATGAAAAGTTTTGAAAAGCACAAGTCACCCTAAATTGGATCCTGGGTTGTTTTTTGATGGGGGCATAAAGAACATCATTGGGACAATTGATCAAATTTGAATAAGGTATAGATTAGATAATAGTATTGTATCAATGTTAATTTCCCAATGTTCACAACTGAACTGTGGCTATGTAAGAGAAAGTGACTGTTTCTAGGAAACACATACTGAAGTTTTTTAACTTCAGAGAGCATACTGTTTGCAACTTTCAAACAGTTCAGAAAAAAATGATTTTGCATATGTCGTATGTGTAGAAAAAGAATGATAAAGCAAATGTGGTAAAATGTTATATTTAGAAAATCTGAATGAAGAGTATGTAGGAATTCTAAATACTCTTTTCCCAATTTTTGTATTATTTCCAAATTAAAAGTTTACAAAGAAAAAGCAAGTAGATCCACCATGACTTGTGCTCCAAATGTATGCAACTGATTTTGCAGAATCTCATGCTTCATGCTCTATCCTGTTTTGGAGCATAACTTTCCTCCCTCCAAAGGAAACAAGAGACACCTATGGAAATGCTGATGGAGCGAGGGTGGTCACCAGGCATGGAGCAGCACAGGAACACAAGCTTCTTGAGGCCTCCCAACTTGATAATCTTCACAGCTGGAAATGTCCCCC@T@aatgtagcttaatattaccagactttttttgtgtcttaaaaaagtcttagcttgaagttaatataataaaaaggtacaagtggatgcaccagagaa",null,null,"+",1,null,"PCSK2 (exons 3 and up) and PTPRT (exons 7 and down)"]
["CH520-17A7 1","left of chr20:52,736,656-52,737,431 fused to right of chr20:19,235,323-19,236,100",null,"N/A","N/A","N/A","N/A","N/A","BP is around exon 2 of SLC24A3"]
["CH520-17A7 2","left of chr20:35,196,699-35,197,110 with right of chr20:19,278,238-19,278,610","aaggggattgggaattcgagctcggtaccctccttgctcccctgtgacataatgaacttcaggtaaatgacaaaaatataatcagaataacatttcctggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagattgagaccacggtgaaaccccctctctactaaaaatactgtaatcccagcactctgggaggccgaggcgggcggatcacgaggtcaggagattgagaccacggtgaaaccccatctctactaaaaatacaaaaaattagctgggtggtggcgggtgcctgtagtcccagctacttgggaggctaagccaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagttcgcgccactgcactccagcctgggtgacag@AG@TCTTTGAGTGAAACAATAATTTCATCTGAAGCTTAGAAACATATGCCACACAGTGGTAACCTGTGTAGGCAAAACACCAACCAGAGCAAATCAAAGGATGATAAAAACCAAAGCAGCCAGAGAGTTGGAAAGGAAGATTACTTGGGAGTCATTCAATCTGAATTTGGGTTCCTCAGAAGTAGAGCTTAAGACAAAGATACATGTGAGGAGAAAGGGATAGGGAATAAAGGAGCCAACAAAGGAGTCAACAAAGTAATTTATCAAGCCAGTTACTGCTGTGGGCAACTGAAGCTCCATCCTGCTGGGGGCCTCCAGAAAACCACACAGAGCATGCACCTCAGAGCCATCCCATCGAATAGGCAAGG","+",null,null,2,null,"C20orf132 (exon 13/3'UTR) fused to SLC24A3 (exons 3 and down)"]
["CH520-17A7 3","left of chr20:19,227,646-19,227,867 with right of chr20:19,188,795-19,189,568",null,"N/A","N/A","N/A","N/A","N/A","SLC24A3 (exons 3 and down) are fused to ig region."]
["CH520-17A7 4","left of chr20:52,760,093-52,760,242 with left of chr20:52,753,904-52,754,655",null,"N/A","N/A","N/A","N/A","N/A","ig region"]
["CH520-17A7 5","left of chr20:19,259,621-19,260,367 with left of chr20:19,147,447-19,148,150",null,"N/A","N/A","N/A","N/A","N/A","BP around exon 2 of SLC24A3"]
["CH520-2B1 1","left with chr5:158,224,664-158,225,297 with right of chr8:108,959,174-108,959,305","AATAATTTAAATCAGAGAAACCGGCCCACCTTCTCTTCCCAGGACTCTTTTCCAGGATAAACCTATTTTAGTTATCCACCCCTTCAAGATAGGATTCACAAACCCTTCCCATCCTGTTCACCCTTTTCCAAATACTCTCTGATTAGCCAACACCCCTCCTCAATTATGCCAGAACTGAGCAAGCCTCCAAAATGTTAGAGGCAGCACAGCAGGTTGGTTATGACATGAACTTGGTTTAAAAAGGTTCCAGTCTGGGCCCTACCACTTATCAGTTGTGTGATCATAACCAAGTCACTTAACCTTTCTAAGCCTCTGCCTCCTTATCTGTAAAATGAGAACTATAGTATCTACCTTGAAGGATTATTGTGAGAAATAAGTAAGAATATATATGAAGTTCCAAGGGCTGTGGATGGCATATAGTAAATGCTCAGTAAGGTTAAGCTAGTACAAATTTGATGATGATGATAATGGTGATAATGGGATCACAATCATTTCCATCTTGATCTAAAATCTGCATTTGTTCAAATTCAAGTTTAAGATATATTTGTTGTGCCGTGTTGTGTTGTGTTTGCTGTAGTAGAGTAGGGGAATAGCAGCCATTTACAGTTCTACTAAAACTTTTCCCCCAGA@TCTT@caaaaacttccacaagaccctaaattttactcttcctatgatatactcttcctcaatgcacagccataattaaagaaaaactactctatgaattgctctcagttttcaaatttgaagaaaagttaatg",null,null,"+",4,null,"intron 1 (and down) of KCNQ3 fused to ig region"]
["CH520-2B1 2","left of chr8:133,424,794-133,425,571 with right of chr8:133,395,225-133,395,987",null,"N/A","N/A","N/A","N/A","N/A","intron 4 (and down) of EBF1 fused to ig region"]
["CH520-2B1 3","right of chr8:133,374,023-133,374,379 with left of chr8:108,948,230-108,948,628","AATCTACACCAGCAAGGCTTGTCCATTCAAACTTTTCTTGGCCTCTCTGTTTAGCATTCCTTCCTCTAGGTATGGGGCAGGAATCTCTCTGGATTAGGGTCTTCTGATCCACAATCAGATTAGAGTCTGGCACTGGGCAGGTGAAAGAAGGACATGAAGAAGGTCAGAGAGAGATTCTGTTTCCTGAGGCCCAAAGTGCCCCAATATTATAACAAGGACTATGGGAGTTAGGAGCCAGGAACCATGGATGAAAACCAATTATATATCATAACACCACACGAGTGCCCTTGGAAGTTTGTGTTTTTTACTGAACCTAAGACAGATGAATATCCATGTATCCAACTCTCCATCCACCC@A@aaagattgcagtgaagtttgtgcttcatttaatctttcacagctaacacaccatggttactaaaatttgaactgtgttgttaaggcactggtattatttaattaaacatgatcattgaaatccatgtatctcagcactgtgcaaaatgaggactgtgggtacattggttgtccagtttgccttggaggacagatgacctaaggtatagattggtagtgatccttaggcacaatttggacacacagagactcagaaggaaggatttttgcatattagagatttggggaaggtttatgtggatagccccttcaaaataggcccagggtgaaagaataatatgtgtgaatgttcactgaagctcccctctgtagaacagtctctcagtaacaggaacagga","+",null,null,1,null,"BP in intron 1 of KCNQ3"]
["CH520-12B18 1","right of chr8:121,052,083-121,052,372 with left of chr8:121,085,998-121,086,744",null,"N/A","N/A","N/A","N/A","N/A","BP in intron 4 and intron 6 of DEPDC6"]
["CH520-12B18 2","left of chr8:116,763,892-116,764,658 with left of chr8:121,173,552-121,174,307",null,"N/A","N/A","N/A","N/A","N/A","BC03612 (exons 2 and up) fused to BP357146 (exons 3 and down, could be a part of TRPS1)"]
["CH520-12B18 3","right of chr8:121,061,861-121,062,639 with left of chr8:121,107,140-121,107,912",null,"N/A","N/A","N/A","N/A","N/A","BPs in introns 4 and 8 of DEPDC6"]
["CH520-12I13 1","left of chr15:43,537,484-43,538,254 with left of chr15:43,578,568-43,579,325",null,"N/A","N/A","N/A","N/A","N/A","intron 2 (and down) of AK056686 fused to intron 3 and down of SLC30A4"]
["CH520-12I13 2","right of chr15:43,545,860-43,546,605 with right of chr15:43,574,557-43,575,312",null,"N/A","N/A","N/A","N/A","N/A","intron 3 of SLC30A4 fused to intron 2 of AK056686"]
["CH520-12I13 3","right of chr15:83,942,006-83,943,416 with left of chr15:43,669,729-43,670,808",null,"N/A","N/A","N/A","N/A","N/A","intron 1 and up of PLDN fused to intron 8 and down of AKAP13"]
["CH520-12I13 4","left of chr15:43672172 with right of chr15:83941823","CCTCCAAGTATCTGTATCAGAAGGCAATTTGCTAAAAGGAAGTACTGCAGAGTCACCAGTGCAGCAGATGCAC@ACAG@atctctggcaacttatttgaaccagcaactgaaaacaagcgtgacttttatggaggcaatttttcaactctactcagaaacaggtgtatctccacctgaacaatccccaataggcaatactttcataaaataatgataaatgccaaacctaatcacagattctaggtaagatttaggagtacttcttagaagagatcgaacaccctaggagtattcatttcactttttacatttagaatactatgtactcctctattcccatctgctatcaataaagatatagacatactcaattataattgcatgttaaaaaatattatgtcttaacacagtatacaattatacaaattgtgactatgccacagaggaaatgagtgtatatctggttttttattagcttacgtgagttcctggagggcttgttttgatctctgcagatctggcaaataatgagaaagcaatccttctgccagttgctccactgctttgtcttctatagtcaagtcctctattaacccttcatctggagaagtgtcacttaaacctgtccccagcaaaaatcaaatttaggaaccttttatttattttatttttttaggctggtcaactgaagcagtgggattagagaaggaacaaagaaatctgtaactggttgtgatcaattagttgtaaacaccac",null,null,"+",4,null,"intron 1/exon2 and up of PLDN fused to intron 8 and down of AKAP13"]
["CH520-10F10","left of chr8:120938622 with left of chr8:141864641 ","GATCTGAGCAGACATTTTTTTCAATTCTTGGGTAAAATGATACGAAAATACCAGAGTAGGGCATCCCAGGAGTCTGGGCAGTGCTTTCGTTGGTGGTGGAAAGATTGGTTCATGTGACCTACTTCTTCACTAGCCTCTTTTACATTTGAATGCATAGGAATTCGGTGGAATGAAATCCTGAATGTGACAGTGGTTGCCTGATAAGAAGTTATTATTGAAGGGAATCAACCATTGTAGTTGCTCTATTAAATGGGAAACATTCCCTACAACTAGAAGCAGTGT@CA@tgtctttacatgcaatgggttcatggttttgtggacaagatggtttctaaaacacaatgacatttattttaggactatgcataagagagaaatgtacagtgcactatagagctctgaggaggaagagtccagatcttcttaaagtactcaggaaagctttctatgaggtactgacatatgaacccagacttgggtcaggtaagaactctttggttgtgaagaaaaatgggagagccagacaaatcccatgaagactctccatcttcattgacacttgggagtgtaacagttcatcagtacaggggagcaaactctctcaaattgctcatgacaggcaatagagcctagagggtaataatgacctgagttccgatcctagtgccatcattttcaagctgtgtgacactgaataagtttgtttacctttctgaatttaattcttcatatctgtgaaatggagagataataaataccttgcaaggccactgtggga",null,null,"+",2,null,"just before 5' end of DCC1 (first intron and up of BM046733, which is possibly continuation of DCC1) fused to intron 12 and down of PTK2"]
["CH520-19P3 1","right of chr20:32418125 with right of chr20:37031396","CCAGGCTTGGTGGCATGCACCTCTAATTCCAGCTACTTGGGAGGCAGCTACTTGGGAGGCTGAGGCACACGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCACATCACTGCACTCCAGCCTGCgTGGCCGAGCAAGACTCCATCTCAAAAATAGTAACAATAACAAACTTCAAGTTCTCTTCCAAATTACACCTGACATAGTTCTTTCTAATTTCTCAAAGATGCTAATGAACAATTCACTCTCATACTATACATAACATATATAACCTGGCAATATTATTCAGACTTGCTAATGGGTTCTTTTGACAGAAAAGGAGCCCTTTACCCAGATTAGCTCTAAAAAAAAATCCTCATCTAGAAATATGGCAACAATATTGCACTAGTAAAAAGCTAAATCCAATCCTTTGATCATCCCCACAACCTCTCTCCAAGGTCAGGCTTTGTCATTTCTCAACTAGACTTCTGCAATAGCTAGTCCCTCATCCTTTCGCTCATCACCAGAGCAATCTTTCTTTTTTTGTTTTTTGATACCTATCTTTGTCCTGCAGTACACAGCAATTTTCTAAAACACATATGTACTCACATCATTTCCCTGTCGAAAAATCTGCATCTATTTCTTTTTTTTTTCCTTCCTTTTGGTAAAGACGGGATATCACCATGTTGCCCAGGCTGGTCTCAAACTC@C@agtaagggtttctcTGAGCTCActgtgttctagaaagaggccatcattcccttcagtgctgagcataaagctaatgcagaca",null,"+",null,1,null,"Intron 1 and above of ITCH fused to intron 1 and above of DHX35"]
["CH520-19P3 2","left of chr20:32,444,387-32,445,132 fused to right of chr20:32,442,690-32,443,427",null,"N/A","N/A","N/A","N/A","N/A","Microrearrangment in intron 2 of ITCH"]

{"sheet":"Table S3","index":1,"n_rows":79,"n_cols":23,"rows_kept":79,"merged":[[0,2,0,5],[0,8,0,9],[0,12,0,14],[60,11,60,14],[62,11,62,14],[66,21,66,22],[67,11,67,13],[75,15,75,17],[77,15,77,17]],"flags":["formulas_cached_only"]}
["Clone name","Rearrangement","May04 coordinates of BPs",{"$nulls":3},"Sequence","Rel BP","Pos of repeat in seq",null,"Repeat","class/","      Repeat consensus",null,null,"Repeats at","Micro","Mech","DSBs",null,"CNP overlap",null,"Rearrangement "]
[null,"junction",{"$nulls":4},"Size"," pos","begin","end","name","family","begin","end","left"," BP junction","homology",{"$nulls":5},"type"]
["IGBR02_C17","chr1(+)-chr2(+)","chr1",182924472,"chr2",62363505,355,170,98,173,"PRIMA41","LTR/ERV",1,78,7678,"LTR/no",1,"NHEJ",2,{"$nulls":3},"translocation"]
["IGBR01_B10","chr7(+)-chr9(-)","chr7",139540838,"chr9",2897955,750,590,357,590,"(TA)n","Simple",1,247,0,"(TA)n/L1",0,"NHEJ",2,{"$nulls":3},"translocation"]
["IGBR11_N16","chr2(+)-chr1(+)","chr2",174154570,"chr1",18343129,400,224,1,252,"AluSx","SINE/Alu",-20,292,40,"AluSx/L3",8,"NHEJ",2,{"$nulls":3},"translocation"]
["2B421_009_F24","chr20(-)-chr21(-)","chr20",18308799,"chr21",44981595,1100,765,247,765,"L1PREC2","LINE/L1",5333,5853,307,"L1/no",1,"NHEJ",2,{"$nulls":3},"translocation"]
["2B421_011_K20","chr2(-)-chr3(+)","chr3",46706835,"chr2",163329998,293,45,{"$nulls":7},"no/no",4,"NHEJ",2,null,"cnp238",null,"translocation"]
["PM1_012_E06","chr3(+)-chr3(+)","chr3",115679584,"chr3",170746634,650,417,341,420,"AluSp/q","SINE/Alu",0,313,234,"AluSp/no",4,"NHEJ",2,{"$nulls":3},"Del55067050"]
["PM1_009_N12","chr5(+)-chr10(-)","chr5",142228976,"chr10",19621843,600,144,132,442,"AluY","SINE/Alu",-1,310,1,"AluSg/AluY",">200","NAHR",1,{"$nulls":3},"translocation"]
["PM1_010_C02","chr10(+)-chr11(+)","chr10",5753560,"chr11",44760712,450,211,150,218,"AluSc","SINE/Alu",18,86,223,"AluSc/L1M5","2 (7 ins)","NHEJ",2,null,"cnp820",null,"translocation"]
["PM1_010_C02",{"$nulls":7},219,450,"L1M5","LINE/L1",-584,5580,5348]
["PM1_005_P06","chr17(+)-chr20(+)","chr17",55656516,"chr20",8031998,891,443,132,442,"AluY","SINE/Alu",-1,310,1,"AluY/L1",7,"NHEJ",2,null,"cnp1317",null,"translocation"]
["PM1_011_D20","chr15(+)-chr6(+)","chr15",82534521,"chr6",136606360,320,143,1,144,"L1P1","LINE/L1",2527,2668,3478,"L1/AluJb",5,"NHEJ",2,null,"cnp1139",null,"translocation"]
["PM1_011_D20",{"$nulls":7},146,315,"AluJb","SINE/Alu",107,266,46]
["MCF7_1-90K7_1","chr1(+)-chr17(-)","chr1",107642839,"chr17",56206423,530,293,296,389,"L1MEc","LINE/L1",1053,1152,5248,"no/L1",4,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-90K7_2","chr17(-)-chr20(-)","chr17",56176517,"chr20",52065532,500,210,{"$nulls":7},"no/no",3,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-69F1","chr1(-)-chr17(-)","chr1",112077576,"chr17",54394999,3664,2532,2533,2604,"FLAM","SINE/Alu",59,131,12,"MIR/Alu",2,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_37_E22_1","chr1(+)-chr20(-)","chr1",114926238,"chr20",51902784,400,145,{"$nulls":7},"AluJo/MIR","0 (7 ins)","NHEJ",2,null,"cnp52",null,"translocation"]
["MCF7_37_E22_2","chr20(-)-chr3(-)","chr20",51897444,"chr3",62825720,450,245,{"$nulls":7},"no/no",3,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_37_E22_3","chr3(-)-chr3(-)","chr3",62818942,"chr3",63488828,526,417,{"$nulls":7},"no/no",3,"NHEJ",2,{"$nulls":3},"Del 669886"]
["MCF7_37_E22_4","chr3(-)-chr3(+)","chr3",63006824,"chr3",63471508,550,388,{"$nulls":7},"no/no",0,"NHEJ",2,{"$nulls":3},"Del 464684"]
["MCF7_1-23I6_1","chr20(-)-chr17(-)","chr20",45218879,"chr17",58433646,355,129,133,341,"L1ME2z","LINE/L1",6182,6396,48,"no/L1",0,"NHEJ",2,null,"cnp1336",null,"translocation"]
["MCF7_1-23I6_2","chr17(-)-chr20(+)","chr17",58432599,"chr20",61766679,675,459,118,449,"AluSx","SINE/Alu",1,312,0,"AluSx/no",2,"NHEJ",2,null,"cnp1344",null,"translocation"]
["MCF7_1-23I6_3","chr20(+)-chr20(-)","chr20",61767438,"chr20",48707010,454,345,{"$nulls":7},"no/L1",3,"NHEJ",2,null,"cnp1344",null,"inversion"]
["MCF7_1-23I6_4","chr20(-)-chr17(+)","chr20",48706688,"chr17",57562048,848,143,90,383,"AluSp","SINE/Alu",1,301,12,"AluSg/AluSp",">200","NAHR",1,{"$nulls":3},"translocation"]
["MCF7_1-23I6_5","chr17(+)-chr17(-)","chr17",57570676,"chr17",57563833,649,146,146,287,"AluSg1","SINE/Alu",-165,144,3,"no/AluSg",7,"NHEJ",2,{"$nulls":3},"inversion"]
["MCF7_1-23I6_6","chr17(-)-chr17(+)","chr17",57567780,"chr17",58392933,250,119,{"$nulls":7},"no/no",1,"NHEJ",2,{"$nulls":3},"inversion"]
["MCF7_1-23I6_7","chr17(+)-chr20(+)","chr17",58397035,"chr20",55108872,655,125,132,365,"MSTB","LTR/MaL",-187,239,1,"no/LTR",2,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-23I6_8","chr17(-)-chr20(+)","chr17",57449275,"chr20",53592674,325,100,{"$nulls":7},"no/no",4,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-6F10","chr3(-)-chr9(+)","chr3",61748214,"chr9",116673630,400,202,{"$nulls":7},"no/L1","0 (31ins)","NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-94M14_1","chr20(+)-chr20(-)","chr20",48863986,"chr20",58279243,776,112,105,237,"AluSg/x","SINE/Alu",169,305,7,"no/AluSx",3,"NHEJ",2,{"$nulls":3},"inversion"]
["MCF7_1-94M14_2","chr20(-)-chr17(+)","chr20",58278817,"chr17",56642484,782,543,{"$nulls":7},"no/no","0 (21 ins)","NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-21C24","chr17(-)-chr20(+)","chr20",45722583,"chr17",56961498,424,248,{"$nulls":7},"no/no",1,"NHEJ",2,null,"cnp1337",null,"translocation"]
["MCF7_1-110P1_2","chr17(+)-chr17(+)","chr17",57450644,"chr17",57543007,600,201,123,206,"AluS","SINE/Alu",2,85,227,"AluS/no",1,"NHEJ",2,{"$nulls":3},"Del 92363"]
["MCF7_1-110P1_3","chr17(-)-chr20(+)","chr17",57545690,"chr20",61759844,202,39,{"$nulls":7},"no/L1",2,"NHEJ",2,null,"cnp1344",null,"translocation"]
["MCF7_1-110P1_4","chr20(+)-chr20(+)","chr20",45221699,"chr20",61759178,600,365,7,365,"L1MC3","LINE/L1",7333,7707,78,"L1/LTR",0,"NHEJ",2,null,"cnp1336/cnp1344",null,"Del16537479"]
["MCF7_1-147K12_2","chr20(-)-chr17(+)","chr20",58278795,"chr17",56642484,688,556,{"$nulls":7},"no/no",4,"NHEJ",2,null,"RP5-1043L13","gain","translocation"]
["MCF7_1-7J14_1","chr17(+)-chr3(+)","chr17",56234249,"chr3",63679167,341,146,86,146,"AluS","SINE/Alu",21,81,231,"ALuS/no",3,"NHEJ",2,{"$nulls":3},"translocation"]
["MCF7_1-7J14_2","chr3(+)-chr3(+)","chr3",63716679,"chr3",63952774,400,178,{"$nulls":7},"L2/no",1,"NHEJ",2,{"$nulls":3},"Del 236095"]
["MCF7_1-30j11","chr16(+)-chr1(+)","chr16",69760074,"chr1",143591935,500,320,323,500,"LTR8","LTR/ERV",0,691,515,"LTR/LTR",3,"NHEJ",2,null,"cnp1191/cnp57",null,"translocation"]
["CH510-6A22","chr16(+)-chr8(+)","chr16",54892457,"chr8",71412946,350,181,183,339,"L1P3","LINE/L1",3204,3362,2784,"no/L1","0 (1 ins)","NHEJ",2,{"$nulls":3},"translocation"]
["CH510-7M17","chr22(+)-chr5(+)","chr22",30235279,"chr5",132726288,350,176,1,171,"L1MA8","LINE/L1",-263,6028,5858,"L1/no",1,"NHEJ",2,null,"RP11-247I13","gain","translocation"]
["CH510-8D12","chr20(-)-chr20(-)","chr20",43174145,"chr20",48124819,450,172,{"$nulls":7},"AluSx/no","0 (3 ins)","NHEJ",2,{"$nulls":3},"Del 4950674"]
["CH510-10K19","chr8(-)-chr5(-)","chr8",66867815,"chr5",42528209,400,168,{"$nulls":7},"no/no",1,"NHEJ",2,{"$nulls":3},"translocation"]
["CH518-1P6","chr17(+)-chr17(+)","chr17",35497080,"chr17",43725020,796,204,{"$nulls":7},"(CA)n/no",2,"NHEJ",2,{"$nulls":3},"Del 8227941"]
["CH518-4I7_1","chr17(-)-chr17(+)","chr17",55134872,"chr17",61929082,757,511,511,543,null,"SINE/Alu",-100,33,1,"no/AluSx",1,"NHEJ",2,{"$nulls":3},"inversion"]
["CH518-4I7_2","chr17(+)-chr17(-)","chr17",62018355,"chr17",56685246,786,648,{"$nulls":7},"no/AluSx","0 (2 ins)","NHEJ",2,{"$nulls":3},"inversion"]
["CH518-6N02_1","chr20(+)-chr17(+)","chr20",56425316,"chr17",35237100,3001,519,519,654,"AluJb","SINE/Alu",-39,273,138,"no/AluJb",1,"NHEJ",2,{"$nulls":3},"translocation"]
["CH518-6N02_2","chr17(+)-chr17(-)","chr17",35237235,"chr17",35198435,3001,649,519,654,"AluJb","SINE/Alu",-39,273,138,"AluJb/no",6,"NHEJ",2,{"$nulls":3},"inversion"]
["CH518-8K21_1","chr20(-)-chr20(+)","chr20",57661696,"chr20",50184121,763,152,32,149,null,"SINE/Alu",119,236,77,"AluSg/no",2,"NHEJ",2,{"$nulls":3},"inversion"]
["CH520-23A9_3","chr20(+)-chr20(+)","chr20",17262227,"chr20",40759081,795,699,{"$nulls":7},"no/no",1,"NHEJ",2,{"$nulls":3},"Del23496854"]
["CH520-17A7_2","chr20(+)-chr20(-)","chr20",35197110,"chr20",19278610,807,442,212,442,null,"SINE/Alu",23,267,44,"AluY/no",2,"NHEJ",2,{"$nulls":3},"inversion"]
["CH520-2B1_1","chr5(+)-chr8(-)","chr5",158225297,"chr8",108959305,762,634,{"$nulls":7},"no/no",4,"NHEJ",2,{"$nulls":3},"translocation"]
["CH520-2B1_3","chr8(-)-chr8(+)","chr8",133374023,"chr8",108948230,755,357,{"$nulls":7},"no/MER",1,"NHEJ",2,{"$nulls":3},"inversion"]
["CH520-12I13_4","chr15(-)-chr15(-)","chr15",83941823,"chr15",43672172,756,74,{"$nulls":7},"no/no",4,"NHEJ",2,{"$nulls":3},"Del40269651"]
["CH520-10F10","chr8(+)-chr8(+)","chr8",120938622,"chr8",141864641,777,284,{"$nulls":7},"no/no",2,"NHEJ",2,{"$nulls":3},"Del20926019"]
["CH520-19P3 1","chr20(-)-chr20(-)","chr20",32418117,"chr20",37031314,780,720,{"$nulls":7},"Alu/no",1,"NHEJ",2,{"$nulls":3},"Del 4613197"]
["redundant BPs:"]
["MCF7_1-110P1_1","chr20(-)-chr17(+)","chr20",53592674,"chr17",57449275,266,169,{"$nulls":3},"same BP as MCF7_1-23I6_8",{"$nulls":3},"no/no",4,"NHEJ",2]
["MCF7_1-110P1_5","chr17(+)-chr20(+)","chr17",58433646,"chr20",45218879,250,113,1,110,"L1ME2z","same BP as MCF7_1-23I6_1",{"$nulls":3},"L1/no",0,"NHEJ",2]
["MCF7_1-110P1_6","chr17(-)-chr20(+)","chr17",58432599,"chr20",61766679,579,433,92,423,"AluSx","same  BP as MCF7_1-23I6_2",{"$nulls":3},"AluSx/no",2,"NHEJ",2]
["MCF7_1-110P1_7","chr20(+)-chr20(-)","chr20",48707010,"chr20",61767438,350,177,{"$nulls":3},"same BP as MCF7_1-23I6_3    ",{"$nulls":3},"L1/no",3,"NHEJ",2]
["MCF7_1-110P1_8","chr20(-)-chr17(+)","chr20",48706688,"chr17",57562048,550,265,212,505,"AluSp","same  BP as MCF7_1-23I6_4",{"$nulls":3},"AluSg/AluSp",">200","NAHR",1]
["MCF7_1-110P1_9","chr17(+)-chr17(-)","chr17",57563833,"chr17",57570676,500,205,71,212,"AluSg1","same BP as MCF7_1-23I6_5",{"$nulls":3},"AluSg1/no",7,"NHEJ",2]
["MCF7_1-110P1_10","chr17(-)-chr17(+)","chr17",57567780,"chr17",58392933,625,443,{"$nulls":3},"same BP as MCF7_1-23I6_6",{"$nulls":3},"no/no",1,"NHEJ",2]
["MCF7_1-110P1_11","chr17(+)-chr20(+)","chr17",58397035,"chr20",55108872,700,239,246,481,"MSTB","same BP as MCF7_1-23I6_7",{"$nulls":3},"no/LTR",2,"NHEJ",2]
["MCF7_1-147K12_1","chr20(+)-chr20(-)","chr20",48863986,"chr20",58279243,688,110,103,235,"AluSg/x","same BP as MCF7_1-94M14_1",{"$nulls":3},"no/AluSx",3,"NHEJ",2]
["2B421_023_O08","chr1(-)-chr16(-)","chr16",69760074,"chr1",143591935,400,188,191,385,"LTR8","same BP as MCF7_1-30j11",{"$nulls":3},"LTR/LTR",3,"NHEJ",2]
[]
[{"$nulls":11},"not including redundant BPs",{"$nulls":3},"Total DSBnumber",null,null,104]
[{"$nulls":15},"DSB at Alu",null,22]
[{"$nulls":15},"DSBs at repeats",null,56]
[]
[{"$nulls":17},"98% of DSBs repaired by NHEJ"]
[{"$nulls":15},"(96% of rearrangements)"]
[{"$nulls":15}," "]
[{"$nulls":15},"2% of DSBs repaired"]
[{"$nulls":15},"by ALU- mediated NAHR"]
[{"$nulls":15},"(4% of rearrangements)"]

{"sheet":"Table S4","index":2,"n_rows":78,"n_cols":15,"rows_kept":78,"merged":[[2,0,2,1],[3,0,3,1],[9,0,11,0],[19,0,22,0],[27,0,28,0],[34,0,37,0],[43,0,57,0],[62,0,63,0],[66,0,66,6],[67,0,77,0]],"flags":["formulas_cached_only"]}
["PCR results for MCF7 clusters"]
[]
["Red=Positive PCR assay"]
["Blue=Negative PCR assay"]
[]
[]
["BAC Clone: MCF7_1_110_P1"]
["Primers",{"$nulls":10},"BES Coordinates"]
[null,"A11","B05","B10","F12(#1)","F12(#2)","H01","HO2","H02(#2)","HO5","#4=HO5"]
["Templates","151E21","151E21","151E21","151E21","151E21","151E21","151E21","151E21","151E21","151E21","chr20",{"v":53592673,"d":"53,592,673"},"chr20",{"v":55212170,"d":"55,212,170"}]
[null,"102M10","102M10","102M10","102M10","102M10","102M10","102M10","102M10","102M10","102M10","chr20",{"v":53592755,"d":"53,592,755"},"chr20",{"v":55212215,"d":"55,212,215"}]
[null,"110P1","110P1","110P1","110P1","110P1","110P1","110P1","110P1","110P1","110P1","chr20",{"v":53592673,"d":"53,592,673"},"chr20",{"v":55224352,"d":"55,224,352"}]
[]
[]
[]
[]
["BAC Clone: MCF7_1_37_E22"]
["Primers",{"$nulls":6},"BES Coordinates"]
[null,"D11(#2)","C02","B02","D04","H12","D09"]
["Templates","34J23","34J23","34J23","34J23","34J23","34J23","chr1",{"v":114855141,"d":"114,855,141"},"chr3",{"v":63069706,"d":"63,069,706"}]
[null,"21C19","21C19","21C19","21C19","21C19","21C19","chr1",{"v":114855752,"d":"114,855,752"},"chr3",{"v":63013150,"d":"63,013,150"}]
[null,"30J14","30J14","30J14","30J14","30J14","30J14","chr1",{"v":114914928,"d":"114,914,928"},"chr3",{"v":63109907,"d":"63,109,907"}]
[null,"37E22","37E22","37E22","37E22","37E22","37E22","chr1",{"v":114855963,"d":"114,855,963"},"chr3",{"v":63024571,"d":"63,024,571"}]
[]
[]
["BAC Clone: MCF7_1_35_E03"]
[null,"Primer:#20(35_E03FR)",null,null,"BES Coordinates"]
["Templates","11F20",null,null,"chr1",{"v":106466101,"d":"106,466,101"},"chr3",{"v":63850195,"d":"63,850,195"}]
[null,"35E03",null,null,"chr1",{"v":106493068,"d":"106,493,068"},"chr3",{"v":63819205,"d":"63,819,205"}]
[]
[]
["BAC Clone: MCF7_1_23_I6"]
["Primer",{"$nulls":3},"BES Coordinates"]
[null,"H03(#1)","HO3(#2)","G11"]
["Templates","98H2","98H2","98H2","chr20",{"v":45219144,"d":"45,219,144"},"chr20",{"v":55181479,"d":"55,181,479"}]
[null,"78P21","78P21","78P21","chr20",{"v":45219212,"d":"45,219,212"},"chr20",{"v":55230636,"d":"55,230,636"}]
[null,"157I22","157I22","157I22","chr20",{"v":45219222,"d":"45,219,222"},"chr20",{"v":55230723,"d":"55,230,723"}]
[null,"23I6","23I6","23I6","chr20",{"v":45204511,"d":"45,204,511"},"chr20",{"v":55229186,"d":"55,229,186"}]
[]
[]
[]
["BAC Clone: MCF7_1_94_M14"]
["PRIMER:F01","MCF7_1_94_M14",null,"chr17",{"v":56664853,"d":"56,664,853"},"chr20",{"v":48767874,"d":"48,767,874"}]
["Templates","89F5",null,"chr17",{"v":56672668,"d":"56,672,668"},"chr20",{"v":48793046,"d":"48,793,046"}]
[null,"148L5",null,"chr17",{"v":56683333,"d":"56,683,333"},"chr20",{"v":48800552,"d":"48,800,552"}]
[null,"138H21",null,"chr17",{"v":56683557,"d":"56,683,557"},"chr20",{"v":48766662,"d":"48,766,662"}]
[null,450000000000000,null,"chr17",{"v":56683557,"d":"56,683,557"},"chr20",{"v":48800306,"d":"48,800,306"}]
[null,"159O13",null,"chr17",{"v":56690549,"d":"56,690,549"},"chr20",{"v":48780707,"d":"48,780,707"}]
[null,"160H16",null,"chr17",{"v":56692153,"d":"56,692,153"},"chr20",{"v":48780710,"d":"48,780,710"}]
[null,"58D14",null,"chr17",{"v":56694774,"d":"56,694,774"},"chr20",{"v":48799475,"d":"48,799,475"}]
[null,"54C3",null,"chr17",{"v":56716412,"d":"56,716,412"},"chr20",{"v":48838877,"d":"48,838,877"}]
[null,"77L13",null,"chr17",{"v":56721641,"d":"56,721,641"},"chr20",{"v":48814094,"d":"48,814,094"}]
[null,"5I19",null,"chr17",{"v":56735635,"d":"56,735,635"},"chr20",{"v":48849381,"d":"48,849,381"}]
[null,"124A6",null,"chr17",{"v":56735855,"d":"56,735,855"},"chr20",{"v":48800552,"d":"48,800,552"}]
[null,"145N9",null,"chr17",{"v":56738006,"d":"56,738,006"},"chr20",{"v":48817122,"d":"48,817,122"}]
[null,"89I18",null,"chr17",{"v":56738182,"d":"56,738,182"},"chr20",{"v":48834230,"d":"48,834,230"}]
[null,"159F18",null,"chr17",{"v":56768118,"d":"56,768,118"},"chr20",{"v":48858768,"d":"48,858,768"}]
[null,"49J15",null,"chr17",{"v":56793835,"d":"56,793,835"},"chr20",{"v":48860179,"d":"48,860,179"}]
[]
[]
["BAC Clone: MCF7_1_21_C24"]
["Primer: E11","MCF7_1_21_C24",null,"BES Coordinates"]
["Templates","40O01",null,"chr17",{"v":57104267,"d":"57,104,267"},"chr20",{"v":45760578,"d":"45,760,578"}]
[null,"21C24",null,"chr17",{"v":57036235,"d":"57,036,235"},"chr20",{"v":45756525,"d":"45,756,525"}]
[]
[]
["BAC Clone: MCF7_1_69_F1 (Primer:F12)",{"$nulls":6},"BES Coordinates"]
["Template","41G20",null,"chr1",{"v":112102833,"d":"112,102,833"},"chr17",{"v":54473852,"d":"54,473,852"}]
[null,"80G18",null,"chr1",{"v":112102983,"d":"112,102,983"},"chr17",{"v":54495012,"d":"54,495,012"}]
[null,"91L21",null,"chr1",{"v":112113695,"d":"112,113,695"},"chr17",{"v":54498004,"d":"54,498,004"}]
[null,"39B19",null,"chr1",{"v":112113942,"d":"112,113,942"},"chr17",{"v":54474551,"d":"54,474,551"}]
[null,"86B4",null,"chr1",{"v":112114983,"d":"112,114,983"},"chr17",{"v":54473823,"d":"54,473,823"}]
[null,"62P11",null,"chr1",{"v":112128034,"d":"112,128,034"},"chr17",{"v":54473799,"d":"54,473,799"}]
[null,"43K5",null,"chr1",{"v":112133537,"d":"112,133,537"},"chr17",{"v":54473892,"d":"54,473,892"}]
[null,"86C2",null,"chr1",{"v":112139319,"d":"112,139,319"},"chr17",{"v":54436248,"d":"54,436,248"}]
[null,"168M9",null,"chr1",{"v":112139386,"d":"112,139,386"},"chr17",{"v":54477235,"d":"54,477,235"}]
[null,"35A16",null,"chr1",{"v":112207335,"d":"112,207,335"},"chr17",{"v":54416791,"d":"54,416,791"}]
[null,"69F1",null,"chr1",{"v":112079475,"d":"112,079,475"},"chr17",{"v":54526308,"d":"54,526,308"}]

{"sheet":"Table S5","index":3,"n_rows":23,"n_cols":2,"rows_kept":23,"flags":["formulas_cached_only"]}
["Recurrent cluster","Structural Variant"]
["(( (1, 161331265, +), (1, 161577005, -) ): 2B421_021_M21,\n ( (1, 162319317, +), (1, 162366908, -) ): CHORI518_007_N10)","((1, 162149184, 162157194, CopyNumber))"]
["(( (1, 199047961, +), (1, 199053338, -) ): CHORI514_8_A06, \n( (1, 199284799, +), (1, 199516914, -) ): 2B421_020_P11)","((1, 199299046, 199455863, CopyNumber))"]
["(( (2, 83212414, +), (2, 83214451, -) ): 2B421_012_J14, \n( (2, 83607900, +), (2, 83682367, -) ): MCF7_1-27h18)","((2, 83162231, 83803064, CopyNumber), \n(2, 83160508, 83876420, CopyNumber))"]
["(( (2, 122828297, +), (2, 122875480, -) ): 2B421_013_M05,\n ( (2, 123240261, +), (2, 123310868, -) ): CHORI_510R3_6_D03)","((2, 123197054, 123198531, CopyNumber))"]
["(( (2, 215820905, +), (2, 215847527, -) ): IGBR12_G13, \n( (2, 216469765, +), (2, 216715986, -) ): 2B421_005_I02)","((2, 216138444, 216256321, CopyNumber), \n(2, 216116776, 216276027, CopyNumber))"]
["(( (3, 116721046, +), (3, 116963457, -) ): CHORI_510R3_15_K17,\n ( (3, 117693745, +), (3, 117694830, -) ): CHORI514_5_L09)","((3, 117585789, 117591189, CopyNumber),\n (3, 117568368, 117604638, CopyNumber), \n(3, 117624820, 117790232, CopyNumber))"]
["(( (3, 163365054, +), (3, 163384865, -) ): CHORI520_R1_20_I04, \n( (3, 163965308, +), (3, 164199665, -) ): PM1_016_G04)","((3, 163991649, 164115393, CopyNumber), \n(3, 164021978, 164088045, CopyNumber),\n(3, 163612695, 163624587, CopyNumber),\n (3, 163700696, 163712286, CopyNumber), \n(3, 163995385, 164105358, CopyNumber), \n(3, 163666164, 163709523, CopyNumber),\n (3, 163953751, 164225496, CopyNumber))"]
["(( (3, 193356185, +), (3, 193426165, -) ): 2B421_003_H02, \n( (3, 194256533, +), (3, 194293542, -) ): CHORI518_015_H14)","((3, 193414727, 193431907, CopyNumber), \n(3, 194082038, 194092418, CopyNumber), \n(3, 193832606, 193983255, CopyNumber), \n(3, 193570453, 193577446, CopyNumber), \n(3, 194279079, 194450436, CopyNumber))"]
["(( (4, 91839243, +), (4, 92130083, -) ): MCF7_1-1O8, \n( (4, 92279226, +), (4, 92350021, -) ): CHORI_510R3_13_B07)","((4, 91975575, 92125825, CopyNumber), \n(4, 92290742, 92291877, CopyNumber), \n(4, 92290742, 92291877, CopyNumber), \n(4, 92290742, 92291877, CopyNumber), \n(4, 92303842, 92503292, CopyNumber))"]
["(( (7, 53909596, +), (7, 54138388, +) ): CHORI518_003_B22, \n( (7, 54015853, +), (7, 54109507, +) ): 2B421_007_C04)","((7, 54054113, 54130871, Inversion), \n(7, 54100011, 54166468, Inversion))"]
["(( (8, 2200073, -), (8, 2471269, -) ): CHORI_510R3_13_M22,\n ( (8, 2286821, -), (8, 2370797, -) ): CHORI518_002_N03)","((8, 2270843, 2278367, Inversion))"]
["(( (11, 106639777, +), (11, 106670297, -) ): MCF7_35_D21,\n ( (11, 106713972, +), (11, 106918594, -) ): PM1_009_N16)","((11, 106724834, 106756990, CopyNumber), \n(11, 106829486, 106849778, CopyNumber))"]
["(( (11, 123844912, +), (11, 123893306, -) ): 2B421_015_C20, \n( (11, 124345738, +), (11, 124584739, -) ): CHORI514_17_L07)","((11, 124580498, 124605648, CopyNumber))"]
["(( (12, 9435970, +), (12, 9697257, -) ): CHORI_510R3_15_L15, \n( (12, 9509760, +), (12, 9728776, -) ): MCF7_1-21J16)","((12, 9474722, 9702031, CopyNumber), \n(12, 9262862, 9814796, CopyNumber))"]
["(( (12, 17695796, +), (12, 17885545, +) ): CHORI_510R3_15_G08, \n( (12, 17732115, +), (12, 17892496, +) ): MCF7_36_O02,\n ( (12, 17739886, +), (12, 17834229, +) ): 2B421_026_L09)","((12, 17801435, 17883572, Inversion))"]
["(( (12, 17846632, -), (12, 17999803, -) ): CHORI_510R3_6_M03,\n ( (12, 17873418, -), (12, 17983463, -) ): CHORI520_R1_8_P02)","((12, 17801435, 17883572, Inversion))"]
["(( (16, 14604536, +), (16, 14673704, -) ): PM1_004_C08, \n( (16, 15018244, +), (16, 15423157, -) ): 2B421_017_H05)","((16, 15006975, 15010118, CopyNumber), \n(16, 14529556, 15274051, CopyNumber))"]
["(( (17, 38141193, +), (17, 38376842, -) ): 2B421_016_I01,\n ( (17, 38482383, +), (17, 38748037, -) ): CHORI520_R1_20_D11, \n( (17, 38734212, +), (17, 38769690, -) ): 2B421_001_H08)","((17, 38235012, 38412429, CopyNumber))"]
["(( (17, 53838744, +), (17, 56182504, -) ): CHORI518_021_O23, \n( (17, 54420862, +), (17, 55271743, -) ): MCF7_1-151N7, \n( (17, 54424526, +), (17, 55279688, -) ): MCF7_1-13G5, \n( (17, 54447887, +), (17, 55269584, -) ): MCF7_1-52j15)","((17, 55328116, 55513938, CopyNumber), \n(17, 53997375, 54149948, CopyNumber), \n(17, 54437361, 54780416, CopyNumber), \n(17, 55350429, 55513944, CopyNumber))"]
["(( (19, 41397593, +), (19, 41416565, -) ): MCF7_40_C13, \n( (19, 41633189, +), (19, 41838850, -) ): PM1_010_O09)","((19, 41523559, 41557255, CopyNumber))"]
["(( (19, 53069880, +), (19, 53114211, -) ): 2B421_010_H06,\n ( (19, 53071155, +), (19, 53113164, -) ): IGBR013_H15)","((19, 53086420, 53143430, CopyNumber))"]
["(( (20, 14323850, +), (20, 14654027, -) ): CHORI520_R1_16_O18,\n ( (20, 15197833, +), (20, 15250768, -) ): CHORI518_001_G14, \n( (20, 15197842, +), (20, 15250709, -) ): CHORI518_001_G13)","((20, 14700001, 14897555, CopyNumber), \n(20, 14742361, 14771472, CopyNumber), \n(20, 14742361, 14771472, CopyNumber), \n(20, 14653888, 14792049, CopyNumber), \n(20, 14825886, 14863051, CopyNumber), \n(20, 15230448, 15279007, CopyNumber), \n(20, 14679344, 14803457, CopyNumber))"]

{"sheet":"Table S7","index":4,"n_rows":89,"n_cols":102,"rows_kept":89,"flags":["formulas_cached_only"]}
["Location","Orientation","Clones","Location","Orientation","Clones","Location ","Orientation","Clones","Location ","Orientation","Clones","Location ","Orientation","Clones"]
["(1, 162642587, 162906065)","-","(MCF7_1-13H13)","(1, 162103430, 162366908)","-","(CHORI518_007_N10)"]
["(1, 164957193, 165220671)","-","(MCF7_40_A17)","(1, 164235795, 164499273)","-","(CHORI518_002_P23)"]
["(1, 165204405, 165467883)","+","(MCF7_40_A17)","(1, 165115791, 165276668)","+","(CHORI518_015_L02, CHORI518_014_E04)"]
["(1, 234078140, 234341618)","-","(MCF7_1-2F19)","(1, 234749200, 234932479)","-","(CHORI518_006_D16, CHORI518_020_F22)"]
["(2, 8995866, 9259344)","-","(CHORI518_005_M20)","(2, 8993999, 9257477)","-","(CHORI520_R1_26_H12)"]
["(2, 27096154, 27359632)","+","(CHORI518_020_F17)","(2, 27322666, 27586144)","+","(CHORI520_R1_21_J06)"]
["(2, 32298250, 32561728)","+","(MCF7_1-16G3)","(2, 33053199, 33316677)","+","(CHORI520_R1_24_C01)"]
["(2, 67841743, 68105221)","+","(MCF7_1-28i22)","(2, 68135427, 68398712)","+","(CHORI518_022_B15, CHORI518_022_A16)"]
["(2, 221321851, 221585329)","+","(MCF7_1-28i16)","(2, 220966827, 221230305)","+","(CHORI520_R1_25_D10)"]
["(3, 33666877, 33930355)","-","(MCF7_1-15O10)","(3, 32838823, 33102301)","-","(CHORI518_015_B06)"]
["(3, 143776147, 144039625)","+","(MCF7_37_N17)","(3, 143551318, 143814796)","+","(CHORI520_R1_2_C14)"]
["(3, 162869658, 163133136)","+","(MCF7_1-28h18)","(3, 163365054, 163628532)","+","(CHORI520_R1_20_I04)"]
["(4, 110525614, 110789092)","+","(MCF7_1-1H7)","(4, 111344550, 111608028)","+","(CHORI518_002_H23)"]
["(4, 171604450, 171867928)","+","(MCF7_1-8H6)","(4, 171002967, 171266445)","+","(CHORI520_R1_14_P01)"]
["(4, 179789252, 180052730)","-","(MCF7_1-14J9)","(4, 180202939, 180466417)","-","(CHORI518_007_B03)"]
["(4, 179976716, 180240194)","+","(MCF7_1-14J9)","(4, 179761334, 180024812)","+","(CHORI518_010_M18)"]
["(5, 20434697, 20698175)","-","(MCF7_1-5F9)","(5, 19663383, 19926861)","-","(CHORI518_021_I21)"]
["(6, 57521393, 57784871)","+","(MCF7_1-20P4)","(6, 58132049, 58395527)","+","(CHORI518_018_D17)"]
["(6, 61939420, 62202898)","+","(MCF7_1-31g03)","(6, 62058599, 62322077)","+","(CHORI518_018_D17)"]
["(6, 119919416, 120182894)","-","(MCF7_1-87P24)","(6, 120572507, 120835985)","-","(CHORI518_006_I08)"]
["(7, 68697812, 68961290)","-","(MCF7_1-33c18)","(7, 68223304, 68486782)","-","(CHORI518_015_D15)"]
["(7, 72472642, 72736120)","+","(MCF7_1-16P7)","(7, 72037905, 72301383)","+","(CHORI520_R1_17_H12)"]
["(8, 43951437, 44214915)","+","(MCF7_1-18I23)","(8, 43751000, 44014478)","+","(CHORI520_R1_14_K04)"]
["(8, 71188813, 71452291)","-","(CHORI518_021_B08)","(8, 71257552, 71436567)","-","(CHORI520_R1_19_K14, CHORI520_R1_3_I04, CHORI520_R1_19_H21)"]
["(8, 100944298, 101071807)","-","(MCF7_1-15I7, MCF7_1-21H22)","(8, 100311761, 100575239)","-","(CHORI520_R1_2_I20)"]
["(8, 110305883, 110569361)","-","(MCF7_1-3I20)","(8, 109729871, 109993349)","-","(CHORI520_R1_6_K01)"]
["(9, 130871275, 131134753)","-","(MCF7_1-1O1)","(9, 130575403, 130838881)","-","(CHORI518_026_P10)"]
["(10, 108299537, 108563015)","-","(MCF7_1-30k02)","(10, 107524995, 107788473)","-","(CHORI518_025_M09)"]
["(11, 99109570, 99373048)","-","(MCF7_1-28c07)","(11, 98835726, 99099204)","-","(CHORI518_021_G24)"]
["(13, 19612950, 19876428)","+","(MCF7_1-1K4)","(13, 19837056, 20100534)","+","(CHORI520_R1_17_O23)"]
["(13, 78556704, 78820182)","+","(MCF7_36_F03)","(13, 78390619, 78654097)","+","(CHORI520_R1_6_P07)"]
["(15, 84189072, 84452550)","-","(MCF7_1-47a20)","(15, 83691733, 83955211)","-","(CHORI520_R1_12_I13)"]
["(16, 45550423, 45813901)","+","(MCF7_1-32j06)","(16, 44943338, 45206816)","+","(CHORI520_R1_1_E10)"]
["(17, 36266976, 36530454)","+","(MCF7_1-13B6)","(17, 36777979, 36867672)","+","(CHORI520_R1_16_C10, CHORI520_R1_25_K12)"]
["(17, 62614732, 62878210)","+","(MCF7_1-46c01)","(17, 61976225, 62239703)","+","(CHORI518_019_H21)"]
["(17, 75563921, 75827399)","+","(MCF7_1-28j21)","(17, 75735280, 75903596)","+","(CHORI520_R1_19_E16, CHORI520_R1_23_K03)"]
["(20, 13086203, 13349681)","+","(MCF7_1-20H10)","(20, 13292972, 13556450)","+","(CHORI520_R1_23_A09)"]
["(20, 14987299, 15250709)","-","(CHORI518_001_G14, CHORI518_001_G13)","(20, 14390549, 14654027)","-","(CHORI520_R1_16_O18)"]
["(23, 7443192, 7504433)","+","(CHORI518_013_L11, CHORI518_011_D10)","(23, 7075231, 7338709)","+","(CHORI520_R1_10_O15)"]
["(23, 23696825, 23960303)","-","(MCF7_1-8E1)","(23, 23039453, 23302931)","-","(CHORI518_010_E11)"]
["(23, 101576702, 101840180)","-","(MCF7_1-2L1)","(23, 101901131, 102164609)","-","(CHORI520_R1_2_O18)"]
["(1, 142577965, 142841443)","+","(MCF7_36_N21)","(1, 142556497, 142819975)","+","(CHORI518_009_N01)","(1, 142464713, 142728191)","+","(CHORI520_R1_20_D21)"]
["(1, 142939085, 143202563)","-","(MCF7_1-17D24)","(1, 141843600, 142107078)","-","(CHORI520_R1_18_J23)","(1, 142299121, 142562599)","-","(CHORI520_R1_18_J23)"]
["(1, 235634116, 235897594)","+","(MCF7_1-53f16)","(1, 234910988, 235174466)","+","(CHORI518_007_D22)","(1, 235014813, 235278291)","+","(CHORI518_016_A23)"]
["(2, 10055825, 10319303)","+","(MCF7_1-22I24)","(2, 9003255, 9266733)","+","(CHORI518_005_M20)","(2, 9247607, 9511085)","+","(CHORI520_R1_26_H12)"]
["(4, 55498195, 55761673)","-","(MCF7_1-11A17)","(4, 56184138, 56447616)","-","(CHORI520_R1_17_M24)","(4, 56218713, 56482191)","-","(CHORI520_R1_17_M24)"]
["(4, 79519654, 79783132)","-","(MCF7_1-7N12)","(4, 78726662, 78990140)","-","(CHORI518_007_J15)","(4, 79933862, 80197340)","-","(CHORI520_R1_23_D14)"]
["(7, 68540829, 68804307)","+","(MCF7_1-33c18)","(7, 69151282, 69414760)","+","(CHORI518_008_A10)","(7, 69151333, 69414811)","+","(CHORI518_008_A10)"]
["(8, 71905065, 72168543)","+","(CHORI518_004_H20)","(8, 71470838, 71734316)","+","(CHORI520_R1_8_N12)","(8, 72217886, 72221854)","+","(CHORI520_R1_21_N21, CHORI520_R1_20_G09, CHORI520_R1_4_L24, CHORI520_R1_2_A17, CHORI520_R1_21_J21)"]
["(8, 81717174, 81980652)","+","(CHORI518_021_B08)","(8, 81820173, 82083651)","+","(CHORI520_R1_18_O09)","(8, 81868788, 82132266)","+","(CHORI520_R1_15_A07)"]
["(8, 100939784, 101203262)","+","(MCF7_35_I10)","(8, 101180833, 101308342)","+","(MCF7_1-15I7, MCF7_1-21H22)","(8, 100564801, 100828279)","+","(CHORI520_R1_2_I20)"]
["(10, 46542861, 46806339)","+","(MCF7_1-18M2)","(10, 47162449, 47425927)","+","(MCF7_1-18M2)","(10, 47556101, 47786654)","+","(CHORI518_007_F02, CHORI518_013_M19)"]
["(11, 50876737, 51140215)","-","(MCF7_1-30c02)","(11, 50825150, 51088628)","-","(CHORI518_007_N06)","(11, 50888201, 51151679)","-","(CHORI520_R1_26_K13)"]
["(12, 78768028, 79031506)","-","(CHORI518_015_D09)","(12, 79091266, 79354744)","-","(CHORI520_R1_4_A14)","(12, 79282783, 79546261)","-","(CHORI520_R1_4_A14)"]
["(13, 18805297, 19068775)","-","(MCF7_1-17K14)","(13, 19576241, 19839719)","-","(MCF7_1-1K4)","(13, 19587109, 19850587)","-","(CHORI520_R1_17_O23)"]
["(14, 84463868, 84727346)","-","(MCF7_1-47j15)","(14, 84572092, 84835570)","-","(MCF7_1-47j15)","(14, 84358219, 84609766)","-","(CHORI520_R1_4_F05, CHORI520_R1_4_J03)"]
["(14, 85971232, 86234710)","-","(MCF7_1-17L4)","(14, 85470183, 85733661)","-","(MCF7_1-16P22)","(14, 85571650, 85835128)","-","(CHORI518_015_D15)"]
["(17, 34810460, 34924340)","-","(CHORI518_005_P07, CHORI518_019_L24)","(17, 35065192, 35179072)","-","(CHORI518_005_P07, CHORI518_019_L24)","(17, 34407230, 34571221)","-","(CHORI520_R1_16_N01, CHORI520_R1_16_G03)"]
["(17, 59765307, 60028785)","+","(MCF7_1-29e16)","(17, 60040809, 60304287)","+","(MCF7_1-30d08)","(17, 60680845, 60944323)","+","(CHORI518_024_I10)"]
["(20, 11363584, 11627062)","-","(MCF7_1-5O10)","(20, 11300740, 11564218)","-","(CHORI520_R1_22_I15)","(20, 11992523, 12256001)","-","(CHORI520_R1_14_N07)"]
["(20, 58015378, 58278856)","-","(MCF7_1-138O15)","(20, 57510229, 57685724)","-","(CHORI518_009_F23, CHORI518_007_P17)","(20, 57493654, 57720298)","-","(CHORI518_008_K21, CHORI518_011_C10)"]
["(3, 193164716, 193428194)","+","(MCF7_1-1C13)","(3, 194256533, 194520011)","+","(CHORI518_015_H14)","(3, 193033615, 193174480)","+","(CHORI520_R1_23_D04, CHORI520_R1_25_M01)","(3, 193684145, 193825010)","+","(CHORI520_R1_23_D04, CHORI520_R1_25_M01)"]
["(4, 79245988, 79509466)","+","(MCF7_1-6P13)","(4, 79706298, 79969776)","+","(MCF7_1-7N12)","(4, 80180506, 80443984)","+","(CHORI520_R1_23_D14)","(4, 80782625, 81046103)","+","(CHORI520_R1_22_I15)"]
["(6, 1312361, 1575839)","-","(MCF7_1-10L13)","(6, 1233840, 1497318)","-","(CHORI520_R1_2_J05)","(6, 1659326, 1922804)","-","(CHORI520_R1_2_J05)","(6, 1529645, 1793123)","-","(CHORI520_R1_2_J02)"]
["(8, 76492949, 76756427)","-","(MCF7_1-34c24)","(8, 75213446, 75199383)","-","(CHORI520_R1_9_B12, CHORI520_R1_1_L17, CHORI520_R1_12_J02)","(8, 75483390, 75746868)","-","(CHORI520_R1_20_L04)","(8, 76160865, 76219193)","-","(CHORI520_R1_23_P22, CHORI520_R1_14_H02, CHORI520_R1_24_I03)"]
["(8, 81927885, 82191363)","-","(CHORI518_004_H20)","(8, 81141514, 81404992)","-","(CHORI520_R1_5_C24)","(8, 81197480, 81460958)","-","(CHORI520_R1_9_L07)","(8, 81409954, 81673432)","-","(CHORI520_R1_9_D19)"]
["(8, 116794028, 117057506)","-","(MCF7_1-20L14)","(8, 117049883, 117313361)","-","(CHORI520_R1_3_E17)","(8, 116680157, 116770153)","-","(CHORI520_R1_12_B18, CHORI520_R1_3_G03, CHORI520_R1_21_C09, CHORI520_R1_6_O04, CHORI520_R1_5_N18, CHORI520_R1_21_H14)","(8, 116856090, 117119568)","-","(CHORI520_R1_1_D20)"]
["(11, 54208424, 54471902)","-","(MCF7_1-30c02)","(11, 54312449, 54575927)","-","(CHORI518_007_N06)","(11, 55147362, 55257381)","-","(CHORI518_025_O15, CHORI518_019_F23)","(11, 54239585, 54503063)","-","(CHORI520_R1_26_K13)"]
["(16, 45350910, 45614388)","-","(MCF7_1-32j06)","(16, 44719554, 44983032)","-","(CHORI518_006_J07)","(16, 44825543, 45089021)","-","(CHORI518_006_J07)","(16, 44706047, 44969525)","-","(CHORI520_R1_1_E10)"]
["(17, 33638363, 33901841)","+","(MCF7_1-3G2)","(17, 32847373, 33110851)","+","(CHORI518_012_N10)","(17, 33237259, 33500737)","+","(CHORI518_010_L16)","(17, 33428534, 33692012)","+","(CHORI518_010_L16)"]
["(1, 120322355, 120585833)","+","(MCF7_36_N21)","(1, 120536467, 120799945)","+","(MCF7_36_P16)","(1, 120245534, 120509012)","+","(CHORI518_009_N01)","(1, 120303716, 120567194)","+","(CHORI520_R1_20_D21)","(1, 120553690, 120817168)","+","(CHORI520_R1_17_P11)"]
["(7, 61835551, 62099029)","+","(CHORI518_024_C14)","(7, 62190968, 62454446)","+","(CHORI518_001_A09)","(7, 62213585, 62477063)","+","(CHORI518_001_A09)","(7, 61071022, 61334500)","+","(CHORI520_R1_1_B14)","(7, 61348847, 61612325)","+","(CHORI520_R1_1_B14)"]
["(8, 127958522, 128222000)","-","(MCF7_39_B05)","(8, 128040216, 128303694)","-","(MCF7_39_B05)","(8, 127498092, 127761570)","-","(CHORI518_004_E13)","(8, 127754758, 127953461)","-","(CHORI520_R1_15_I10, CHORI520_R1_17_J20, CHORI520_R1_7_E12, CHORI520_R1_1_H06)","(8, 128082152, 128345630)","-","(CHORI520_R1_7_E10)"]
["(12, 84760703, 85024181)","+","(MCF7_1-12M15)","(12, 85628966, 85892444)","+","(MCF7_1-56d17)","(12, 85745553, 86009031)","+","(MCF7_1-56d17)","(12, 85480631, 85744109)","+","(CHORI518_005_G06)","(12, 85535159, 85798637)","+","(CHORI518_005_G06)"]
["(20, 32332594, 32508089)","-","(CHORI518_009_F23, CHORI518_007_P17)","(20, 33093554, 33357032)","-","(CHORI518_007_A15)","(20, 32285303, 32505697)","-","(CHORI520_R1_19_P03, CHORI520_R1_23_I19)","(20, 32932167, 33195645)","-","(CHORI520_R1_14_J21)","(20, 33768106, 34031584)","-","(CHORI520_R1_15_P18)"]
["(20, 40238206, 40438622)","-","(MCF7_1-56a19, MCF7_1-16L9)","(20, 39770846, 40034324)","-","(MCF7_1-55g07)","(20, 40012836, 40251332)","-","(MCF7_1-132B21, MCF7_36_L24)","(20, 40501183, 40764661)","-","(CHORI520_R1_23_A09)","(20, 40531298, 40794776)","-","(CHORI520_R1_15_P18)"]
["(6, 8570027, 8833505)","+","(MCF7_1-16N6)","(6, 8612461, 8875939)","+","(MCF7_38_P20)","(6, 9057432, 9320910)","+","(CHORI518_020_N03)","(6, 6730359, 6993837)","+","(CHORI520_R1_20_M07)","(6, 7544420, 7807898)","+","(CHORI520_R1_18_P04)","(6, 8133636, 8397114)","+","(CHORI520_R1_18_P04)","(6, 8384723, 8648156)","+","(CHORI520_R1_9_M02, CHORI520_R1_15_M22)"]
["(17, 47665335, 47928813)","-","(MCF7_1-18I24)","(17, 49337085, 49600563)","-","(MCF7_1-53a09)","(17, 49776992, 50040470)","-","(CHORI518_019_M06)","(17, 47434929, 47698407)","-","(CHORI518_015_P19)","(17, 48442045, 48705523)","-","(CHORI518_001_P03)","(17, 49063280, 49326758)","-","(CHORI518_027_L08)","(17, 49109417, 49372895)","-","(CHORI518_024_I10)"]
["(8, 122015561, 122279039)","-","(MCF7_1-30i21)","(8, 123377838, 123641316)","-","(CHORI520_R1_26_A21)","(8, 122751640, 122984214)","-","(CHORI520_R1_2_H08, CHORI520_R1_18_G21)","(8, 121712775, 121976253)","-","(CHORI520_R1_16_P12)","(8, 123708250, 123971728)","-","(CHORI520_R1_6_E09)","(8, 121023890, 121113886)","-","(CHORI520_R1_12_B18, CHORI520_R1_3_G03, CHORI520_R1_21_C09, CHORI520_R1_6_O04, CHORI520_R1_5_N18, CHORI520_R1_21_H14)","(8, 121537523, 121701514)","-","(CHORI520_R1_16_N01, CHORI520_R1_16_G03)","(8, 122728894, 122992372)","-","(CHORI520_R1_1_D08)","(8, 123806121, 124069599)","-","(CHORI520_R1_22_M08)"]
["(20, 45014651, 45278129)","-","(MCF7_1-80H12)","(20, 45675038, 45938516)","-","(MCF7_1-14E11)","(20, 45129804, 45393282)","-","(MCF7_1-1D13)","(20, 45565132, 45756525)","-","(MCF7_1-21C24, MCF7_40_O01)","(20, 45004988, 45204511)","-","(MCF7_1-23I6, MCF7_1-98H2, MCF7_1-78P21, MCF7_1-157I22)","(20, 45174103, 45262961)","-","(MCF7_1-55I11, MCF7_1-135D20, MCF7_1-108H5, MCF7_1-10D13, MCF7_1-162M24, MCF7_1-38G5, MCF7_38_G05, MCF7_38_P15, MCF7_1-167J20, MCF7_1-41B14, MCF7_1-151F12, MCF7_1-31E14, MCF7_1-13F1, MCF7_1-129A15, MCF7_1-154K22, MCF7_1-28H13)","(20, 45286729, 45550207)","-","(MCF7_1-19O10)","(20, 45587517, 45850995)","-","(MCF7_1-145B6)","(20, 45034069, 45297547)","-","(CHORI518_022_N16)","(20, 45135959, 45399437)","-","(CHORI518_003_K19)","(20, 46246333, 46509811)","-","(CHORI518_015_H12)"]
["(8, 122191737, 122455215)","+","(MCF7_1-71O17)","(8, 122835551, 123099029)","+","(CHORI520_R1_18_P03)","(8, 124775320, 124761257)","+","(CHORI520_R1_9_B12, CHORI520_R1_1_L17, CHORI520_R1_12_J02)","(8, 124279070, 124542548)","+","(CHORI520_R1_15_A07)","(8, 120288436, 120551914)","+","(CHORI520_R1_15_I01)","(8, 121505063, 121768541)","+","(CHORI520_R1_19_D24)","(8, 120798097, 121061575)","+","(CHORI520_R1_10_F10)","(8, 121328462, 121531065)","+","(CHORI520_R1_14_K13, CHORI520_R1_24_F15)","(8, 122961294, 123224772)","+","(CHORI520_R1_1_D08)","(8, 123495950, 123668637)","+","(CHORI520_R1_18_E06, CHORI520_R1_21_M05)","(8, 123595220, 123767907)","+","(CHORI520_R1_18_E06, CHORI520_R1_21_M05)","(8, 124049523, 124313001)","+","(CHORI520_R1_22_M08)"]
["(20, 45261988, 45525466)","+","(MCF7_1-12A8)","(20, 45218878, 45482356)","+","(MCF7_1-32m11)","(20, 45273515, 45494129)","+","(MCF7_1-58K11, MCF7_1-30o17, MCF7_1-107O2)","(20, 45434988, 45698466)","+","(MCF7_1-11N23)","(20, 45739929, 46003407)","+","(MCF7_1-56j02)","(20, 45746035, 46009513)","+","(MCF7_1-49a18)","(20, 45761227, 45926992)","+","(MCF7_1-18L12, MCF7_1-29f20, MCF7_1-50c05, MCF7_1-8G1)","(20, 46936634, 47102399)","+","(MCF7_1-18L12, MCF7_1-29f20, MCF7_1-50c05, MCF7_1-8G1)","(20, 47369060, 47632538)","+","(MCF7_38_F21)","(20, 46021830, 46285308)","+","(CHORI518_003_K19)","(20, 46258533, 46522011)","+","(CHORI518_015_H12)","(20, 47117033, 47380511)","+","(CHORI520_R1_13_A20)"]
["(8, 88268686, 88532164)","-","(MCF7_1-9O4)","(8, 90775397, 91038875)","-","(MCF7_37_K18)","(8, 90893482, 91156960)","-","(MCF7_37_K18)","(8, 91733845, 91997323)","-","(MCF7_1-14M24)","(8, 88817069, 89080547)","-","(CHORI520_R1_6_L02)","(8, 88729090, 88733058)","-","(CHORI520_R1_21_N21, CHORI520_R1_20_G09, CHORI520_R1_4_L24, CHORI520_R1_2_A17, CHORI520_R1_21_J21)","(8, 90141200, 90404678)","-","(CHORI520_R1_5_A11)","(8, 88455744, 88719222)","-","(CHORI520_R1_15_I01)","(8, 88569339, 88832817)","-","(CHORI520_R1_24_N12)","(8, 88964674, 89215610)","-","(CHORI520_R1_21_P18, CHORI520_R1_25_I12)","(8, 89037459, 89288395)","-","(CHORI520_R1_21_P18, CHORI520_R1_25_I12)","(8, 89489067, 89752545)","-","(CHORI520_R1_4_H20)","(8, 92084530, 92348008)","-","(CHORI520_R1_19_J03)"]
["(20, 56191511, 56454989)","-","(MCF7_1-54n10)","(20, 54960570, 55224048)","-","(MCF7_1-13H17)","(20, 55019209, 55282687)","-","(MCF7_1-21A15)","(20, 54948531, 55212009)","-","(MCF7_1-86J15)","(20, 55076181, 55339659)","-","(MCF7_1-158N21)","(20, 55020980, 55112852)","-","(MCF7_1-34b22, MCF7_1-156I16, MCF7_1-21K16, MCF7_1-97P3, MCF7_1-123G10, MCF7_1-51D23, MCF7_1-111I17, MCF7_1-155O5, MCF7_1-51d23, MCF7_1-24G6, MCF7_1-22F15)","(20, 54981956, 55181479)","-","(MCF7_1-23I6, MCF7_1-98H2, MCF7_1-78P21, MCF7_1-157I22)","(20, 54563793, 54827271)","-","(MCF7_38_F21)","(20, 54961034, 55224512)","-","(MCF7_1-151L13)","(20, 54960956, 55212170)","-","(MCF7_1-151E21, MCF7_1-110P1, MCF7_1-102M10)","(20, 55180378, 55224158)","-","(MCF7_1-54M14, MCF7_1-54m14, MCF7_1-157C23, MCF7_1-88E15)","(20, 55000393, 55170800)","-","(MCF7_1-146M8, MCF7_1-57n06, MCF7_1-57N6, MCF7_1-109H17)","(20, 54957271, 55220749)","-","(MCF7_1-10L3)","(20, 55095219, 55136539)","-","(CHORI518_008_H16, CHORI518_016_E04)","(20, 55647512, 55682536)","-","(CHORI518_025_M20, CHORI518_018_H01, CHORI518_017_B13)","(20, 54572309, 54835787)","-","(CHORI518_019_D14)"]
["(17, 54230654, 54447239)","-","(MCF7_1-90F9, MCF7_1-95D18)","(17, 54390690, 54416791)","-","(MCF7_1-69F1, MCF7_1-41G20, MCF7_1-80G18, MCF7_1-91L21, MCF7_1-39B19, MCF7_39_B19, MCF7_1-86B4, MCF7_1-62P11, MCF7_1-43K5, MCF7_1-86C2, MCF7_1-168M9, MCF7_35_A16)","(17, 56672403, 56935881)","-","(MCF7_1-47g17)","(17, 56842578, 57106056)","-","(MCF7_38_L05)","(17, 54231343, 54494821)","-","(MCF7_1-18P11)","(17, 53805862, 54069340)","-","(MCF7_35_A12)","(17, 55931563, 56195041)","-","(MCF7_1-124I17)","(17, 53957357, 54103148)","-","(MCF7_1-66C22, MCF7_1-9P15)","(17, 53943238, 54143654)","-","(MCF7_1-56a19, MCF7_1-16L9)","(17, 55043235, 55269584)","-","(MCF7_1-151N7, MCF7_1-13G5, MCF7_1-52j15)","(17, 55653106, 55916584)","-","(MCF7_38_J15)","(17, 56623874, 56664853)","-","(MCF7_1-94M14, MCF7_1-89F5, MCF7_1-148L5, MCF7_1-138H21, MCF7_1-45E13, MCF7_1-159O13, MCF7_1-160H16, MCF7_1-58D14, MCF7_1-54A1, MCF7_1-147K12, MCF7_1-54c03, MCF7_1-54C3, MCF7_1-132D17, MCF7_1-77L13, MCF7_1-5I19, MCF7_1-124A6, MCF7_1-89I18, MCF7_1-159F18, MCF7_1-49J15)","(17, 56472667, 56736145)","-","(MCF7_1-138O15)","(17, 56869820, 57133298)","-","(MCF7_1-31g15)","(17, 56844842, 57036235)","-","(MCF7_1-21C24, MCF7_40_O01)","(17, 57169580, 57433058)","-","(MCF7_1-26c06)","(17, 57027745, 57291223)","-","(MCF7_1-8K17)","(17, 55919026, 56182504)","-","(CHORI518_021_O23)","(17, 54516195, 54779673)","-","(CHORI518_006_E06)","(17, 54955164, 55218642)","-","(CHORI518_006_E06)","(17, 54930699, 55194177)","-","(CHORI518_004_I07)","(17, 57905884, 58169362)","-","(CHORI520_R1_24_J11)"]
["(20, 51408256, 51671734)","-","(MCF7_1-71O17)","(20, 51296098, 51559576)","-","(MCF7_1-16P22)","(20, 51463916, 51702412)","-","(MCF7_1-132B21, MCF7_36_L24)","(20, 48649249, 48738107)","-","(MCF7_1-55I11, MCF7_1-135D20, MCF7_1-108H5, MCF7_1-10D13, MCF7_1-162M24, MCF7_1-38G5, MCF7_38_G05, MCF7_38_P15, MCF7_1-167J20, MCF7_1-41B14, MCF7_1-151F12, MCF7_1-31E14, MCF7_1-13F1, MCF7_1-129A15, MCF7_1-154K22, MCF7_1-28H13)","(20, 48574427, 48837905)","-","(MCF7_1-19O10)","(20, 51401519, 51664997)","-","(MCF7_1-49a18)","(20, 51356395, 51619873)","-","(MCF7_1-145B6)","(20, 50150435, 50413913)","-","(MCF7_1-31f19)","(20, 50294917, 50558395)","-","(MCF7_1-31f19)","(20, 51595446, 51619872)","-","(MCF7_1-1A2, MCF7_1-145O12, MCF7_1-29c09, MCF7_1-29C9, MCF7_37_P20, MCF7_1-26l06, MCF7_1-22B20, MCF7_1-75M20, MCF7_1-100O14, MCF7_1-19I13, MCF7_1-5H9, MCF7_1-55f13, MCF7_1-90K4, MCF7_1-116C1)","(20, 52033552, 52297030)","-","(MCF7_1-97C20)","(20, 52558042, 52821520)","-","(MCF7_38_O02)","(20, 53341459, 53592673)","-","(MCF7_1-151E21, MCF7_1-110P1, MCF7_1-102M10)","(20, 53024899, 53288377)","-","(CHORI518_010_F13)","(20, 49045181, 49308659)","-","(CHORI518_009_J01)","(20, 49917502, 50180980)","-","(CHORI518_022_H11)","(20, 52460659, 52724137)","-","(CHORI518_006_I10)","(20, 49607135, 49870613)","-","(CHORI518_027_D08)","(20, 49966095, 50229573)","-","(CHORI518_021_B13)","(20, 50067131, 50293775)","-","(CHORI518_008_K21, CHORI518_011_C10)","(20, 50314414, 50456700)","-","(CHORI518_011_B03, CHORI518_019_F12)","(20, 50245154, 50508632)","-","(CHORI518_009_M06)","(20, 51097503, 51360981)","-","(CHORI518_016_E10)","(20, 52179448, 52442926)","-","(CHORI518_003_L19)","(20, 52507294, 52770772)","-","(CHORI520_R1_17_F07)"]
["(17, 56195707, 56436039)","+","(MCF7_1-67M17, MCF7_1-64A13)","(17, 56137280, 56400758)","+","(MCF7_39_H02)","(17, 54149941, 54206765)","+","(MCF7_1-19P17, MCF7_1-73I23, MCF7_1-34G14)","(17, 56214019, 56327550)","+","(MCF7_1-93C20, MCF7_1-30p20, MCF7_1-43O24, MCF7_1-150I3, MCF7_1-30P20, MCF7_1-7J14, MCF7_1-143D18, MCF7_1-156K22, MCF7_1-3B13)","(17, 57449274, 57712752)","+","(MCF7_1-24L9)","(17, 57731788, 57995266)","+","(MCF7_1-4J18)","(17, 54768184, 55031662)","+","(MCF7_1-11L22)","(17, 54372752, 54636230)","+","(MCF7_1-72G9)","(17, 54447887, 54674236)","+","(MCF7_1-151N7, MCF7_1-13G5, MCF7_1-52j15)","(17, 55841691, 56105169)","+","(MCF7_38_J15)","(17, 56684075, 56892270)","+","(MCF7_1-141F19, MCF7_36_B13)","(17, 56903030, 57166508)","+","(MCF7_1-31g15)","(17, 57156871, 57420349)","+","(MCF7_1-26c06)","(17, 57232674, 57350745)","+","(MCF7_1-3B22, MCF7_1-8B13)","(17, 57433810, 57551881)","+","(MCF7_1-3B22, MCF7_1-8B13)","(17, 57231144, 57494622)","+","(MCF7_1-32m11)","(17, 57333473, 57425345)","+","(MCF7_1-34b22, MCF7_1-156I16, MCF7_1-21K16, MCF7_1-97P3, MCF7_1-123G10, MCF7_1-51D23, MCF7_1-111I17, MCF7_1-155O5, MCF7_1-51d23, MCF7_1-24G6, MCF7_1-22F15)","(17, 58433333, 58696811)","+","(MCF7_1-46m17)","(17, 58528803, 58792281)","+","(MCF7_1-46m17)","(17, 56497915, 56761393)","+","(CHORI518_024_N05)","(17, 53838744, 54102222)","+","(CHORI518_021_O23)","(17, 54017714, 54281192)","+","(CHORI518_010_F13)","(17, 55007926, 55271404)","+","(CHORI518_017_A15)","(17, 55272399, 55535877)","+","(CHORI518_017_A15)","(17, 56678245, 56941723)","+","(CHORI518_004_I07)","(17, 56546197, 56809675)","+","(CHORI518_019_H21)"]
["(20, 52063393, 52105210)","+","(MCF7_1-90K7, MCF7_1-126M4, MCF7_1-89C3, MCF7_1-152M23, MCF7_1-12O5, MCF7_1-47N21)","(20, 52770328, 53033806)","+","(MCF7_1-20L18)","(20, 52008943, 52238246)","+","(MCF7_1-137G17, MCF7_1-67H12)","(20, 51971697, 52154253)","+","(MCF7_1-66M3, MCF7_1-124I19, MCF7_1-87I14)","(20, 52988956, 53043999)","+","(MCF7_1-6B19, MCF7_1-30l01, MCF7_1-31p13, MCF7_1-7J20, MCF7_1-14P3)","(20, 52647808, 52911286)","+","(MCF7_1-12D1)","(20, 53585436, 53848914)","+","(MCF7_1-87P24)","(20, 52250478, 52396269)","+","(MCF7_1-66C22, MCF7_1-9P15)","(20, 53468204, 53676399)","+","(MCF7_1-141F19, MCF7_36_B13)","(20, 52908973, 53128314)","+","(MCF7_1-31o23, MCF7_1-6L9)","(20, 52160757, 52363660)","+","(MCF7_1-73O23, MCF7_1-4L22, MCF7_1-6G17)","(20, 52739188, 53002666)","+","(MCF7_1-56j02)","(20, 50090354, 50353832)","+","(MCF7_1-2B5)","(20, 51844772, 52108250)","+","(MCF7_1-2B5)","(20, 51988296, 52251774)","+","(MCF7_1-105A20)","(20, 52473135, 52736613)","+","(MCF7_1-105A20)","(20, 54333954, 54597432)","+","(MCF7_1-97C20)","(20, 52746745, 53010223)","+","(MCF7_38_O02)","(20, 53589578, 53853056)","+","(MCF7_1-151L13)","(20, 50891606, 51155084)","+","(CHORI518_016_A23)","(20, 51044509, 51307987)","+","(CHORI518_009_O19)","(20, 51022523, 51286001)","+","(CHORI518_021_I03)","(20, 53085147, 53348625)","+","(CHORI518_014_H11)","(20, 49857488, 50120966)","+","(CHORI518_027_D08)","(20, 53716629, 53980107)","+","(CHORI518_021_B13)","(20, 52193180, 52335466)","+","(CHORI518_011_B03, CHORI518_019_F12)","(20, 50910535, 51174013)","+","(CHORI518_009_M06)","(20, 51308226, 51571704)","+","(CHORI518_016_E10)","(20, 52034150, 52297628)","+","(CHORI518_019_D14)","(20, 52386000, 52649478)","+","(CHORI518_003_L19)","(20, 52996817, 53167785)","+","(CHORI518_016_B05, CHORI518_024_A10, CHORI518_003_P22)","(20, 53043389, 53214357)","+","(CHORI518_016_B05, CHORI518_024_A10, CHORI518_003_P22)","(20, 53686184, 53837451)","+","(CHORI518_006_L21, CHORI518_025_P10, CHORI518_010_B01, CHORI518_007_O10)","(20, 53043394, 53306872)","+","(CHORI520_R1_14_J21)"]

{"sheet":"Table S8","index":5,"n_rows":4,"n_cols":7,"rows_kept":4,"flags":["formulas_cached_only"]}
["BAC Clone","EST Accession","Breakpoint location in EST","Fusion site in BAC (from ESP)","Fusion site in EST","Distance between fusion sites","Tissues used for EST library construction"]
["MCF7_1-5I19","BU944045","169-173","chr17:56,735,636-56,736,466(-) with chr20:48,849,694-48,849,843(+)","chr20:48,844,976-48,845,120(+) with chr17:56,800,468-56,824,751(+) ",{"v":34546,"d":"34,546"},"adenocarcinoma cell line (probably MCF7)."]
["MCF7_1-97B19","CN272097","317-319","chr5:127,358,074-127,358,505(+) with chr5:127,261,083-127,261,529(-)","chr5:127,447,984-127,448,302(+) with chr5:127,330,315-127,330,521(-)",{"v":79834,"d":"79,834"},"embryonic stem cell, retinoic acid and mitogen-treated hES cell line H7"]
["MCF7_39_A11","DR000174","446-466","chr16:69,660,986-69,661,714 (+) with chr1:143,629,546-143,629,898(-)","chr1:143,595,952-143,605,659(-) with chr16:69,753,998-69,754,181(-)",{"v":57110,"d":"57,110"},"Fetal Brain"]

{"sheet":"Table S10","index":6,"n_rows":158,"n_cols":9,"rows_kept":158,"flags":["formulas_cached_only"]}
["BES Name","BES Length","Chrom","Coordinate","Strand","Min. Phred","Base in BES","Base in Genome","Notes"]
["CHORI5141E03TR",748,"X",22413042,-1,57,"C","T"]
["CHORI5149I05TF",652,"X",22413042,-1,33,"C","T"]
["CHORI520R14P16TF",726,"X",25604686,1,48,"G","A"]
["CHORI520R19J15TF",705,"X",25604686,1,61.3,"G","A"]
["PM1014D08TF",358,"X",133910713,-1,42,"C","A"]
["PM1014D14TF",359,"X",133910713,-1,43,"C","A"]
["PM1014L08TF",356,"X",133910713,-1,32.3,"C","A"]
["CHORI520R123N15TR",541,1,24762694,-1,51.2,"G","C"]
["CHORI518024D17TF",601,1,24762694,-1,52.5,"G","C"]
["CHORI520R126M11TF",751,1,53587869,-1,56.8,"A","G"]
["CHORI520R122P02TF",644,1,53587869,-1,32,"A","G"]
["CHORI520R12N20TR",503,1,114780176,1,58.3,"T","C"]
["CHORI520R113H23TR",552,1,114780176,1,55.8,"T","C"]
["CHORI51422C01TR",486,1,161209473,-1,41,"C","T"]
["CHORI518002J05TR",692,1,161209473,-1,43,"C","T"]
["CHORI520R114O17TR",673,2,986887,-1,55.1,"A","G"]
["CHORI520R115B08TR",738,2,986887,-1,54.5,"A","G"]
["CHORI520R114O17TR",673,2,986989,-1,55.1,"T","G"]
["CHORI520R115B08TR",738,2,986989,-1,54.5,"T","G"]
["CHORI520R124L06TR",602,2,24143884,1,53.2,"G","A"]
["CHORI518015L14TR",727,2,24143884,1,56.8,"G","A"]
["CHORI520R112P07TF",427,2,39363958,1,57.4,"T","C"]
["CHORI520R19C16TF",611,2,39363958,1,55.3,"T","C"]
["CHORI520R18M07TR",611,2,41245667,-1,54.9,"C","T"]
["CHORI520R112L17TF",676,2,41245667,-1,54.8,"C","T"]
["CHORI510R32C13TF",726,2,43678840,1,36.4,"C","T"]
["CHORI518020H15TR",684,2,43678840,1,38.4,"C","T"]
["PM1009B10TF",394,2,63329981,1,57,"A","G"]
["PM1011M11TF",732,2,63329981,1,59.4,"A","G"]
["MCF734o01TF",884,3,22900994,1,53.1,"T","C"]
["MCF747l20TR",885,3,22900994,-1,50.5,"A","G"]
["MCF728h22TR",855,3,64213491,1,37,"C","G"]
["MCF731l04TR",737,3,64213491,1,51.7,"C","G"]
["CHORI51418D12TF",736,3,95262799,-1,54.6,"G","C"]
["CHORI51422O03TF",673,3,95262799,-1,32.1,"G","C"]
["2B421020D03TF",714,3,151280623,1,61.7,"T","C"]
["MCF726h13TR",836,3,151280623,-1,47.5,"A","G"]
["MCF734k13TF",833,3,151481370,-1,57.2,"A","G"]
["MCF753a21TF",582,3,151481370,-1,31.1,"A","G"]
["CHORI520R119M14TF",648,3,198114024,-1,34.6,"G","A"]
["CHORI518003M16TF",627,3,198114024,-1,52.5,"T","A"]
["PM1009B24TR",650,4,30431651,-1,56.1,"C","T"]
["PM1011A06TR",690,4,30431651,-1,48.2,"C","T"]
["PM1009D22TR",749,4,95646383,-1,56.6,"G","A"]
["PM1011M03TR",716,4,95646383,-1,52.6,"G","A"]
["2B421021H01TF",727,4,120857871,1,59.4,"A","G"]
["CHORI5141B05TR",581,4,120857871,-1,35,"T","C"]
["2B421006O13TF",725,4,190852170,1,57,"T","A"]
["MCF754j04TF",491,4,190852170,-1,31,"A","T"]
["2B421006O13TF",725,4,190852187,1,58.4,"A","G"]
["MCF754j04TF",491,4,190852187,-1,37,"T","C"]
["CHORI518011D23TF",663,5,39633439,1,59.1,"A","T"]
["CHORI518007C18TF",790,5,39633439,1,58.1,"A","T"]
["CHORI518011D23TF",663,5,39633654,1,59,"C","T"]
["CHORI518007C18TF",790,5,39633654,1,58.1,"C","T"]
["CHORI520R119C16TF",652,5,97901289,-1,56.7,"T","G"]
["IGBR12A11TF",566,5,97901289,-1,48.8,"T","G"]
["IGBR03H23TR",643,5,107344264,-1,57.6,"A","T"]
["PM1001B17TF",657,5,107344264,-1,50.9,"A","T"]
["CHORI518020D02TR",751,5,151675048,1,54.8,"C","T"]
["CHORI518006H14TR",598,5,151675048,1,51.8,"C","T"]
["CHORI518020D02TR",751,5,151675218,1,54.8,"A","G"]
["CHORI518006H14TR",598,5,151675218,1,45.8,"A","G"]
["MCF746e14TR",618,5,169080077,1,50.4,"T","C"]
["CHORI518013H21TF",737,5,169080077,1,55.6,"T","C"]
["CHORI520R115P07TR",662,6,23235853,1,59.5,"A","G"]
["CHORI520R122O15TR",696,6,23235853,1,57,"A","G"]
["CHORI520R115P07TR",662,6,23236284,1,47,"G","A"]
["CHORI520R122O15TR",696,6,23236284,1,57,"G","A"]
["IGBR04F04TF",703,6,55317623,-1,57,"A","G"]
["IGBR04P12TF",690,6,55317623,1,53.7,"T","C"]
["2B421007H12TF",737,6,85569824,-1,53,"A","G"]
["2B421003B19TF",671,6,85569824,-1,54.2,"A","G"]
["CHORI520R124N09TF",647,7,4835976,1,57.2,"C","T"]
["CHORI518010M03TR",739,7,4835976,1,55.7,"C","T"]
["CHORI520R124N09TF",647,7,4836016,1,57.2,"A","G"]
["CHORI518010M03TR",739,7,4836016,1,55.7,"A","G"]
["CHORI520R124N09TF",647,7,4836027,1,57.2,"T","C"]
["CHORI518010M03TR",739,7,4836027,1,55.7,"T","C"]
["PM1010N19TF",719,7,14845003,1,57.7,"A","T"]
["PM1011G22TF",704,7,14845003,1,47.3,"A","T"]
["CHORI520R119H23TR",166,7,66046241,-1,43.4,"A","G"]
["CHORI510R315M04TF",660,7,66046241,-1,56.6,"A","G"]
["CHORI518021N13TR",675,7,83180627,-1,45,"T","C"]
["CHORI518011J17TF",679,7,83180627,-1,44.4,"T","C"]
["CHORI520R13M05TR",578,7,124182501,1,47,"A","G"]
["CHORI518016M20TR",703,7,124182501,1,58.8,"A","G"]
["CHORI51418G22TR",587,7,125576531,1,37.4,"G","A"]
["CHORI51414M05TR",706,7,125576531,1,49.1,"G","A"]
["MCF733e18TF",813,8,14051286,-1,34.8,"C","T"]
["CHORI518017D20TF",597,8,14051286,1,39.2,"G","A"]
["CHORI520R16B18TF",311,8,77827538,-1,41,"A","C","intron of ZFH4, zinc-finger"]
["CHORI520R119F03TR",702,8,77827538,-1,52,"A","C"]
["2B421004I07TF",643,8,115834223,1,37,"A","G"]
["2B421019C16TR",696,8,115834223,1,57,"A","G"]
["CHORI520R121G14TF",694,8,115904618,-1,35,"G","T"]
["CHORI510R312I01TR",594,8,115904618,-1,36.5,"G","T"]
["CHORI520R19D01TR",584,8,121946461,-1,56.6,"C","A"]
["CHORI520R11N22TR",606,8,121946461,-1,54.5,"C","A"]
["MCF731h16TR",767,8,132704177,1,52.4,"C","T"]
["MCF729o15TR",378,8,132704177,1,51.5,"C","T"]
["MCF731h16TR",767,8,132704363,1,52.4,"T","G"]
["MCF729o15TR",378,8,132704363,1,30.4,"T","G"]
["MCF727o24TF",870,9,32222109,-1,55,"T","C"]
["MCF727o23TF",862,9,32222109,-1,42.6,"T","C"]
["2B421012C21TR",651,9,64927042,-1,61,"C","T"]
["PM1004B24TF",757,9,64927042,-1,58.7,"C","T"]
["CHORI510R314H15TF",643,11,95052082,1,43,"T","C"]
["CHORI510R316M12TF",600,11,95052082,1,45.9,"T","C"]
["CHORI510R314A19TF",758,11,95052082,1,54.2,"T","C"]
["CHORI5148K10TR",770,11,98301275,1,49.7,"A","G"]
["CHORI5148J16TR",747,11,98301275,1,53.3,"A","G"]
["CHORI518026N23TR",396,11,126394017,1,35.6,"G","A"]
["CHORI518005G23TR",601,11,126394017,1,53.9,"G","A"]
["CHORI520R115D01TF",431,12,32173683,-1,31,"T","C"]
["2B421025D15TR",308,12,32173683,-1,41.6,"T","C"]
["MCF747j08TR",893,12,59616713,1,52.7,"T","C"]
["MCF738C18TF",688,12,59616713,1,36.5,"T","C"]
["2B421026C23TF",634,13,77739691,1,63.5,"T","C"]
["2B421010G20TR",701,13,77739691,1,37.9,"T","C"]
["CHORI518019H01TR",653,13,106661233,1,42.8,"T","C","intron of unknown gene"]
["CHORI518015E19TR",717,13,106661233,1,40.6,"T","C"]
["CHORI5145H02TF",725,14,40116167,1,36.8,"T","C"]
["CHORI518004B22TF",774,14,40116167,1,51.2,"T","C"]
["2B421008E11TF",541,14,80429695,-1,40.4,"A","G"]
["MCF732f07TR",726,14,80429695,-1,54.1,"A","G"]
["CHORI518005G19TR",277,14,100716762,1,37.4,"G","C"]
["CHORI518023I02TR",723,14,100716762,1,54.1,"G","C"]
["CHORI520R126H11TR",702,15,56643898,-1,46.3,"T","C"]
["CHORI518002L04TF",725,15,56643898,-1,55.9,"T","C"]
["CHORI518004A23TR",699,15,83048523,-1,50.6,"G","C"]
["CHORI518013M05TR",576,15,83048523,-1,38.5,"G","C"]
["CHORI510R37C23TR",725,16,44943382,1,37.1,"G","A"]
["CHORI518025K01TF",724,16,44943382,1,59.3,"G","A"]
["CHORI510R37C23TR",725,16,44943439,1,36,"T","A"]
["CHORI518025K01TF",724,16,44943439,1,59.3,"T","A"]
["CHORI520R120C19TF",661,16,44974797,1,61.4,"T","G"]
["CHORI520R17E15TR",499,16,44974797,1,53,"T","G"]
["PM1010C13TR",348,17,7241335,1,41.4,"G","A"]
["PM1011A19TR",193,17,7241335,1,39.4,"G","A"]
["MCF751f08TF",921,17,55262732,1,50.2,"G","A"]
["MCF749b16TF",891,17,55262732,1,50,"G","A"]
["MCF753a17TR",690,17,57019050,1,35,"G","T"]
["MCF728i19TF",858,17,57019050,1,38.8,"G","T"]
["MCF728h17TR",818,17,57019050,1,36.2,"G","T"]
["CHORI518010K23TF",770,17,73934667,-1,53,"C","G"]
["CHORI518010M09TF",794,17,73934667,-1,44.6,"C","G"]
["CHORI51424P09TF",723,19,58548161,1,56.3,"T","A"]
["CHORI518009O15TR",602,19,58548161,-1,55.9,"A","T"]
["CHORI520R120K15TR",716,20,48320343,-1,54,"T","C"]
["CHORI518008G14TF",722,20,48320343,-1,37,"T","C"]
["CHORI518026K17TF",702,20,53524771,1,37,"A","G"]
["CHORI518023G09TR",714,20,53524771,1,32,"A","G"]
["2B421001I24TF",463,21,37087172,-1,57.1,"A","G"]
["2B421003C18TF",732,21,37087172,1,52.7,"T","C"]
["CHORI510R311C21TR",737,21,37468092,1,57,"T","C"]
["CHORI510R314B15TR",783,21,37468092,-1,48,"A","G"]

{"sheet":"Table S12","index":7,"n_rows":26,"n_cols":12,"rows_kept":26,"flags":["formulas_cached_only"]}
["mutation","CpG/CpG","CpA/TpG","CpT/ApG","CpC/GpG","total",null,"GpC/GpC","TpC/GpA","ApC/GpT","CpC/GpG","total"]
[]
["C:G --> T:A",{"v":942,"d":"942 "},{"v":568,"d":"568 "},{"v":762,"d":"762 "},{"v":428,"d":"428 "},{"v":2700,"d":"2,700 "},null,{"v":516,"d":"516 "},{"v":713,"d":"713 "},{"v":854,"d":"854 "},{"v":617,"d":"617 "},{"v":2700,"d":"2,700 "}]
[null,{"v":0.3488888888888889,"d":"34.9%"},{"v":0.21037037037037037,"d":"21.0%"},{"v":0.2822222222222222,"d":"28.2%"},{"v":0.15851851851851853,"d":"15.9%"},null,null,{"v":0.19111111111111112,"d":"19.1%"},{"v":0.26407407407407407,"d":"26.4%"},{"v":0.3162962962962963,"d":"31.6%"},{"v":0.2285185185185185,"d":"22.9%"}]
[]
["C:G --> A:T",{"v":104,"d":"104 "},{"v":229,"d":"229 "},{"v":230,"d":"230 "},{"v":187,"d":"187 "},{"v":750,"d":"750 "},null,{"v":140,"d":"140 "},{"v":206,"d":"206 "},{"v":241,"d":"241 "},{"v":163,"d":"163 "},{"v":750,"d":"750 "}]
[null,{"v":0.13866666666666666,"d":"13.9%"},{"v":0.30533333333333335,"d":"30.5%"},{"v":0.30666666666666664,"d":"30.7%"},{"v":0.24933333333333332,"d":"24.9%"},null,null,{"v":0.18666666666666668,"d":"18.7%"},{"v":0.27466666666666667,"d":"27.5%"},{"v":0.32133333333333336,"d":"32.1%"},{"v":0.21733333333333332,"d":"21.7%"}]
[]
["C:G --> G:C",{"v":85,"d":"85 "},{"v":204,"d":"204 "},{"v":278,"d":"278 "},{"v":148,"d":"148 "},{"v":715,"d":"715 "},null,{"v":120,"d":"120 "},{"v":264,"d":"264 "},{"v":191,"d":"191 "},{"v":140,"d":"140 "},{"v":715,"d":"715 "}]
[null,{"v":0.11888111888111888,"d":"11.9%"},{"v":0.2853146853146853,"d":"28.5%"},{"v":0.3888111888111888,"d":"38.9%"},{"v":0.206993006993007,"d":"20.7%"},null,null,{"v":0.16783216783216784,"d":"16.8%"},{"v":0.36923076923076925,"d":"36.9%"},{"v":0.26713286713286716,"d":"26.7%"},{"v":0.1958041958041958,"d":"19.6%"}]
[]
[]
["mutation","TpA/TpA","CpA/TpG","TpC/GpA","TpT/ApA","total",null,"ApT/ApT","CpT/ApG","ApC/GpT","TpT/ApA","total"]
[]
["T:A --> C:G",{"v":625,"d":"625 "},{"v":588,"d":"588 "},{"v":329,"d":"329 "},{"v":624,"d":"624 "},{"v":2166,"d":"2,166 "},null,{"v":827,"d":"827 "},{"v":477,"d":"477 "},{"v":364,"d":"364 "},{"v":498,"d":"498 "},{"v":2166,"d":"2,166 "}]
[null,{"v":0.288550323176362,"d":"28.9%"},{"v":0.27146814404432135,"d":"27.1%"},{"v":0.15189289012003693,"d":"15.2%"},{"v":0.2880886426592798,"d":"28.8%"},null,null,{"v":0.38180978762696216,"d":"38.2%"},{"v":0.22022160664819945,"d":"22.0%"},{"v":0.1680517082179132,"d":"16.8%"},{"v":0.2299168975069252,"d":"23.0%"}]
[]
["T:A --> G:C",{"v":105,"d":"105 "},{"v":183,"d":"183 "},{"v":108,"d":"108 "},{"v":208,"d":"208 "},{"v":604,"d":"604 "},null,{"v":156,"d":"156 "},{"v":108,"d":"108 "},{"v":128,"d":"128 "},{"v":212,"d":"212 "},{"v":604,"d":"604 "}]
[null,{"v":0.173841059602649,"d":"17.4%"},{"v":0.3029801324503311,"d":"30.3%"},{"v":0.17880794701986755,"d":"17.9%"},{"v":0.3443708609271523,"d":"34.4%"},null,null,{"v":0.288550323176362,"d":"28.9%"},{"v":0.271468144044321,"d":"27.1%"},{"v":0.151892890120037,"d":"15.2%"},{"v":0.28808864265928,"d":"28.8%"}]
[]
["T:A --> A:T",{"v":216,"d":"216 "},{"v":146,"d":"146 "},{"v":116,"d":"116 "},{"v":171,"d":"171 "},{"v":649,"d":"649 "},null,{"v":251,"d":"251 "},{"v":109,"d":"109 "},{"v":92,"d":"92 "},{"v":197,"d":"197 "},{"v":649,"d":"649 "}]
[null,{"v":0.33281972265023113,"d":"33.3%"},{"v":0.22496147919876733,"d":"22.5%"},{"v":0.17873651771956856,"d":"17.9%"},{"v":0.26348228043143296,"d":"26.3%"},null,null,{"v":0.386748844375963,"d":"38.7%"},{"v":0.1679506933744222,"d":"16.8%"},{"v":0.14175654853620956,"d":"14.2%"},{"v":0.3035439137134052,"d":"30.4%"}]
[]
["total novel mutations",{"$nulls":4},{"v":7584,"d":"7,584 "},{"$nulls":5},{"v":7584,"d":"7,584 "}]
[]
["Bold nucleotides indicate where the mutation took place."]

{"sheet":"Table S13","index":8,"n_rows":36,"n_cols":14,"rows_kept":36,"flags":["formulas_cached_only"]}
["BES","BES Length","Chrom","Location","Strand","Gene Name","RefSeq ID","Description","Base in BES","Base in Reference","Amino Acid Substition","Min Phred","Amino Acid Substition","Link"]
["MCF749c19TR",748,1,19811686,1,"LOC255104","NM_181719","hypothetical protein LOC255104","A","C","V>V",31.6,"V>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr1%3A19811676-19811696"]
["IGBR013K14TF",335,1,87092847,1,"BC025384","BC025384","HS2ST1 protein.","G","A","E>G",30.4,"E>G","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr1%3A87092837-87092857"]
["MCF734h03TF",888,1,157829874,1,"BC025732","BC025732","Novel protein","G","T","Q>P",57.8,"Q>P","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr1%3A157829864-157829884"]
["IGBR05L24TF",692,1,202004757,-1,"SNARK","NM_030952","hypothetical protein DKFZp434J037","T","C","R>R",56.7,"R>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr1%3A202004747-202004767"]
["IGBR08M05TF",351,2,20792093,-1,"GDF7","NM_182828","growth differentiation factor 7 preproprotein","T","G","F>L",35,"F>L","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr2%3A20792083-20792103"]
["IGBR09J22TF",310,2,31533103,-1,"XDH","NM_000379","xanthine dehydrogenase","A","G","E>E",31.3,"E>E","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr2%3A31533093-31533113"]
["2B421006B21TR",683,2,241183585,1,"ANKMY1","NM_016552","ankyrin repeat and MYND domain containing 1","C","T","I>V",58.2,"I>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr2%3A241183575-241183595"]
["MCF739J09TR",560,3,51953260,1,"PARP3","NM_001003935","poly (ADP-ribose) polymerase family, member 3","G","A","H>R",50.8,"H>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr3%3A51953250-51953270"]
["CHORI51422O03TF",674,3,95262799,-1,"DHFRL1","NM_176815","hypothetical protein LOC200895","G","C","P>A",32.1,"P>A","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr3%3A95262789-95262809"]
["PM1014H05TR",631,3,168506275,-1,"FLJ23049","NM_024687","hypothetical protein LOC79740","A","G","S>N",50.6,"S>N","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr3%3A168506265-168506285"]
["IGBR02P01TR",711,4,9017464,1,"AY509884","AY509884","Deubiquitinating enzyme 3","C","T","S>P",31,"S>P","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr4%3A9017454-9017474"]
["CHORI518016B20TR",713,4,123549988,-1,"CR936613","CR936613","Hypothetical protein DKFZp781P0474","G","A","D>D",47,"D>D","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr4%3A123549978-123549998"]
["CHORI5143I15TR",740,5,178439654,1,"ZNF354C","NM_014594","zinc finger protein 354C","G","C","L>V",49.2,"L>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr5%3A178439644-178439664"]
["2B421009D07TR",702,6,134184299,1,"BC032958","BC032958","MGC34034 protein","G","A","T>A",39,"T>A","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr6%3A134184289-134184309"]
["CHORI510R34M17TF",663,7,6397995,1,"ZDHHC4","NM_018106","zinc finger, DHHC domain containing 4","T","C","T>M",48,"T>M","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr7%3A6397985-6398005"]
["MCF747o24TR",760,7,72183400,-1,"TRIM50A","NM_178125","tripartite motif protein 50A","C","T","W>R",51.8,"W>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr7%3A72183390-72183410"]
["PM1014C23TF",749,9,122592380,-1,"OR1L6","NM_001004453","olfactory receptor, family 1, subfamily L","T","C","G>R",60.8,"G>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr9%3A122592370-122592390"]
["CHORI520R110J20TF",675,10,121683236,-1,"SEC23IP","NM_007190","Sec23-interacting protein p125","C","T","T>T",55.5,"T>T","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr10%3A121683226-121683246"]
["CHORI520R11D10TF",513,12,131461644,1,"AK092825","AK092825","Hypothetical protein FLJ35506.","A","G","R>C",45.4,"R>C","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr12%3A131461634-131461654"]
["CHORI510R313K22TR",734,13,31915937,-1,"U50529","U50529","Hypothetical protein (OTTHUMP00000018231).","T","A","D>V",50.8,"D>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr13%3A31915927-31915947"]
["CHORI520R117B04TR",629,14,157829874,-1,"AK095276","AK095276","Hypothetical protein FLJ37957","T","C","R>W",43,"R>W","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr14%3A90386005-90386025"]
["CHORI518001C08TF",648,15,53440011,1,"CCPG1","NM_020739","cell cycle progression 1","G","A","Y>H",49.7,"Y>H","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr15%3A53440001-53440021"]
["PM1014H06TF",290,17,31440141,-1,"CCL3","NM_002983","chemokine (C-C motif) ligand 3","C","T","L>P",52.3,"L>P","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A31440131-31440151"]
["CHORI518013A17TF",737,17,33805716,-1,"SOCS7","NM_014598","suppressor of cytokine signaling 7","C","T","K>R",43,"K>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A33805706-33805726"]
["CHORI520R114K12TR",528,17,38250182,1,"AOC2","NM_001158","amine oxidase, copper containing 2 isoform a","G","A","I>V",35,"I>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A38250172-38250192"]
["CHORI518015N07TR",668,17,55362307,1,"RPS6KB1","NM_003161","ribosomal protein S6 kinase, 70kDa, polypeptide","C","G","D>H",52.1,"D>H","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A55362297-55362317"]
["CHORI518010M09TF",795,17,73934667,-1,"DNAH17","NM_003727","dynein, axonemal, heavy polypeptide 17","C","G","E>Q",44.6,"E>Q","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A73934657-73934677"]
["CHORI520R118M23TF",645,19,41822259,1,"GIOT-1","NM_153257","gonadotropin inducible transcription repressor","A","G","N>N",36,"N>N","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr19%3A41822249-41822269"]
["CHORI518018C01TF",732,19,58263871,-1,"ZNF160","NM_198893","zinc finger protein 160","G","A","Q>Q",50,"Q>Q","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr19%3A58263861-58263881"]
["CHORI518019A07TR",687,20,25007381,-1,"VSX1","NM_199425","visual system homeobox 1 protein isoform b","A","T","P>P",52.2,"P>P","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr20%3A25007371-25007391"]
["CHORI520R14N06TR",691,20,25223621,1,"C20orf22","NM_015600","hypothetical protein LOC26090","C","T","S>S",50,"S>S","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr20%3A25223611-25223631"]
["CHORI518006D18TR",719,20,51625919,1,"ZNF217","NM_006526","zinc finger protein 217","C","G","Q>E",55,"Q>E","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr20%3A51625909-51625929"]
["IGBR01J22TR",273,"X",13405025,-1,"EGFL6","NM_015507","epidermal growth factor-like protein 6 (precursor)","A","C","L>F",31.8,"L>F","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chrX%3A13405015-13405035"]
["PM1014L08TF",356,"X",133910713,-1,"AL117556","BC000393","DKFZP564B147 protein","C","A","T>T",32.3,"T>T","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chrX%3A133910703-133910723"]
["2B421020C12TR",649,"X",152804364,1,"IRAK1","NM_001569","interleukin-1 receptor-associated kinase 1","A","G","F>F",30.2,"F>F","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chrX%3A152804354-152804374"]

{"sheet":"Table S14","index":9,"n_rows":32,"n_cols":6,"rows_kept":32,"merged":[[0,0,0,2]],"flags":["formulas_cached_only"]}
["amplicon mutation density"]
[]
[null,null,"novel","density",null,"ratio"]
["amplicon","span (Mb)","snps","(snps/Mb)","bes","(snps/bes)"]
[]
["mcf7",{"v":2800,"d":"2,800"},{"v":1440,"d":"1,440"},{"v":0.514285714285714,"d":"0.51"},{"v":18460,"d":"18,460"},{"v":0.0780065005417118,"d":"7.80%"}]
["20 44.8 46.4",1.6,10,6.25,73,{"v":0.136986301369863,"d":"13.70%"}]
["3 61.4 65.4",4.00000000000001,18,{"v":4.49999999999999,"d":"4.50"},173,{"v":0.104046242774566,"d":"10.40%"}]
["20 48.4 49.4",1,1,{"v":1,"d":"1.00"},20,{"v":0.05,"d":"5.00%"}]
["1 106.2 108.2 ",2,2,{"v":1,"d":"1.00"},53,{"v":0.0377358490566038,"d":"3.77%"}]
["17 53.8 57.8",4,9,2.25,244,{"v":0.0368852459016393,"d":"3.69%"}]
["20 50.6 56",5.4,2,{"v":0.37037037037037,"d":"0.37"},210,{"v":0.00952380952380952,"d":"0.95%"}]
["1 113.6 116.4",2.8,0,{"v":0,"d":"0.00"},52,{"v":0,"d":"0.00%"}]
[]
[]
["chori_518",{"v":2800,"d":"2,800"},{"v":1330,"d":"1,330"},{"v":0.475,"d":"0.48"},{"v":16566,"d":"16,566"},{"v":0.0802849209223711,"d":"8.03%"}]
["17 43.8 46.4",2.6,6,{"v":2.30769230769231,"d":"2.31"},78,{"v":0.0769230769230769,"d":"7.69%"}]
["17 33.8 35.6",1.8,5,{"v":2.77777777777778,"d":"2.78"},70,{"v":0.0714285714285714,"d":"7.14%"}]
["20 55.4 57",1.6,5,{"v":3.125,"d":"3.13"},75,{"v":0.0666666666666667,"d":"6.67%"}]
["20 49.8 57",7.2,25,{"v":3.47222222222222,"d":"3.47"},474,{"v":0.0527426160337553,"d":"5.27%"}]
["17 54.4 56.4",2,3,{"v":1.5,"d":"1.50"},60,{"v":0.05,"d":"5.00%"}]
["20 49.8 54",4.2,17,{"v":4.04761904761905,"d":"4.05"},356,{"v":0.047752808988764,"d":"4.78%"}]
["17 50 51.8",1.8,3,{"v":1.66666666666667,"d":"1.67"},63,{"v":0.0476190476190476,"d":"4.76%"}]
["20 42.4 43.4",1,1,{"v":1,"d":"1.00"},24,{"v":0.0416666666666667,"d":"4.17%"}]
["20 32.4 33.8",1.4,0,{"v":0,"d":"0.00"},46,{"v":0,"d":"0.00%"}]
[]
[]
["chori_520",{"v":2800,"d":"2,800"},953,{"v":0.340357142857143,"d":"0.34"},{"v":15697,"d":"15,697"},{"v":0.0607122380072625,"d":"6.07%"}]
["8 71.4 82",10.6,26,{"v":2.45283018867925,"d":"2.45"},352,{"v":0.0738636363636364,"d":"7.39%"}]
["8 113 124.8",11.8,39,{"v":3.30508474576271,"d":"3.31"},595,{"v":0.065546218487395,"d":"6.55%"}]
["8 88.4 91.6",3.2,4,1.25,103,{"v":0.0388349514563107,"d":"3.88%"}]
["8 127.6 129.4",1.8,1,{"v":0.555555555555556,"d":"0.56"},62,{"v":0.0161290322580645,"d":"1.61%"}]

{"sheet":"Table S15","index":10,"n_rows":27,"n_cols":15,"rows_kept":27,"flags":["formulas_cached_only"]}
["BES","BES Length","Chrom","Location","Strand","Gene Name","RefSeq ID","Description","Base in BES","Base in Reference","Amino Acid Substition","Min Phred","Amino Acid Substition","Link","Primers"]
["MCF734h03TF (known)",888,1,157829874,1,"BC025732","BC025732","Novel protein","G","T","Q>P",57.8,"Q>P","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr1%3A157829864-157829884","LEFT PRIMER        122   25   58.83   52.00  3.00  0.00 TGACAACAACTGAGGAAGAGCACCC\nRIGHT PRIMER       437   25   59.65   56.00  4.00  2.00 CCAGTCACCATGTGCAAGAGAGGTC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 316, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
["MCF739J09TR (known)",560,3,51953260,1,"PARP3","NM_001003935","poly (ADP-ribose) polymerase family, member 3","G","A","H>R",50.8,"H>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr3%3A51953250-51953270","LEFT PRIMER        186   25   59.14   56.00  4.00  2.00 10.00 GGCCCAGGTGTATGAGGACTACAAC\nRIGHT PRIMER       524   25   59.07   52.00  4.00  2.00 10.00 AGTGGTTGATCTTTGACTGGCCGAC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 339, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 300,14"]
["MCF747o24TR known",760,7,72183400,-1,"TRIM50A","NM_178125","tripartite motif protein 50A","C","T","W>R",51.8,"W>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr7%3A72183390-72183410","LEFT PRIMER         23   24   60.59   58.33  6.00  2.00 10.00 AGATGAGCTCCTGGTCCTTCTCGC\nRIGHT PRIMER       386   25   61.45   56.00  3.00  2.00 10.00 TGAGGTCGGATGCCTGTGTTTCAGC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 364, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
["CHORI520R11D10TF",513,12,131461644,1,"AK092825","AK092825","Hypothetical protein FLJ35506.","A","G","R>C",45.4,"R>C","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr12%3A131461634-131461654","LEFT PRIMER        242   24   63.02   62.50  5.00  0.00 10.00 GTGATGAGCGGGCGTCGTCCAAAG\nRIGHT PRIMER       610   25   62.41   60.00  5.00  0.00 10.00 GTTGGTGACAACTGGACGGTTCCCC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 369, PAIR ANY COMPL: 6.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
["CHORI520R118M23TF",645,19,41822259,1,"GIOT-1","NM_153257","gonadotropin inducible transcription repressor","A","G","N>N",36,"N>N","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr19%3A41822249-41822269","LEFT PRIMER        190   20   59.46   50.00  4.00  2.00 10.00 GCTGTGATCGCTGTCTAAAG\nRIGHT PRIMER       552   27   58.54   29.63  6.00  2.00 10.00 AAAAGTGTAGAAAAATCTTCAGTTACC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 363, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 3.00\nTARGETS (start, len)*: 300,14\n\n"]
["CHORI520R114K12TR",528,17,38250182,1,"AOC2","NM_001158","amine oxidase, copper containing 2 isoform a","G","A","I>V",35,"I>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A38250172-38250192","LEFT PRIMER          6   24   59.99   41.67  7.00  3.00 10.00 CCCTTTCATCTGGTCTAAATGATG\nRIGHT PRIMER       375   20   60.04   50.00  4.00  2.00 10.00 CTGGTCAGCAAAACATAGGC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 370, PAIR ANY COMPL: 3.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
["CHORI520R117B04TR",629,14,"157829874",-1,"AK095276","AK095276","Hypothetical protein FLJ37957","T","C","R>W",43,"R>W","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr14%3A90386005-90386025","LEFT PRIMER        206   26   56.94   50.00  5.00  2.00 10.00 GCTAGATGATGTCCTCAAACCTGACG\nRIGHT PRIMER       532   25   57.19   48.00  4.00  0.00 10.00 TTGTTTGCTCCCTTGTAGAAAGCCC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 327, PAIR ANY COMPL: 5.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 300,14"]
["CHORI518001C08TF",648,15,53440011,1,"CCPG1","NM_020739","cell cycle progression 1","G","A","Y>H",49.7,"Y>H","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr15%3A53440001-53440021","LEFT PRIMER         75   28   55.99   42.86  4.00  2.00 10.00 GGCATCAAATGTTTCCTTAACTGAACCC\nRIGHT PRIMER       349   25   55.06   48.00  5.00  3.00 10.00 GTGGTAGTCAGTTACATGGCAAGTC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 275, PAIR ANY COMPL: 7.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
["CHORI518006D18TR",719,20,51625919,1,"ZNF217","NM_006526","zinc finger protein 217","C","G","Q>E",55,"Q>E","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr20%3A51625909-51625929","LEFT PRIMER         50   23   59.88   43.48  4.00  2.00 10.00 CTCATGCAATACCTTCTAACGTC\nRIGHT PRIMER       405   22   59.38   45.45  5.00  1.00 10.00 CTATTTCTGTAATCGGAGTGCC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 356, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 290,24"]
["CHORI518010M09TF",795,17,73934667,-1,"DNAH17","NM_003727","dynein, axonemal, heavy polypeptide 17","C","G","E>Q",44.6,"E>Q","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A73934657-73934677","LEFT PRIMER         64   22   61.08   50.00  6.00  2.00 10.00 CTGCTAAGGAACGGTCTAGATG\nRIGHT PRIMER       381   23   62.01   43.48  5.00  3.00 10.00 TTTCAACATGGCTGAGATCATGG\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 318, PAIR ANY COMPL: 3.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 300,14\n\n"]
["CHORI518016B20TR",713,4,123549988,-1,"CR936613","CR936613","Hypothetical protein DKFZp781P0474","G","A","D>D",47,"D>D","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr4%3A123549978-123549998","LEFT PRIMER         98   26   60.17   53.85  6.00  0.00 10.00 GCAAGGCCATGTGAATCTTCCTCCAC\nRIGHT PRIMER       416   26   60.07   53.85  4.00  2.00 10.00 TGGGGAAGCAGATCCGGCTGTATATC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 319, PAIR ANY COMPL: 6.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 300,14"]
["CHORI518013A17TF",737,17,33805716,-1,"SOCS7","NM_014598","suppressor of cytokine signaling 7","C","T","K>R",43,"K>R","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr17%3A33805706-33805726","LEFT PRIMER        236   25   60.03   40.00  4.00  2.00 10.00 TCCGAAAGTTCTACTACTATGATCC\nRIGHT PRIMER       561   22   60.55   45.45  3.00  2.00 10.00 CTGTCTGCTTTTCTCCCAAATG\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 326, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 300,14"]
["CHORI518018C01TF",732,19,58263871,-1,"ZNF160","NM_198893","zinc finger protein 160","G","A","Q>Q",50,"Q>Q","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr19%3A58263861-58263881","LEFT PRIMER         37   20   56.68   45.00  3.00  2.00  9.00 GGGTAGTTAGGTTTGAATGC\nRIGHT PRIMER       384   18   55.97   50.00  4.00  0.00  9.75 ACCTTAGAAGTCATCGGG\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 348, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 1.00\nTARGETS (start, len)*: 300,14\n\n"]
["MCF749c19TR",748,1,19811686,1,"LOC255104","NM_181719","hypothetical protein LOC255104","A","C","V>V",31.6,"V>V","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr1%3A19811676-19811696","LEFT PRIMER        193   25   59.99   56.00  4.00  2.00 CCTGACTTCCCCTCTTGCTCAATGC\nRIGHT PRIMER       404   25   59.86   56.00  3.00  2.00 TCATCACTATCTCACCTCCCCAGGC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 212, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
["CHORI520R14N06TR",691,20,25223621,1,"C20orf22","NM_015600","hypothetical protein LOC26090","C","T","S>S",50,"S>S","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr20%3A25223611-25223631","LEFT PRIMER        136   22   60.74   45.45  4.00  2.00 10.00 GACTTTGTAAGGTTTGCAGCTC\nRIGHT PRIMER       527   25   61.16   40.00  4.00  0.00 10.00 TTAAGTCTAACTGGGATTTGCCTAC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 392, PAIR ANY COMPL: 5.00, PAIR 3' COMPL: 3.00\nTARGETS (start, len)*: 300,14"]
["CHORI518019A07TR",687,20,25007381,-1,"VSX1","NM_199425","visual system homeobox 1 protein isoform b","A","T","P>P",52.2,"P>P","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr20%3A25007371-25007391","LEFT PRIMER         54   19   59.08   52.63  5.00  0.00 10.00 GTCTCCTCAGGCATTTGTG\nRIGHT PRIMER       378   22   59.82   45.45  4.00  0.00 10.00 CTTTTCTCCGCTCCAAAGATAC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 325, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 3.00\nTARGETS (start, len)*: 300,14\n\n"]
["CHORI520R110J20TF",675,10,121683236,-1,"SEC23IP","NM_007190","Sec23-interacting protein p125","C","T","T>T",55.5,"T>T","http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=87429801&hgt.in1=1.5x&position=chr10%3A121683226-121683246","LEFT PRIMER         89   23   56.05   52.17  5.00  2.00 10.00 AGGACAGCTCTGAGATTACGCTG\nRIGHT PRIMER       344   21   55.09   52.38  6.00  0.00 10.00 TGATCAATGCTGGGGCTGTTC\nSEQUENCE SIZE: 614\nINCLUDED REGION SIZE: 614\n\nPRODUCT SIZE: 256, PAIR ANY COMPL: 5.00, PAIR 3' COMPL: 2.00\nTARGETS (start, len)*: 300,14"]
[]
["Key:"]
["Dotted","Validated by sequencing"]
["Yellow","in dbSNP127"]
["Purple","Only reference allele detected"]
["Pink","No usable sequence obtained"]
[]
["MCF734h03TF","heterogeneity in the trace file"]
["MCF747o24TR","sequence failed"]