{"text_format":"3","workbook":"xls","n_sheets":1,"sheets":["TableS11"],"not_rendered":{"external_links":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"TableS11","index":0,"n_rows":128,"n_cols":9,"rows_kept":128,"flags":["formulas_cached_only"]}
["Table S11. List of validated variants and their primers and probes."]
["Mate pair"]
["chrom","start","end","size","type","PCR/qPCR","forward_primer","reverse_primer"]
["chr3",3206919,3207649,2393,"ins","PCR","CAAATGCAAGAGGCATTTCT","TGGGGAACTAAGGCTTATTGG"]
["chr5",78461229,78462722,2465,"ins","PCR","TCCTCCCCTAGCTTTGGTCT","ATGATGACAATGGCGGTTTT"]
["chr1",196160273,196161167,437,"del","PCR","GCCCTCTAGGGATGAGAAGAA","CCCACTCCACACCAAGGTAA"]
["chr10",46508167,46508929,409,"del","PCR","CAGCTTGAGCTGAAAGATGC","GGATGGAGTAGGAAGTGAGT"]
["chr10",132048184,132048985,400,"del","PCR","CTGAATCCAAGGCTGTGCTT","TCCCAACCAACCAAACTACC"]
["chr11",60328009,60329299,622,"del","PCR","GGAGAAAGAGCACCTGGAACTA","CTGCAAACAGAGTGGAGTGAAG"]
["chr12",8908157,8909134,1090,"del","PCR","ACATATTGTCCTTGCCTTCTCG","TCTCCTGATCTCTTCAAGTCCA"]
["chr12",27324607,27325754,424,"del","PCR","ACTGGCTGCCATTCAACG","CACCACTGTTGTTGTCATGGA"]
["chr12",45361232,45362078,498,"del","PCR","TAGCCAATTTCATTGCCTTGT","CAAATGTTCAAAATCTGGGTACG"]
["chr12",121576220,121576983,388,"del","PCR","TCCAATCGTTAGGAAGAGCAA","TTTGTACGCTCAATGAGATGCT"]
["chr13",21952874,21953674,383,"del","PCR","GGTGTTTTCTTCTATATGGACAATCA","TGTAGTAACTGGAACTAAGTGAACACA"]
["chr15",51112661,51115499,2452,"del","PCR","TGATTTTGTATCATGATCAGCTTG","AATCATTTGGGCTGGCTCT"]
["chr18",35315498,35316327,395,"del","PCR","CACTTCCTCAGCGTGTGCTA","GATTCTCAGCCTGGTGAAGG"]
["chr18",53097735,53099784,2738,"del","PCR","ATCCAATAAGGTGCCTCTGC","CAAGGGAGATGCCTACAGGA"]
["chr18",66997320,66998367,486,"del","PCR","TCCTCTTCCTAAGGCATATTTCA","GGAAAAGTCTGAGGCTGCAT"]
["chr2",195922788,195923944,516,"del","PCR","TCCACTTCCAACTCTAGCATGA","CGATCAACCAAGCATATAACCA"]
["chr2",239165137,239166987,2355,"del","PCR","GGAACTCAGGCTTTTCAACG","AGGAGATTCAGGCCATTCCT"]
["chr3",96598848,96599246,461,"del","PCR","GATGCGAAAACACCTGCATA","TGAGCAATGGCCTACAGAAA"]
["chr3",101110993,101112696,880,"del","PCR","CCATTTCCATTCAACTGCCTAT","CCAGTCTCCATCTCTTCATCCT"]
["chr3",185359277,185360459,686,"del","PCR","CTCAGCCTTTGAGGTGCTAGTT","ATACTGCAATCCAGGAAGTGGT"]
["chr4",43446460,43447145,446,"del","PCR","GTGGGCTGCTTCTGAACATT","CTTCCTGTGTCCAGCCTGAT"]
["chr4",58581984,58583707,1100,"del","PCR","GGAAATTGCTAGATTGGTGGA","CTTCCGTACAGAGCCCATTT"]
["chr4",128132938,128134943,2433,"del","PCR","TGCCAGCTTACTCACCCTCT","TTCCACCTCCCCCTTCTATT"]
["chr4",133333257,133333943,384,"del","PCR","AGAATGCCCAGGACTGACTT","TTACTAGGCGAGTTCCCCATT"]
["chr4",139185478,139186884,1030,"del","PCR","CCCTCAGGAAGGGAGACATA","GTGCACGTGAAGCAGATTGT"]
["chr4",165860789,165863310,2574,"del","PCR","ATGGTAGGATGCCGTCATTG","CGGAGGACTGTGAATGTTGA"]
["chr4",190809808,190811339,750,"del","PCR","AAGCGTGCAGTCATGGAAGT","CCCACACTTTCCAGCTTGTT"]
["chr5",11391901,11392525,422,"del","PCR","GCATGATTGCCTGTCTCTCA","TGCCTTATTTCCCCATAGCA"]
["chr6",46075421,46076160,462,"del","PCR","TGGGTATTTCAGTTTTGGACCT","AATCAGATGGATACTCCCCTCA"]
["chr6",137354930,137356192,516,"del","PCR","AAGTTGAAGGTGCCCACTGA","GCCATAGACATGCCCTTTGT"]
["chr6",169970843,169971587,374,"del","PCR","GCTGGCCACAAGTATGCAG","CCTGGCCACAATTCTCCAA"]
["chr7",316083,317193,936,"del","PCR","GCAAAGGATGCAGGAGGAG","CAGTGGGTTTGGGAGGTG"]
["chr7",103974488,103975247,370,"del","PCR","TGCATAACTGAGCTGGGAGA","AATTGACTGCAACCTCAAGGA"]
["chr7",157721887,157723436,962,"del","PCR","GGAAACGCTTGGCTAAATGA","GGAGCAGCCAGCACAGGT"]
["chr8",11282662,11284635,2168,"del","PCR","TGCCTTTCACTTTTGCCTCT","ACCCATCCCTGCTTCTCTCT"]
["chr9",109072830,109075329,2627,"del","PCR","TGCTCAGACTGCACTTCCAA","GCATTTCAGCATCCCACAAT"]
["chr9",130450741,130454363,2694,"del","PCR","ACGGGAGACAGACCTGAATG","AGAAGCATTGCCCTTTGAGA"]
["chr16",67273862,67278219,3242,"del","qPCR","TGGACAATGGTGAGAGCATC","AAATAGCCCTCCTCGACACA"]
["chr6",160413658,160419699,6250,"del","qPCR","GGAGATGTCAGGAGTGTGTAAGG","AGGACGCTACCAAAGAGCTTC"]
["chr9",27179804,27186618,3036,"del","qPCR","GATGTGGCACCAGGAGAATTA","TCTGAAACAGAATCCTCTGCAA"]
[]
["Split read"]
["chrom","start","end","size","type","PCR/qPCR","forward_primer","reverse_primer"]
["chr11",6368510,6368510,13,"ins","PCR","CCGAGAGATCAGCTGTCAGA","TGATGGCGGTGAATAGACCT"]
["chr11",22171452,22171458,24,"ins","PCR","GCCTGGAGAAGTACTGGGAGA","CGCCAACACTTCCAGGAGAT"]
["chr12",1515635,1515635,262,"ins","PCR","GGTATATGCTGGGACGAGGA","CCTTTTTAAGAATAACAAAATGCAA"]
["chr13",46191128,46191128,70,"ins","PCR","CCAAGGAGAAGTTGAGAGCTACA","GCTCAGTCTGTTTGGAGAACG"]
["chr14",73332432,73332432,30,"ins","PCR","GTCCATAAGGGGCTGCAGAT","GCTCTTTGCAACCAACTCAG"]
["chr15",99543140,99543140,80,"ins","PCR","GTGTGGAATGGGAGATGGAG","GGCAAAGATTCCATCCAGAA"]
["chr16",61621368,61621368,56,"ins","PCR","TAAACCCTATGAACGCTGAGG","ACTATAAGGCCGGACAGAAGAA"]
["chr16",87005900,87005900,99,"ins","PCR","GAAGAGACGAAACCCTGATGTT","GAGACAGAGGCGAGACCAAC"]
["chr17",18795453,18795453,39,"ins","PCR","ATCTGCACTGAATCCTACTCTGC","CAATATCTGTCACACACCAAGGA"]
["chr17",46020716,46020718,111,"ins","PCR","ACACGTTGTGTATCCAGTCCAC","AACATGGACCGCACAGGTAT"]
["chr17",78490010,78490010,124,"ins","PCR","GCAGTGAGACATGATGACCAG","GATCCCAGCAGTGAAGATGAC"]
["chr18",61768283,61768283,72,"ins","PCR","TGAGCTTACAAATTGCCACAA","CACCAAAGAAAGAGATGACTTGA"]
["chr18",72923639,72923639,144,"ins","PCR","ATAGCCAGGACCCAGTGAGAT","CTCTATCCCGAAGCAGAATAGC"]
["chr2",78818917,78818917,315,"ins","PCR","CTGCAAGGGAAAGATGAGCTA","CATCCAAACATAACATCCATACAAG"]
["chr2",240757503,240757503,84,"ins","PCR","CAGCAGAAGCTGACCCTGT","GGTCATTGCTGTGCCCTACT"]
["chr20",62179973,62179973,104,"ins","PCR","AGAGACAGTGCTGGAGTTCTGC","TCGGTCTCCTCATCTACTTGCT"]
["chr3",52841692,52841692,135,"ins","PCR","GGAGGAGGCAGTGTGAACAA","GTCTCAGGGACCACCTCTCCT"]
["chr3",139048074,139048074,306,"ins","PCR","ATCTCCACCCTCAAGCTCTTC","AGGGCAGAAATACTCAGTCCAG"]
["chr5",5984072,5984072,148,"ins","PCR","CAGGTGGTCAGGAATCATGTG","GTGAGTTCTGGAATGGAGTCCT"]
["chr5",16769612,16769612,310,"ins","PCR","GAACATTACCGAGCCTTCCATA","ACGTCTTCCTGGGCTCTTCT"]
["chr5",79986487,79986487,18,"ins","PCR","AAGCCTGAAATCCACCTCCT","CTTCCCACCTTCCCCTTCT"]
["chr6",16435893,16435893,12,"ins","PCR","CCTCCCGAGGGACAAAGT","CGTGCAGTACGCTCACCTG"]
["chr9",72273848,72273848,101,"ins","PCR","TGTGTTGGCACCCATTATTTAC","CACAGGCCCATTAGATGTAGC"]
["chr9",89672635,89672635,289,"ins","PCR","TGCATCGACACTGAGAAATACA","CTGTGATGACTTTGGAAGCACT"]
["chrX",110008550,110008550,75,"ins","PCR","AGGGATTTGCTGGTCAATGT","TGCTCACTCAATTCTCATTTCC"]
["chr1",230489745,230490072,328,"del","PCR","CAAGCTGGTGATCTCTCACTGT","CAAGTGCAGCCTGTCCTCTT"]
["chr1",244723725,244723789,65,"del","PCR","CCAATGACTTCACAGAGCAGTAG","ACGTTGTTGACCGATTAAAGG"]
["chr10",63413623,63413800,178,"del","PCR","CTGACCTGCGTATGAAGCACT","AAACGTAAAGCACATCCCAGAG"]
["chr11",80825778,80825891,114,"del","PCR","GCTTGTCTCCTTGCTCAACAG","GTGCCATTGCTCTGAATGACTA"]
["chr13",81787199,81787541,343,"del","PCR","CCGTACCGTATGACTAAGAACCA","CGCAAGACACAGGCTATCATTA"]
["chr15",88121138,88121149,12,"del","PCR","AGAGCCTGACCAAGATCGAG","AAGGGCCTCCACACATACCT"]
["chr17",27633422,27634030,609,"del","PCR","ATTTTGTTCCTGGGCATCAG","TGGAGATGCAGCTGTGAGTT"]
["chr17",69685307,69685401,95,"del","PCR","GACAGTGTGTGCCTGCATGT","GACGGACACAACAGCATACG"]
["chr18",10452407,10452654,251,"del","PCR","TTGCTAAACACTGGGATGATTG","GGAACAGCTCCCAACAAACTAC"]
["chr2",216866591,216866971,381,"del","PCR","TGCTTCCGTCTTCATGGAAT","GGAGAACTGAGAGCAGGTCAG"]
["chr20",62322579,62322659,81,"del","PCR","AACTGTGGTCTGGGAAGCAG","CGGATAATTGGACCTCGTTG"]
["chr21",17379379,17379451,73,"del","PCR","CCCTGAGTATTAAAGGCAAATCC","AATAACAACACCAGTGACCCAAG"]
["chr21",46355933,46355994,62,"del","PCR","CCCGCTTCCTTGAAGACTG","TCAGGAGGGACTGCTGTTG"]
["chr3",121376675,121377134,460,"del","PCR","GCTCTCAGCTCACCATCCTACT","CCTGCTGGACCCTGTTAAAGA"]
["chr3",193338785,193339122,338,"del","PCR","TCCAGGTCTTGGTTGACTTACA","TATACCACTGAGGAGGCAACAA"]
["chr4",36146313,36146645,333,"del","PCR","AACAATTTGGTCTTTGGTCCTG","TCTCTGGCCTTAGTGTCAGCTT"]
["chr4",139185661,139186667,1007,"del","PCR","GTATGCCTGGATTCTTTCAAGTG","GGTTGGCTGTAAGTTTGGTAGTG"]
["chr5",2004012,2004454,443,"del","PCR","GCGTAGTCTCTACCCTCACACC","GCAGACAATGGACAATGCAC"]
["chr5",122302244,122302566,323,"del","PCR","TTCCAGGATTCTCTCTTCTCTCAG","GTTGATGTGGCAGCAGCAGT"]
["chr6",109535615,109536423,811,"del","PCR","CAGGTTTAGAACTCAAGAATTTGG","AAATCACAGCACAAGGTCTCA"]
["chr7",28180827,28181190,364,"del","PCR","TGTCACCTACGGGAAGAATTG","GACTGGGAAAGTGGTGTCAAA"]
["chr7",30502113,30502440,328,"del","PCR","CACTGCATTCCACAGAGACATT","TTGTAGCTCACTTGATGATGGTG"]
["chr9",103483792,103484557,766,"del","PCR","CCTTTGTCTGTGAATTTGTTCC","GTGTTGAACTATGGTCGGGTAG"]
["chrX",66681884,66681928,45,"del","PCR","GGATGGAAGTGCAGTTAGGG","GCTGCTGTTGCTGAAGGAGT"]
[]
["Agilent custom 244k"]
["Celera_scaffold","start","end","size","type","PCR/qPCR","forward_primer","reverse_primer","PCR_product_size"]
["GA_x5YUV32UWVA",{"v":15545,"d":"15,545"},{"v":16821,"d":"16,821"},{"v":1277,"d":"1,277"},"dup","qPCR","CTGAGGTTCAGCGAGGTTCT","AAGTCACTGCTACCACGAAGGT",114]
["GA_x5YUV32V00B",{"v":2293,"d":"2,293"},{"v":3591,"d":"3,591"},{"v":1299,"d":"1,299"},"dup","qPCR","GCTCACTGGCCTGATTACTGAT","CAACTTCAGAACTGGTAGAGAATG",119]
["GA_x5YUV32V15N",381,{"v":2638,"d":"2,638"},{"v":2258,"d":"2,258"},"del","qPCR","GAGGCAGAAGAACAGGACAGAC","CTGAGAGTCCAGAAGCAGCTC",129]
["GA_x5YUV32V1HL",307,{"v":1654,"d":"1,654"},{"v":1348,"d":"1,348"},"dup","qPCR","GGCGAGTATGTATGTGCAGTTG","ATTGGTCAGTATCCATCAACATT",112]
["GA_x5YUV32V2AG",{"v":9803,"d":"9,803"},{"v":18539,"d":"18,539"},{"v":8737,"d":"8,737"},"dup","qPCR","TGCACTGTAGTAAGGCAAGGAC","TTGATGCCAAGTAGTATTGAGTGTC",98]
["GA_x5YUV32VQPK",{"v":7692,"d":"7,692"},{"v":14813,"d":"14,813"},{"v":7122,"d":"7,122"},"dup","qPCR","TTGGAGCTGAGAACACAGGTAA","TGGTAGTCAGTCAAGGTCATGG",123]
["GA_x5YUV32VS0N",371,{"v":3047,"d":"3,047"},{"v":2677,"d":"2,677"},"dup","qPCR","GAACTCAACTCTCTGCACCTGA","CTCTGTCACTCCAGCCTCATCT",135]
["GA_x5YUV32VTY6",{"v":13803851,"d":"13,803,851"},{"v":13808084,"d":"13,808,084"},{"v":4234,"d":"4,234"},"dup","qPCR","AATGAAGCCAGAGTATGCAAGG","TCAAGGTTAGCTCATGGTCACT",125]
["GA_x5YUV32W3JR",{"v":1511235,"d":"1,511,235"},{"v":1513331,"d":"1,513,331"},{"v":2097,"d":"2,097"},"dup","qPCR","TGGTGGGTCTTGGACTCTTACT","AGAACTCAGAGGCAGCTTTCAT",125]
["GA_x5YUV32W46Y",{"v":33940348,"d":"33,940,348"},{"v":33947171,"d":"33,947,171"},{"v":6824,"d":"6,824"},"dup","qPCR","CAGAGGCTATCTGCTCCTTGTA","TGAATGCAGGAGTGATGAAGAG",112]
["GA_x5YUV32W7K2",{"v":46804628,"d":"46,804,628"},{"v":46805061,"d":"46,805,061"},434,"del","qPCR","TCACCTCGATCTAACATCTGGA","GTCACTGAATTGCATCGTGATT",99]
[]
["NimbleGen 42M"]
["chrom","start","end","size","type","PCR/qPCR","forward primer","reverse primer"]
["chr2",178552127,178556191,4065,"del","qPCR","ATGGAACTTAATGCCCAAACAC","TTTAGGTTGTACCCATGATTGC"]
["chr17",49208550,49214575,6026,"del","qPCR","AATATCAGCCTAGTTTGTCTTCCAG","GGATGGTCAGTAATCCATACACAA"]
["chr15",22971787,22981757,9971,"del","qPCR","AAGGGCTTCCTTCAACTCAAT","GACAGAGAGCACCCTCATAACA"]
["chr4",9801723,9814213,12491,"del","qPCR","AAGTGAGGGCTCCATCTCATAA","CTAAGATCGCTGACAATGATTCC"]
["chr13",56651124,56686891,35768,"del","qPCR","ACTTTATGGGCAGTAGCACGAC","GCCAGGCAATTAAATCTCACTC"]
["chr2",88913483,88942451,28969,"dup","qPCR","CCAATGTCCAGGCATCATTC","AGAGACAGCAGCTTGGCATACT"]
["chr3",163994833,164109038,114206,"dup","qPCR","ATTCCCAGGTCTTAGCCTTCTC","TAAGCCTTTCATCTTCCTTCCA"]
[]
["Agilent 24M"]
["chrom","start","end","size","type","PCR/qPCR","forward primer","reverse primer"]
["chr8",39351157,39505456,154300,"del","qPCR","CCACTGGACACTCACAGCTT","TGTGCCTGGCTAACACATTC"]
["chr3",163995557,164109021,113465,"dup","qPCR","ATTCCCAGGTCTTAGCCTTCTC","TAAGCCTTTCATCTTCCTTCCA"]
[]
["Mate pair"]
["chrom","start","end","size","type","FISH","probes"]
["chr16",21501943,22620002,1118060,"inv","FISH","G248P81317B4, G248P89030H10, G248P85584B2, G248P8661A9"]