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["Table S16. List of HuRef gains that overlap with exons of RefSeq genes."]
["chrom","start","end","size","type","method","gene"]
["chr7",1495507,1495507,51,1,"  assembly comparison","INTS1|GeneID=26173"]
["chr7",1753497,1753497,6,1,"  assembly comparison","ELFN1|GeneID=392617"]
["chr7",2533502,2533502,6,1,"  assembly comparison","LFNG|GeneID=3955"]
["chr7",2617303,2617303,20,1,"  assembly comparison","IQCE|GeneID=23288"]
["chr7",2734886,2734886,2,1,"  assembly comparison","GNA12|GeneID=2768"]
["chr7",3979616,3984015,2778,1,"  mate pair","SDK1|GeneID=221935"]
["chr7",4272730,4272730,1,1,"  assembly comparison","SDK1|GeneID=221935"]
["chr7",4775613,4775613,1,1,"  assembly comparison","FOXK1|GeneID=221937"]
["chr7",4867991,4867991,24,1,"  assembly comparison","PAPOLB|GeneID=56903"]
["chr7",4868015,4868015,24,1,"  split read","PAPOLB|GeneID=56903"]
["chr7",5313034,5313034,1,1,"  assembly comparison","TNRC18|GeneID=84629"]
["chr7",5313373,5313373,1,1,"  assembly comparison","TNRC18|GeneID=84629"]
["chr7",5627347,5627347,1,1,"  assembly comparison","RNF216|GeneID=54476"]
["chr7",6030534,6030534,3,1,"  assembly comparison","EIF2AK1|GeneID=27102"]
["chr7",6160040,6160040,1,1,"  assembly comparison","USP42|GeneID=84132"]
["chr7",6408681,6408681,1,1,"  assembly comparison","RAC1|GeneID=5879"]
["chr7",6696389,6696389,4,1,"  assembly comparison","ZNF12|GeneID=7559"]
["chr7",8119385,8119385,1,1,"  assembly comparison","ICA1|GeneID=3382"]
["chr7",9640454,9640454,1,1,"  assembly comparison","PER4|GeneID=168741"]
["chr7",11380776,11380776,4,1,"  assembly comparison","THSD7A|GeneID=221981"]
["chr7",12238898,12238898,4,1,"  assembly comparison","TMEM106B|GeneID=54664"]
["chr7",12239389,12239389,3,1,"  assembly comparison","TMEM106B|GeneID=54664"]
["chr7",12240943,12240943,1,1,"  assembly comparison","TMEM106B|GeneID=54664"]
["chr7",12242153,12242153,5,1,"  assembly comparison","TMEM106B|GeneID=54664"]
["chr7",12243276,12243276,3,1,"  assembly comparison","TMEM106B|GeneID=54664"]
["chr7",12696464,12696464,1,1,"  assembly comparison","ARL4A|GeneID=10124"]
["chr7",12696788,12696788,1,1,"  assembly comparison","ARL4A|GeneID=10124"]
["chr7",14151626,14151626,1,1,"  assembly comparison","DGKB|GeneID=1607"]
["chr7",14182466,14182466,2,1,"  assembly comparison","DGKB|GeneID=1607"]
["chr7",14182876,14182876,5,1,"  assembly comparison","DGKB|GeneID=1607"]
["chr7",15692651,15692651,3,1,"  assembly comparison","MEOX2|GeneID=4223"]
["chr7",16759946,16759946,3,1,"  assembly comparison","TSPAN13|GeneID=27075"]
["chr7",16790132,16790132,1,1,"  assembly comparison","TSPAN13|GeneID=27075"]
["chr7",17352034,17352034,1,1,"  assembly comparison","AHR|GeneID=196"]
["chr7",19122008,19122008,1,1,"  assembly comparison","TWIST1|GeneID=7291"]
["chr7",19151276,19151276,3,1,"  assembly comparison","FERD3L|GeneID=222894"]
["chr7",20788446,20788446,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20788723,20788723,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20788831,20788831,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20788987,20788987,2,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789309,20789309,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789327,20789327,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789345,20789345,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789569,20789569,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789762,20789762,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789805,20789805,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789816,20789816,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789987,20789987,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20789997,20789997,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20790022,20790022,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",20790076,20790076,1,1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",22124486,22124486,1,1,"  assembly comparison","RAPGEF5|GeneID=9771"]
["chr7",22947454,22947454,2,1,"  assembly comparison","FAM126A|GeneID=84668"]
["chr7",23838553,23838553,4,1,"  assembly comparison","STK31|GeneID=56164"]
["chr7",25128180,25128180,1,1,"  assembly comparison","CYCS|GeneID=54205"]
["chr7",26674825,26674825,1,1,"  assembly comparison","SKAP2|GeneID=8935"]
["chr7",27113660,27113660,1,1,"  assembly comparison","HOXA3|GeneID=3200"]
["chr7",27114025,27114025,1,1,"  assembly comparison","HOXA3|GeneID=3200"]
["chr7",27114132,27114132,1,1,"  assembly comparison","HOXA3|GeneID=3200"]
["chr7",27147670,27147670,1,1,"  assembly comparison","HOXA5|GeneID=3202"]
["chr7",27176954,27176954,1,1,"  assembly comparison","HOXA10|GeneID=3206"]
["chr7",27177116,27177116,1,1,"  assembly comparison","HOXA10|GeneID=3206"]
["chr7",27203084,27203084,1,1,"  assembly comparison","HOXA13|GeneID=3209"]
["chr7",28826569,28826569,1,1,"  assembly comparison","CREB5|GeneID=9586"]
["chr7",28827301,28827301,4,1,"  assembly comparison","CREB5|GeneID=9586"]
["chr7",28964122,28964122,1,1,"  assembly comparison","KIAA0644|GeneID=9865"]
["chr7",29519758,29519758,2,1,"  assembly comparison","CHN2|GeneID=1124"]
["chr7",30762562,30762562,4,1,"  assembly comparison","INMT|GeneID=11185"]
["chr7",32735242,32735242,8,1,"  assembly comparison","LOC441208|GeneID=441208"]
["chr7",33012228,33012228,1,1,"  assembly comparison","FKBP9|GeneID=11328"]
["chr7",34159547,34159547,2,1,"  assembly comparison","BMPER|GeneID=168667"]
["chr7",35701118,35701118,1,1,"  assembly comparison","HERPUD2|GeneID=64224"]
["chr7",35701168,35701168,1,1,"  assembly comparison","HERPUD2|GeneID=64224"]
["chr7",36159364,36159364,5,1,"  assembly comparison","EEPD1|GeneID=80820"]
["chr7",36519257,36519257,1,1,"  assembly comparison","AOAH|GeneID=313"]
["chr7",36519317,36519317,1,1,"  assembly comparison","AOAH|GeneID=313"]
["chr7",43631877,43631877,14,1,"  assembly comparison","STK17A|GeneID=9263"]
["chr7",43631900,43631900,14,1,"  split read","STK17A|GeneID=9263"]
["chr7",44808299,44808299,3,1,"  assembly comparison","PPIA|GeneID=5478"]
["chr7",44886336,44886336,4,1,"  assembly comparison","PURB|GeneID=5814"]
["chr7",45115362,45115362,1,1,"  assembly comparison","TBRG4|GeneID=9238"]
["chr7",47667005,47667005,1,1,"  assembly comparison","C7orf65|GeneID=401335"]
["chr7",47971040,47971040,1,1,"  assembly comparison","HUS1|GeneID=3364"]
["chr7",48934757,48934757,1,1,"  assembly comparison","CDC14C|GeneID=168448"]
["chr7",48936392,48936392,1,1,"  assembly comparison","CDC14C|GeneID=168448"]
["chr7",50437108,50437108,1,1,"  assembly comparison","IKZF1|GeneID=10320"]
["chr7",51052624,51052624,1,1,"  assembly comparison","COBL|GeneID=23242"]
["chr7",56046776,56046776,1,1,"  assembly comparison","PSPH|GeneID=5723"]
["chr7",56115470,56115470,1,1,"  assembly comparison","SUMF2|GeneID=25870"]
["chr7",63808473,63808473,3,1,"  assembly comparison","ZNF107|GeneID=51427"]
["chr7",64074269,64074269,1,1,"  assembly comparison","ZNF117|GeneID=51351"]
["chr7",64088363,64088363,1,1,"  assembly comparison","ZNF117|GeneID=51351"]
["chr7",65479979,65479979,2,1,"  assembly comparison","LOC285908|GeneID=285908"]
["chr7",65911812,65911812,2,1,"  assembly comparison","RABGEF1|GeneID=27342"]
["chr7",69895065,69895065,3,1,"  assembly comparison","AUTS2|GeneID=26053"]
["chr7",70890128,70890128,1,1,"  assembly comparison","CALN1|GeneID=83698"]
["chr7",72051660,72051660,3,1,"  assembly comparison","POM121|GeneID=9883"]
["chr7",72492778,72492778,1,1,"  assembly comparison","BAZ1B|GeneID=9031"]
["chr7",72750422,72750422,2,1,"  assembly comparison","WBSCR22|GeneID=114049"]
["chr7",73944644,73944644,1,1,"  assembly comparison","STAG3L2|GeneID=442582"]
["chr7",75752872,75752872,1,1,"  assembly comparison","FLJ37078|GeneID=222183"]
["chr7",75796079,75796079,21,1,"  assembly comparison","YWHAG|GeneID=7532"]
["chr7",76662404,76662404,1,1,"  assembly comparison","FGL2|GeneID=10875"]
["chr7",79686312,79686312,8,1,"  assembly comparison","GNAI1|GeneID=2770"]
["chr7",80146106,80146106,1,1,"  assembly comparison","CD36|GeneID=948"]
["chr7",80211391,80211391,5,1,"  assembly comparison","SEMA3C|GeneID=10512"]
["chr7",82289348,82289348,1,1,"  assembly comparison","PCLO|GeneID=27445"]
["chr7",82419429,82419429,3,1,"  assembly comparison","PCLO|GeneID=27445"]
["chr7",82622815,82622815,30,1,"  assembly comparison","PCLO|GeneID=27445"]
["chr7",87751416,87751416,1,1,"  assembly comparison","STEAP4|GeneID=79689"]
["chr7",89701817,89701817,1,1,"  assembly comparison","STEAP2|GeneID=261729"]
["chr7",89702877,89702877,1,1,"  assembly comparison","STEAP2|GeneID=261729"]
["chr7",89743829,89746487,2561,1,"  mate pair","C7orf63|GeneID=79846"]
["chr7",90676657,90676657,2,1,"  assembly comparison","PFTK1|GeneID=5218"]
["chr7",90677600,90677600,3,1,"  assembly comparison","PFTK1|GeneID=5218"]
["chr7",91490117,91490117,3,1,"  assembly comparison","AKAP9|GeneID=10142"]
["chr7",91924411,91924411,1,1,"  assembly comparison","GATAD1|GeneID=57798"]
["chr7",92073899,92073899,1,1,"  assembly comparison","CDK6|GeneID=1021"]
["chr7",93898295,93898295,7,1,"  assembly comparison","COL1A2|GeneID=1278"]
["chr7",94136177,94136177,4,1,"  assembly comparison","PEG10|GeneID=23089"]
["chr7",95063726,95063726,2,1,"  assembly comparison","PDK4|GeneID=5166"]
["chr7",100109408,100109408,3,1,"  assembly comparison","GNB2|GeneID=2783"]
["chr7",100120675,100120675,1,1,"  assembly comparison","GIGYF1|GeneID=64599"]
["chr7",100158247,100158247,1,1,"  assembly comparison","EPO|GeneID=2056"]
["chr7",100288344,100288344,1,1,"  assembly comparison","SLC12A9|GeneID=56996"]
["chr7",100310869,100310869,1,1,"  assembly comparison","ARS2|GeneID=51593"]
["chr7",100568448,100568448,9,1,"  assembly comparison","SERPINE1|GeneID=5054"]
["chr7",100601162,100601162,12,1,"  assembly comparison","C7orf52|GeneID=375607"]
["chr7",100743445,100743445,3,1,"  assembly comparison","RABL5|GeneID=64792"]
["chr7",101878668,101878668,2,1,"  assembly comparison","ORAI2|GeneID=80228"]
["chr7",102527276,102527276,40,1,"  assembly comparison","ARMC10|GeneID=83787/NAPEPLD|GeneID=222236"]
["chr7",102529690,102529690,1,1,"  assembly comparison","NAPEPLD|GeneID=222236"]
["chr7",103417066,103417066,1,1,"  assembly comparison","RELN|GeneID=5649"]
["chr7",105033168,105033168,1,1,"  assembly comparison","ATXN7L1|GeneID=222255"]
["chr7",106334529,106334529,1,1,"  assembly comparison","PIK3CG|GeneID=5294"]
["chr7",107188588,107188588,5,1,"  assembly comparison","CBLL1|GeneID=79872"]
["chr7",110552237,110552237,1,1,"  assembly comparison","LRRN3|GeneID=54674"]
["chr7",114443978,114443978,4,1,"  assembly comparison","MDFIC|GeneID=29969"]
["chr7",115935643,115935643,1,1,"  assembly comparison","CAV2|GeneID=858"]
["chr7",115986904,115986904,1,1,"  assembly comparison","CAV1|GeneID=857"]
["chr7",116704481,116704481,1,1,"  assembly comparison","WNT2|GeneID=7472"]
["chr7",117094522,117094522,1,1,"  assembly comparison","CFTR|GeneID=1080"]
["chr7",122541731,122541731,1,1,"  assembly comparison","SLC13A1|GeneID=6561"]
["chr7",123458795,123458795,1,1,"  assembly comparison","tcag7.977|GeneID=730130"]
["chr7",127037885,127037885,4,1,"  assembly comparison","PAX4|GeneID=5078"]
["chr7",127684874,127684874,3,1,"  assembly comparison","LEP|GeneID=3952"]
["chr7",127929637,127929637,1,1,"  assembly comparison","METTL2B|GeneID=55798"]
["chr7",128079058,128079058,15,1,"  assembly comparison","tcag7.907|GeneID=402483"]
["chr7",128086223,128086223,1,1,"  assembly comparison","tcag7.907|GeneID=402483"]
["chr7",128320752,128320752,1,1,"  assembly comparison","CRIM2|GeneID=375616"]
["chr7",128555283,128555283,1,1,"  assembly comparison","LOC407835|GeneID=407835"]
["chr7",128571955,128571955,214,1,"  assembly comparison","TSPAN33|GeneID=340348"]
["chr7",129592794,129592794,1,1,"  assembly comparison","TMEM209|GeneID=84928"]
["chr7",129751012,129751012,2,1,"  assembly comparison","CPA4|GeneID=51200"]
["chr7",129751140,129751140,3,1,"  assembly comparison","CPA4|GeneID=51200"]
["chr7",129824583,129824583,1,1,"  assembly comparison","TSGA14|GeneID=95681"]
["chr7",130068039,130068039,1,1,"  assembly comparison","KLF14|GeneID=136259"]
["chr7",130828052,130828052,2,1,"  assembly comparison","MKLN1|GeneID=4289"]
["chr7",131460305,131460305,3,1,"  assembly comparison","PLXNA4|GeneID=91584"]
["chr7",131463308,131463308,2,1,"  assembly comparison","PLXNA4|GeneID=91584"]
["chr7",133399874,133399874,1,1,"  assembly comparison","EXOC4|GeneID=60412"]
["chr7",134470795,134470795,1,1,"  assembly comparison","AGBL3|GeneID=340351"]
["chr7",136204033,136204033,2,1,"  assembly comparison","CHRM2|GeneID=1129"]
["chr7",136286335,136286335,1,1,"  assembly comparison","CHRM2|GeneID=1129"]
["chr7",137210992,137210992,1,1,"  assembly comparison","CREB3L2|GeneID=64764"]
["chr7",137211617,137211617,2,1,"  assembly comparison","CREB3L2|GeneID=64764"]
["chr7",138170502,138170502,1,1,"  assembly comparison","KIAA1549|GeneID=57670"]
["chr7",138419096,138419096,1,1,"  assembly comparison","ZC3HAV1|GeneID=56829"]
["chr7",138638087,138638087,2,1,"  assembly comparison","UBN2|GeneID=254048"]
["chr7",138908125,138908125,6,1,"  assembly comparison","HIPK2|GeneID=28996"]
["chr7",139524553,139524553,8,1,"  assembly comparison","LOC100134229|GeneID=100134229"]
["chr7",140042944,140042944,1,1,"  assembly comparison","LOC100134713|GeneID=100134713"]
["chr7",142978617,142983469,4853,1,"  NimbleGen 42M","LOC441294|GeneID=441294"]
["chr7",143402232,143402805,574,1,"  Agilent 24M","OR2A25|GeneID=392138"]
["chr7",147743816,147743816,1,1,"  assembly comparison","CNTNAP2|GeneID=26047"]
["chr7",147746571,147746571,2,1,"  assembly comparison","CNTNAP2|GeneID=26047"]
["chr7",147747625,147747625,1,1,"  assembly comparison","CNTNAP2|GeneID=26047"]
["chr7",148160724,148161385,8169,1,"  mate pair","EZH2|GeneID=2146"]
["chr7",148552803,148552803,1,1,"  assembly comparison","ZNF282|GeneID=8427"]
["chr7",148567714,148567714,3,1,"  assembly comparison","ZNF212|GeneID=7988"]
["chr7",148583202,148583202,1,1,"  assembly comparison","ZNF212|GeneID=7988"]
["chr7",148611006,148611006,6,1,"  assembly comparison","ZNF783|GeneID=155060"]
["chr7",148612093,148612093,15,1,"  assembly comparison","ZNF783|GeneID=155060"]
["chr7",149057240,149057240,1,1,"  assembly comparison","KRBA1|GeneID=84626"]
["chr7",149107603,149107603,1,1,"  assembly comparison","SSPO|GeneID=23145"]
["chr7",149137145,149137145,1,1,"  assembly comparison","SSPO|GeneID=23145"]
["chr7",149849051,149849051,2,1,"  assembly comparison","GIMAP7|GeneID=168537"]
["chr7",149955472,149955472,1,1,"  assembly comparison","GIMAP6|GeneID=474344"]
["chr7",150515217,150515217,2,1,"  assembly comparison","ASB10|GeneID=136371"]
["chr7",154507593,154507593,3,1,"  assembly comparison","HTR5A|GeneID=3361"]
["chr7",154949475,154949475,2,1,"  assembly comparison","EN2|GeneID=2020"]
["chr7",154987450,154987450,1,1,"  assembly comparison","CNPY1|GeneID=285888"]
["chr7",154987460,154987460,1,1,"  assembly comparison","CNPY1|GeneID=285888"]
["chr7",155266251,155266251,11,1,"  assembly comparison","RBM33|GeneID=155435"]
["chr7",156456364,156456364,1,1,"  assembly comparison","NOM1|GeneID=64434"]
["chr7",156457031,156457031,1,1,"  assembly comparison","NOM1|GeneID=64434"]
["chr7",156458560,156458560,2,1,"  assembly comparison","NOM1|GeneID=64434"]
["chr7",156490810,156490810,1,1,"  assembly comparison","MNX1|GeneID=3110"]
["chr7",158397228,158404405,10830,1,"  mate pair","WDR60|GeneID=55112"]
["chr7",158515814,158515814,2,1,"  assembly comparison","VIPR2|GeneID=7434"]
["chr20",257734,257734,5,1,"  assembly comparison","SOX12|GeneID=6666"]
["chr20",1395563,1395563,15,1,"  assembly comparison","NSFL1C|GeneID=55968"]
["chr20",1395578,1395578,15,1,"  split read","NSFL1C|GeneID=55968"]
["chr20",1508951,1541893,32943,1,"  Affymetrix 6.0","SIRPB1|GeneID=10326"]
["chr20",1843116,1844411,1296,1,"  NimbleGen 42M","SIRPA|GeneID=140885"]
["chr20",1866657,1866657,6,1,"  assembly comparison","SIRPA|GeneID=140885"]
["chr20",2074052,2074052,8,1,"  assembly comparison","STK35|GeneID=140901"]
["chr20",2076706,2076706,9,1,"  assembly comparison","STK35|GeneID=140901"]
["chr20",2392412,2392412,1,1,"  assembly comparison","SNRPB|GeneID=6628"]
["chr20",2974345,2974345,5,1,"  assembly comparison","GNRH2|GeneID=2797"]
["chr20",3037600,3037600,1,1,"  assembly comparison","UBOX5|GeneID=22888"]
["chr20",3575927,3575927,5,1,"  assembly comparison","ATRN|GeneID=8455"]
["chr20",3579415,3579415,4,1,"  assembly comparison","ATRN|GeneID=8455"]
["chr20",3615749,3615749,1,1,"  assembly comparison","SIGLEC1|GeneID=6614"]
["chr20",4709885,4709885,1,1,"  assembly comparison","RASSF2|GeneID=9770"]
["chr20",5055632,5055632,5,1,"  assembly comparison","CDS2|GeneID=8760"]
["chr20",5923169,5923169,2,1,"  assembly comparison","MCM8|GeneID=84515"]
["chr20",5923398,5923398,1,1,"  assembly comparison","MCM8|GeneID=84515"]
["chr20",5967907,5967907,16,1,"  assembly comparison","CRLS1|GeneID=54675"]
["chr20",6004043,6004043,1,1,"  assembly comparison","FERMT1|GeneID=55612"]
["chr20",10567289,10567289,1,1,"  assembly comparison","JAG1|GeneID=182"]
["chr20",13840705,13844408,2917,1,"  mate pair","SEL1L2|GeneID=80343"]
["chr20",17411008,17411008,2,1,"  assembly comparison","PCSK2|GeneID=5126"]
["chr20",17919055,17919055,4,1,"  assembly comparison","C20orf72|GeneID=92667"]
["chr20",18417597,18417597,2,1,"  assembly comparison","RBBP9|GeneID=10741"]
["chr20",18417615,18417615,2,1,"  assembly comparison","RBBP9|GeneID=10741"]
["chr20",18489702,18489702,1,1,"  assembly comparison","SEC23B|GeneID=10483"]
["chr20",19930029,19930029,1,1,"  assembly comparison","RIN2|GeneID=54453"]
["chr20",19963197,19963197,4,1,"  assembly comparison","CRNKL1|GeneID=51340"]
["chr20",21054716,21054716,1,1,"  assembly comparison","NCRNA00153|GeneID=55857"]
["chr20",21134163,21134163,1,1,"  assembly comparison","NCRNA00153|GeneID=55857"]
["chr20",21318334,21318334,2,1,"  assembly comparison","XRN2|GeneID=22803"]
["chr20",21439904,21439904,19,1,"  assembly comparison","NKX2-2|GeneID=4821"]
["chr20",23304793,23304793,1,1,"  assembly comparison","NAPB|GeneID=63908"]
["chr20",25226231,25226231,1,1,"  assembly comparison","PYGB|GeneID=5834"]
["chr20",25319384,25319384,7,1,"  assembly comparison","ABHD12|GeneID=26090"]
["chr20",25374693,25374693,1,1,"  assembly comparison","GINS1|GeneID=9837"]
["chr20",25381461,25381461,1,1,"  assembly comparison","RP4-691N24.1|GeneID=22981"]
["chr20",25405049,25405049,6,1,"  assembly comparison","RP4-691N24.1|GeneID=22981"]
["chr20",25701208,25701208,2,1,"  assembly comparison","FAM182B|GeneID=728882"]
["chr20",25709510,25785259,75750,1,"  NimbleGen 42M","FAM182B|GeneID=728882"]
["chr20",30385122,30385122,1,1,"  assembly comparison","KIF3B|GeneID=9371"]
["chr20",30496426,30496426,3,1,"  assembly comparison","C20orf112|GeneID=140688"]
["chr20",30498893,30498893,5,1,"  assembly comparison","C20orf112|GeneID=140688"]
["chr20",32128526,32128526,3,1,"  assembly comparison","RALY|GeneID=22913"]
["chr20",32561386,32561386,1,1,"  assembly comparison","ITCH|GeneID=83737"]
["chr20",34589972,34589972,1,1,"  assembly comparison","DLGAP4|GeneID=22839"]
["chr20",35241207,35241207,29,1,"  assembly comparison","C20orf132|GeneID=140699"]
["chr20",35579809,35579809,2,1,"  assembly comparison","BLCAP|GeneID=10904"]
["chr20",36639789,36639789,2,1,"  assembly comparison","KIAA1219|GeneID=57148"]
["chr20",40139879,40139879,4,1,"  assembly comparison","PTPRT|GeneID=11122"]
["chr20",41976366,41980253,3594,1,"  mate pair","TOX2|GeneID=84969"]
["chr20",42173879,42173879,1,1,"  assembly comparison","JPH2|GeneID=57158"]
["chr20",43139453,43139453,2,1,"  assembly comparison","STK4|GeneID=6789"]
["chr20",43388437,43388437,4,1,"  assembly comparison","SDC4|GeneID=6385"]
["chr20",43946409,43946409,1,1,"  assembly comparison","ZSWIM1|GeneID=90204"]
["chr20",44620143,44620143,4,1,"  assembly comparison","SLC13A3|GeneID=64849"]
["chr20",45719566,45719566,4,1,"  assembly comparison","SULF2|GeneID=55959"]
["chr20",47085937,47085937,1,1,"  assembly comparison","ARFGEF2|GeneID=10564"]
["chr20",47555085,47555085,2,1,"  assembly comparison","PTGIS|GeneID=5740"]
["chr20",47683387,47683387,5,1,"  assembly comparison","B4GALT5|GeneID=9334"]
["chr20",47685395,47685395,1,1,"  assembly comparison","B4GALT5|GeneID=9334"]
["chr20",48131290,48131290,1,1,"  assembly comparison","TMEM189-UBE2V1|GeneID=387522/UBE2V1|GeneID=7335"]
["chr20",48803020,48803020,2,1,"  assembly comparison","PARD6B|GeneID=84612"]
["chr20",49648160,49648160,1,1,"  assembly comparison","ATP9A|GeneID=10079"]
["chr20",50138160,50142572,2802,1,"  mate pair","ZFP64|GeneID=55734"]
["chr20",51925191,51925191,1,1,"  assembly comparison","SUMO1P1|GeneID=391257"]
["chr20",51993910,51993910,1,1,"  assembly comparison","BCAS1|GeneID=8537"]
["chr20",51994261,51994261,2,1,"  assembly comparison","BCAS1|GeneID=8537"]
["chr20",52525876,52525876,1,1,"  assembly comparison","DOK5|GeneID=55816"]
["chr20",57015680,57015680,6,1,"  assembly comparison","CTSZ|GeneID=1522"]
["chr20",57043359,57043359,1,1,"  assembly comparison","SLMO2|GeneID=51012"]
["chr20",57263217,57263217,2,1,"  assembly comparison","ZNF831|GeneID=128611"]
["chr20",60303420,60303420,1,1,"  assembly comparison","OSBPL2|GeneID=9885"]
["chr20",60472069,60472069,1,1,"  assembly comparison","GATA5|GeneID=140628"]
["chr20",60472294,60472294,30,1,"  assembly comparison","GATA5|GeneID=140628"]
["chr20",60558416,60558416,32,1,"  assembly comparison","C20orf166|GeneID=128826"]
["chr20",60991169,60991169,1,1,"  assembly comparison","DIDO1|GeneID=11083"]
["chr20",61013279,61013279,1,1,"  assembly comparison","DIDO1|GeneID=11083"]
["chr20",61203429,61207070,3062,1,"  mate pair","HAR1A|GeneID=768096/HAR1B|GeneID=768097"]
["chr20",61203576,61203576,2,1,"  assembly comparison","HAR1A|GeneID=768096"]
["chr20",61427935,61427935,1,1,"  assembly comparison","COL20A1|GeneID=57642"]
["chr20",61547110,61552364,2530,1,"  mate pair","KCNQ2|GeneID=3785"]
["chr20",61742366,61742366,24,1,"  split read","STMN3|GeneID=50861"]
["chr20",61963466,61963466,1,1,"  assembly comparison","C20orf135|GeneID=140701"]
["chr20",62367072,62367072,1,1,"  assembly comparison","PCMTD2|GeneID=55251"]
["chr14",19736021,19736021,1,1,"  assembly comparison","OR11G2|GeneID=390439"]
["chr14",20922091,20922091,1,1,"  assembly comparison","SUPT16H|GeneID=11198"]
["chr14",20923860,20923860,2,1,"  assembly comparison","CHD8|GeneID=57680"]
["chr14",21035806,21035806,1,1,"  assembly comparison","TOX4|GeneID=9878"]
["chr14",21059315,21059315,15,1,"  split read","SALL2|GeneID=6297"]
["chr14",22441107,22441107,3,1,"  assembly comparison","RBM23|GeneID=55147"]
["chr14",22511385,22511385,4,1,"  assembly comparison","JUB|GeneID=84962"]
["chr14",22638625,22638625,1,1,"  assembly comparison","C14orf119|GeneID=55017"]
["chr14",22722207,22722207,2,1,"  assembly comparison","SLC7A8|GeneID=23428"]
["chr14",23716253,23716253,3,1,"  assembly comparison","REC8|GeneID=9985"]
["chr14",23729248,23729248,2,1,"  assembly comparison","TM9SF1|GeneID=10548"]
["chr14",23839715,23839715,6,1,"  assembly comparison","C14orf21|GeneID=161424"]
["chr14",24351147,24351147,1,1,"  assembly comparison","STXBP6|GeneID=29091"]
["chr14",24351509,24351509,1,1,"  assembly comparison","STXBP6|GeneID=29091"]
["chr14",26136575,26136575,1,1,"  assembly comparison","NOVA1|GeneID=4857"]
["chr14",28307805,28307805,1,1,"  assembly comparison","FOXG1|GeneID=2290"]
["chr14",28331062,28331062,3,1,"  assembly comparison","C14orf23|GeneID=387978"]
["chr14",30433865,30433865,1,1,"  assembly comparison","STRN3|GeneID=29966"]
["chr14",31399259,31399259,4,1,"  assembly comparison","NUBPL|GeneID=80224"]
["chr14",33342667,33342667,2,1,"  assembly comparison","NPAS3|GeneID=64067"]
["chr14",33463494,33463494,2,1,"  assembly comparison","EGLN3|GeneID=112399"]
["chr14",33463920,33463920,3,1,"  assembly comparison","EGLN3|GeneID=112399"]
["chr14",34101687,34101687,1,1,"  assembly comparison","SNX6|GeneID=58533"]
["chr14",34250428,34250428,1,1,"  assembly comparison","CFL2|GeneID=1073"]
["chr14",34553571,34554627,6784,1,"  mate pair","SRP54|GeneID=6729"]
["chr14",36056023,36056023,1,1,"  assembly comparison","NKX2-1|GeneID=7080"]
["chr14",38600929,38602977,3520,1,"  mate pair","SEC23A|GeneID=10484"]
["chr14",38688880,38688880,1,1,"  assembly comparison","TRAPPC6B|GeneID=122553"]
["chr14",38889659,38889659,4,1,"  assembly comparison","CTAGE5|GeneID=4253"]
["chr14",44043938,44043938,36,1,"  assembly comparison","FSCB|GeneID=84075"]
["chr14",44742753,44742753,1,1,"  assembly comparison","C14orf106|GeneID=55320"]
["chr14",46380570,46380570,1,1,"  assembly comparison","MDGA2|GeneID=161357"]
["chr14",46380580,46380580,1,1,"  assembly comparison","MDGA2|GeneID=161357"]
["chr14",49654110,49654110,4,1,"  assembly comparison","SOS2|GeneID=6655"]
["chr14",52308787,52308787,2,1,"  assembly comparison","STYX|GeneID=6815"]
["chr14",52309824,52309824,1,1,"  assembly comparison","STYX|GeneID=6815"]
["chr14",52689244,52689244,6,1,"  assembly comparison","DDHD1|GeneID=80821"]
["chr14",53486351,53486351,2,1,"  assembly comparison","BMP4|GeneID=652"]
["chr14",55833946,55833946,1,1,"  assembly comparison","PELI2|GeneID=57161"]
["chr14",55834808,55834808,1,1,"  assembly comparison","PELI2|GeneID=57161"]
["chr14",55836372,55836372,1,1,"  assembly comparison","PELI2|GeneID=57161"]
["chr14",56184040,56184040,1,1,"  assembly comparison","C14orf101|GeneID=54916"]
["chr14",56184393,56184393,1,1,"  assembly comparison","C14orf101|GeneID=54916"]
["chr14",57771401,57771401,3,1,"  assembly comparison","ACTR10|GeneID=55860"]
["chr14",60247498,60247498,6,1,"  assembly comparison","SIX4|GeneID=51804"]
["chr14",60248270,60248270,1,1,"  assembly comparison","SIX4|GeneID=51804"]
["chr14",60815484,60815484,12,1,"  assembly comparison","TMEM30B|GeneID=161291"]
["chr14",61283686,61283686,1,1,"  assembly comparison","HIF1A|GeneID=3091"]
["chr14",62854161,62854161,1,1,"  assembly comparison","GPHB5|GeneID=122876"]
["chr14",62911140,62911140,4,1,"  assembly comparison","PPP2R5E|GeneID=5529"]
["chr14",64060466,64060466,1,1,"  assembly comparison","ZBTB1|GeneID=22890"]
["chr14",64079287,64079287,1,1,"  assembly comparison","HSPA2|GeneID=3306"]
["chr14",64285404,64285404,2,1,"  assembly comparison","SPTB|GeneID=6710"]
["chr14",67213862,67213862,2,1,"  assembly comparison","RDH11|GeneID=51109"]
["chr14",68324413,68324413,1,1,"  assembly comparison","ZFP36L1|GeneID=677"]
["chr14",68515633,68515633,5,1,"  assembly comparison","ACTN1|GeneID=87"]
["chr14",69315659,69315659,1,1,"  assembly comparison","SLC10A1|GeneID=6554"]
["chr14",69315718,69315718,1,1,"  assembly comparison","SLC10A1|GeneID=6554"]
["chr14",69904031,69904031,1,1,"  assembly comparison","SYNJ2BP|GeneID=55333"]
["chr14",70264608,70264608,2,1,"  assembly comparison","MAP3K9|GeneID=4293"]
["chr14",70651428,70651428,1,1,"  assembly comparison","PCNX|GeneID=22990"]
["chr14",72101671,72101671,3,1,"  assembly comparison","RGS6|GeneID=9628"]
["chr14",73254394,73254394,1,1,"  assembly comparison","C14orf43|GeneID=91748"]
["chr14",73736711,73736711,310,1,"  assembly comparison","LIN52|GeneID=91750"]
["chr14",74478764,74478764,1,1,"  assembly comparison","PGF|GeneID=5228"]
["chr14",74668852,74668852,1,1,"  assembly comparison","TMED10|GeneID=10972"]
["chr14",75197229,75197229,1,1,"  assembly comparison","C14orf1|GeneID=11161"]
["chr14",75406375,75406375,1,1,"  assembly comparison","BCYRN1|GeneID=618"]
["chr14",75738661,75738661,2,1,"  assembly comparison","C14orf118|GeneID=55668"]
["chr14",76388512,76388512,1,1,"  assembly comparison","C14orf166B|GeneID=145497"]
["chr14",76560944,76560944,2,1,"  assembly comparison","C14orf4|GeneID=64207"]
["chr14",76563567,76563567,3,1,"  assembly comparison","C14orf4|GeneID=64207"]
["chr14",76668913,76668913,10,1,"  assembly comparison","ZDHHC22|GeneID=283576"]
["chr14",77011621,77011621,11,1,"  assembly comparison","ISM2|GeneID=145501"]
["chr14",77043706,77043706,2,1,"  assembly comparison","SPTLC2|GeneID=9517"]
["chr14",80033136,80033136,2,1,"  assembly comparison","C14orf145|GeneID=145508"]
["chr14",80681603,80681603,1,1,"  assembly comparison","TSHR|GeneID=7253"]
["chr14",87718134,87718134,2,1,"  assembly comparison","KCNK10|GeneID=54207"]
["chr14",88149090,88149090,1,1,"  assembly comparison","ZC3H14|GeneID=79882"]
["chr14",88697258,88697258,1,1,"  assembly comparison","FOXN3|GeneID=1112"]
["chr14",88697693,88697693,12,1,"  split read","FOXN3|GeneID=1112"]
["chr14",89112647,89112647,1,1,"  assembly comparison","PRO1768|GeneID=29018"]
["chr14",89941682,89941682,1,1,"  assembly comparison","CALM1|GeneID=801"]
["chr14",91109069,91109069,2,1,"  assembly comparison","PP8961|GeneID=650662"]
["chr14",91109117,91109117,1,1,"  assembly comparison","PP8961|GeneID=650662"]
["chr14",91687317,91691355,3360,1,"  mate pair","CPSF2|GeneID=53981"]
["chr14",92375922,92375922,1,1,"  assembly comparison","GOLGA5|GeneID=9950"]
["chr14",92777422,92777422,1,1,"  assembly comparison","BTBD7|GeneID=55727"]
["chr14",92869362,92869362,22,1,"  assembly comparison","KIAA1409|GeneID=57578"]
["chr14",93470595,93470595,1,1,"  assembly comparison","ASB2|GeneID=51676"]
["chr14",93584868,93584868,1,1,"  assembly comparison","OTUB2|GeneID=78990"]
["chr14",93587288,93587288,5,1,"  assembly comparison","DDX24|GeneID=57062"]
["chr14",94626273,94626273,1,1,"  assembly comparison","DICER1|GeneID=23405"]
["chr14",95779113,95779113,1,1,"  assembly comparison","BDKRB2|GeneID=624"]
["chr14",95819395,95819395,1,1,"  assembly comparison","ATG2B|GeneID=55102"]
["chr14",98709667,98709667,1,1,"  assembly comparison","BCL11B|GeneID=64919"]
["chr14",98807412,98807412,9,1,"  assembly comparison","BCL11B|GeneID=64919"]
["chr14",100420427,100420427,3,1,"  assembly comparison","RTL1|GeneID=388015"]
["chr14",101884541,101884541,3,1,"  assembly comparison","CINP|GeneID=51550"]
["chr14",102263379,102263379,1,1,"  assembly comparison","RCOR1|GeneID=23186"]
["chr14",102646564,102646564,1,1,"  assembly comparison","C14orf73|GeneID=91828"]
["chr14",102874516,102874516,1,1,"  assembly comparison","EIF5|GeneID=1983"]
["chr14",102877954,102877954,4,1,"  assembly comparison","EIF5|GeneID=1983"]
["chr14",104126180,104126180,9,1,"  assembly comparison","C14orf180|GeneID=400258"]
["chr14",104340464,104340464,2,1,"  assembly comparison","ZBTB42|GeneID=100128927"]
["chr14",104341556,104341556,2,1,"  assembly comparison","ZBTB42|GeneID=100128927"]
["chr14",104433677,104433677,1,1,"  assembly comparison","KIAA0284|GeneID=283638"]
["chr14",104547167,104547167,1,1,"  assembly comparison","CDCA4|GeneID=55038"]
["chr14",104933900,104933900,2,1,"  assembly comparison","PACS2|GeneID=23241"]
["chr14",105014652,105016706,2913,1,"  mate pair","CRIP2|GeneID=1397"]
["chr14",105289618,105930091,640474,1,"  Affymetrix 6.0","KIAA0125|GeneID=9834/ADAM6|GeneID=8755"]
["chr14",105455506,105455506,1,1,"  assembly comparison","KIAA0125|GeneID=9834"]
["chr14",105508081,105508081,38,1,"  assembly comparison","ADAM6|GeneID=8755"]
["chr22",15918355,15918355,1,1,"  assembly comparison","CECR7|GeneID=100130418"]
["chr22",15978159,15978159,4,1,"  assembly comparison","CECR6|GeneID=27439"]
["chr22",16020409,16020409,3,1,"  assembly comparison","CECR4|GeneID=100130717"]
["chr22",16591020,16591020,1,1,"  assembly comparison","BCL2L13|GeneID=23786"]
["chr22",18214215,18214215,1,1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18215150,18215150,8,1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18215348,18215348,1,1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18216855,18216855,1,1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18216909,18216909,1,1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18336269,18336269,1,1,"  assembly comparison","COMT|GeneID=1312"]
["chr22",19109975,19109975,1,1,"  assembly comparison","SCARF2|GeneID=91179"]
["chr22",19634626,19634626,1,1,"  assembly comparison","CRKL|GeneID=1399"]
["chr22",19692522,19692522,1,1,"  assembly comparison","MGC16703|GeneID=113691"]
["chr22",20172648,20172648,1,1,"  assembly comparison","PI4KAP2|GeneID=375133"]
["chr22",20382521,20382521,1,1,"  assembly comparison","YPEL1|GeneID=29799"]
["chr22",20444392,20444392,3,1,"  assembly comparison","MAPK1|GeneID=5594"]
["chr22",20444403,20444403,1,1,"  assembly comparison","MAPK1|GeneID=5594"]
["chr22",21042265,21293055,250791,1,"  NimbleGen 42M","ZNF280B|GeneID=140883/ZNF280A|GeneID=129025/PRAME|GeneID=23532"]
["chr22",21170127,21170127,4,1,"  assembly comparison","ZNF280B|GeneID=140883"]
["chr22",21171833,21171833,2,1,"  assembly comparison","ZNF280B|GeneID=140883"]
["chr22",21229663,21229663,1,1,"  assembly comparison","PRAME|GeneID=23532"]
["chr22",21731878,21731878,1,1,"  assembly comparison","RTDR1|GeneID=27156"]
["chr22",21796386,21796386,1,1,"  assembly comparison","GNAZ|GeneID=2781"]
["chr22",21835115,21835115,1,1,"  assembly comparison","RAB36|GeneID=9609"]
["chr22",21940584,21941325,742,1,"  Agilent 24M","BCR|GeneID=613"]
["chr22",22063859,22063859,1,1,"  assembly comparison","ZDHHC8P|GeneID=150244"]
["chr22",22557723,22557723,1,1,"  assembly comparison","SLC2A11|GeneID=66035"]
["chr22",22670684,22734058,63375,1,"  NimbleGen 42M","GSTTP1|GeneID=25774/LOC391322|GeneID=391322/GSTT1|GeneID=2952/GSTTP2|GeneID=653399"]
["chr22",22945642,22945642,3,1,"  assembly comparison","GGT5|GeneID=2687"]
["chr22",22990700,22990700,1,1,"  assembly comparison","POM121L9P|GeneID=29774"]
["chr22",22990792,22990792,1,1,"  assembly comparison","POM121L9P|GeneID=29774"]
["chr22",23167915,23167915,1,1,"  assembly comparison","ADORA2A|GeneID=135"]
["chr22",23267613,23267613,1,1,"  assembly comparison","C22orf13|GeneID=83606"]
["chr22",23491762,23491762,1,1,"  assembly comparison","TOP1P2|GeneID=7152"]
["chr22",24452924,24452924,2,1,"  assembly comparison","ADRBK2|GeneID=157"]
["chr22",25169376,25169376,1,1,"  assembly comparison","ASPHD2|GeneID=57168"]
["chr22",25169603,25169603,1,1,"  assembly comparison","ASPHD2|GeneID=57168"]
["chr22",25170206,25170206,2,1,"  assembly comparison","ASPHD2|GeneID=57168"]
["chr22",25392700,25392700,1,1,"  assembly comparison","MIAT|GeneID=440823"]
["chr22",25396019,25396019,1,1,"  assembly comparison","MIAT|GeneID=440823"]
["chr22",25396565,25396565,1,1,"  assembly comparison","MIAT|GeneID=440823"]
["chr22",26476769,26476769,1,1,"  assembly comparison","MN1|GeneID=4330"]
["chr22",26524962,26524962,3,1,"  assembly comparison","MN1|GeneID=4330"]
["chr22",26578770,26578770,1,1,"  assembly comparison","PITPNB|GeneID=23760"]
["chr22",27781810,27781810,5,1,"  assembly comparison","ZNRF3|GeneID=84133"]
["chr22",27782106,27782106,1,1,"  assembly comparison","ZNRF3|GeneID=84133"]
["chr22",27783442,27783442,1,1,"  assembly comparison","ZNRF3|GeneID=84133"]
["chr22",28163942,28163942,1,1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28164168,28164168,1,1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28165633,28165633,1,1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28167199,28167199,1,1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28215566,28215566,18,1,"  split read","NEFH|GeneID=4744"]
["chr22",28215593,28215593,18,1,"  assembly comparison","NEFH|GeneID=4744"]
["chr22",28422813,28422813,1,1,"  assembly comparison","NF2|GeneID=4771"]
["chr22",28972448,28973283,836,1,"  Agilent 24M","LIF|GeneID=3976"]
["chr22",29149616,29149616,1,1,"  assembly comparison","SEC14L2|GeneID=23541"]
["chr22",29215243,29215243,8,1,"  assembly comparison","SEC14L4|GeneID=284904"]
["chr22",29215728,29215728,1,1,"  assembly comparison","SEC14L4|GeneID=284904"]
["chr22",29701927,29701927,1,1,"  assembly comparison","TUG1|GeneID=55000"]
["chr22",30007797,30007797,2,1,"  assembly comparison","PIK3IP1|GeneID=113791"]
["chr22",30411436,30411436,1,1,"  assembly comparison","C22orf30|GeneID=253143"]
["chr22",30683405,30683405,1,1,"  assembly comparison","YWHAH|GeneID=7533"]
["chr22",30765952,30765952,1,1,"  assembly comparison","LOC402057|GeneID=402057"]
["chr22",31587163,31587163,1,1,"  assembly comparison","TIMP3|GeneID=7078"]
["chr22",34277492,34277938,447,1,"  Agilent 24M","RASD2|GeneID=23551"]
["chr22",34917793,34917793,2,1,"  assembly comparison","APOL4|GeneID=80832"]
["chr22",34952663,34952663,1,1,"  assembly comparison","APOL2|GeneID=23780"]
["chr22",34953307,34953307,4,1,"  assembly comparison","APOL2|GeneID=23780"]
["chr22",35290175,35290175,1,1,"  assembly comparison","CACNG2|GeneID=10369"]
["chr22",35906304,35906304,1,1,"  assembly comparison","C1QTNF6|GeneID=114904"]
["chr22",35932532,35932532,1,1,"  assembly comparison","SSTR3|GeneID=6753"]
["chr22",36499958,36499958,6,1,"  assembly comparison","TRIOBP|GeneID=11078"]
["chr22",36533293,36533293,2,1,"  assembly comparison","H1F0|GeneID=3005"]
["chr22",36810964,36810964,1,1,"  assembly comparison","BAIAP2L2|GeneID=80115"]
["chr22",37017290,37017290,1,1,"  assembly comparison","CSNK1E|GeneID=1454"]
["chr22",37017315,37017315,2,1,"  assembly comparison","CSNK1E|GeneID=1454"]
["chr22",37017846,37017846,3,1,"  assembly comparison","CSNK1E|GeneID=1454"]
["chr22",37211781,37211781,1,1,"  assembly comparison","DDX17|GeneID=10521"]
["chr22",37456962,37456962,4,1,"  assembly comparison","GTPBP1|GeneID=9567"]
["chr22",37457001,37457001,2,1,"  assembly comparison","GTPBP1|GeneID=9567"]
["chr22",37747076,37747076,1,1,"  assembly comparison","APOBEC3D|GeneID=140564"]
["chr22",37758540,37758540,3,1,"  assembly comparison","APOBEC3D|GeneID=140564"]
["chr22",37759009,37759009,1,1,"  assembly comparison","APOBEC3D|GeneID=140564"]
["chr22",37781042,37781042,1,1,"  assembly comparison","APOBEC3F|GeneID=200316"]
["chr22",37781335,37781335,1,1,"  assembly comparison","APOBEC3F|GeneID=200316"]
["chr22",37781374,37781374,2,1,"  assembly comparison","APOBEC3F|GeneID=200316"]
["chr22",38242112,38242112,1,1,"  assembly comparison","SMCR7L|GeneID=54471"]
["chr22",38246572,38246572,1,1,"  assembly comparison","ATF4|GeneID=468"]
["chr22",39061722,39061722,7,1,"  assembly comparison","TNRC6B|GeneID=23112"]
["chr22",39552049,39552049,2,1,"  assembly comparison","ST13|GeneID=6767"]
["chr22",39905498,39905498,1,1,"  assembly comparison","EP300|GeneID=2033"]
["chr22",40253133,40253133,1,1,"  assembly comparison","POLR3H|GeneID=171568"]
["chr22",40270385,40270392,14,1,"  split read","POLR3H|GeneID=171568"]
["chr22",40270392,40270392,7,1,"  assembly comparison","POLR3H|GeneID=171568"]
["chr22",40420978,40420978,2,1,"  assembly comparison","CTA-216E10.6|GeneID=79640"]
["chr22",40650982,40650982,1,1,"  assembly comparison","TNFRSF13C|GeneID=115650"]
["chr22",41227038,41282629,55592,1,"  NimbleGen 42M","SERHL|GeneID=94009/RRP7A|GeneID=27341/SERHL2|GeneID=253190"]
["chr22",41301915,41301915,3,1,"  assembly comparison","RRP7B|GeneID=91695"]
["chr22",41418309,41418309,1,1,"  assembly comparison","A4GALT|GeneID=53947"]
["chr22",42552903,42552903,4,1,"  assembly comparison","SULT4A1|GeneID=25830"]
["chr22",42674287,42674287,2,1,"  assembly comparison","PNPLA3|GeneID=80339"]
["chr22",42674584,42674584,2,1,"  assembly comparison","PNPLA3|GeneID=80339"]
["chr22",42974067,42974067,33,1,"  assembly comparison","KIAA1644|GeneID=85352"]
["chr22",43656449,43656449,1,1,"  assembly comparison","PHF21B|GeneID=112885"]
["chr22",43960410,43960410,2,1,"  assembly comparison","NUP50|GeneID=10762"]
["chr22",43968636,43968636,1,1,"  assembly comparison","C22orf9|GeneID=23313"]
["chr22",43970222,43970222,1,1,"  assembly comparison","C22orf9|GeneID=23313"]
["chr22",44101501,44104133,2512,1,"  mate pair","FAM118A|GeneID=55007"]
["chr22",44188943,44188943,1,1,"  assembly comparison","RIBC2|GeneID=26150"]
["chr22",45017292,45017292,2,1,"  assembly comparison","PPARA|GeneID=5465"]
["chr22",45459280,45459280,1,1,"  assembly comparison","CERK|GeneID=64781"]
["chr22",45459637,45459637,1,1,"  assembly comparison","CERK|GeneID=64781"]
["chr22",48866379,48866379,1,1,"  assembly comparison","MLC1|GeneID=23209"]
["chr22",49025165,49025165,1,1,"  assembly comparison","TUBGCP6|GeneID=85378"]
["chr22",49229926,49229926,1,1,"  assembly comparison","SAPS2|GeneID=9701"]
["chr22",49389379,49389379,1,1,"  assembly comparison","MAPK8IP2|GeneID=23542"]
["chr19",326718,330405,2686,1,"  mate pair","THEG|GeneID=51298"]
["chr19",356963,356963,5,1,"  assembly comparison","FAM148C|GeneID=126567"]
["chr19",452718,452718,24,1,"  assembly comparison","MADCAM1|GeneID=8174"]
["chr19",452739,452739,48,1,"  assembly comparison","MADCAM1|GeneID=8174"]
["chr19",634385,634385,4,1,"  assembly comparison","FSTL3|GeneID=10272"]
["chr19",822774,825006,2967,1,"  mate pair","MED16|GeneID=10025"]
["chr19",923247,923247,2,1,"  assembly comparison","ARID3A|GeneID=1820"]
["chr19",988982,988982,1,1,"  assembly comparison","CNN2|GeneID=1265"]
["chr19",999199,1005414,2458,1,"  mate pair","ABCA7|GeneID=10347"]
["chr19",1038705,1038705,1,1,"  assembly comparison","POLR2E|GeneID=5434"]
["chr19",1486193,1486193,3,1,"  assembly comparison","PLK5P|GeneID=126520"]
["chr19",1505927,1505927,1,1,"  assembly comparison","MEX3D|GeneID=399664"]
["chr19",1876913,1876913,2,1,"  assembly comparison","SCAMP4|GeneID=113178"]
["chr19",1905126,1905126,1,1,"  assembly comparison","C19orf34|GeneID=255193"]
["chr19",1990434,1990434,1,1,"  assembly comparison","MKNK2|GeneID=2872"]
["chr19",2291156,2291156,1,1,"  assembly comparison","SPPL2B|GeneID=56928"]
["chr19",2462564,2462564,1,1,"  assembly comparison","GNG7|GeneID=2788"]
["chr19",2464915,2464915,1,1,"  assembly comparison","GNG7|GeneID=2788"]
["chr19",2667651,2667651,1,1,"  assembly comparison","DIRAS1|GeneID=148252"]
["chr19",2786485,2786485,2,1,"  assembly comparison","ZNF554|GeneID=115196"]
["chr19",3486268,3486268,1,1,"  assembly comparison","FZR1|GeneID=51343"]
["chr19",3582632,3582632,2,1,"  assembly comparison","PIP5K1C|GeneID=23396"]
["chr19",4462282,4462282,396,1,"  assembly comparison","KIAA1881|GeneID=729359"]
["chr19",4493795,4493795,1,1,"  assembly comparison","SEMA6B|GeneID=10501"]
["chr19",4604809,4604809,2,1,"  assembly comparison","TNFAIP8L1|GeneID=126282"]
["chr19",4745948,4745948,8,1,"  assembly comparison","FEM1A|GeneID=55527"]
["chr19",4746405,4746405,3,1,"  assembly comparison","FEM1A|GeneID=55527"]
["chr19",4905680,4905680,1,1,"  assembly comparison","UHRF1|GeneID=29128"]
["chr19",5095421,5095421,225,1,"  assembly comparison","JMJD2B|GeneID=23030"]
["chr19",5103127,5103127,2,1,"  assembly comparison","JMJD2B|GeneID=23030"]
["chr19",5573906,5573906,1,1,"  assembly comparison","SAFB2|GeneID=9667"]
["chr19",5643017,5643017,28,1,"  assembly comparison","LONP1|GeneID=9361"]
["chr19",5861017,5861017,1,1,"  assembly comparison","VMAC|GeneID=400673"]
["chr19",5944781,5944781,4,1,"  assembly comparison","RFX2|GeneID=5990"]
["chr19",5945825,5945825,3,1,"  assembly comparison","RFX2|GeneID=5990"]
["chr19",6163378,6163378,3,1,"  assembly comparison","MLLT1|GeneID=4298"]
["chr19",6364153,6364153,2,1,"  assembly comparison","KHSRP|GeneID=8570"]
["chr19",6364850,6364850,1,1,"  assembly comparison","KHSRP|GeneID=8570"]
["chr19",7037254,7037254,12,1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7038237,7038237,8,1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7038734,7038734,4,1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7065058,7065058,1,1,"  assembly comparison","INSR|GeneID=3643"]
["chr19",7065930,7065930,1,1,"  assembly comparison","INSR|GeneID=3643"]
["chr19",7669698,7669698,1,1,"  assembly comparison","FCER2|GeneID=2208"]
["chr19",9097705,9097705,5,1,"  assembly comparison","OR7G3|GeneID=390883"]
["chr19",9537396,9537396,5,1,"  assembly comparison","ZNF121|GeneID=7675"]
["chr19",9581871,9586980,3208,1,"  mate pair","ZNF561|GeneID=93134"]
["chr19",9622658,9622658,1,1,"  assembly comparison","ZNF562|GeneID=54811"]
["chr19",9993529,9993529,1,1,"  assembly comparison","RDH8|GeneID=50700"]
["chr19",10230774,10230774,1,1,"  assembly comparison","MRPL4|GeneID=51073"]
["chr19",10258049,10258049,2,1,"  assembly comparison","ICAM1|GeneID=3383"]
["chr19",10525266,10525266,4,1,"  assembly comparison","KRI1|GeneID=65095"]
["chr19",10538321,10538321,1,1,"  assembly comparison","CDKN2D|GeneID=1032"]
["chr19",10544556,10544556,2,1,"  assembly comparison","AP1M2|GeneID=10053"]
["chr19",10624233,10624233,2,1,"  assembly comparison","LOC147727|GeneID=147727"]
["chr19",12435758,12435758,2,1,"  assembly comparison","ZNF709|GeneID=163051"]
["chr19",12672102,12672102,1,1,"  assembly comparison","TNPO2|GeneID=30000"]
["chr19",12946356,12946356,1,1,"  assembly comparison","DAND5|GeneID=199699"]
["chr19",13111644,13111644,1,1,"  assembly comparison","NACC1|GeneID=112939"]
["chr19",13112207,13112207,3,1,"  assembly comparison","NACC1|GeneID=112939"]
["chr19",14121498,14121498,12,1,"  assembly comparison","LPHN1|GeneID=22859"]
["chr19",14121749,14121749,1,1,"  assembly comparison","LPHN1|GeneID=22859"]
["chr19",14121752,14121752,1,1,"  assembly comparison","LPHN1|GeneID=22859"]
["chr19",14913986,14913986,3,1,"  assembly comparison","OR7C2|GeneID=26658"]
["chr19",15086427,15086427,1,1,"  assembly comparison","SYDE1|GeneID=85360"]
["chr19",15591498,15591498,1,1,"  assembly comparison","CYP4F8|GeneID=11283"]
["chr19",15884485,15884485,8,1,"  assembly comparison","CYP4F11|GeneID=57834"]
["chr19",15884572,15884572,16,1,"  assembly comparison","CYP4F11|GeneID=57834"]
["chr19",17258457,17258457,4,1,"  assembly comparison","ANKLE1|GeneID=126549"]
["chr19",17258475,17258475,4,1,"  assembly comparison","ANKLE1|GeneID=126549"]
["chr19",17258521,17258521,14,1,"  assembly comparison","ANKLE1|GeneID=126549"]
["chr19",17575029,17575029,2,1,"  assembly comparison","UNC13A|GeneID=23025"]
["chr19",17797730,17797730,2,1,"  assembly comparison","JAK3|GeneID=3718"]
["chr19",17797910,17797910,3,1,"  assembly comparison","JAK3|GeneID=3718"]
["chr19",17960265,17961550,1286,1,"  Agilent 24M","KCNN1|GeneID=3780"]
["chr19",18121709,18121709,2,1,"  assembly comparison","MAST3|GeneID=23031"]
["chr19",18414584,18414584,4,1,"  assembly comparison","ELL|GeneID=8178"]
["chr19",18414693,18414693,1,1,"  assembly comparison","ELL|GeneID=8178"]
["chr19",18822526,18822526,1,1,"  assembly comparison","UPF1|GeneID=5976"]
["chr19",19478436,19478436,1,1,"  assembly comparison","GATAD2A|GeneID=54815"]
["chr19",19479041,19479041,1,1,"  assembly comparison","GATAD2A|GeneID=54815"]
["chr19",19479077,19479077,1,1,"  assembly comparison","GATAD2A|GeneID=54815"]
["chr19",19651876,19651876,2,1,"  assembly comparison","ZNF101|GeneID=94039"]
["chr19",19976648,19976648,2,1,"  assembly comparison","ZNF682|GeneID=91120"]
["chr19",20595503,20595503,1,1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20595772,20595772,1,1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20597236,20597236,3,1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20598610,20598610,2,1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20619949,20619949,2,1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20636183,20636183,4,1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",21091616,21091616,3,1,"  assembly comparison","ZNF714|GeneID=148206"]
["chr19",21095186,21095186,3,1,"  assembly comparison","ZNF714|GeneID=148206"]
["chr19",21095418,21095418,1,1,"  assembly comparison","ZNF714|GeneID=148206"]
["chr19",21159403,21159403,1,1,"  assembly comparison","ZNF431|GeneID=170959"]
["chr19",21265864,21265864,3,1,"  assembly comparison","ZNF708|GeneID=7562"]
["chr19",21401595,21401595,1,1,"  assembly comparison","ZNF493|GeneID=284443"]
["chr19",21507590,21511483,2474,1,"  mate pair","ZNF429|GeneID=353088"]
["chr19",21700519,21700519,4,1,"  assembly comparison","ZNF100|GeneID=163227"]
["chr19",21700638,21700638,2,1,"  assembly comparison","ZNF100|GeneID=163227"]
["chr19",21700842,21700842,3,1,"  assembly comparison","ZNF100|GeneID=163227"]
["chr19",21727218,21727218,1,1,"  assembly comparison","LOC641367|GeneID=641367"]
["chr19",21943417,21943417,1,1,"  assembly comparison","ZNF208|GeneID=7757"]
["chr19",22155665,22155665,252,1,"  assembly comparison","ZNF676|GeneID=163223"]
["chr19",22640142,22640142,1,1,"  assembly comparison","ZNF492|GeneID=57615"]
["chr19",22640817,22640817,4,1,"  assembly comparison","ZNF492|GeneID=57615"]
["chr19",23716179,23716179,2,1,"  assembly comparison","ZNF681|GeneID=148213"]
["chr19",34882672,34882672,1,1,"  assembly comparison","C19orf12|GeneID=83636"]
["chr19",35191985,35191985,6,1,"  assembly comparison","C19orf2|GeneID=8725"]
["chr19",37567462,37567462,1,1,"  assembly comparison","ZNF507|GeneID=22847"]
["chr19",37859876,37859876,1,1,"  assembly comparison","RGS9BP|GeneID=388531"]
["chr19",37861023,37861023,1,1,"  assembly comparison","RGS9BP|GeneID=388531"]
["chr19",37895149,37895149,2,1,"  assembly comparison","NUDT19|GeneID=390916"]
["chr19",37896150,37896150,3,1,"  assembly comparison","NUDT19|GeneID=390916"]
["chr19",38391507,38391507,1,1,"  assembly comparison","LRP3|GeneID=4037/SLC7A10|GeneID=56301"]
["chr19",38867476,38867476,1,1,"  assembly comparison","CHST8|GeneID=64377"]
["chr19",38979724,38979724,5,1,"  assembly comparison","KCTD15|GeneID=79047"]
["chr19",38996104,38996104,1,1,"  assembly comparison","KCTD15|GeneID=79047"]
["chr19",39410574,39410574,2,1,"  assembly comparison","LSM14A|GeneID=26065"]
["chr19",39411212,39411212,8,1,"  assembly comparison","LSM14A|GeneID=26065"]
["chr19",40183193,40183193,5,1,"  assembly comparison","GRAMD1A|GeneID=57655"]
["chr19",40255998,40255998,6,1,"  assembly comparison","LOC100128675|GeneID=100128675"]
["chr19",40450119,40450119,3,1,"  assembly comparison","LSR|GeneID=51599"]
["chr19",40462519,40462519,4,1,"  assembly comparison","USF2|GeneID=7392"]
["chr19",40807199,40807199,6,1,"  assembly comparison","KIAA0841|GeneID=23354"]
["chr19",40906473,40906473,1,1,"  assembly comparison","MLL4|GeneID=9757"]
["chr19",41520150,41520150,1,1,"  assembly comparison","ZFP14|GeneID=57677"]
["chr19",41574761,41574761,1,1,"  assembly comparison","ZFP82|GeneID=284406"]
["chr19",41729150,41729150,3,1,"  assembly comparison","ZNF529|GeneID=57711"]
["chr19",42000414,42000414,1,1,"  assembly comparison","ZNF790|GeneID=388536"]
["chr19",42312462,42312462,2,1,"  assembly comparison","ZNF420|GeneID=147923"]
["chr19",42572776,42572776,2,1,"  assembly comparison","ZNF527|GeneID=84503"]
["chr19",42595156,42595156,1,1,"  assembly comparison","ZNF569|GeneID=148266"]
["chr19",42720830,42720830,1,1,"  assembly comparison","ZNF793|GeneID=390927"]
["chr19",42723938,42723938,1,1,"  assembly comparison","ZNF793|GeneID=390927"]
["chr19",43912610,43912610,1,1,"  assembly comparison","ACTN4|GeneID=81"]
["chr19",44019104,44019104,1,1,"  assembly comparison","HNRNPL|GeneID=3191"]
["chr19",44361452,44361452,2,1,"  assembly comparison","PAK4|GeneID=10298"]
["chr19",44383808,44383808,1,1,"  assembly comparison","NCCRP1|GeneID=342897"]
["chr19",44609325,44609325,1,1,"  assembly comparison","PLEKHG2|GeneID=64857"]
["chr19",44713558,44713558,1,1,"  assembly comparison","EID2B|GeneID=126272"]
["chr19",44713671,44713671,1,1,"  assembly comparison","EID2B|GeneID=126272"]
["chr19",45060672,45077177,16506,1,"  NimbleGen 42M","FCGBP|GeneID=8857"]
["chr19",45077920,45092865,14946,1,"  NimbleGen 42M","FCGBP|GeneID=8857"]
["chr19",45638649,45638649,1,1,"  assembly comparison","SERTAD3|GeneID=29946"]
["chr19",45814935,45814935,1,1,"  assembly comparison","LTBP4|GeneID=8425"]
["chr19",45939186,45939186,2,1,"  assembly comparison","C19orf54|GeneID=284325"]
["chr19",46074425,46079103,4679,1,"  Agilent 24M","CYP2A7|GeneID=1549"]
["chr19",46147878,46147878,1,1,"  assembly comparison","CYP2B7P1|GeneID=1556"]
["chr19",46313948,46313948,1,1,"  assembly comparison","CYP2F1|GeneID=1572"]
["chr19",46623301,46623301,12,1,"  assembly comparison","B3GNT8|GeneID=374907"]
["chr19",46926193,46926193,3,1,"  assembly comparison","CEACAM5|GeneID=1048"]
["chr19",47505744,47506272,529,1,"  Agilent 24M","PRR19|GeneID=284338"]
["chr19",48394082,48461975,67894,1,"  NimbleGen 42M","PSG4|GeneID=5672/PSG9|GeneID=5678"]
["chr19",48787847,48787847,2,1,"  assembly comparison","IRGQ|GeneID=126298"]
["chr19",49860712,49860712,1,1,"  assembly comparison","PVR|GeneID=5817"]
["chr19",50605695,50605695,8,1,"  assembly comparison","CD3EAP|GeneID=10849"]
["chr19",50663206,50663206,1,1,"  assembly comparison","FOSB|GeneID=2354"]
["chr19",50723923,50723923,1,1,"  assembly comparison","OPA3|GeneID=80207"]
["chr19",51605952,51605952,1,1,"  assembly comparison","CCDC8|GeneID=83987"]
["chr19",52025683,52025683,1,1,"  assembly comparison","SNAR-E|GeneID=100170220"]
["chr19",52199015,52199015,2,1,"  assembly comparison","GRLF1|GeneID=2909"]
["chr19",52259968,52259968,1,1,"  assembly comparison","ZC3H4|GeneID=23211"]
["chr19",52516629,52516629,1,1,"  assembly comparison","C5AR1|GeneID=728"]
["chr19",52625005,52625005,1,1,"  assembly comparison","SLC8A2|GeneID=6543"]
["chr19",52937347,52937347,4,1,"  assembly comparison","EHD2|GeneID=30846"]
["chr19",53035792,53035792,3,1,"  assembly comparison","CRX|GeneID=1406"]
["chr19",53063915,53066764,4388,1,"  mate pair","SULT2A1|GeneID=6822"]
["chr19",53090673,53155464,64792,1,"  NimbleGen 42M","SNAR-A12|GeneID=100126800/SNAR-A13|GeneID=100169959/SNAR-C5|GeneID=100170223/SNAR-C2|GeneID=100170218/SNAR-C1|GeneID=100170225/SNAR-A2|GeneID=100126799/SNAR-A1|GeneID=100126798/SNAR-A5|GeneID=100169952/SNAR-A8|GeneID=100169958/SNAR-A11|GeneID=100169954/SNAR-A6|GeneID=100169957/SNAR-A3|GeneID=100169951/SNAR-A4|GeneID=100169956/SNAR-A10|GeneID=100170216/SNAR-A9|GeneID=100169955/SNAR-A14|GeneID=100191063/SNAR-A7|GeneID=100169953/SNAR-C4|GeneID=100170219/SNAR-C3|GeneID=100170226"]
["chr19",53305599,53305599,27,1,"  split read","PLA2G4C|GeneID=8605"]
["chr19",53305631,53305631,27,1,"  split read","PLA2G4C|GeneID=8605"]
["chr19",53305811,53305811,1,1,"  assembly comparison","PLA2G4C|GeneID=8605"]
["chr19",53405167,53405167,6,1,"  assembly comparison","CARD8|GeneID=22900"]
["chr19",53656444,53656444,1,1,"  assembly comparison","KCNJ14|GeneID=3770"]
["chr19",53676555,53676555,1,1,"  assembly comparison","CYTH2|GeneID=9266"]
["chr19",53676560,53676560,1,1,"  assembly comparison","CYTH2|GeneID=9266"]
["chr19",53814191,53814711,521,1,"  Agilent 24M","RPL18|GeneID=6141/SPHK2|GeneID=56848"]
["chr19",53821037,53821037,1,1,"  assembly comparison","SPHK2|GeneID=56848"]
["chr19",54262979,54262979,5,1,"  assembly comparison","KCNA7|GeneID=3743"]
["chr19",54262986,54262986,1,1,"  assembly comparison","KCNA7|GeneID=3743"]
["chr19",54349727,54349727,3,1,"  assembly comparison","HRC|GeneID=3270"]
["chr19",54363579,54364625,2874,1,"  mate pair","TRPM4|GeneID=54795"]
["chr19",54535863,54535863,1,1,"  assembly comparison","TEAD2|GeneID=8463"]
["chr19",55102625,55102625,1,1,"  assembly comparison","NUP62|GeneID=23636"]
["chr19",55165236,55165236,4,1,"  assembly comparison","SIGLEC16|GeneID=400709"]
["chr19",55169956,55169956,3,1,"  assembly comparison","SIGLEC16|GeneID=400709"]
["chr19",55573636,55573636,3,1,"  assembly comparison","NR1H2|GeneID=7376"]
["chr19",55578005,55578005,1,1,"  assembly comparison","NR1H2|GeneID=7376"]
["chr19",55623609,55623609,1,1,"  assembly comparison","SPIB|GeneID=6689"]
["chr19",56163627,56163627,1,1,"  assembly comparison","KLK6|GeneID=5653"]
["chr19",56209131,56209131,11,1,"  assembly comparison","KLK10|GeneID=5655"]
["chr19",56368497,56368497,1,1,"  assembly comparison","SIGLECP3|GeneID=284367"]
["chr19",56696606,56696606,1,1,"  assembly comparison","SIGLEC12|GeneID=89858"]
["chr19",56807157,56807157,19,1,"  assembly comparison","SIGLEC5|GeneID=8778"]
["chr19",56838110,56838110,1,1,"  assembly comparison","SIGLEC14|GeneID=100049587"]
["chr19",56908264,56908264,1,1,"  assembly comparison","HAS1|GeneID=3036"]
["chr19",57611821,57611821,2,1,"  assembly comparison","ZNF528|GeneID=84436"]
["chr19",57708402,57708402,2,1,"  assembly comparison","ZNF578|GeneID=147660"]
["chr19",57708811,57708811,2,1,"  assembly comparison","ZNF578|GeneID=147660"]
["chr19",58123432,58123432,1,1,"  assembly comparison","ZNF321|GeneID=399669"]
["chr19",58359218,58359218,1,1,"  assembly comparison","ZNF665|GeneID=79788"]
["chr19",58578380,58578380,5,1,"  assembly comparison","ZNF525|GeneID=170958"]
["chr19",58604618,58604618,2,1,"  assembly comparison","ZNF765|GeneID=91661"]
["chr19",58606374,58606374,2,1,"  assembly comparison","ZNF765|GeneID=91661"]
["chr19",58688506,58688506,4,1,"  assembly comparison","ZNF813|GeneID=126017"]
["chr19",58716399,58716399,12,1,"  split read","ZNF331|GeneID=55422"]
["chr19",59355710,59355710,1,1,"  assembly comparison","TMC4|GeneID=147798"]
["chr19",59410750,59453547,42798,1,"  Affymetrix 6.0","LILRB3|GeneID=11025/LILRA6|GeneID=79168/LILRB5|GeneID=10990"]
["chr19",59420261,59436343,16083,1,"  Agilent 24M","LILRA6|GeneID=79168"]
["chr19",59433716,59433716,1,1,"  assembly comparison","LILRA6|GeneID=79168"]
["chr19",59915770,59915770,280,1,"  assembly comparison","LILRP2|GeneID=79166"]
["chr19",60482713,60482713,9,1,"  assembly comparison","HSPBP1|GeneID=23640"]
["chr19",60594971,60594971,2,1,"  assembly comparison","RPL28|GeneID=6158"]
["chr19",60721432,60721432,3,1,"  assembly comparison","LOC284297|GeneID=284297"]
["chr19",60781722,60781722,3,1,"  assembly comparison","ZNF579|GeneID=163033"]
["chr19",61039954,61039954,2,1,"  assembly comparison","NLRP4|GeneID=147945"]
["chr19",61582680,61582680,8,1,"  assembly comparison","ZNF542|GeneID=147947"]
["chr19",61643835,61643835,1,1,"  assembly comparison","ZNF667|GeneID=63934"]
["chr19",61711039,61711039,1,1,"  assembly comparison","ZNF471|GeneID=57573"]
["chr19",62016012,62016012,1,1,"  assembly comparison","PEG3|GeneID=5178"]
["chr19",62016394,62016394,1,1,"  assembly comparison","PEG3|GeneID=5178"]
["chr19",62434330,62434330,1,1,"  assembly comparison","AURKC|GeneID=6795"]
["chr19",62461630,62461630,3,1,"  assembly comparison","ZNF805|GeneID=390980"]
["chr19",62461808,62461808,5,1,"  assembly comparison","ZNF805|GeneID=390980"]
["chr19",62561428,62561428,1,1,"  assembly comparison","ZNF304|GeneID=57343"]
["chr19",62872240,62872240,1,1,"  assembly comparison","ZSCAN4|GeneID=201516"]
["chr19",63073138,63073138,1,1,"  assembly comparison","ZNF814|GeneID=730051"]
["chr19",63077683,63077683,3,1,"  assembly comparison","ZNF814|GeneID=730051"]
["chr19",63410173,63410173,1,1,"  assembly comparison","ZNF274|GeneID=10782"]
["chr19",63543835,63543835,1,1,"  assembly comparison","ZSCAN22|GeneID=342945"]
["chr19",63584146,63584146,1,1,"  assembly comparison","ZNF837|GeneID=116412"]
["chr19",63636186,63636186,51,1,"  split read","ZNF132|GeneID=7691"]
["chr19",63660685,63660685,1,1,"  assembly comparison","ZNF324B|GeneID=388569"]
["chr8",150426,150426,2,1,"  assembly comparison","FLJ45055|GeneID=644128"]
["chr8",409055,409055,2,1,"  assembly comparison","FBXO25|GeneID=26260"]
["chr8",598725,604628,2760,1,"  mate pair","ERICH1|GeneID=157697"]
["chr8",1699302,1699302,1,1,"  assembly comparison","CLN8|GeneID=2055"]
["chr8",1716995,1716995,3,1,"  assembly comparison","CLN8|GeneID=2055"]
["chr8",1717554,1717554,2,1,"  assembly comparison","CLN8|GeneID=2055"]
["chr8",2782379,2782379,3,1,"  assembly comparison","CSMD1|GeneID=64478"]
["chr8",6322551,6326002,5196,1,"  mate pair","MCPH1|GeneID=79648"]
["chr8",7199070,7430417,231348,1,"  NimbleGen 42M","DEFB103B|GeneID=414325/SPAG11B|GeneID=10407/DEFB104A|GeneID=140596/DEFB104B|GeneID=503618/DEFB106A|GeneID=245909/DEFB106B|GeneID=503841/DEFB105B|GeneID=504180/DEFB105A|GeneID=245908/DEFB107A|GeneID=245910/DEFB107B|GeneID=503614/FAM90A7|GeneID=441317"]
["chr8",7607725,7830341,222617,1,"  NimbleGen 42M","SPAG11A|GeneID=653423/DEFB103A|GeneID=55894/DEFB4|GeneID=1673"]
["chr8",8133252,8133252,5,1,"  assembly comparison","hCG_1990547|GeneID=286042"]
["chr8",8139726,8139726,1,1,"  assembly comparison","hCG_1990547|GeneID=286042"]
["chr8",8213811,8213811,6,1,"  assembly comparison","PRAGMIN|GeneID=157285"]
["chr8",8680317,8680317,2,1,"  assembly comparison","MFHAS1|GeneID=9258"]
["chr8",8924956,8924956,3,1,"  assembly comparison","ERI1|GeneID=90459"]
["chr8",8928128,8928128,1,1,"  assembly comparison","ERI1|GeneID=90459"]
["chr8",10504990,10504990,192,1,"  split read","RP1L1|GeneID=94137"]
["chr8",10504997,10504997,192,1,"  assembly comparison","RP1L1|GeneID=94137"]
["chr8",11179804,11179804,1,1,"  assembly comparison","MTMR9|GeneID=66036"]
["chr8",11220589,11220589,1,1,"  assembly comparison","MTMR9|GeneID=66036"]
["chr8",11681224,11681224,1,1,"  assembly comparison","NEIL2|GeneID=252969"]
["chr8",11681546,11681546,1,1,"  assembly comparison","NEIL2|GeneID=252969"]
["chr8",11681562,11681562,1,1,"  assembly comparison","NEIL2|GeneID=252969"]
["chr8",11737875,11737875,1,1,"  assembly comparison","CTSB|GeneID=1508"]
["chr8",12022939,12035489,12551,1,"  NimbleGen 42M","LOC392196|GeneID=392196/DUB3|GeneID=377630"]
["chr8",12924069,12924069,1,1,"  assembly comparison","C8orf79|GeneID=57604"]
["chr8",12930453,12930453,12,1,"  assembly comparison","C8orf79|GeneID=57604"]
["chr8",16041655,16041655,1,1,"  assembly comparison","MSR1|GeneID=4481"]
["chr8",17123881,17123881,1,1,"  assembly comparison","ZDHHC2|GeneID=51201"]
["chr8",17131731,17131731,2,1,"  assembly comparison","CNOT7|GeneID=29883"]
["chr8",17132421,17132421,1,1,"  assembly comparison","CNOT7|GeneID=29883"]
["chr8",17199345,17199345,3,1,"  assembly comparison","VPS37A|GeneID=137492"]
["chr8",17929694,17929694,1,1,"  assembly comparison","PCM1|GeneID=5108"]
["chr8",17930971,17930971,1,1,"  assembly comparison","PCM1|GeneID=5108"]
["chr8",18433260,18433260,3,1,"  assembly comparison","PSD3|GeneID=23362"]
["chr8",18435723,18435723,1,1,"  assembly comparison","PSD3|GeneID=23362"]
["chr8",18437450,18437450,1,1,"  assembly comparison","PSD3|GeneID=23362"]
["chr8",19306414,19306414,4,1,"  assembly comparison","CSGALNACT1|GeneID=55790"]
["chr8",19504156,19504156,1,1,"  assembly comparison","CSGALNACT1|GeneID=55790"]
["chr8",19719251,19719251,6,1,"  assembly comparison","INTS10|GeneID=55174"]
["chr8",22011999,22011999,1,1,"  assembly comparison","FAM160B2|GeneID=64760"]
["chr8",22022855,22022855,22,1,"  assembly comparison","NUDT18|GeneID=79873"]
["chr8",22334958,22334958,3,1,"  assembly comparison","SLC39A14|GeneID=23516"]
["chr8",22533893,22533893,3,1,"  assembly comparison","KIAA1967|GeneID=57805/BIN3|GeneID=55909"]
["chr8",22626728,22626728,2,1,"  assembly comparison","PEBP4|GeneID=157310"]
["chr8",23105095,23105095,1,1,"  assembly comparison","TNFRSF10A|GeneID=8797"]
["chr8",23345974,23345974,1,1,"  assembly comparison","ENTPD4|GeneID=9583"]
["chr8",23594165,23594165,4,1,"  assembly comparison","NKX3-1|GeneID=4824"]
["chr8",23755963,23755963,2,1,"  assembly comparison","STC1|GeneID=6781"]
["chr8",24249518,24249518,2,1,"  assembly comparison","ADAM28|GeneID=10863"]
["chr8",25325534,25325534,2,1,"  assembly comparison","DOCK5|GeneID=80005"]
["chr8",25337789,25337789,1,1,"  assembly comparison","GNRH1|GeneID=2796"]
["chr8",25802624,25806649,3549,1,"  mate pair","EBF2|GeneID=64641"]
["chr8",26491427,26491427,4,1,"  assembly comparison","DPYSL2|GeneID=1808"]
["chr8",26569241,26569241,1,1,"  assembly comparison","DPYSL2|GeneID=1808"]
["chr8",27199122,27199122,1,1,"  assembly comparison","TRIM35|GeneID=23087"]
["chr8",27450255,27450255,3,1,"  assembly comparison","EPHX2|GeneID=2053"]
["chr8",27648029,27648029,12,1,"  assembly comparison","CCDC25|GeneID=55246"]
["chr8",27717003,27717003,4,1,"  assembly comparison","ESCO2|GeneID=157570"]
["chr8",28259212,28259212,4,1,"  assembly comparison","ZNF395|GeneID=55893"]
["chr8",28261687,28261687,1,1,"  assembly comparison","ZNF395|GeneID=55893"]
["chr8",28261722,28261722,1,1,"  assembly comparison","ZNF395|GeneID=55893"]
["chr8",28407749,28407749,2,1,"  assembly comparison","FZD3|GeneID=7976"]
["chr8",30084818,30084818,1,1,"  assembly comparison","LEPROTL1|GeneID=23484"]
["chr8",30740386,30740386,1,1,"  assembly comparison","UBXN8|GeneID=7993"]
["chr8",33348151,33348151,1,1,"  assembly comparison","FUT10|GeneID=84750"]
["chr8",33475749,33475749,1,1,"  assembly comparison","MAK16|GeneID=84549"]
["chr8",37913463,37913463,1,1,"  assembly comparison","GOT1L1|GeneID=137362"]
["chr8",38400010,38400010,1,1,"  assembly comparison","FGFR1|GeneID=2260"]
["chr8",38825651,38825651,1,1,"  assembly comparison","TACC1|GeneID=6867"]
["chr8",39300897,39300897,1,1,"  assembly comparison","ADAM5P|GeneID=255926"]
["chr8",39490793,39490793,1,1,"  assembly comparison","ADAM3A|GeneID=1587"]
["chr8",41519057,41519057,1,1,"  assembly comparison","GINS4|GeneID=84296"]
["chr8",41907404,41907404,2,1,"  assembly comparison","MYST3|GeneID=7994"]
["chr8",43001718,43001718,5,1,"  assembly comparison","HOOK3|GeneID=84376"]
["chr8",48968370,48968370,1,1,"  assembly comparison","PRKDC|GeneID=5591"]
["chr8",52893539,52893539,3,1,"  assembly comparison","PCMTD1|GeneID=115294"]
["chr8",52895351,52895351,1,1,"  assembly comparison","PCMTD1|GeneID=115294"]
["chr8",55705713,55705713,1,1,"  assembly comparison","RP1|GeneID=6101"]
["chr8",57237485,57237485,1,1,"  assembly comparison","PLAG1|GeneID=5324"]
["chr8",57238349,57238349,1,1,"  assembly comparison","PLAG1|GeneID=5324"]
["chr8",57375288,57375288,2,1,"  assembly comparison","SDR16C5|GeneID=195814"]
["chr8",59223299,59223299,1,1,"  assembly comparison","FAM110B|GeneID=90362"]
["chr8",59523303,59523303,1,1,"  assembly comparison","UBXN2B|GeneID=137886"]
["chr8",61753924,61753924,3,1,"  assembly comparison","CHD7|GeneID=55636"]
["chr8",64261283,64261283,1,1,"  assembly comparison","YTHDF3|GeneID=253943"]
["chr8",65651535,65651535,1,1,"  assembly comparison","LOC401463|GeneID=401463"]
["chr8",65656602,65656602,3,1,"  assembly comparison","BHLHE22|GeneID=27319"]
["chr8",67935639,67935639,1,1,"  assembly comparison","SGK3|GeneID=23678"]
["chr8",71126579,71126579,5,1,"  assembly comparison","PRDM14|GeneID=63978"]
["chr8",74139519,74139519,1,1,"  assembly comparison","C8orf84|GeneID=157869"]
["chr8",74398442,74398442,2,1,"  assembly comparison","RDH10|GeneID=157506"]
["chr8",74398461,74398461,1,1,"  assembly comparison","RDH10|GeneID=157506"]
["chr8",75310288,75310288,1,1,"  assembly comparison","JPH1|GeneID=56704"]
["chr8",77941608,77941608,1,1,"  assembly comparison","ZFHX4|GeneID=79776"]
["chr8",79792307,79792307,1,1,"  assembly comparison","FAM164A|GeneID=51101"]
["chr8",79794024,79794024,1,1,"  assembly comparison","FAM164A|GeneID=51101"]
["chr8",82516363,82516363,8,1,"  assembly comparison","PMP2|GeneID=5375"]
["chr8",82874798,82874798,2,1,"  assembly comparison","SNX16|GeneID=64089"]
["chr8",85259146,85259146,1,1,"  assembly comparison","RALYL|GeneID=138046"]
["chr8",86314082,86314082,6,1,"  assembly comparison","C8orf59|GeneID=401466"]
["chr8",86382417,86382417,1,1,"  assembly comparison","CA13|GeneID=377677"]
["chr8",86754139,86763703,9565,1,"  NimbleGen 42M","REXO1L1|GeneID=254958/REXO1L2P|GeneID=441362"]
["chr8",87235121,87235121,5,1,"  assembly comparison","ATP6V0D2|GeneID=245972"]
["chr8",87537510,87540318,3164,1,"  mate pair","WWP1|GeneID=11059"]
["chr8",87641954,87641954,1,1,"  assembly comparison","CPNE3|GeneID=8895"]
["chr8",88952340,88952340,2,1,"  assembly comparison","WDR21C|GeneID=138009"]
["chr8",92038347,92038347,2,1,"  assembly comparison","NECAB1|GeneID=64168"]
["chr8",92076573,92076573,1,1,"  assembly comparison","TMEM55A|GeneID=55529"]
["chr8",93040372,93040372,1,1,"  assembly comparison","RUNX1T1|GeneID=862"]
["chr8",93040845,93040845,6,1,"  assembly comparison","RUNX1T1|GeneID=862"]
["chr8",94813396,94813396,4,1,"  assembly comparison","RBM12B|GeneID=389677"]
["chr8",96007836,96007836,1,1,"  assembly comparison","TP53INP1|GeneID=94241"]
["chr8",96009326,96009326,2,1,"  assembly comparison","TP53INP1|GeneID=94241"]
["chr8",97225695,97225695,2,1,"  assembly comparison","GDF6|GeneID=392255"]
["chr8",97311311,97311311,2,1,"  assembly comparison","UQCRB|GeneID=7381"]
["chr8",100957322,100957322,3,1,"  assembly comparison","VPS13B|GeneID=157680"]
["chr8",100957668,100957668,2,1,"  assembly comparison","VPS13B|GeneID=157680"]
["chr8",100957768,100957768,3,1,"  assembly comparison","VPS13B|GeneID=157680"]
["chr8",102001286,102001286,5,1,"  assembly comparison","YWHAZ|GeneID=7534"]
["chr8",102750670,102750670,13,1,"  assembly comparison","GRHL2|GeneID=79977"]
["chr8",103320356,103320356,8,1,"  assembly comparison","RRM2B|GeneID=50484"]
["chr8",105333280,105333280,2,1,"  assembly comparison","RIMS2|GeneID=9699"]
["chr8",105571637,105571637,1,1,"  assembly comparison","LRP12|GeneID=29967"]
["chr8",110323106,110323106,4,1,"  assembly comparison","NUDCD1|GeneID=84955"]
["chr8",110324191,110324191,1,1,"  assembly comparison","NUDCD1|GeneID=84955"]
["chr8",116490685,116490685,8,1,"  assembly comparison","TRPS1|GeneID=7227"]
["chr8",116491336,116491336,1,1,"  assembly comparison","TRPS1|GeneID=7227"]
["chr8",116493446,116493446,1,1,"  assembly comparison","TRPS1|GeneID=7227"]
["chr8",122722601,122722601,2,1,"  assembly comparison","HAS2|GeneID=3037"]
["chr8",131861801,131861801,4,1,"  assembly comparison","ADCY8|GeneID=114"]
["chr8",134540325,134540325,1,1,"  assembly comparison","ST3GAL1|GeneID=6482"]
["chr8",136728685,136728685,1,1,"  assembly comparison","KHDRBS3|GeneID=10656"]
["chr8",142482887,142505388,12814,1,"  mate pair","PTP4A3|GeneID=11156"]
["chr8",143736820,143736820,2,1,"  assembly comparison","JRK|GeneID=8629"]
["chr8",143854445,143854445,2,1,"  assembly comparison","LYNX1|GeneID=66004"]
["chr8",144369534,144369534,1,1,"  assembly comparison","GPIHBP1|GeneID=338328"]
["chr8",144413676,144413676,25,1,"  split read","ZFP41|GeneID=286128"]
["chr8",144415487,144415487,24,1,"  assembly comparison","ZFP41|GeneID=286128"]
["chr8",145011513,145012205,3663,1,"  mate pair","EPPK1|GeneID=83481"]
["chr8",145012079,145012079,2,1,"  assembly comparison","EPPK1|GeneID=83481"]
["chr8",145012545,145012545,1602,1,"  assembly comparison","EPPK1|GeneID=83481"]
["chr8",145186553,145189328,2776,1,"  Agilent 24M","OPLAH|GeneID=26873"]
["chr8",145624988,145624988,1,1,"  assembly comparison","NFKBIL2|GeneID=4796"]
["chr8",146076268,146076268,3,1,"  assembly comparison","ZNF250|GeneID=58500"]
["chr8",146194171,146194171,1,1,"  assembly comparison","TMED10P|GeneID=286102"]
["chrY",3507726,3507726,1,1,"  assembly comparison","TGIF2LY|GeneID=90655"]
["chrY",5667613,5667613,5,1,"  assembly comparison","PCDH11Y|GeneID=83259"]
["chrY",19613916,19613916,2741,1,"  assembly comparison","CD24|GeneID=100133941"]
["chrY",20225959,20225959,4,1,"  assembly comparison","CYorf15B|GeneID=84663"]
["chr1",751820,751820,1,1,"  assembly comparison","NCRNA00115|GeneID=79854"]
["chr1",938710,938710,1,1,"  assembly comparison","ISG15|GeneID=9636"]
["chr1",1128865,1128865,1,1,"  assembly comparison","TNFRSF18|GeneID=8784"]
["chr1",1311169,1311169,1,1,"  assembly comparison","CCNL2|GeneID=81669"]
["chr1",1325999,1325999,2,1,"  assembly comparison","LOC148413|GeneID=148413"]
["chr1",1394379,1394379,1,1,"  assembly comparison","ATAD3C|GeneID=219293"]
["chr1",1584063,1584063,1,1,"  assembly comparison","RP11-345P4.4|GeneID=728661"]
["chr1",1674209,1674209,3,1,"  assembly comparison","NADK|GeneID=65220"]
["chr1",1843478,1843478,4,1,"  assembly comparison","C1orf222|GeneID=339457"]
["chr1",1886240,1886240,1,1,"  assembly comparison","KIAA1751|GeneID=85452"]
["chr1",2110630,2110630,1,1,"  assembly comparison","LOC100128003|GeneID=100128003"]
["chr1",2231246,2231246,2,1,"  assembly comparison","SKI|GeneID=6497"]
["chr1",3387278,3387278,2,1,"  assembly comparison","ARHGEF16|GeneID=27237"]
["chr1",3687409,3687409,1,1,"  assembly comparison","LRRC47|GeneID=57470"]
["chr1",3721514,3721514,1,1,"  assembly comparison","KIAA0562|GeneID=9731"]
["chr1",4743430,4743430,2,1,"  assembly comparison","AJAP1|GeneID=55966"]
["chr1",6085408,6085408,1,1,"  assembly comparison","CHD5|GeneID=450091"]
["chr1",6087140,6087140,2,1,"  assembly comparison","CHD5|GeneID=450091"]
["chr1",6574037,6574037,1,1,"  assembly comparison","KLHL21|GeneID=9903"]
["chr1",7750503,7750503,2,1,"  assembly comparison","CAMTA1|GeneID=23261"]
["chr1",7902969,7902969,1,1,"  assembly comparison","TNFRSF9|GeneID=3604"]
["chr1",7994405,7994405,2,1,"  assembly comparison","ERRFI1|GeneID=54206"]
["chr1",8800122,8800122,2,1,"  assembly comparison","RERE|GeneID=473"]
["chr1",8957407,8957407,3,1,"  assembly comparison","CA6|GeneID=765"]
["chr1",10163722,10163722,1,1,"  assembly comparison","UBE4B|GeneID=10277"]
["chr1",11007592,11007592,5,1,"  assembly comparison","TARDBP|GeneID=23435"]
["chr1",11519850,11519850,1,1,"  assembly comparison","PTCHD2|GeneID=57540"]
["chr1",11520036,11520036,1,1,"  assembly comparison","PTCHD2|GeneID=57540"]
["chr1",11644422,11644422,2,1,"  assembly comparison","FBXO44|GeneID=93611"]
["chr1",11768690,11768690,1,1,"  assembly comparison","MTHFR|GeneID=4524"]
["chr1",11769926,11769926,3,1,"  assembly comparison","MTHFR|GeneID=4524"]
["chr1",12190528,12190528,1,1,"  assembly comparison","TNFRSF1B|GeneID=7133"]
["chr1",12190568,12190568,1,1,"  assembly comparison","TNFRSF1B|GeneID=7133"]
["chr1",12764394,12873662,109269,1,"  NimbleGen 42M","PRAMEF1|GeneID=65121/HNRNPCL1|GeneID=343069/PRAMEF2|GeneID=65122/PRAMEF4|GeneID=400735"]
["chr1",12920968,12975585,54618,1,"  NimbleGen 42M","PRAMEF6|GeneID=440561"]
["chr1",13025586,13047004,21419,1,"  NimbleGen 42M","PRAMEF5|GeneID=343068"]
["chr1",13192500,13241441,48942,1,"  NimbleGen 42M","PRAMEF3|GeneID=401940/PRAMEF22|GeneID=653606"]
["chr1",13289638,13347927,58290,1,"  NimbleGen 42M","PRAMEF9|GeneID=343070/PRAMEF15|GeneID=653619/PRAMEF14|GeneID=729528/PRAMEF18|GeneID=391003/PRAMEF19|GeneID=645414"]
["chr1",13509546,13569151,59606,1,"  NimbleGen 42M","PRAMEF13|GeneID=400736"]
["chr1",13816240,13816240,1,1,"  assembly comparison","PDPN|GeneID=10630"]
["chr1",13816824,13816824,2,1,"  assembly comparison","PDPN|GeneID=10630"]
["chr1",13978986,13978986,3,1,"  assembly comparison","PRDM2|GeneID=7799"]
["chr1",15266313,15266313,1,1,"  assembly comparison","RP1-21O18.1|GeneID=23254"]
["chr1",15772350,15772350,1,1,"  assembly comparison","AGMAT|GeneID=79814"]
["chr1",16035011,16035011,2,1,"  assembly comparison","hCG_2008140|GeneID=729614"]
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["chr1",16691500,16691500,2,1,"  assembly comparison","CROCCL2|GeneID=114819"]
["chr1",16954850,16954850,1,1,"  assembly comparison","MSTP9|GeneID=11223"]
["chr1",17171604,17171604,1,1,"  assembly comparison","CROCC|GeneID=9696"]
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["chr1",85505169,85505169,1,1,"  assembly comparison","BCL10|GeneID=8915"]
["chr1",85558138,85558138,1,1,"  assembly comparison","DDAH1|GeneID=23576"]
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["chr1",103915864,103923698,7835,1,"  NimbleGen 42M","AMY2B|GeneID=280"]
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["chr1",202011150,202011150,1,1,"  assembly comparison","LAX1|GeneID=54900"]
["chr1",202787749,202787749,1,1,"  assembly comparison","MDM4|GeneID=4194"]
["chr1",202788639,202788639,2,1,"  assembly comparison","MDM4|GeneID=4194"]
["chr1",202793686,202793686,3,1,"  assembly comparison","MDM4|GeneID=4194"]
["chr1",203255252,203255252,8,1,"  assembly comparison","NFASC|GeneID=23114"]
["chr1",203322965,203322965,1,1,"  assembly comparison","RBBP5|GeneID=5929"]
["chr1",203323471,203323471,2,1,"  assembly comparison","RBBP5|GeneID=5929"]
["chr1",203539126,203539126,1,1,"  assembly comparison","NUAK2|GeneID=81788"]
["chr1",203740378,203740378,3,1,"  assembly comparison","PCTK3|GeneID=5129"]
["chr1",204004300,204004300,1,1,"  assembly comparison","RAB7L1|GeneID=8934"]
["chr1",204701893,204701893,4,1,"  assembly comparison","SRGAP2|GeneID=23380"]
["chr1",204703124,204703124,1,1,"  assembly comparison","SRGAP2|GeneID=23380"]
["chr1",205068998,205068998,1,1,"  assembly comparison","IL19|GeneID=29949"]
["chr1",205144267,205144267,6,1,"  assembly comparison","FAIM3|GeneID=9214"]
["chr1",205316596,205316596,32,1,"  split read","PFKFB2|GeneID=5208"]
["chr1",205316642,205316642,32,1,"  assembly comparison","PFKFB2|GeneID=5208"]
["chr1",205320204,205320204,1,1,"  assembly comparison","PFKFB2|GeneID=5208"]
["chr1",206266623,206266623,2,1,"  assembly comparison","PLXNA2|GeneID=5362"]
["chr1",209983525,209983525,1,1,"  assembly comparison","LPGAT1|GeneID=9926"]
["chr1",210344233,210344233,22,1,"  assembly comparison","DTL|GeneID=51514"]
["chr1",210967057,210967057,1,1,"  assembly comparison","NSL1|GeneID=25936"]
["chr1",210972294,210972294,2,1,"  assembly comparison","NSL1|GeneID=25936"]
["chr1",210973417,210973417,1,1,"  assembly comparison","NSL1|GeneID=25936"]
["chr1",211231125,211231125,4,1,"  assembly comparison","VASH2|GeneID=79805"]
["chr1",212865341,212870052,2328,1,"  mate pair","CENPF|GeneID=1063"]
["chr1",213476022,213476022,11,1,"  assembly comparison","KCNK2|GeneID=3776"]
["chr1",216040315,216043530,2997,1,"  mate pair","SPATA17|GeneID=128153"]
["chr1",216571655,216571655,2,1,"  assembly comparison","RRP15|GeneID=51018"]
["chr1",219119405,219119405,1,1,"  assembly comparison","HLX|GeneID=3142"]
["chr1",219119424,219119424,1,1,"  assembly comparison","HLX|GeneID=3142"]
["chr1",220906671,220906671,3,1,"  assembly comparison","MIA3|GeneID=375056"]
["chr1",220952284,220952284,1,1,"  assembly comparison","AIDA|GeneID=64853"]
["chr1",223745813,223745813,1,1,"  assembly comparison","ENAH|GeneID=55740"]
["chr1",223747184,223747184,4,1,"  assembly comparison","ENAH|GeneID=55740"]
["chr1",223748408,223748408,5,1,"  assembly comparison","ENAH|GeneID=55740"]
["chr1",223749802,223749802,2,1,"  assembly comparison","ENAH|GeneID=55740"]
["chr1",224399325,224399325,1,1,"  assembly comparison","ACBD3|GeneID=64746"]
["chr1",224400174,224400174,5,1,"  assembly comparison","ACBD3|GeneID=64746"]
["chr1",225571852,225571852,1,1,"  assembly comparison","CDC42BPA|GeneID=8476"]
["chr1",225572443,225572443,1,1,"  assembly comparison","CDC42BPA|GeneID=8476"]
["chr1",226626064,226626064,1,1,"  assembly comparison","OBSCN|GeneID=84033"]
["chr1",227801645,227801645,1,1,"  assembly comparison","TAF5L|GeneID=27097"]
["chr1",229221557,229221557,2,1,"  assembly comparison","FAM89A|GeneID=375061"]
["chr1",229537892,229537892,1,1,"  assembly comparison","EXOC8|GeneID=149371"]
["chr1",230018121,230018121,1,1,"  assembly comparison","DISC2|GeneID=27184"]
["chr1",231585607,231585607,1,1,"  assembly comparison","KIAA1804|GeneID=84451"]
["chr1",231586940,231586940,1,1,"  assembly comparison","KIAA1804|GeneID=84451"]
["chr1",232807541,232807541,9,1,"  assembly comparison","IRF2BP2|GeneID=359948"]
["chr1",233573496,233573496,1,1,"  assembly comparison","GGPS1|GeneID=9453"]
["chr1",234768471,234788319,19849,1,"  NimbleGen 42M","LGALS8|GeneID=3964/HEATR1|GeneID=55127"]
["chr1",238437863,238437863,66,1,"  assembly comparison","FMN2|GeneID=56776"]
["chr1",239822724,239822724,18,1,"  assembly comparison","KMO|GeneID=8564"]
["chr1",242870120,242870120,3,1,"  assembly comparison","C1orf101|GeneID=257044"]
["chr1",245215535,245215535,3,1,"  assembly comparison","ZNF695|GeneID=57116"]
["chr1",245266796,245266796,8,1,"  assembly comparison","ZNF670|GeneID=93474"]
["chr1",245340520,245340520,1,1,"  assembly comparison","FLJ45717|GeneID=388759"]
["chr1",245678780,245678780,1,1,"  assembly comparison","NLRP3|GeneID=114548"]
["chr1",245760452,245760452,1,1,"  assembly comparison","OR2C3|GeneID=81472"]
["chr1",245760729,245760729,29,1,"  assembly comparison","OR2C3|GeneID=81472"]
["chr1",246108092,246108092,8,1,"  assembly comparison","TRIM58|GeneID=25893"]
["chr1",247086709,247086709,1,1,"  assembly comparison","SH3BP5L|GeneID=80851"]
["chr6",356004,356004,1,1,"  assembly comparison","IRF4|GeneID=3662"]
["chr6",1336086,1336086,3,1,"  assembly comparison","FOXF2|GeneID=2295"]
["chr6",1340811,1340811,1,1,"  assembly comparison","FOXF2|GeneID=2295"]
["chr6",3209524,3209524,1,1,"  assembly comparison","PSMG4|GeneID=389362"]
["chr6",3214413,3214413,1,1,"  assembly comparison","SLC22A23|GeneID=63027"]
["chr6",3214895,3214895,2,1,"  assembly comparison","SLC22A23|GeneID=63027"]
["chr6",3216473,3216473,3,1,"  assembly comparison","SLC22A23|GeneID=63027"]
["chr6",5943343,5943343,1,1,"  assembly comparison","NRN1|GeneID=51299"]
["chr6",7194294,7194294,10,1,"  assembly comparison","RREB1|GeneID=6239"]
["chr6",7960414,7960414,1,1,"  assembly comparison","MUTED|GeneID=63915"]
["chr6",10872084,10872084,1,1,"  assembly comparison","MAK|GeneID=4117"]
["chr6",11245049,11245049,1,1,"  assembly comparison","LOC221710|GeneID=221710"]
["chr6",11245641,11245641,1,1,"  assembly comparison","LOC221710|GeneID=221710"]
["chr6",11822186,11822186,1,1,"  assembly comparison","C6orf105|GeneID=84830"]
["chr6",11822639,11822639,2,1,"  assembly comparison","C6orf105|GeneID=84830"]
["chr6",13730112,13730112,1,1,"  assembly comparison","RANBP9|GeneID=10048"]
["chr6",15628916,15628916,2,1,"  assembly comparison","JARID2|GeneID=3720"]
["chr6",16435893,16435893,12,1,"  split read","ATXN1|GeneID=6310"]
["chr6",17665206,17665206,2,1,"  assembly comparison","CAP2|GeneID=10486"]
["chr6",17868787,17868787,1,1,"  assembly comparison","KIF13A|GeneID=63971"]
["chr6",18575618,18575618,1,1,"  assembly comparison","RNF144B|GeneID=255488"]
["chr6",24255552,24255552,1,1,"  assembly comparison","NRSN1|GeneID=140767"]
["chr6",24532427,24532427,1,1,"  assembly comparison","MRS2|GeneID=57380"]
["chr6",24754095,24754095,2,1,"  assembly comparison","KIAA0319|GeneID=9856"]
["chr6",24912660,24912660,1,1,"  assembly comparison","FAM65B|GeneID=9750"]
["chr6",25809953,25809953,1,1,"  assembly comparison","SCGN|GeneID=10590"]
["chr6",26342587,26342587,3,1,"  assembly comparison","HIST1H1D|GeneID=3007"]
["chr6",26484443,26484443,1,1,"  assembly comparison","BTN3A2|GeneID=11118"]
["chr6",26634798,26634798,1,1,"  assembly comparison","HCG11|GeneID=493812"]
["chr6",26744970,26744970,1,1,"  assembly comparison","ZNF322A|GeneID=79692"]
["chr6",27331945,27331945,4,1,"  assembly comparison","PRSS16|GeneID=10279"]
["chr6",28170422,28170422,1,1,"  assembly comparison","ZSCAN12L1|GeneID=221584"]
["chr6",28170625,28170625,1,1,"  assembly comparison","ZSCAN12L1|GeneID=221584"]
["chr6",28291233,28291233,9,1,"  assembly comparison","LOC222699|GeneID=222699"]
["chr6",28292660,28292660,4,1,"  assembly comparison","LOC222699|GeneID=222699"]
["chr6",28347912,28347912,1,1,"  assembly comparison","ZNF187|GeneID=7741"]
["chr6",29748089,29748089,4,1,"  assembly comparison","MOG|GeneID=4340"]
["chr6",29826730,29826730,1,1,"  assembly comparison","IFITM4P|GeneID=340198"]
["chr6",30019045,30045886,26842,1,"  NimbleGen 42M","HLA-A|GeneID=3105"]
["chr6",30701867,30701867,1,1,"  assembly comparison","MRPS18B|GeneID=28973"]
["chr6",30975207,30975207,1,1,"  assembly comparison","DDR1|GeneID=780"]
["chr6",31131794,31131794,1,1,"  assembly comparison","HCG22|GeneID=285834"]
["chr6",31546995,31546995,314,1,"  assembly comparison","HCG26|GeneID=352961"]
["chr6",31714885,31714885,4,1,"  assembly comparison","BAT3|GeneID=7917"]
["chr6",31728114,31728114,6,1,"  assembly comparison","BAT3|GeneID=7917"]
["chr6",31905753,31905753,5,1,"  assembly comparison","HSPA1B|GeneID=3304"]
["chr6",32299668,32299668,9,1,"  assembly comparison","NOTCH4|GeneID=4855"]
["chr6",32558477,32634909,76433,1,"  Agilent 24M","HLA-DRB5|GeneID=3127/HLA-DRB6|GeneID=3128"]
["chr6",32609297,32646339,37043,1,"  NimbleGen 42M","HLA-DRB6|GeneID=3128"]
["chr6",32708569,32765500,56932,1,"  NimbleGen 42M","HLA-DQA1|GeneID=3117/HLA-DQB1|GeneID=3119"]
["chr6",32711747,32733981,22235,1,"  Agilent 24M","HLA-DQA1|GeneID=3117"]
["chr6",32822953,32822953,1,1,"  assembly comparison","HLA-DQA2|GeneID=3118"]
["chr6",33024523,33024523,3,1,"  assembly comparison","HLA-DMA|GeneID=3108"]
["chr6",33081454,33081454,1,1,"  assembly comparison","HLA-DOA|GeneID=3111"]
["chr6",33081458,33081458,1,1,"  assembly comparison","HLA-DOA|GeneID=3111"]
["chr6",33081963,33081963,1,1,"  assembly comparison","HLA-DOA|GeneID=3111"]
["chr6",33394380,33394380,2,1,"  assembly comparison","DAXX|GeneID=1616"]
["chr6",34312948,34312948,2,1,"  assembly comparison","HMGA1|GeneID=3159"]
["chr6",34663646,34663646,1,1,"  assembly comparison","C6orf106|GeneID=64771"]
["chr6",34965282,34965282,6,1,"  assembly comparison","ANKS1A|GeneID=23294"]
["chr6",35862769,35872346,9578,1,"  NimbleGen 42M","C6orf127|GeneID=340204/CLPS|GeneID=1208"]
["chr6",35899223,35899223,2,1,"  assembly comparison","LHFPL5|GeneID=222662"]
["chr6",36186907,36186907,1,1,"  assembly comparison","MAPK14|GeneID=1432"]
["chr6",36931482,36931482,1,1,"  assembly comparison","PPIL1|GeneID=51645"]
["chr6",36961666,36961666,1,1,"  assembly comparison","C6orf89|GeneID=221477"]
["chr6",36961768,36961768,1,1,"  assembly comparison","C6orf89|GeneID=221477"]
["chr6",37000817,37000817,1,1,"  assembly comparison","C6orf89|GeneID=221477"]
["chr6",38245237,38245237,4,1,"  assembly comparison","BTBD9|GeneID=114781"]
["chr6",38245661,38245661,1,1,"  assembly comparison","BTBD9|GeneID=114781"]
["chr6",38247310,38247310,14,1,"  assembly comparison","BTBD9|GeneID=114781"]
["chr6",41304084,41304084,3,1,"  assembly comparison","TREML4|GeneID=285852"]
["chr6",41325176,41325176,3,1,"  assembly comparison","TREML2P|GeneID=221438"]
["chr6",42011342,42011342,1,1,"  assembly comparison","CCND3|GeneID=896"]
["chr6",42155449,42155449,1,1,"  assembly comparison","TAF8|GeneID=129685"]
["chr6",42155724,42155724,1,1,"  assembly comparison","TAF8|GeneID=129685"]
["chr6",42156093,42156093,1,1,"  assembly comparison","TAF8|GeneID=129685"]
["chr6",42282961,42282961,1,1,"  assembly comparison","MRPS10|GeneID=55173"]
["chr6",42302257,42302257,1,1,"  assembly comparison","TRERF1|GeneID=55809"]
["chr6",42943801,42943801,2,1,"  assembly comparison","KIAA0240|GeneID=23506"]
["chr6",43004929,43004929,3,1,"  assembly comparison","CNPY3|GeneID=10695"]
["chr6",43129965,43129965,1,1,"  assembly comparison","MRPL2|GeneID=51069"]
["chr6",43130034,43130034,1,1,"  assembly comparison","MRPL2|GeneID=51069"]
["chr6",43412658,43412658,1,1,"  assembly comparison","ZNF318|GeneID=24149"]
["chr6",43691406,43691406,1,1,"  assembly comparison","POLH|GeneID=5429"]
["chr6",43966916,43966916,2,1,"  assembly comparison","LOC100132354|GeneID=100132354"]
["chr6",44245134,44245134,1,1,"  assembly comparison","CAPN11|GeneID=11131"]
["chr6",44375631,44375631,14,1,"  assembly comparison","AARS2|GeneID=57505"]
["chr6",44375708,44375708,5,1,"  assembly comparison","AARS2|GeneID=57505"]
["chr6",45974275,45974275,1,1,"  assembly comparison","CLIC5|GeneID=53405"]
["chr6",45977492,45977492,1,1,"  assembly comparison","CLIC5|GeneID=53405"]
["chr6",46780165,46780165,2,1,"  assembly comparison","PLA2G7|GeneID=7941"]
["chr6",46780206,46780206,2,1,"  assembly comparison","PLA2G7|GeneID=7941"]
["chr6",46914896,46914896,12,1,"  assembly comparison","MEP1A|GeneID=4224"]
["chr6",47308354,47308354,2,1,"  assembly comparison","TNFRSF21|GeneID=27242"]
["chr6",47700432,47700432,6,1,"  assembly comparison","CD2AP|GeneID=23607"]
["chr6",47797570,47797570,1,1,"  assembly comparison","GPR115|GeneID=221393"]
["chr6",49909942,49909942,1,1,"  assembly comparison","CRISP1|GeneID=167"]
["chr6",50789628,50789628,1,1,"  assembly comparison","TFAP2D|GeneID=83741"]
["chr6",50919974,50919974,1,1,"  assembly comparison","TFAP2B|GeneID=7021"]
["chr6",52380429,52380429,4,1,"  assembly comparison","PAQR8|GeneID=85315"]
["chr6",52466142,52466142,24,1,"  assembly comparison","EFHC1|GeneID=114327"]
["chr6",52466847,52466847,2,1,"  assembly comparison","EFHC1|GeneID=114327"]
["chr6",52639813,52639813,1,1,"  assembly comparison","LOC730101|GeneID=730101"]
["chr6",52641631,52641631,3,1,"  assembly comparison","LOC730101|GeneID=730101"]
["chr6",53470414,53470414,1,1,"  assembly comparison","GCLC|GeneID=2729"]
["chr6",53624176,53624176,6,1,"  assembly comparison","KLHL31|GeneID=401265"]
["chr6",56588022,56588022,2,1,"  assembly comparison","DST|GeneID=667"]
["chr6",62448517,62448517,1,1,"  assembly comparison","KHDRBS2|GeneID=202559"]
["chr6",64045525,64045525,1,1,"  assembly comparison","LGSN|GeneID=51557"]
["chr6",64046580,64046580,1,1,"  assembly comparison","LGSN|GeneID=51557"]
["chr6",70974280,70974280,1,1,"  assembly comparison","COL19A1|GeneID=1310"]
["chr6",70977475,70977475,4,1,"  assembly comparison","COL19A1|GeneID=1310"]
["chr6",70983091,70983091,1,1,"  assembly comparison","COL9A1|GeneID=1297"]
["chr6",71355280,71355280,10,1,"  assembly comparison","C6orf57|GeneID=135154"]
["chr6",72068305,72068305,3,1,"  assembly comparison","OGFRL1|GeneID=79627"]
["chr6",72180953,72180953,4,1,"  assembly comparison","C6orf155|GeneID=79940"]
["chr6",75851860,75851860,4,1,"  assembly comparison","COL12A1|GeneID=1303"]
["chr6",79664881,79664881,24,1,"  assembly comparison","IRAK1BP1|GeneID=134728"]
["chr6",81110520,81110520,1,1,"  assembly comparison","BCKDHB|GeneID=594"]
["chr6",83977975,83977975,1,1,"  assembly comparison","ME1|GeneID=4199"]
["chr6",87781700,87781700,1,1,"  assembly comparison","HTR1E|GeneID=3354"]
["chr6",88028381,88028381,1,1,"  assembly comparison","ZNF292|GeneID=23036"]
["chr6",88170388,88176378,5204,1,"  mate pair","C6orf165|GeneID=154313"]
["chr6",88278484,88278484,4,1,"  assembly comparison","SLC35A1|GeneID=10559"]
["chr6",88441443,88441443,1,1,"  assembly comparison","AKIRIN2|GeneID=55122"]
["chr6",90132963,90132963,1,1,"  assembly comparison","RRAGD|GeneID=58528"]
["chr6",90398814,90398814,4,1,"  assembly comparison","ANKRD6|GeneID=22881/LYRM2|GeneID=57226"]
["chr6",90401506,90401506,1,1,"  assembly comparison","LYRM2|GeneID=57226"]
["chr6",90637207,90641546,3073,1,"  mate pair","CASP8AP2|GeneID=9994"]
["chr6",94007165,94007165,1,1,"  assembly comparison","EPHA7|GeneID=2045"]
["chr6",94474302,94474302,1,1,"  assembly comparison","TSG1|GeneID=643432"]
["chr6",96762879,96762879,1,1,"  assembly comparison","FUT9|GeneID=10690"]
["chr6",96763506,96763506,1,1,"  assembly comparison","FUT9|GeneID=10690"]
["chr6",97699663,97699663,2,1,"  assembly comparison","C6orf167|GeneID=253714"]
["chr6",99392289,99392289,1,1,"  assembly comparison","POU3F2|GeneID=5454"]
["chr6",99987200,99987200,2,1,"  assembly comparison","USP45|GeneID=85015"]
["chr6",101412500,101412500,2,1,"  assembly comparison","ASCC3|GeneID=10973"]
["chr6",105653472,105653472,1,1,"  assembly comparison","BVES|GeneID=11149"]
["chr6",105712585,105712585,4,1,"  assembly comparison","POPDC3|GeneID=64208"]
["chr6",106662267,106662267,7,1,"  assembly comparison","PRDM1|GeneID=639"]
["chr6",106663110,106663110,1,1,"  assembly comparison","PRDM1|GeneID=639"]
["chr6",106663681,106663681,1,1,"  assembly comparison","PRDM1|GeneID=639"]
["chr6",107581981,107581981,1,1,"  assembly comparison","PDSS2|GeneID=57107"]
["chr6",108296491,108296491,4,1,"  assembly comparison","SEC63|GeneID=11231"]
["chr6",109108661,109108661,1,1,"  assembly comparison","FOXO3|GeneID=2309"]
["chr6",109111598,109111598,1,1,"  assembly comparison","FOXO3|GeneID=2309"]
["chr6",109820093,109820093,2,1,"  assembly comparison","PPIL6|GeneID=285755"]
["chr6",110060799,110060799,8,1,"  assembly comparison","C6orf199|GeneID=221264"]
["chr6",111041121,111041121,2,1,"  assembly comparison","CDC2L6|GeneID=23097"]
["chr6",111650984,111650984,4,1,"  assembly comparison","SLC16A10|GeneID=117247"]
["chr6",112530389,112530389,1,1,"  assembly comparison","C6orf225|GeneID=619208"]
["chr6",114289483,114289483,1,1,"  assembly comparison","MARCKS|GeneID=4082"]
["chr6",118135650,118135650,2,1,"  assembly comparison","NUS1|GeneID=116150"]
["chr6",118135765,118135765,1,1,"  assembly comparison","NUS1|GeneID=116150"]
["chr6",118929685,118929685,2,1,"  assembly comparison","BRD7P3|GeneID=23629"]
["chr6",121811614,121811614,1,1,"  assembly comparison","GJA1|GeneID=2697"]
["chr6",122762528,122762528,12,1,"  assembly comparison","HSF2|GeneID=3298"]
["chr6",126292153,126292153,1,1,"  assembly comparison","NCOA7|GeneID=135112"]
["chr6",126341677,126341677,2,1,"  assembly comparison","HINT3|GeneID=135114"]
["chr6",127803542,127803542,1,1,"  assembly comparison","KIAA0408|GeneID=9729"]
["chr6",132253839,132253839,1,1,"  assembly comparison","ENPP1|GeneID=5167"]
["chr6",132256809,132256809,2,1,"  assembly comparison","ENPP1|GeneID=5167"]
["chr6",134252208,134252208,4,1,"  assembly comparison","TCF21|GeneID=6943"]
["chr6",134350478,134350478,2,1,"  assembly comparison","SLC2A12|GeneID=154091"]
["chr6",135326749,135326749,2,1,"  assembly comparison","HBS1L|GeneID=10767"]
["chr6",135581089,135581089,1,1,"  assembly comparison","MYB|GeneID=4602"]
["chr6",136052484,136052484,1,1,"  assembly comparison","C6orf217|GeneID=100131814"]
["chr6",137857080,137857080,1,1,"  assembly comparison","OLIG3|GeneID=167826"]
["chr6",138785945,138785945,1,1,"  assembly comparison","NHSL1|GeneID=57224"]
["chr6",139541345,139541345,1,1,"  assembly comparison","HECA|GeneID=51696"]
["chr6",139541439,139541439,1,1,"  assembly comparison","HECA|GeneID=51696"]
["chr6",143788608,143788608,2,1,"  assembly comparison","ADAT2|GeneID=134637"]
["chr6",143789965,143789965,5,1,"  assembly comparison","ADAT2|GeneID=134637"]
["chr6",144190023,144190023,2,1,"  assembly comparison","PHACTR2|GeneID=9749"]
["chr6",144303573,144303573,1,1,"  assembly comparison","PLAGL1|GeneID=5325"]
["chr6",144365729,144365729,2,1,"  assembly comparison","HYMAI|GeneID=57061"]
["chr6",144554375,144554375,1,1,"  assembly comparison","STX11|GeneID=8676"]
["chr6",146249199,146249199,1,1,"  assembly comparison","SHPRH|GeneID=257218"]
["chr6",147932064,147932064,1,1,"  assembly comparison","SAMD5|GeneID=389432"]
["chr6",150765742,150765742,15,1,"  assembly comparison","IYD|GeneID=389434"]
["chr6",151228576,151228576,6,1,"  assembly comparison","MTHFD1L|GeneID=25902"]
["chr6",151715814,151715814,3,1,"  assembly comparison","AKAP12|GeneID=9590"]
["chr6",151720465,151720465,1,1,"  assembly comparison","AKAP12|GeneID=9590"]
["chr6",151720505,151720505,1,1,"  assembly comparison","AKAP12|GeneID=9590"]
["chr6",151720524,151720524,1,1,"  assembly comparison","AKAP12|GeneID=9590"]
["chr6",151767702,151767702,4,1,"  assembly comparison","RMND1|GeneID=55005"]
["chr6",151897591,151899497,5266,1,"  mate pair","C6orf97|GeneID=80129"]
["chr6",151981853,151981853,6,1,"  assembly comparison","C6orf97|GeneID=80129"]
["chr6",151983034,151983034,1,1,"  assembly comparison","C6orf97|GeneID=80129"]
["chr6",151983640,151983640,1,1,"  assembly comparison","C6orf97|GeneID=80129"]
["chr6",152463615,152463615,1,1,"  assembly comparison","ESR1|GeneID=2099"]
["chr6",153333927,153333927,1,1,"  assembly comparison","FBXO5|GeneID=26271"]
["chr6",153351362,153351362,2,1,"  assembly comparison","MTRF1L|GeneID=54516"]
["chr6",153352044,153352044,1,1,"  assembly comparison","MTRF1L|GeneID=54516"]
["chr6",158438874,158438874,1,1,"  assembly comparison","SYNJ2|GeneID=8871"]
["chr6",158653704,158653704,1,1,"  assembly comparison","TULP4|GeneID=56995"]
["chr6",158849923,158849923,2,1,"  assembly comparison","TULP4|GeneID=56995"]
["chr6",158852424,158852424,1,1,"  assembly comparison","TULP4|GeneID=56995"]
["chr6",158975183,158975183,4,1,"  assembly comparison","TMEM181|GeneID=57583"]
["chr6",160435938,160435938,1,1,"  assembly comparison","LOC729603|GeneID=729603"]
["chr6",160446961,160446961,2,1,"  assembly comparison","IGF2R|GeneID=3482"]
["chr6",163912750,163912750,1,1,"  assembly comparison","QKI|GeneID=9444"]
["chr6",167373521,167373521,1,1,"  assembly comparison","FGFR1OP|GeneID=11116"]
["chr6",167472427,167472427,1,1,"  assembly comparison","CCR6|GeneID=1235"]
["chr6",167940236,167940236,23,1,"  assembly comparison","C6orf123|GeneID=26238"]
["chr6",167940263,167940263,23,1,"  split read","C6orf123|GeneID=26238"]
["chr6",168119714,168119714,340,1,"  assembly comparison","HGC6.3|GeneID=100128124"]
["chr6",168200167,168200167,3,1,"  assembly comparison","FRMD1|GeneID=79981"]
["chr6",169358533,169358533,1,1,"  assembly comparison","THBS2|GeneID=7058"]
["chr6",169358624,169358624,1,1,"  assembly comparison","THBS2|GeneID=7058"]
["chr6",169809771,169810437,6300,1,"  mate pair","WDR27|GeneID=253769"]
["chr6",170712964,170712964,3,1,"  assembly comparison","TBP|GeneID=6908"]
["chr6",170712971,170712971,6,1,"  assembly comparison","TBP|GeneID=6908"]
["chr11",197383,197383,21,1,"  assembly comparison","BET1L|GeneID=51272"]
["chr11",203343,203343,37,1,"  assembly comparison","RIC8A|GeneID=60626"]
["chr11",281680,282918,1239,1,"  Agilent 24M","ATHL1|GeneID=80162"]
["chr11",480805,480805,20,1,"  assembly comparison","PTDSS2|GeneID=81490"]
["chr11",492129,492129,15,1,"  assembly comparison","RNH1|GeneID=6050"]
["chr11",737448,737448,3,1,"  assembly comparison","TALDO1|GeneID=6888"]
["chr11",814998,814998,1,1,"  assembly comparison","PNPLA2|GeneID=57104"]
["chr11",829767,829767,2,1,"  assembly comparison","POLR2L|GeneID=5441"]
["chr11",1003383,1008560,11009,1,"  mate pair","MUC6|GeneID=4588"]
["chr11",1008011,1008011,504,1,"  assembly comparison","MUC6|GeneID=4588"]
["chr11",1068543,1071853,4846,1,"  mate pair","MUC2|GeneID=4583"]
["chr11",1082795,1082795,846,1,"  assembly comparison","MUC2|GeneID=4583"]
["chr11",1427628,1427628,1,1,"  assembly comparison","BRSK2|GeneID=9024"]
["chr11",1439700,1439700,2,1,"  assembly comparison","BRSK2|GeneID=9024"]
["chr11",1607783,1607783,12,1,"  assembly comparison","KRTAP5-5|GeneID=439915"]
["chr11",1906509,1917664,17245,1,"  mate pair","TNNT3|GeneID=7140"]
["chr11",2109862,2109862,19,1,"  assembly comparison","IGF2|GeneID=3481/INS-IGF2|GeneID=723961"]
["chr11",2619670,2620776,2460,1,"  mate pair","KCNQ1OT1|GeneID=10984"]
["chr11",2645411,2645411,1,1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2658139,2658139,1,1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2660313,2660313,4,1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2660936,2660936,1,1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2881427,2881427,1,1,"  assembly comparison","SLC22A18AS|GeneID=5003"]
["chr11",3065611,3065611,11,1,"  assembly comparison","OSBPL5|GeneID=114879"]
["chr11",3065862,3065862,1,1,"  assembly comparison","OSBPL5|GeneID=114879"]
["chr11",3618164,3618164,3,1,"  assembly comparison","ART5|GeneID=116969"]
["chr11",3803540,3803540,1,1,"  assembly comparison","FRAG1|GeneID=27315"]
["chr11",4549285,4549285,2,1,"  assembly comparison","C11orf40|GeneID=143501"]
["chr11",5432009,5432009,2,1,"  assembly comparison","OR51I2|GeneID=390064"]
["chr11",5467118,5467118,4,1,"  assembly comparison","OR52D1|GeneID=390066"]
["chr11",5644184,5644184,1,1,"  assembly comparison","TRIMP1|GeneID=117852"]
["chr11",5741435,5765791,24357,1,"  NimbleGen 42M","OR52N5|GeneID=390075/OR52N1|GeneID=79473"]
["chr11",6368510,6368510,13,1,"  split read","SMPD1|GeneID=6609"]
["chr11",6368547,6368547,12,1,"  assembly comparison","SMPD1|GeneID=6609"]
["chr11",6388983,6388983,1,1,"  assembly comparison","APBB1|GeneID=322"]
["chr11",6524482,6524482,12,1,"  assembly comparison","DNHD1|GeneID=144132"]
["chr11",6690958,6690958,1,1,"  assembly comparison","GVIN1|GeneID=387751"]
["chr11",6977349,6977349,5,1,"  assembly comparison","ZNF214|GeneID=7761"]
["chr11",6977382,6977382,1,1,"  assembly comparison","ZNF214|GeneID=7761"]
["chr11",8666075,8666075,2,1,"  assembly comparison","RPL27A|GeneID=6157"]
["chr11",8959418,8959418,1,1,"  assembly comparison","NRIP3|GeneID=56675"]
["chr11",9138985,9138985,1,1,"  assembly comparison","DENND5A|GeneID=23258"]
["chr11",9423511,9423511,1,1,"  assembly comparison","IPO7|GeneID=10527"]
["chr11",9729844,9729844,23,1,"  assembly comparison","SWAP70|GeneID=23075"]
["chr11",10553882,10553882,1,1,"  assembly comparison","MRVI1|GeneID=10335"]
["chr11",12336708,12336708,2,1,"  assembly comparison","MICALCL|GeneID=84953"]
["chr11",12922078,12922078,1,1,"  assembly comparison","TEAD1|GeneID=7003"]
["chr11",12922619,12922619,1,1,"  assembly comparison","TEAD1|GeneID=7003"]
["chr11",14058070,14058070,1,1,"  assembly comparison","SPON1|GeneID=10418"]
["chr11",14245575,14245575,1,1,"  assembly comparison","SPON1|GeneID=10418"]
["chr11",14253655,14256941,2923,1,"  mate pair","RRAS2|GeneID=22800"]
["chr11",17472036,17472036,4,1,"  assembly comparison","USH1C|GeneID=10083"]
["chr11",17760099,17760099,1,1,"  assembly comparison","KCNC1|GeneID=3746"]
["chr11",18187777,18187777,1,1,"  assembly comparison","LOC494141|GeneID=494141"]
["chr11",18434543,18434543,2,1,"  assembly comparison","LDHAL6A|GeneID=160287"]
["chr11",18434688,18434688,2,1,"  assembly comparison","LDHAL6A|GeneID=160287"]
["chr11",20096710,20096710,1,1,"  assembly comparison","NAV2|GeneID=89797"]
["chr11",22171459,22171459,24,1,"  assembly comparison","ANO5|GeneID=203859"]
["chr11",22356689,22356689,2,1,"  assembly comparison","SLC17A6|GeneID=57084"]
["chr11",22601476,22601476,1,1,"  assembly comparison","FANCF|GeneID=2188"]
["chr11",22790568,22790568,3,1,"  assembly comparison","GAS2|GeneID=2620"]
["chr11",25059172,25059172,1,1,"  assembly comparison","LUZP2|GeneID=338645"]
["chr11",26537998,26537998,2,1,"  assembly comparison","MUC15|GeneID=143662"]
["chr11",26647195,26647195,2,1,"  assembly comparison","SLC5A12|GeneID=159963"]
["chr11",26647317,26647317,30,1,"  assembly comparison","SLC5A12|GeneID=159963"]
["chr11",27474135,27474135,1,1,"  assembly comparison","LIN7C|GeneID=55327"]
["chr11",28311076,28311076,8,1,"  assembly comparison","METT5D1|GeneID=196074"]
["chr11",30309049,30309049,2,1,"  assembly comparison","C11orf46|GeneID=120534"]
["chr11",31764812,31764812,4,1,"  assembly comparison","PAX6|GeneID=5080"]
["chr11",31765165,31765165,4,1,"  assembly comparison","PAX6|GeneID=5080"]
["chr11",32417609,32417609,2,1,"  assembly comparison","WIT1|GeneID=51352"]
["chr11",33057248,33057248,1,1,"  assembly comparison","LOC283267|GeneID=283267"]
["chr11",33621497,33624330,2177,1,"  mate pair","C11orf41|GeneID=25758"]
["chr11",33649739,33649739,6,1,"  assembly comparison","C11orf41|GeneID=25758"]
["chr11",35786333,35786333,1,1,"  assembly comparison","TRIM44|GeneID=54765"]
["chr11",35786351,35786351,6,1,"  assembly comparison","TRIM44|GeneID=54765"]
["chr11",44911176,44911176,19,1,"  assembly comparison","TP53I11|GeneID=9537"]
["chr11",45909042,45909042,1,1,"  assembly comparison","PHF21A|GeneID=51317"]
["chr11",45909402,45909402,2,1,"  assembly comparison","PHF21A|GeneID=51317"]
["chr11",46298837,46298837,1,1,"  assembly comparison","CREB3L1|GeneID=90993"]
["chr11",47393866,47393866,1,1,"  assembly comparison","SLC39A13|GeneID=91252"]
["chr11",47745245,47745245,6,1,"  assembly comparison","FNBP4|GeneID=23360"]
["chr11",48148897,48148897,1,1,"  assembly comparison","PTPRJ|GeneID=5795"]
["chr11",56894118,56894118,1,1,"  assembly comparison","P2RX3|GeneID=5024"]
["chr11",57228830,57228830,1,1,"  assembly comparison","MED19|GeneID=219541"]
["chr11",58142625,58142625,2,1,"  assembly comparison","ZFP91|GeneID=80829"]
["chr11",58233425,58233425,6,1,"  assembly comparison","GLYAT|GeneID=10249"]
["chr11",58677918,58677918,2,1,"  assembly comparison","FAM111A|GeneID=63901"]
["chr11",58730579,58730579,6,1,"  assembly comparison","DTX4|GeneID=23220"]
["chr11",59918107,59918107,1,1,"  assembly comparison","MS4A7|GeneID=58475"]
["chr11",60300460,60300460,1,1,"  assembly comparison","MS4A15|GeneID=219995"]
["chr11",60414648,60414648,1,1,"  assembly comparison","PRPF19|GeneID=27339"]
["chr11",60651411,60651411,12,1,"  assembly comparison","CD5|GeneID=921"]
["chr11",60872398,60872398,5,1,"  assembly comparison","DAK|GeneID=26007"]
["chr11",61039567,61039567,1,1,"  assembly comparison","SYT7|GeneID=9066"]
["chr11",61161754,61161754,1,1,"  assembly comparison","RPLP0P2|GeneID=113157"]
["chr11",61162174,61162174,4,1,"  assembly comparison","RPLP0P2|GeneID=113157"]
["chr11",61648014,61649050,1037,1,"  Agilent 24M","INCENP|GeneID=3619"]
["chr11",62137659,62137659,1,1,"  assembly comparison","ROM1|GeneID=6094"]
["chr11",63463018,63463018,1,1,"  assembly comparison","NAT11|GeneID=79829"]
["chr11",63642642,63642642,1,1,"  assembly comparison","FLRT1|GeneID=23769"]
["chr11",64936390,64936390,1,1,"  assembly comparison","FRMD8|GeneID=83786"]
["chr11",65026482,65026482,1,1,"  assembly comparison","MALAT1|GeneID=378938"]
["chr11",65081932,65081932,6,1,"  assembly comparison","LTBP3|GeneID=4054"]
["chr11",65159372,65159372,1,1,"  assembly comparison","PCNXL3|GeneID=399909"]
["chr11",65161442,65161442,1,1,"  assembly comparison","PCNXL3|GeneID=399909"]
["chr11",66116935,66116935,1,1,"  assembly comparison","CCDC87|GeneID=55231"]
["chr11",66152564,66152564,3,1,"  assembly comparison","RBM14|GeneID=10432"]
["chr11",66268892,66268892,3,1,"  assembly comparison","C11orf80|GeneID=79703"]
["chr11",66367406,66367406,5,1,"  assembly comparison","C11orf80|GeneID=79703"]
["chr11",66916001,66916001,6,1,"  assembly comparison","RAD9A|GeneID=5883"]
["chr11",66921793,66921793,2,1,"  assembly comparison","RAD9A|GeneID=5883"]
["chr11",66948907,66948907,12,1,"  split read","ATPGD1|GeneID=57571"]
["chr11",66948939,66948939,12,1,"  assembly comparison","ATPGD1|GeneID=57571"]
["chr11",67316218,67316218,1,1,"  assembly comparison","LOC645332|GeneID=645332"]
["chr11",67521740,67521740,1,1,"  assembly comparison","UNC93B1|GeneID=81622"]
["chr11",67542641,67542641,1,1,"  assembly comparison","ALDH3B1|GeneID=221"]
["chr11",67545870,67545870,1,1,"  assembly comparison","ALDH3B1|GeneID=221"]
["chr11",67551956,67551956,1,1,"  assembly comparison","ALDH3B1|GeneID=221"]
["chr11",67552736,67552736,2,1,"  assembly comparison","ALDH3B1|GeneID=221"]
["chr11",68280177,68280177,1,1,"  assembly comparison","CPT1A|GeneID=1374"]
["chr11",68427859,68427859,14,1,"  split read","MRPL21|GeneID=219927"]
["chr11",69176753,69176753,2,1,"  assembly comparison","CCND1|GeneID=595"]
["chr11",69712649,69712649,1,1,"  assembly comparison","ANO1|GeneID=55107"]
["chr11",69887948,69898823,11118,1,"  mate pair","PPFIA1|GeneID=8500"]
["chr11",70954328,70954328,21,1,"  assembly comparison","KRTAP5-10|GeneID=387273"]
["chr11",70955299,70955299,4,1,"  assembly comparison","KRTAP5-10|GeneID=387273"]
["chr11",71391106,71391106,1,1,"  assembly comparison","IL18BP|GeneID=10068"]
["chr11",73065187,73065187,1,1,"  assembly comparison","RAB6A|GeneID=5870"]
["chr11",73357700,73362099,4400,1,"  NimbleGen 42M","DNAJB13|GeneID=374407"]
["chr11",73389139,73389139,1,1,"  assembly comparison","UCP3|GeneID=7352"]
["chr11",73389171,73389171,1,1,"  assembly comparison","UCP3|GeneID=7352"]
["chr11",73844429,73844429,1,1,"  assembly comparison","KCNE3|GeneID=10008"]
["chr11",73844873,73844873,10,1,"  assembly comparison","KCNE3|GeneID=10008"]
["chr11",74031347,74031347,2,1,"  assembly comparison","POLD3|GeneID=10714"]
["chr11",74395737,74395737,2,1,"  assembly comparison","NEU3|GeneID=10825"]
["chr11",75939061,75939061,1,1,"  assembly comparison","C11orf30|GeneID=56946"]
["chr11",76514334,76514334,2,1,"  assembly comparison","CAPN5|GeneID=726"]
["chr11",76605527,76605527,3,1,"  assembly comparison","GDPD4|GeneID=220032"]
["chr11",82845356,82845356,1,1,"  assembly comparison","DLG2|GeneID=1740"]
["chr11",82847041,82847041,1,1,"  assembly comparison","DLG2|GeneID=1740"]
["chr11",85083416,85083416,1,1,"  assembly comparison","SYTL2|GeneID=54843"]
["chr11",87697372,87697372,1,1,"  assembly comparison","CTSC|GeneID=1075"]
["chr11",89573479,89573479,2,1,"  assembly comparison","CHORDC1|GeneID=26973"]
["chr11",92268754,92268754,2,1,"  assembly comparison","FAT3|GeneID=120114"]
["chr11",92810566,92810566,1,1,"  assembly comparison","CCDC67|GeneID=159989"]
["chr11",93094515,93094515,2,1,"  assembly comparison","SCARNA9|GeneID=619383"]
["chr11",93103374,93103374,2,1,"  assembly comparison","SNORA25|GeneID=684959"]
["chr11",93114219,93114219,6,1,"  assembly comparison","TAF1D|GeneID=79101"]
["chr11",93921074,93921074,1,1,"  assembly comparison","FUT4|GeneID=2526"]
["chr11",94245896,94245896,1,1,"  assembly comparison","AMOTL1|GeneID=154810"]
["chr11",94246568,94246568,1,1,"  assembly comparison","AMOTL1|GeneID=154810"]
["chr11",94339156,94339156,1,1,"  assembly comparison","CWC15|GeneID=51503"]
["chr11",94370061,94370061,1,1,"  assembly comparison","JMJD2D|GeneID=55693"]
["chr11",94440551,94440551,1,1,"  assembly comparison","SFRS2B|GeneID=10929"]
["chr11",94441282,94441282,1,1,"  assembly comparison","SFRS2B|GeneID=10929"]
["chr11",94443179,94443179,1,1,"  assembly comparison","SFRS2B|GeneID=10929"]
["chr11",94443195,94443195,4,1,"  assembly comparison","SFRS2B|GeneID=10929"]
["chr11",94503146,94503146,1,1,"  assembly comparison","ENDOD1|GeneID=23052"]
["chr11",99195057,99196958,3062,1,"  mate pair","CNTN5|GeneID=53942"]
["chr11",99195223,99195849,627,1,"  Agilent 24M","CNTN5|GeneID=53942"]
["chr11",100368813,100368813,8,1,"  assembly comparison","TMEM133|GeneID=83935"]
["chr11",100505050,100505050,1,1,"  assembly comparison","PGR|GeneID=5241"]
["chr11",100828187,100828187,4,1,"  assembly comparison","TRPC6|GeneID=7225"]
["chr11",101374551,101374551,11,1,"  assembly comparison","KIAA1377|GeneID=57562"]
["chr11",102244004,102244004,1,1,"  assembly comparison","MMP12|GeneID=4321"]
["chr11",102319216,102319216,1,1,"  assembly comparison","MMP13|GeneID=4322"]
["chr11",105356207,105356207,1,1,"  assembly comparison","GRIA4|GeneID=2893"]
["chr11",105357528,105357528,6,1,"  assembly comparison","GRIA4|GeneID=2893"]
["chr11",105427701,105427701,1,1,"  assembly comparison","KBTBD3|GeneID=143879"]
["chr11",107883966,107883966,1,1,"  assembly comparison","EXPH5|GeneID=23086"]
["chr11",109672465,109672465,1,1,"  assembly comparison","RDX|GeneID=5962"]
["chr11",109953418,109953418,1,1,"  assembly comparison","ARHGAP20|GeneID=57569"]
["chr11",111142363,111142363,18,1,"  assembly comparison","PPP2R1B|GeneID=5519"]
["chr11",111250539,111250539,2,1,"  assembly comparison","FDXACB1|GeneID=91893"]
["chr11",111358318,111358318,1,1,"  assembly comparison","DIXDC1|GeneID=85458"]
["chr11",111439095,111439095,1,1,"  assembly comparison","DLAT|GeneID=1737"]
["chr11",112337518,112337518,1,1,"  assembly comparison","NCAM1|GeneID=4684"]
["chr11",112653781,112653781,4,1,"  assembly comparison","NCAM1|GeneID=4684"]
["chr11",114549630,114549630,1,1,"  assembly comparison","CADM1|GeneID=23705"]
["chr11",116166505,116166505,1,1,"  assembly comparison","APOA5|GeneID=116519"]
["chr11",117539638,117539638,4,1,"  assembly comparison","SCN2B|GeneID=6327"]
["chr11",117541061,117541061,1,1,"  assembly comparison","SCN2B|GeneID=6327"]
["chr11",118034254,118034254,1,1,"  assembly comparison","TREH|GeneID=11181"]
["chr11",118125300,118125300,2,1,"  assembly comparison","DDX6|GeneID=1656"]
["chr11",118127037,118127037,1,1,"  assembly comparison","DDX6|GeneID=1656"]
["chr11",118127100,118127100,1,1,"  assembly comparison","DDX6|GeneID=1656"]
["chr11",118286813,118286813,1,1,"  assembly comparison","BCL9L|GeneID=283149"]
["chr11",118379059,118379059,1,1,"  assembly comparison","LOC649946|GeneID=649946"]
["chr11",118379072,118379072,1,1,"  assembly comparison","LOC649946|GeneID=649946"]
["chr11",118379120,118379120,1,1,"  assembly comparison","LOC649946|GeneID=649946"]
["chr11",118394457,118394457,1,1,"  assembly comparison","TRAPPC4|GeneID=51399"]
["chr11",118445151,118445151,1,1,"  assembly comparison","VPS11|GeneID=55823"]
["chr11",118537054,118537054,1,1,"  assembly comparison","ABCG4|GeneID=64137"]
["chr11",118731985,118731985,1,1,"  assembly comparison","USP2|GeneID=9099"]
["chr11",119038954,119038954,5,1,"  assembly comparison","PVRL1|GeneID=5818"]
["chr11",121007284,121007284,5,1,"  assembly comparison","SORL1|GeneID=6653"]
["chr11",122188161,122188161,6,1,"  assembly comparison","UBASH3B|GeneID=84959"]
["chr11",122434162,122434162,1,1,"  assembly comparison","LOC85391|GeneID=85391"]
["chr11",124007706,124007706,1,1,"  assembly comparison","TBRG1|GeneID=84897"]
["chr11",124957513,124957513,1,1,"  assembly comparison","EI24|GeneID=9538"]
["chr11",125000419,125000419,1,1,"  assembly comparison","CHEK1|GeneID=1111"]
["chr11",125030800,125030800,4,1,"  assembly comparison","CHEK1|GeneID=1111"]
["chr11",125123940,125123940,2,1,"  assembly comparison","PATE1|GeneID=160065"]
["chr11",125266538,125266538,2,1,"  assembly comparison","HYLS1|GeneID=219844"]
["chr11",125333701,125333701,6,1,"  assembly comparison","CDON|GeneID=50937"]
["chr11",128266566,128266566,4,1,"  assembly comparison","KCNJ5|GeneID=3762"]
["chr11",128292214,128292214,1,1,"  assembly comparison","KCNJ5|GeneID=3762"]
["chr11",128293159,128293159,1,1,"  assembly comparison","KCNJ5|GeneID=3762"]
["chr11",129275480,129275480,6,1,"  assembly comparison","PRDM10|GeneID=56980"]
["chr11",129379555,129379555,1,1,"  assembly comparison","NCRNA00167|GeneID=440072"]
["chr11",133694076,133694076,1,1,"  assembly comparison","GLB1L3|GeneID=112937"]
["chr11",133751281,133751281,1,1,"  assembly comparison","GLB1L2|GeneID=89944"]
["chr17",161937,178154,11504,1,"  mate pair","RPH3AL|GeneID=9501"]
["chr17",263712,263712,30,1,"  assembly comparison","C17orf97|GeneID=400566"]
["chr17",368282,368282,1,1,"  assembly comparison","VPS53|GeneID=55275"]
["chr17",368783,368783,1,1,"  assembly comparison","VPS53|GeneID=55275"]
["chr17",1150517,1150517,2,1,"  assembly comparison","TUSC5|GeneID=286753"]
["chr17",1314859,1314859,2,1,"  assembly comparison","MYO1C|GeneID=4641"]
["chr17",1561566,1561566,4,1,"  assembly comparison","C17orf91|GeneID=84981"]
["chr17",1604729,1604729,1,1,"  assembly comparison","SERPINF2|GeneID=5345"]
["chr17",1749336,1749336,24,1,"  assembly comparison","RPA1|GeneID=6117"]
["chr17",1785756,1785756,4,1,"  assembly comparison","RTN4RL1|GeneID=146760"]
["chr17",1911519,1911519,1,1,"  assembly comparison","SMG6|GeneID=23293"]
["chr17",2234671,2234671,6,1,"  assembly comparison","MNT|GeneID=4335"]
["chr17",2267129,2267129,11,1,"  assembly comparison","METT10D|GeneID=79066"]
["chr17",3423920,3423920,1,1,"  assembly comparison","TRPV1|GeneID=7442"]
["chr17",3511460,3511460,1,1,"  assembly comparison","CTNS|GeneID=1497"]
["chr17",3511470,3511470,1,1,"  assembly comparison","CTNS|GeneID=1497"]
["chr17",3512794,3512794,1,1,"  assembly comparison","CTNS|GeneID=1497"]
["chr17",3746909,3746909,1,1,"  assembly comparison","P2RX1|GeneID=5023"]
["chr17",4044523,4044523,1,1,"  assembly comparison","ANKFY1|GeneID=51479"]
["chr17",4120593,4120593,1,1,"  assembly comparison","UBE2G1|GeneID=7326"]
["chr17",4120695,4120695,1,1,"  assembly comparison","UBE2G1|GeneID=7326"]
["chr17",4122305,4122305,4,1,"  assembly comparison","UBE2G1|GeneID=7326"]
["chr17",4383431,4383883,453,1,"  Agilent 24M","SPNS2|GeneID=124976"]
["chr17",4457921,4457921,1,1,"  assembly comparison","SMTNL2|GeneID=342527"]
["chr17",4633213,4633213,13,1,"  assembly comparison","TM4SF5|GeneID=9032"]
["chr17",6298804,6298804,1,1,"  assembly comparison","PITPNM3|GeneID=83394"]
["chr17",6496272,6496272,1,1,"  assembly comparison","C17orf100|GeneID=388327"]
["chr17",6496922,6496922,5,1,"  assembly comparison","C17orf100|GeneID=388327"]
["chr17",6529023,6529023,1,1,"  assembly comparison","SLC13A5|GeneID=284111"]
["chr17",6868773,6868773,3,1,"  assembly comparison","BCL6B|GeneID=255877"]
["chr17",6872478,6872478,52,1,"  split read","BCL6B|GeneID=255877"]
["chr17",6872531,6872531,52,1,"  assembly comparison","BCL6B|GeneID=255877"]
["chr17",7017509,7017509,1,1,"  assembly comparison","ASGR1|GeneID=432"]
["chr17",7088076,7088076,1,1,"  assembly comparison","DULLARD|GeneID=23399"]
["chr17",7156152,7156152,2,1,"  assembly comparison","EIF5A|GeneID=1984"]
["chr17",7156172,7156172,2,1,"  assembly comparison","EIF5A|GeneID=1984"]
["chr17",7198599,7198599,6,1,"  assembly comparison","KCTD11|GeneID=147040"]
["chr17",7283517,7283517,1,1,"  assembly comparison","FGF11|GeneID=2256"]
["chr17",7304154,7304154,1,1,"  assembly comparison","ZBTB4|GeneID=57659"]
["chr17",7500893,7500893,2,1,"  assembly comparison","ATP1B2|GeneID=482"]
["chr17",7690941,7690941,6,1,"  assembly comparison","JMJD3|GeneID=23135"]
["chr17",7697739,7697739,1,1,"  assembly comparison","JMJD3|GeneID=23135"]
["chr17",7698458,7698458,1,1,"  assembly comparison","JMJD3|GeneID=23135"]
["chr17",7704886,7704886,1,1,"  assembly comparison","CYB5D1|GeneID=124637"]
["chr17",8004422,8004422,12,1,"  split read","VAMP2|GeneID=6844"]
["chr17",8004423,8004423,1,1,"  assembly comparison","VAMP2|GeneID=6844"]
["chr17",8004448,8004448,12,1,"  assembly comparison","VAMP2|GeneID=6844"]
["chr17",8202819,8202819,2,1,"  assembly comparison","LOC100128288|GeneID=100128288"]
["chr17",8665941,8665941,1,1,"  assembly comparison","PIK3R6|GeneID=146850"]
["chr17",10559254,10559254,1,1,"  assembly comparison","TMEM220|GeneID=388335"]
["chr17",10574046,10574046,1,1,"  assembly comparison","TMEM220|GeneID=388335"]
["chr17",15284255,15284255,3,1,"  assembly comparison","CDRT4|GeneID=284040"]
["chr17",15346340,15346340,2,1,"  assembly comparison","FAM18B2|GeneID=201158"]
["chr17",15346871,15346871,2,1,"  assembly comparison","FAM18B2|GeneID=201158"]
["chr17",15632179,15632179,2,1,"  assembly comparison","MEIS3P1|GeneID=4213"]
["chr17",15821747,15821747,1,1,"  assembly comparison","ZSWIM7|GeneID=125150"]
["chr17",15872798,15872798,2,1,"  assembly comparison","TTC19|GeneID=54902"]
["chr17",16285615,16285615,1,1,"  assembly comparison","C17orf45|GeneID=125144"]
["chr17",16286797,16286797,1,1,"  assembly comparison","C17orf76|GeneID=388341"]
["chr17",16618652,16618652,1,1,"  assembly comparison","CCDC144A|GeneID=9720"]
["chr17",17655460,17655460,1,1,"  assembly comparison","RAI1|GeneID=10743"]
["chr17",17912424,17912424,2,1,"  assembly comparison","C17orf39|GeneID=79018"]
["chr17",18118737,18118737,1,1,"  assembly comparison","TOP3A|GeneID=7156"]
["chr17",18815413,18815413,3,1,"  assembly comparison","FAM83G|GeneID=644815"]
["chr17",19256678,19256678,1,1,"  assembly comparison","RNF112|GeneID=7732"]
["chr17",19617937,19617937,1,1,"  assembly comparison","ULK2|GeneID=9706"]
["chr17",19619488,19619488,1,1,"  assembly comparison","ULK2|GeneID=9706"]
["chr17",20158605,20158605,1,1,"  assembly comparison","CYTSB|GeneID=92521"]
["chr17",20846857,20846857,1,1,"  assembly comparison","USP22|GeneID=23326"]
["chr17",21083326,21083326,2,1,"  assembly comparison","MGC33894|GeneID=256302"]
["chr17",21220708,21220708,1,1,"  assembly comparison","KCNJ12|GeneID=3768"]
["chr17",21263200,21263200,2,1,"  assembly comparison","KCNJ12|GeneID=3768"]
["chr17",23696074,23696074,1,1,"  assembly comparison","TNFAIP1|GeneID=7126"]
["chr17",23696488,23696488,1,1,"  assembly comparison","TNFAIP1|GeneID=7126"]
["chr17",23708518,23708518,1,1,"  assembly comparison","POLDIP2|GeneID=26073"]
["chr17",23708657,23708657,2,1,"  assembly comparison","POLDIP2|GeneID=26073"]
["chr17",23716353,23716353,1,1,"  assembly comparison","SEBOX|GeneID=645832"]
["chr17",23723322,23723322,1,1,"  assembly comparison","SARM1|GeneID=23098"]
["chr17",23723326,23723326,1,1,"  assembly comparison","SARM1|GeneID=23098"]
["chr17",23723495,23723495,1,1,"  assembly comparison","SARM1|GeneID=23098"]
["chr17",23746178,23746178,1,1,"  assembly comparison","SLC46A1|GeneID=113235"]
["chr17",23749003,23749003,3,1,"  assembly comparison","SLC46A1|GeneID=113235/SARM1|GeneID=23098"]
["chr17",23904821,23904821,2,1,"  assembly comparison","PIGS|GeneID=94005"]
["chr17",24108534,24108534,1,1,"  assembly comparison","C17orf63|GeneID=55731"]
["chr17",24110581,24110581,1,1,"  assembly comparison","C17orf63|GeneID=55731"]
["chr17",24610744,24610744,1,1,"  assembly comparison","NUFIP2|GeneID=57532"]
["chr17",24925664,24925664,1,1,"  assembly comparison","GIT1|GeneID=28964"]
["chr17",24979225,24979225,2,1,"  assembly comparison","SSH2|GeneID=85464"]
["chr17",27501587,27501587,1,1,"  assembly comparison","ARGFXP2|GeneID=503640"]
["chr17",27502115,27502115,3,1,"  assembly comparison","ARGFXP2|GeneID=503640"]
["chr17",27674919,27674919,1,1,"  assembly comparison","RHBDL3|GeneID=162494"]
["chr17",28343059,28343059,3,1,"  assembly comparison","SPACA3|GeneID=124912"]
["chr17",30361211,30361211,3,1,"  assembly comparison","RFFL|GeneID=117584"]
["chr17",30361893,30361893,2,1,"  assembly comparison","RFFL|GeneID=117584"]
["chr17",30372577,30372577,1,1,"  assembly comparison","RFFL|GeneID=117584"]
["chr17",30617274,30617274,4,1,"  assembly comparison","SLFN5|GeneID=162394"]
["chr17",30617310,30617310,6,1,"  assembly comparison","SLFN5|GeneID=162394"]
["chr17",30703320,30703320,1,1,"  assembly comparison","SLFN11|GeneID=91607"]
["chr17",30789239,30789239,1,1,"  assembly comparison","SLFN13|GeneID=146857"]
["chr17",30790626,30790626,3,1,"  assembly comparison","SLFN13|GeneID=146857"]
["chr17",30791359,30791359,2,1,"  assembly comparison","SLFN13|GeneID=146857"]
["chr17",30926035,30926035,4,1,"  assembly comparison","PEX12|GeneID=5193"]
["chr17",31124463,31124463,1,1,"  assembly comparison","MMP28|GeneID=79148"]
["chr17",34328814,34328814,15,1,"  assembly comparison","LASP1|GeneID=3927"]
["chr17",34475191,34475191,1,1,"  assembly comparison","PLXDC1|GeneID=57125"]
["chr17",34620436,34620436,1,1,"  assembly comparison","STAC2|GeneID=342667"]
["chr17",34621068,34621068,1,1,"  assembly comparison","STAC2|GeneID=342667"]
["chr17",34621081,34621081,1,1,"  assembly comparison","STAC2|GeneID=342667"]
["chr17",35014570,35014570,1,1,"  assembly comparison","NEUROD2|GeneID=4761"]
["chr17",35550128,35550128,4,1,"  assembly comparison","CASC3|GeneID=22794"]
["chr17",35587886,35587886,1,1,"  assembly comparison","RAPGEFL1|GeneID=51195"]
["chr17",35604068,35604068,6,1,"  assembly comparison","RAPGEFL1|GeneID=51195"]
["chr17",35689649,35689649,1,1,"  assembly comparison","WIPF2|GeneID=147179"]
["chr17",35691889,35691889,1,1,"  assembly comparison","WIPF2|GeneID=147179"]
["chr17",36176256,36176256,2,1,"  assembly comparison","KRT26|GeneID=353288"]
["chr17",36559310,36559310,15,1,"  assembly comparison","KRTAP4-5|GeneID=85289"]
["chr17",37212072,37212072,1,1,"  assembly comparison","SC65|GeneID=10609"]
["chr17",37382015,37382015,1,1,"  assembly comparison","CNP|GeneID=1267/DNAJC7|GeneID=7266"]
["chr17",37986596,37986596,6,1,"  assembly comparison","FAM134C|GeneID=162427"]
["chr17",38318196,38318196,1,1,"  assembly comparison","G6PC|GeneID=2538"]
["chr17",38419852,38419852,1,1,"  assembly comparison","IFI35|GeneID=3430"]
["chr17",38450364,38450364,2,1,"  assembly comparison","BRCA1|GeneID=672"]
["chr17",38718490,38718490,1,1,"  assembly comparison","NBR1|GeneID=4077"]
["chr17",39186969,39186969,1,1,"  assembly comparison","SOST|GeneID=50964"]
["chr17",39309571,39309571,4,1,"  assembly comparison","MPP2|GeneID=4355"]
["chr17",39468588,39468588,1,1,"  assembly comparison","LSM12|GeneID=124801"]
["chr17",39625105,39625105,1,1,"  assembly comparison","ATXN7L3|GeneID=56970"]
["chr17",39639325,39639325,6,1,"  assembly comparison","UBTF|GeneID=7343"]
["chr17",39681771,39681771,4,1,"  assembly comparison","SLC4A1|GeneID=6521"]
["chr17",40103172,40103172,1,1,"  assembly comparison","FLJ35848|GeneID=284071"]
["chr17",40213458,40213458,1,1,"  assembly comparison","ADAM11|GeneID=4185"]
["chr17",40456520,40456520,1,1,"  assembly comparison","DCAKD|GeneID=79877"]
["chr17",40582260,40582260,1,1,"  assembly comparison","HEXIM1|GeneID=10614"]
["chr17",40583555,40583555,4,1,"  assembly comparison","HEXIM1|GeneID=10614"]
["chr17",40720077,40720077,1,1,"  assembly comparison","MAP3K14|GeneID=9020"]
["chr17",40750188,40750188,7,1,"  assembly comparison","MAP3K14|GeneID=9020"]
["chr17",41460462,41460462,1,1,"  assembly comparison","MAPT|GeneID=4137"]
["chr17",41770843,42140941,370099,1,"  NimbleGen 42M","LRRC37A|GeneID=9884/ARL17|GeneID=641522/LRRC37A2|GeneID=474170/ARL17P1|GeneID=51326/NSF|GeneID=4905"]
["chr17",42410766,42410766,2,1,"  assembly comparison","RPRML|GeneID=388394"]
["chr17",42987209,43028516,41308,1,"  NimbleGen 42M","NPEPPS|GeneID=9520"]
["chr17",43176572,43176572,1,1,"  assembly comparison","TBX21|GeneID=30009"]
["chr17",43176627,43176627,1,1,"  assembly comparison","TBX21|GeneID=30009"]
["chr17",43379804,43379804,1,1,"  assembly comparison","PNPO|GeneID=55163"]
["chr17",43492410,43492410,1,1,"  assembly comparison","NFE2L1|GeneID=4779"]
["chr17",43981815,43981815,4,1,"  assembly comparison","HOXB3|GeneID=3213"]
["chr17",43984944,43984944,2,1,"  assembly comparison","HOXB3|GeneID=3213"]
["chr17",44006521,44006521,1,1,"  assembly comparison","HOXB3|GeneID=3213"]
["chr17",44028167,44028167,9,1,"  assembly comparison","HOXB6|GeneID=3216"]
["chr17",44040075,44040075,1,1,"  assembly comparison","HOXB7|GeneID=3217"]
["chr17",44045074,44045074,4,1,"  assembly comparison","HOXB8|GeneID=3218"]
["chr17",44361370,44361370,1,1,"  assembly comparison","UBE2Z|GeneID=65264"]
["chr17",44486145,44486145,1,1,"  assembly comparison","IGF2BP1|GeneID=10642"]
["chr17",44487529,44487529,1,1,"  assembly comparison","IGF2BP1|GeneID=10642"]
["chr17",44488219,44488219,3,1,"  assembly comparison","IGF2BP1|GeneID=10642"]
["chr17",45012639,45012639,1,1,"  assembly comparison","NXPH3|GeneID=11248"]
["chr17",45031878,45031878,1,1,"  assembly comparison","SPOP|GeneID=8405"]
["chr17",45401625,45401625,1,1,"  assembly comparison","DLX4|GeneID=1748"]
["chr17",45401631,45401631,1,1,"  assembly comparison","DLX4|GeneID=1748"]
["chr17",45406963,45406963,3,1,"  assembly comparison","DLX4|GeneID=1748"]
["chr17",45515009,45520798,2716,1,"  mate pair","ITGA3|GeneID=3675"]
["chr17",45582383,45582383,2,1,"  assembly comparison","PPP1R9B|GeneID=84687"]
["chr17",45582402,45582402,2,1,"  assembly comparison","PPP1R9B|GeneID=84687"]
["chr17",45792950,45792950,1,1,"  assembly comparison","XYLT2|GeneID=64132"]
["chr17",45807978,45807978,3,1,"  assembly comparison","EME1|GeneID=146956"]
["chr17",46126500,46126500,13,1,"  assembly comparison","ANKRD40|GeneID=91369"]
["chr17",46183394,46183394,1,1,"  assembly comparison","CROP|GeneID=51747"]
["chr17",46611851,46611851,32,1,"  split read","MBTD1|GeneID=54799"]
["chr17",46611859,46611859,30,1,"  assembly comparison","MBTD1|GeneID=54799"]
["chr17",49257494,49257494,3,1,"  assembly comparison","KIF2B|GeneID=84643"]
["chr17",50595594,50595594,2,1,"  assembly comparison","STXBP4|GeneID=252983"]
["chr17",50596204,50596204,1,1,"  assembly comparison","STXBP4|GeneID=252983"]
["chr17",50697805,50697805,4,1,"  assembly comparison","HLF|GeneID=3131"]
["chr17",50755917,50755917,1,1,"  assembly comparison","HLF|GeneID=3131"]
["chr17",52300286,52300286,1,1,"  assembly comparison","DGKE|GeneID=8526"]
["chr17",52320796,52321273,478,1,"  Agilent 24M","TRIM25|GeneID=7706"]
["chr17",52478867,52478867,4,1,"  assembly comparison","RNF126P1|GeneID=376412"]
["chr17",52537810,52537810,1,1,"  assembly comparison","AKAP1|GeneID=8165"]
["chr17",52552762,52552762,1,1,"  assembly comparison","AKAP1|GeneID=8165"]
["chr17",53405444,53405444,1,1,"  assembly comparison","VEZF1|GeneID=7716"]
["chr17",53406118,53406118,1,1,"  assembly comparison","VEZF1|GeneID=7716"]
["chr17",53777602,53777602,3,1,"  assembly comparison","SUPT4H1|GeneID=6827"]
["chr17",54188488,54188488,6,1,"  assembly comparison","PPM1E|GeneID=22843"]
["chr17",54542954,54542954,1,1,"  assembly comparison","FAM33A|GeneID=348235"]
["chr17",55127987,55127987,3,1,"  assembly comparison","CLTC|GeneID=1213"]
["chr17",55128668,55128668,6,1,"  assembly comparison","CLTC|GeneID=1213"]
["chr17",55291947,55291947,1,1,"  assembly comparison","TUBD1|GeneID=51174"]
["chr17",55291983,55291983,1,1,"  assembly comparison","TUBD1|GeneID=51174"]
["chr17",55291998,55291998,1,1,"  assembly comparison","TUBD1|GeneID=51174"]
["chr17",55292012,55292012,1,1,"  assembly comparison","TUBD1|GeneID=51174"]
["chr17",55292057,55292057,1,1,"  assembly comparison","TUBD1|GeneID=51174"]
["chr17",55292123,55292123,1,1,"  assembly comparison","TUBD1|GeneID=51174"]
["chr17",55380803,55380803,1,1,"  assembly comparison","RPS6KB1|GeneID=6198"]
["chr17",55884276,55887873,3641,1,"  mate pair","APPBP2|GeneID=10513"]
["chr17",56501998,56501998,1,1,"  assembly comparison","hCG_2001000|GeneID=729617"]
["chr17",56502543,56502543,14,1,"  assembly comparison","hCG_2001000|GeneID=729617"]
["chr17",56915796,56915796,2,1,"  assembly comparison","TBX4|GeneID=9496"]
["chr17",59176757,59176757,1,1,"  assembly comparison","CCDC47|GeneID=57003"]
["chr17",59370185,59370185,2,1,"  assembly comparison","SCN4A|GeneID=6329"]
["chr17",59370482,59370482,10,1,"  assembly comparison","SCN4A|GeneID=6329"]
["chr17",59753818,59753818,1,1,"  assembly comparison","PECAM1|GeneID=5175"]
["chr17",59972325,59972325,1,1,"  assembly comparison","SMURF2|GeneID=64750"]
["chr17",61729428,61729428,1,1,"  assembly comparison","PRKCA|GeneID=5578"]
["chr17",62498590,62498590,1,1,"  assembly comparison","HELZ|GeneID=9931"]
["chr17",62500840,62500840,1,1,"  assembly comparison","HELZ|GeneID=9931"]
["chr17",62504312,62504312,3,1,"  assembly comparison","HELZ|GeneID=9931"]
["chr17",62504825,62504825,1,1,"  assembly comparison","HELZ|GeneID=9931"]
["chr17",64038772,64038772,1,1,"  assembly comparison","PRKAR1A|GeneID=5573"]
["chr17",65642759,65642759,3,1,"  assembly comparison","KCNJ16|GeneID=3773"]
["chr17",65685780,65685780,1,1,"  assembly comparison","KCNJ2|GeneID=3759"]
["chr17",68154328,68154328,1,1,"  assembly comparison","SLC39A11|GeneID=201266"]
["chr17",68791377,68791377,1,1,"  assembly comparison","CDC42EP4|GeneID=23580"]
["chr17",68844611,68844611,3,1,"  assembly comparison","SDK2|GeneID=54549"]
["chr17",69721361,69721361,1,1,"  assembly comparison","TTYH2|GeneID=94015"]
["chr17",70512130,70512130,1,1,"  assembly comparison","CDR2L|GeneID=30850"]
["chr17",70571503,70571503,4,1,"  assembly comparison","KCTD2|GeneID=23510"]
["chr17",70572279,70572279,4,1,"  assembly comparison","KCTD2|GeneID=23510"]
["chr17",70675835,70675835,1,1,"  assembly comparison","SUMO2|GeneID=6613"]
["chr17",70827275,70827275,3,1,"  assembly comparison","GRB2|GeneID=2885"]
["chr17",70964389,70964389,1,1,"  assembly comparison","KIAA0195|GeneID=9772"]
["chr17",71124238,71124238,1,1,"  assembly comparison","MYO15B|GeneID=80022"]
["chr17",71897525,71897525,3,1,"  assembly comparison","UBE2O|GeneID=63893"]
["chr17",72073101,72073101,17,1,"  assembly comparison","ST6GALNAC2|GeneID=10610"]
["chr17",72183462,72183462,1,1,"  assembly comparison","MXRA7|GeneID=439921"]
["chr17",72184979,72184979,4,1,"  assembly comparison","MXRA7|GeneID=439921"]
["chr17",72223761,72223761,1,1,"  assembly comparison","JMJD6|GeneID=23210"]
["chr17",72457158,72457158,12,1,"  assembly comparison","MGAT5B|GeneID=146664"]
["chr17",73636409,73636409,1,1,"  assembly comparison","TMC6|GeneID=11322"]
["chr17",75984673,75984673,5,1,"  assembly comparison","RNF213|GeneID=57674"]
["chr17",76024644,76024644,43,1,"  assembly comparison","FLJ35220|GeneID=284131"]
["chr17",76055542,76055542,1,1,"  assembly comparison","NPTX1|GeneID=4884"]
["chr17",76055579,76055579,1,1,"  assembly comparison","NPTX1|GeneID=4884"]
["chr17",76133697,76133697,1,1,"  assembly comparison","KIAA1303|GeneID=57521"]
["chr17",76554521,76554521,2,1,"  assembly comparison","KIAA1303|GeneID=57521"]
["chr17",76704858,76704858,6,1,"  assembly comparison","BAIAP2|GeneID=10458"]
["chr17",76834096,76834096,3,1,"  assembly comparison","SLC38A10|GeneID=124565"]
["chr17",77284706,77284706,1,1,"  assembly comparison","MRPL12|GeneID=6182"]
["chr17",78135397,78137619,2903,1,"  mate pair","FOXK2|GeneID=3607"]
["chr17",78155510,78155510,1,1,"  assembly comparison","FOXK2|GeneID=3607"]
["chr21",10012791,10012791,31,1,"  assembly comparison","TPTE|GeneID=7179"]
["chr21",10118475,10123064,15858,1,"  mate pair","BAGE4|GeneID=85317/BAGE|GeneID=574/BAGE5|GeneID=85316/BAGE2|GeneID=85319/BAGE3|GeneID=85318"]
["chr21",25869010,25869010,3,1,"  assembly comparison","BIC|GeneID=114614"]
["chr21",27213673,27213673,1,1,"  assembly comparison","ADAMTS5|GeneID=11096"]
["chr21",27215654,27215654,1,1,"  assembly comparison","ADAMTS5|GeneID=11096"]
["chr21",27217528,27217528,1,1,"  assembly comparison","ADAMTS5|GeneID=11096"]
["chr21",29300063,29300063,1,1,"  assembly comparison","RWDD2B|GeneID=10069"]
["chr21",33087099,33087099,1,1,"  assembly comparison","C21orf62|GeneID=56245"]
["chr21",33088060,33088060,1,1,"  assembly comparison","C21orf62|GeneID=56245"]
["chr21",33091187,33091187,1,1,"  assembly comparison","C21orf49|GeneID=54067"]
["chr21",33651706,33651706,1,1,"  assembly comparison","IFNAR1|GeneID=3454"]
["chr21",33744366,33744366,2,1,"  assembly comparison","TMEM50B|GeneID=757"]
["chr21",33818776,33818776,5,1,"  assembly comparison","GART|GeneID=2618"]
["chr21",33870555,33870555,1,1,"  assembly comparison","SON|GeneID=6651"]
["chr21",33871367,33871367,1,1,"  assembly comparison","SON|GeneID=6651"]
["chr21",34391584,34391584,1,1,"  assembly comparison","SLC5A3|GeneID=6526"]
["chr21",34391597,34391597,1,1,"  assembly comparison","SLC5A3|GeneID=6526"]
["chr21",34397500,34397500,1,1,"  assembly comparison","SLC5A3|GeneID=6526"]
["chr21",34741868,34741868,1,1,"  assembly comparison","KCNE1|GeneID=3753"]
["chr21",37045190,37045190,1,1,"  assembly comparison","HLCS|GeneID=3141"]
["chr21",37045276,37045276,2,1,"  assembly comparison","HLCS|GeneID=3141"]
["chr21",37367502,37367502,3,1,"  assembly comparison","TTC3|GeneID=7267"]
["chr21",37518031,37518031,1,1,"  assembly comparison","DSCR3|GeneID=10311"]
["chr21",37561636,37561636,1,1,"  assembly comparison","DSCR3|GeneID=10311"]
["chr21",37806846,37806846,1,1,"  assembly comparison","DYRK1A|GeneID=1859"]
["chr21",39117418,39117418,1,1,"  assembly comparison","ETS2|GeneID=2114"]
["chr21",39118225,39118225,3,1,"  assembly comparison","ETS2|GeneID=2114"]
["chr21",39484035,39484035,1,1,"  assembly comparison","BRWD1|GeneID=54014"]
["chr21",39636121,39636121,1,1,"  assembly comparison","HMGN1|GeneID=3150"]
["chr21",39691486,39691486,5,1,"  assembly comparison","WRB|GeneID=7485"]
["chr21",39953904,39953904,1,1,"  assembly comparison","B3GALT5|GeneID=10317"]
["chr21",41715670,41715670,1,1,"  assembly comparison","MX1|GeneID=4599"]
["chr21",42033285,42033285,2,1,"  assembly comparison","RIPK4|GeneID=54101"]
["chr21",42281389,42281389,5,1,"  assembly comparison","ZNF295|GeneID=49854"]
["chr21",42589816,42589816,3,1,"  assembly comparison","ABCG1|GeneID=9619"]
["chr21",42729691,42730685,995,1,"  Agilent 24M","UBASH3A|GeneID=53347"]
["chr21",43325508,43325508,2,1,"  assembly comparison","PKNOX1|GeneID=5316"]
["chr21",43939390,43939390,8,1,"  assembly comparison","RRP1B|GeneID=23076"]
["chr21",43939483,43939483,1,1,"  assembly comparison","RRP1B|GeneID=23076"]
["chr21",44006002,44006002,1,1,"  assembly comparison","PDXK|GeneID=8566"]
["chr21",44350335,44350335,1,1,"  assembly comparison","TRAPPC10|GeneID=7109"]
["chr21",44566077,44567268,1192,1,"  Agilent 24M","PFKL|GeneID=5211"]
["chr21",44795187,44795187,15,1,"  assembly comparison","KRTAP10-2|GeneID=386679"]
["chr21",44795807,44795807,12,1,"  split read","KRTAP10-2|GeneID=386679"]
["chr21",44836659,44836659,15,1,"  assembly comparison","KRTAP10-6|GeneID=386674"]
["chr21",45013741,45013741,2,1,"  assembly comparison","UBE2G2|GeneID=7327"]
["chr21",45468881,45468881,562,1,"  assembly comparison","ADARB1|GeneID=104"]
["chr21",45508559,45508559,4,1,"  assembly comparison","POFUT2|GeneID=23275"]
["chr21",45665395,45665395,1,1,"  assembly comparison","C21orf123|GeneID=378832"]
["chr21",46370274,46370743,470,1,"  Agilent 24M","COL6A2|GeneID=1292"]
["chr21",46545501,46545501,1,1,"  assembly comparison","C21orf58|GeneID=54058"]
["chr21",46546413,46546413,3,1,"  assembly comparison","C21orf58|GeneID=54058"]
["chr21",46567324,46567324,1,1,"  assembly comparison","C21orf58|GeneID=54058"]
["chr16",62525,62525,1,1,"  assembly comparison","RHBDF1|GeneID=64285"]
["chr16",62556,62556,2,1,"  assembly comparison","RHBDF1|GeneID=64285"]
["chr16",62579,62579,2,1,"  assembly comparison","RHBDF1|GeneID=64285"]
["chr16",78773,78773,1,1,"  assembly comparison","C16orf35|GeneID=8131"]
["chr16",272958,272958,1,1,"  assembly comparison","ARHGDIG|GeneID=398"]
["chr16",1078766,1078766,32,1,"  split read","C1QTNF8|GeneID=390664"]
["chr16",1762802,1762802,4,1,"  assembly comparison","MRPS34|GeneID=65993"]
["chr16",1818295,1818295,1,1,"  assembly comparison","FAHD1|GeneID=81889"]
["chr16",2074985,2074985,3,1,"  assembly comparison","TSC2|GeneID=7249"]
["chr16",2842845,2842845,1,1,"  assembly comparison","PRSS22|GeneID=64063"]
["chr16",2842975,2842975,6,1,"  assembly comparison","PRSS22|GeneID=64063"]
["chr16",2901989,2901989,2,1,"  assembly comparison","FLYWCH1|GeneID=84256"]
["chr16",3125125,3125125,6,1,"  assembly comparison","ZNF213|GeneID=7760"]
["chr16",3132364,3132364,79,1,"  assembly comparison","ZNF213|GeneID=7760"]
["chr16",3213828,3213828,1,1,"  assembly comparison","ZNF200|GeneID=7752"]
["chr16",3232305,3232305,3,1,"  assembly comparison","MEFV|GeneID=4210"]
["chr16",3643809,3643809,2,1,"  assembly comparison","DNASE1|GeneID=1773"]
["chr16",4262956,4262956,2,1,"  assembly comparison","TFAP4|GeneID=7023"]
["chr16",4794973,4794973,4,1,"  assembly comparison","N-PAC|GeneID=84656"]
["chr16",5074901,5074901,2,1,"  assembly comparison","FAM86A|GeneID=196483/ALG1|GeneID=56052"]
["chr16",7700861,7700861,1,1,"  assembly comparison","A2BP1|GeneID=54715"]
["chr16",7701230,7701230,1,1,"  assembly comparison","A2BP1|GeneID=54715"]
["chr16",8714656,8714656,1,1,"  assembly comparison","ABAT|GeneID=18"]
["chr16",9118618,9118618,1,1,"  assembly comparison","C16orf72|GeneID=29035"]
["chr16",9761756,9761756,2,1,"  assembly comparison","GRIN2A|GeneID=2903"]
["chr16",10484105,10484105,1,1,"  assembly comparison","ATF7IP2|GeneID=80063"]
["chr16",10531307,10531307,1,1,"  assembly comparison","EMP2|GeneID=2013"]
["chr16",10534121,10534121,1,1,"  assembly comparison","EMP2|GeneID=2013"]
["chr16",11550411,11550411,1,1,"  assembly comparison","LITAF|GeneID=9516"]
["chr16",11680102,11680102,5,1,"  assembly comparison","SNN|GeneID=8303"]
["chr16",11830008,11830008,1,1,"  assembly comparison","BCAR4|GeneID=400500"]
["chr16",11917063,11917063,6,1,"  assembly comparison","GSPT1|GeneID=2935"]
["chr16",11969412,11969412,1,1,"  assembly comparison","TNFRSF17|GeneID=608"]
["chr16",12572141,12572141,2,1,"  assembly comparison","SNX29|GeneID=92017"]
["chr16",12572278,12572278,3,1,"  assembly comparison","SNX29|GeneID=92017"]
["chr16",12573667,12573667,1,1,"  assembly comparison","SNX29|GeneID=92017"]
["chr16",12661892,12661892,2,1,"  assembly comparison","FLJ11151|GeneID=55313"]
["chr16",14689622,14710057,20436,1,"  NimbleGen 42M","PLA2G10|GeneID=8399"]
["chr16",14895293,14912313,17021,1,"  NimbleGen 42M","NOMO1|GeneID=23420"]
["chr16",14956169,15030295,74127,1,"  NimbleGen 42M","PDXDC1|GeneID=23042"]
["chr16",15037834,15037834,2,1,"  assembly comparison","PDXDC1|GeneID=23042"]
["chr16",15409980,15409980,1,1,"  assembly comparison","MPV17L|GeneID=255027"]
["chr16",15410457,15410457,1,1,"  assembly comparison","MPV17L|GeneID=255027"]
["chr16",15867490,15867490,5,1,"  assembly comparison","C16orf63|GeneID=123811"]
["chr16",16143972,16143972,1,1,"  assembly comparison","ABCC1|GeneID=4363"]
["chr16",17104124,17104124,2,1,"  assembly comparison","XYLT1|GeneID=64131"]
["chr16",18403699,18420039,16341,1,"  NimbleGen 42M","NOMO2|GeneID=283820"]
["chr16",18762126,18764989,3369,1,"  mate pair","SMG1|GeneID=23049"]
["chr16",18997111,18997111,1,1,"  assembly comparison","COQ7|GeneID=10229"]
["chr16",19037304,19037304,1,1,"  assembly comparison","ITPRIPL2|GeneID=162073"]
["chr16",19417441,19417441,2,1,"  assembly comparison","TMC5|GeneID=79838"]
["chr16",19470598,19470598,4,1,"  assembly comparison","CP110|GeneID=9738"]
["chr16",20229594,20229594,1,1,"  assembly comparison","GP2|GeneID=2813"]
["chr16",20652932,20652932,6,1,"  assembly comparison","THUMPD1|GeneID=55623"]
["chr16",20654200,20654200,1,1,"  assembly comparison","THUMPD1|GeneID=55623"]
["chr16",20655201,20655201,1,1,"  assembly comparison","THUMPD1|GeneID=55623"]
["chr16",20655219,20655219,1,1,"  assembly comparison","THUMPD1|GeneID=55623"]
["chr16",21219840,21219840,1,1,"  assembly comparison","NCRNA00169|GeneID=400508"]
["chr16",21236840,21236840,2,1,"  assembly comparison","NCRNA00169|GeneID=400508"]
["chr16",22265351,22265351,2,1,"  assembly comparison","CDR2|GeneID=1039"]
["chr16",22982566,22982566,1,1,"  assembly comparison","USP31|GeneID=57478"]
["chr16",23442657,23442657,1,1,"  assembly comparison","EARS2|GeneID=124454"]
["chr16",23442808,23442808,5,1,"  assembly comparison","EARS2|GeneID=124454"]
["chr16",24695923,24695923,12,1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",24742959,24742959,3,1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",24743452,24743452,1,1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",24743591,24743591,1,1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",27368299,27368299,2,1,"  assembly comparison","IL21R|GeneID=50615"]
["chr16",27708540,27708540,4,1,"  assembly comparison","GSG1L|GeneID=146395"]
["chr16",28239231,28239231,1,1,"  assembly comparison","SBK1|GeneID=388228"]
["chr16",28332943,28332943,1,1,"  assembly comparison","CDC37P1|GeneID=390688"]
["chr16",28525046,28525577,532,1,"  NimbleGen 42M","SULT1A1|GeneID=6817"]
["chr16",28782551,28783006,456,1,"  Agilent 24M","SH2B1|GeneID=25970"]
["chr16",29587557,29587557,20,1,"  assembly comparison","SPN|GeneID=6693"]
["chr16",29728497,29728497,1,1,"  assembly comparison","MAZ|GeneID=4150"]
["chr16",29739310,29739310,1,1,"  assembly comparison","C16orf53|GeneID=79447/MVP|GeneID=9961"]
["chr16",30041241,30043690,2631,1,"  mate pair","MAPK3|GeneID=5595"]
["chr16",30910939,30910939,2,1,"  assembly comparison","STX1B|GeneID=112755"]
["chr16",30911522,30911522,11,1,"  assembly comparison","STX1B|GeneID=112755"]
["chr16",31013376,31014004,629,1,"  Agilent 24M","VKORC1|GeneID=79001"]
["chr16",31251459,31251459,5,1,"  assembly comparison","ITGAM|GeneID=3684"]
["chr16",31678204,31678204,1,1,"  assembly comparison","ZNF720|GeneID=124411"]
["chr16",32562029,32615849,53821,1,"  NimbleGen 42M","LOC729355|GeneID=729355/TP53TG3|GeneID=24150"]
["chr16",45251133,45251133,1,1,"  assembly comparison","VPS35|GeneID=55737"]
["chr16",45251625,45251625,4,1,"  assembly comparison","VPS35|GeneID=55737"]
["chr16",45297124,45297124,1,1,"  assembly comparison","MYLK3|GeneID=91807"]
["chr16",48082289,48082289,1,1,"  assembly comparison","ZNF423|GeneID=23090"]
["chr16",48821729,48821729,1,1,"  assembly comparison","PAPD5|GeneID=64282"]
["chr16",49258384,49258384,1,1,"  assembly comparison","SNX20|GeneID=124460"]
["chr16",49727943,49727943,1,1,"  assembly comparison","SALL1|GeneID=6299"]
["chr16",51029928,51029928,5,1,"  assembly comparison","TOX3|GeneID=27324"]
["chr16",52094671,52094671,5,1,"  assembly comparison","AKTIP|GeneID=64400"]
["chr16",54176328,54176328,4,1,"  assembly comparison","LPCAT2|GeneID=54947"]
["chr16",54937655,54937655,1,1,"  assembly comparison","GNAO1|GeneID=2775"]
["chr16",55244532,55244532,1,1,"  assembly comparison","MT1B|GeneID=4490"]
["chr16",55262456,55262456,1,1,"  assembly comparison","MT1H|GeneID=4496"]
["chr16",55267833,55267833,1,1,"  assembly comparison","MT1IP|GeneID=644314"]
["chr16",55616758,55617286,529,1,"  Agilent 24M","NLRC5|GeneID=84166"]
["chr16",55956219,55956219,1,1,"  assembly comparison","CCL22|GeneID=6367"]
["chr16",56611972,56611972,4,1,"  assembly comparison","C16orf57|GeneID=79650"]
["chr16",56997536,56997536,4,1,"  assembly comparison","GINS3|GeneID=64785"]
["chr16",57111659,57111659,1,1,"  assembly comparison","CNOT1|GeneID=23019"]
["chr16",65755285,65755285,1,1,"  assembly comparison","FBXL8|GeneID=55336"]
["chr16",65767458,65767458,2,1,"  assembly comparison","KIAA0895L|GeneID=653319"]
["chr16",66783614,66783614,1,1,"  assembly comparison","NFATC3|GeneID=4775"]
["chr16",66951752,66951752,1,1,"  assembly comparison","SMPD3|GeneID=55512"]
["chr16",67156257,67156257,3,1,"  assembly comparison","ZFP90|GeneID=146198"]
["chr16",67157137,67157137,1,1,"  assembly comparison","ZFP90|GeneID=146198"]
["chr16",67157537,67157537,2,1,"  assembly comparison","ZFP90|GeneID=146198"]
["chr16",67708996,67708996,3,1,"  assembly comparison","HAS3|GeneID=3038"]
["chr16",67892393,67892393,1,1,"  assembly comparison","SNTB2|GeneID=6645"]
["chr16",68601385,68666545,65161,1,"  NimbleGen 42M","PDXDC2|GeneID=283970"]
["chr16",68749966,68749966,2,1,"  assembly comparison","PDPR|GeneID=55066"]
["chr16",68971200,68971200,2,1,"  assembly comparison","ST3GAL2|GeneID=6483"]
["chr16",69254439,69254439,1,1,"  assembly comparison","MTSS1L|GeneID=92154"]
["chr16",69453516,69453516,1,1,"  assembly comparison","HYDIN|GeneID=54768"]
["chr16",70238085,70238085,4,1,"  assembly comparison","PHLPPL|GeneID=23035"]
["chr16",70451708,70451708,1,1,"  assembly comparison","ZNF821|GeneID=55565"]
["chr16",70616370,70616370,5,1,"  assembly comparison","DHODH|GeneID=1723"]
["chr16",71377830,71377830,1,1,"  assembly comparison","ZFHX3|GeneID=463"]
["chr16",73213094,73213094,1,1,"  assembly comparison","RFWD3|GeneID=55159"]
["chr16",73258243,73258243,24,1,"  assembly comparison","RFWD3|GeneID=55159"]
["chr16",73464985,73464985,1,1,"  assembly comparison","WDR59|GeneID=79726"]
["chr16",73762399,73762399,30,1,"  assembly comparison","ZFP1|GeneID=162239"]
["chr16",74069797,74069797,1,1,"  assembly comparison","CHST6|GeneID=4166"]
["chr16",74070039,74070549,511,1,"  Agilent 24M","CHST6|GeneID=4166"]
["chr16",74869104,74869104,1,1,"  assembly comparison","CNTNAP4|GeneID=85445"]
["chr16",75874305,75874305,3,1,"  assembly comparison","ADAMTS18|GeneID=170692"]
["chr16",75874323,75874323,1,1,"  assembly comparison","ADAMTS18|GeneID=170692"]
["chr16",78186120,78186120,1,1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",78189198,78189198,1,1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",78189673,78189673,1,1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",78189869,78189869,3,1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",78190008,78190008,2,1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",79637796,79637796,14,1,"  split read","ATMIN|GeneID=23300"]
["chr16",79637797,79637797,2,1,"  assembly comparison","ATMIN|GeneID=23300"]
["chr16",79718981,79718981,22,1,"  split read","PKD1L2|GeneID=114780"]
["chr16",79754990,79755755,766,1,"  Agilent 24M","PKD1L2|GeneID=114780"]
["chr16",82506764,82506764,1,1,"  assembly comparison","MLYCD|GeneID=23417"]
["chr16",82593512,82593512,2,1,"  assembly comparison","NECAB2|GeneID=54550"]
["chr16",83069166,83069166,1,1,"  assembly comparison","KIAA1609|GeneID=57707"]
["chr16",84266268,84266268,4,1,"  assembly comparison","KIAA0182|GeneID=23199"]
["chr16",86295438,86295438,37,1,"  assembly comparison","LOC100129637|GeneID=100129637"]
["chr16",86295456,86295456,37,1,"  assembly comparison","LOC100129637|GeneID=100129637"]
["chr16",86295500,86295500,37,1,"  assembly comparison","LOC100129637|GeneID=100129637"]
["chr16",86566213,86566213,1,1,"  assembly comparison","BANP|GeneID=54971"]
["chr16",87033845,87033845,27,1,"  assembly comparison","ZNF469|GeneID=84627"]
["chr16",87262702,87265616,2790,1,"  mate pair","MGC23284|GeneID=197187"]
["chr16",87272197,87272197,1,1,"  assembly comparison","SNAI3|GeneID=333929"]
["chr16",87325871,87326904,2639,1,"  mate pair","FAM38A|GeneID=9780"]
["chr16",87748477,87748477,4,1,"  assembly comparison","ACSF3|GeneID=197322"]
["chr16",87754374,87754374,1,1,"  assembly comparison","C16orf81|GeneID=283860"]
["chr16",88131199,88131199,1,1,"  assembly comparison","SPG7|GeneID=6687"]
["chr16",88151493,88151493,4,1,"  assembly comparison","SPG7|GeneID=6687"]
["chr16",88623098,88623098,24,1,"  assembly comparison","C16orf3|GeneID=750"]
["chr16",88623104,88623104,24,1,"  split read","C16orf3|GeneID=750"]
["chr3",3056445,3056445,1,1,"  assembly comparison","CNTN4|GeneID=152330"]
["chr3",3165500,3165500,4,1,"  assembly comparison","TRNT1|GeneID=51095"]
["chr3",3165659,3165659,19,1,"  assembly comparison","TRNT1|GeneID=51095"]
["chr3",3167529,3167529,4,1,"  assembly comparison","CRBN|GeneID=51185"]
["chr3",4864093,4864093,2,1,"  assembly comparison","ITPR1|GeneID=3708"]
["chr3",5000540,5000540,6,1,"  assembly comparison","BHLHE40|GeneID=8553"]
["chr3",5197491,5197491,11,1,"  assembly comparison","ARL8B|GeneID=55207"]
["chr3",9403051,9403051,1,1,"  assembly comparison","THUMPD3|GeneID=25917"]
["chr3",9852763,9852763,2,1,"  assembly comparison","TTLL3|GeneID=26140"]
["chr3",9933956,9933956,1,1,"  assembly comparison","IL17RC|GeneID=84818"]
["chr3",10342783,10342783,1,1,"  assembly comparison","ATP2B2|GeneID=491"]
["chr3",11660156,11660156,1,1,"  assembly comparison","VGLL4|GeneID=9686"]
["chr3",14501689,14501689,4,1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14536633,14536633,1,1,"  assembly comparison","GRIP2|GeneID=80852"]
["chr3",15062484,15062484,4,1,"  assembly comparison","NR2C2|GeneID=7182"]
["chr3",16281889,16281889,1,1,"  assembly comparison","OXNAD1|GeneID=92106"]
["chr3",16604037,16604037,1,1,"  assembly comparison","DAZL|GeneID=1618"]
["chr3",16614544,16615416,873,1,"  Agilent 24M","DAZL|GeneID=1618"]
["chr3",17175679,17175679,2,1,"  assembly comparison","TBC1D5|GeneID=9779"]
["chr3",20000669,20000669,1,1,"  assembly comparison","RAB5A|GeneID=5868"]
["chr3",20000678,20000678,1,1,"  assembly comparison","RAB5A|GeneID=5868"]
["chr3",23994991,23994991,1,1,"  assembly comparison","NR1D2|GeneID=9975"]
["chr3",24135456,24135456,1,1,"  assembly comparison","THRB|GeneID=7068"]
["chr3",27389579,27389579,1,1,"  assembly comparison","SLC4A7|GeneID=9497"]
["chr3",27738432,27738432,6,1,"  assembly comparison","EOMES|GeneID=8320"]
["chr3",28339866,28339866,1,1,"  assembly comparison","AZI2|GeneID=64343"]
["chr3",29297981,29297981,1,1,"  assembly comparison","RBMS3|GeneID=27303"]
["chr3",30021611,30021611,2,1,"  assembly comparison","RBMS3|GeneID=27303"]
["chr3",30710343,30710343,1,1,"  assembly comparison","TGFBR2|GeneID=7048"]
["chr3",30743682,30743682,12,1,"  assembly comparison","GADL1|GeneID=339896"]
["chr3",32497876,32497876,1,1,"  assembly comparison","CMTM6|GeneID=54918"]
["chr3",32499232,32499232,2,1,"  assembly comparison","CMTM6|GeneID=54918"]
["chr3",32543174,32543174,2,1,"  assembly comparison","DYNC1LI1|GeneID=51143"]
["chr3",32908369,32908369,4,1,"  assembly comparison","TRIM71|GeneID=131405"]
["chr3",33160039,33160039,6,1,"  assembly comparison","CRTAP|GeneID=10491"]
["chr3",37005501,37005501,1,1,"  assembly comparison","EPM2AIP1|GeneID=9852"]
["chr3",37069186,37069186,3,1,"  assembly comparison","LRRFIP2|GeneID=9209"]
["chr3",37434371,37434371,2,1,"  assembly comparison","C3orf35|GeneID=339883"]
["chr3",38509145,38509145,1,1,"  assembly comparison","ACVR2B|GeneID=93"]
["chr3",38564677,38564677,25,1,"  assembly comparison","SCN5A|GeneID=6331"]
["chr3",38714827,38714827,1,1,"  assembly comparison","SCN10A|GeneID=6336"]
["chr3",39413656,39413656,1,1,"  assembly comparison","SLC25A38|GeneID=54977"]
["chr3",40276489,40276489,3,1,"  assembly comparison","MYRIP|GeneID=25924"]
["chr3",40328802,40328802,1,1,"  assembly comparison","EIF1B|GeneID=10289"]
["chr3",40328840,40328840,1,1,"  assembly comparison","EIF1B|GeneID=10289"]
["chr3",40478523,40478523,15,1,"  split read","RPL14|GeneID=9045"]
["chr3",40478556,40478556,15,1,"  assembly comparison","RPL14|GeneID=9045"]
["chr3",41256435,41256435,1,1,"  assembly comparison","CTNNB1|GeneID=1499"]
["chr3",41256609,41256609,4,1,"  assembly comparison","CTNNB1|GeneID=1499"]
["chr3",42663798,42663798,10,1,"  assembly comparison","NKTR|GeneID=4820"]
["chr3",42663799,42663799,1,1,"  assembly comparison","NKTR|GeneID=4820"]
["chr3",42681353,42681353,1,1,"  assembly comparison","ZBTB47|GeneID=92999"]
["chr3",42882689,42882689,3,1,"  assembly comparison","CCBP2|GeneID=1238"]
["chr3",43073536,43073536,1,1,"  assembly comparison","LOC729085|GeneID=729085"]
["chr3",43073975,43073975,1,1,"  assembly comparison","LOC729085|GeneID=729085"]
["chr3",43365391,43365391,1,1,"  assembly comparison","SNRK|GeneID=54861"]
["chr3",44739493,44739493,1,1,"  assembly comparison","ZNF502|GeneID=91392"]
["chr3",44740020,44740020,1,1,"  assembly comparison","ZNF502|GeneID=91392"]
["chr3",44769452,44769452,3,1,"  assembly comparison","KIAA1143|GeneID=57456"]
["chr3",45697123,45697123,1,1,"  assembly comparison","LIMD1|GeneID=8994"]
["chr3",45761346,45761346,1,1,"  assembly comparison","SACM1L|GeneID=22908"]
["chr3",46218718,46218718,1,1,"  assembly comparison","CCR1|GeneID=1230"]
["chr3",46476290,46476290,3,1,"  assembly comparison","LTF|GeneID=4057"]
["chr3",46533791,46533791,1,1,"  assembly comparison","LRRC2|GeneID=79442"]
["chr3",46598020,46598020,1,1,"  assembly comparison","TDGF1|GeneID=6997"]
["chr3",47603810,47603810,1,1,"  assembly comparison","SMARCC1|GeneID=6599"]
["chr3",47867383,47867383,3,1,"  assembly comparison","MAP4|GeneID=4134"]
["chr3",48310594,48310594,1,1,"  assembly comparison","NME6|GeneID=10201"]
["chr3",48996057,48996057,1,1,"  assembly comparison","ARIH2|GeneID=10425"]
["chr3",49841052,49841052,1,1,"  assembly comparison","TRAIP|GeneID=10293"]
["chr3",50200636,50200636,2,1,"  assembly comparison","SEMA3F|GeneID=6405"]
["chr3",50226839,50226839,1,1,"  assembly comparison","SLC38A3|GeneID=10991"]
["chr3",50349879,50349879,2,1,"  assembly comparison","RASSF1|GeneID=11186"]
["chr3",51430671,51433327,3324,1,"  mate pair","VPRBP|GeneID=9730"]
["chr3",52002921,52002921,6,1,"  assembly comparison","RPL29|GeneID=6159"]
["chr3",52264329,52264329,1,1,"  assembly comparison","WDR82|GeneID=80335"]
["chr3",52703362,52703362,1,1,"  assembly comparison","GNL3|GeneID=26354"]
["chr3",52822046,52822046,1,1,"  assembly comparison","ITIH4|GeneID=3700"]
["chr3",53201708,53201708,1,1,"  assembly comparison","PRKCD|GeneID=5580"]
["chr3",53293614,53293614,2,1,"  assembly comparison","DCP1A|GeneID=55802"]
["chr3",55477224,55477224,1,1,"  assembly comparison","WNT5A|GeneID=7474"]
["chr3",56625096,56625096,3,1,"  assembly comparison","CCDC66|GeneID=285331"]
["chr3",58093595,58094330,736,1,"  NimbleGen 42M","FLNB|GeneID=2317"]
["chr3",58279283,58279283,1,1,"  assembly comparison","RPP14|GeneID=11102"]
["chr3",58526227,58526227,1,1,"  assembly comparison","FAM107A|GeneID=11170"]
["chr3",59710287,59710287,1,1,"  assembly comparison","FHIT|GeneID=2272"]
["chr3",64648375,64648375,1,1,"  assembly comparison","ADAMTS9|GeneID=56999"]
["chr3",66511318,66511318,4,1,"  assembly comparison","SLC25A26|GeneID=115286"]
["chr3",67507953,67507953,1,1,"  assembly comparison","SUCLG2|GeneID=8801"]
["chr3",69107383,69107383,2,1,"  assembly comparison","C3orf64|GeneID=285203"]
["chr3",69108482,69108482,4,1,"  assembly comparison","C3orf64|GeneID=285203"]
["chr3",69108512,69108512,10,1,"  assembly comparison","C3orf64|GeneID=285203"]
["chr3",69302253,69302253,1,1,"  assembly comparison","FRMD4B|GeneID=23150"]
["chr3",71814936,71814936,1,1,"  assembly comparison","EIF4E3|GeneID=317649"]
["chr3",72508030,72508030,4,1,"  assembly comparison","RYBP|GeneID=23429"]
["chr3",72508764,72508764,1,1,"  assembly comparison","RYBP|GeneID=23429"]
["chr3",72509955,72509955,1,1,"  assembly comparison","RYBP|GeneID=23429"]
["chr3",75553817,75553817,2,1,"  assembly comparison","FAM86D|GeneID=692099"]
["chr3",75557055,75719496,162442,1,"  NimbleGen 42M","FAM86D|GeneID=692099"]
["chr3",81893394,81893394,1,1,"  assembly comparison","GBE1|GeneID=2632"]
["chr3",87074293,87074293,1,1,"  assembly comparison","VGLL3|GeneID=389136"]
["chr3",87078530,87078530,1,1,"  assembly comparison","VGLL3|GeneID=389136"]
["chr3",88273836,88273836,1,1,"  assembly comparison","ZNF654|GeneID=55279"]
["chr3",88274144,88274144,2,1,"  assembly comparison","ZNF654|GeneID=55279"]
["chr3",88281882,88281882,1,1,"  assembly comparison","C3orf38|GeneID=285237"]
["chr3",99997849,99997849,2,1,"  assembly comparison","DCBLD2|GeneID=131566"]
["chr3",100000860,100000860,1,1,"  assembly comparison","DCBLD2|GeneID=131566"]
["chr3",101653317,101653317,57,1,"  assembly comparison","LNP1|GeneID=348801"]
["chr3",101951101,101951101,4,1,"  assembly comparison","ABI3BP|GeneID=25890"]
["chr3",102526845,102526845,1,1,"  assembly comparison","SENP7|GeneID=57337"]
["chr3",103024379,103024379,1,1,"  assembly comparison","FAM55C|GeneID=91775"]
["chr3",103680017,103680017,29,1,"  assembly comparison","ZPLD1|GeneID=131368"]
["chr3",109129700,109129700,2,1,"  assembly comparison","LOC285205|GeneID=285205"]
["chr3",112927597,112927597,5,1,"  assembly comparison","PLCXD2|GeneID=257068"]
["chr3",113352533,113369438,14324,1,"  mate pair","SLC9A10|GeneID=285335"]
["chr3",113534684,113534684,1,1,"  assembly comparison","CD200|GeneID=4345"]
["chr3",113564264,113564264,2,1,"  assembly comparison","CD200|GeneID=4345"]
["chr3",113666330,113666330,1,1,"  assembly comparison","BTLA|GeneID=151888"]
["chr3",113701025,113701025,2,1,"  assembly comparison","BTLA|GeneID=151888"]
["chr3",114204212,114204212,2,1,"  assembly comparison","C3orf17|GeneID=25871"]
["chr3",114646050,114646050,1,1,"  assembly comparison","CCDC52|GeneID=152185"]
["chr3",115437750,115437750,1,1,"  assembly comparison","ZNF80|GeneID=7634"]
["chr3",115509755,115509755,2,1,"  assembly comparison","TIGIT|GeneID=201633"]
["chr3",120694698,120694698,1,1,"  assembly comparison","KTELC1|GeneID=56983"]
["chr3",120831051,120831051,3,1,"  assembly comparison","PLA1A|GeneID=51365"]
["chr3",121528805,121528805,1,1,"  assembly comparison","LRRC58|GeneID=116064"]
["chr3",121531257,121531257,1,1,"  assembly comparison","LRRC58|GeneID=116064"]
["chr3",122626075,122626075,1,1,"  assembly comparison","STXBP5L|GeneID=9515"]
["chr3",122791011,122791011,1,1,"  assembly comparison","ARGFX|GeneID=503582"]
["chr3",123486916,123486916,1,1,"  assembly comparison","CASR|GeneID=846"]
["chr3",123561395,123561395,1,1,"  assembly comparison","CCDC58|GeneID=131076"]
["chr3",124089115,124089115,2,1,"  assembly comparison","LOC100129550|GeneID=100129550"]
["chr3",124110837,124110837,2,1,"  assembly comparison","SEMA5B|GeneID=54437"]
["chr3",124138902,124141624,2357,1,"  mate pair","SEMA5B|GeneID=54437"]
["chr3",124475420,124475420,4,1,"  assembly comparison","SEC22A|GeneID=26984"]
["chr3",124814466,124814466,1,1,"  assembly comparison","MYLK|GeneID=4638"]
["chr3",124814886,124814886,1,1,"  assembly comparison","MYLK|GeneID=4638"]
["chr3",126129398,126129398,3,1,"  assembly comparison","MUC13|GeneID=56667"]
["chr3",126169009,126169009,1,1,"  assembly comparison","HEG1|GeneID=57493"]
["chr3",126171329,126171329,1,1,"  assembly comparison","HEG1|GeneID=57493"]
["chr3",127654291,127654291,1,1,"  assembly comparison","ZXDC|GeneID=79364"]
["chr3",127655608,127655608,1,1,"  assembly comparison","ZXDC|GeneID=79364"]
["chr3",128893648,128893648,2,1,"  assembly comparison","MGLL|GeneID=11343"]
["chr3",130290216,130290216,1,1,"  assembly comparison","RAB43|GeneID=339122"]
["chr3",130370485,130370485,1,1,"  assembly comparison","CNBP|GeneID=7555"]
["chr3",130479134,130479134,1,1,"  assembly comparison","COPG|GeneID=22820"]
["chr3",130850233,130850233,1,1,"  assembly comparison","TMCC1|GeneID=23023"]
["chr3",131246388,131288926,42539,1,"  Affymetrix 6.0","LOC644974|GeneID=644974"]
["chr3",131673412,131673412,1,1,"  assembly comparison","COL29A1|GeneID=256076"]
["chr3",131686241,131686241,1,1,"  assembly comparison","COL29A1|GeneID=256076"]
["chr3",134597862,134597862,2,1,"  assembly comparison","TMEM108|GeneID=66000"]
["chr3",134863371,134863371,1,1,"  assembly comparison","TOPBP1|GeneID=11073"]
["chr3",135803516,135803516,11,1,"  assembly comparison","KY|GeneID=339855"]
["chr3",136461589,136461589,1,1,"  assembly comparison","EPHB1|GeneID=2047"]
["chr3",138021076,138021076,2,1,"  assembly comparison","TMEM22|GeneID=80723"]
["chr3",141768337,141768337,2,1,"  assembly comparison","CLSTN2|GeneID=64084"]
["chr3",142178182,142178182,1,1,"  assembly comparison","SLC25A36|GeneID=55186"]
["chr3",142495180,142495180,6,1,"  assembly comparison","ACPL2|GeneID=92370"]
["chr3",143361397,143361397,23,1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",143362621,143362621,1,1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",143362646,143362646,6,1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",143366994,143366994,1,1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",144258939,144258939,2,1,"  assembly comparison","SR140|GeneID=23350"]
["chr3",152528227,152528227,2,1,"  assembly comparison","P2RY13|GeneID=53829"]
["chr3",152616297,152633225,10589,1,"  mate pair","MED12L|GeneID=116931"]
["chr3",152645925,152645925,1,1,"  assembly comparison","IGSF10|GeneID=285313"]
["chr3",152645932,152645932,1,1,"  assembly comparison","IGSF10|GeneID=285313"]
["chr3",155457058,155457058,1,1,"  assembly comparison","SGEF|GeneID=26084"]
["chr3",155458149,155458149,1,1,"  assembly comparison","SGEF|GeneID=26084"]
["chr3",156680443,156680443,1,1,"  assembly comparison","PLCH1|GeneID=23007"]
["chr3",157742794,157742794,1,1,"  assembly comparison","SSR3|GeneID=6747"]
["chr3",158801116,158801116,2,1,"  assembly comparison","C3orf55|GeneID=152078"]
["chr3",159296904,159296904,1,1,"  assembly comparison","SHOX2|GeneID=6474"]
["chr3",159297414,159297414,6,1,"  assembly comparison","SHOX2|GeneID=6474"]
["chr3",166973575,166973575,1,1,"  assembly comparison","BCHE|GeneID=590"]
["chr3",170348216,170348216,2,1,"  assembly comparison","EVI1|GeneID=2122"]
["chr3",171593112,171593112,2,1,"  assembly comparison","SKIL|GeneID=6498"]
["chr3",171633612,171633612,1,1,"  assembly comparison","CLDN11|GeneID=5010"]
["chr3",171663223,171663223,1,1,"  assembly comparison","SLC7A14|GeneID=57709"]
["chr3",172089554,172089554,4,1,"  assembly comparison","EIF5A2|GeneID=56648"]
["chr3",173598178,173598178,1,1,"  assembly comparison","FNDC3B|GeneID=64778"]
["chr3",173831604,173831604,4,1,"  assembly comparison","AADACL1|GeneID=57552"]
["chr3",185239530,185239530,14,1,"  split read","HTR3D|GeneID=200909"]
["chr3",185386635,185386635,1,1,"  assembly comparison","ABCF3|GeneID=55324"]
["chr3",185782752,185782752,2,1,"  assembly comparison","EPHB3|GeneID=2049"]
["chr3",185782774,185782774,4,1,"  assembly comparison","EPHB3|GeneID=2049"]
["chr3",185911848,185911848,3,1,"  assembly comparison","MAGEF1|GeneID=64110"]
["chr3",186682995,186682995,1,1,"  assembly comparison","MAP3K13|GeneID=9175"]
["chr3",186683304,186683304,1,1,"  assembly comparison","MAP3K13|GeneID=9175"]
["chr3",187248280,187248280,1,1,"  assembly comparison","ETV5|GeneID=2119"]
["chr3",188055559,188055559,1,1,"  assembly comparison","ADIPOQ|GeneID=9370"]
["chr3",188055955,188055955,1,1,"  assembly comparison","ADIPOQ|GeneID=9370"]
["chr3",188400950,188400950,1,1,"  assembly comparison","RTP1|GeneID=132112"]
["chr3",188922455,188922455,2,1,"  assembly comparison","BCL6|GeneID=604"]
["chr3",190521649,190521649,1,1,"  assembly comparison","TPRG1|GeneID=285386"]
["chr3",190521760,190521760,1,1,"  assembly comparison","TPRG1|GeneID=285386"]
["chr3",190990212,190990212,2,1,"  assembly comparison","TP63|GeneID=8626"]
["chr3",195336858,195336858,3,1,"  assembly comparison","HES1|GeneID=3280"]
["chr3",195605945,195605945,2,1,"  assembly comparison","ATP13A3|GeneID=79572"]
["chr3",195790303,195790303,1,1,"  assembly comparison","TMEM44|GeneID=93109"]
["chr3",195890561,195890561,1,1,"  assembly comparison","FAM43A|GeneID=131583"]
["chr3",196777000,196777000,4,1,"  assembly comparison","APOD|GeneID=347"]
["chr3",196959427,196959427,2,1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",196990252,196999952,9701,1,"  NimbleGen 42M","MUC4|GeneID=4585"]
["chr3",196995752,196995752,48,1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",196996387,196996387,144,1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",196999809,196999809,48,1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",197002513,197002513,15,1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",197918761,197918761,5,1,"  assembly comparison","C3orf34|GeneID=84984"]
["chr3",198144303,198144303,11,1,"  assembly comparison","SENP5|GeneID=205564"]
["chr3",198147136,198147136,1,1,"  assembly comparison","NCBP2|GeneID=22916"]
["chr3",198154909,198154909,1,1,"  assembly comparison","LOC152217|GeneID=152217"]
["chr3",198159880,198159880,1,1,"  assembly comparison","PIGZ|GeneID=80235"]
["chr3",198721867,198721867,23,1,"  assembly comparison","BDH1|GeneID=622"]
["chr18",202592,202592,2,1,"  assembly comparison","USP14|GeneID=9097"]
["chr18",702376,702376,90,1,"  assembly comparison","ENOSF1|GeneID=55556"]
["chr18",713394,713394,2,1,"  assembly comparison","YES1|GeneID=7525"]
["chr18",2793216,2793216,2,1,"  assembly comparison","SMCHD1|GeneID=23347"]
["chr18",5233945,5233945,1,1,"  assembly comparison","LOC339290|GeneID=339290"]
["chr18",5280607,5280607,1,1,"  assembly comparison","ZFP161|GeneID=7541"]
["chr18",5944814,5944814,3,1,"  assembly comparison","L3MBTL4|GeneID=91133"]
["chr18",6905518,6905518,1,1,"  assembly comparison","ARHGAP28|GeneID=79822"]
["chr18",8629189,8629189,5,1,"  assembly comparison","RAB12|GeneID=201475"]
["chr18",9272865,9272865,1,1,"  assembly comparison","ANKRD12|GeneID=23253"]
["chr18",9390304,9390304,1,1,"  assembly comparison","TWSG1|GeneID=57045"]
["chr18",9849601,9849601,1,1,"  assembly comparison","RAB31|GeneID=11031"]
["chr18",9947035,9947035,1,1,"  assembly comparison","VAPA|GeneID=9218"]
["chr18",11871515,11871515,1,1,"  assembly comparison","GNAL|GeneID=2774"]
["chr18",11872703,11872703,1,1,"  assembly comparison","GNAL|GeneID=2774"]
["chr18",11898455,11898455,19,1,"  assembly comparison","MPPE1|GeneID=65258"]
["chr18",12437282,12437282,1,1,"  assembly comparison","SPIRE1|GeneID=56907"]
["chr18",13873732,13873732,2,1,"  assembly comparison","MC2R|GeneID=4158"]
["chr18",17354760,17354760,3,1,"  assembly comparison","KIAA1772|GeneID=80000"]
["chr18",17699878,17699878,13,1,"  assembly comparison","MIB1|GeneID=57534"]
["chr18",19130738,19130738,1,1,"  assembly comparison","C18orf45|GeneID=85019"]
["chr18",19131532,19131532,1,1,"  assembly comparison","C18orf45|GeneID=85019"]
["chr18",19997047,19997047,1,1,"  assembly comparison","OSBPL1A|GeneID=114876"]
["chr18",26824939,26824939,4,1,"  assembly comparison","DSC3|GeneID=1825"]
["chr18",26826150,26826150,1,1,"  assembly comparison","DSC3|GeneID=1825"]
["chr18",27904001,27904001,2,1,"  assembly comparison","RNF125|GeneID=54941"]
["chr18",28507008,28507008,1,1,"  assembly comparison","KLHL14|GeneID=57565"]
["chr18",31142400,31142400,2,1,"  assembly comparison","ZNF271|GeneID=10778"]
["chr18",31168623,31168623,1,1,"  assembly comparison","ZNF24|GeneID=7572"]
["chr18",31201619,31201619,6,1,"  assembly comparison","ZNF396|GeneID=252884"]
["chr18",32102663,32102663,5,1,"  assembly comparison","MOCOS|GeneID=55034"]
["chr18",32551938,32551938,1,1,"  assembly comparison","FHOD3|GeneID=80206"]
["chr18",33057020,33057020,1,1,"  assembly comparison","KIAA1328|GeneID=57536"]
["chr18",37840578,37850607,12218,1,"  mate pair","PIK3C3|GeneID=5289"]
["chr18",41585352,41585352,5,1,"  assembly comparison","SLC14A1|GeneID=6563"]
["chr18",41683063,41683063,1,1,"  assembly comparison","KIAA1632|GeneID=57724"]
["chr18",42087702,42087702,3,1,"  assembly comparison","C18orf25|GeneID=147339"]
["chr18",42813110,42814264,1155,1,"  Agilent 24M","TCEB3B|GeneID=51224"]
["chr18",43615017,43615017,4,1,"  assembly comparison","SMAD2|GeneID=4087"]
["chr18",43617948,43617948,1,1,"  assembly comparison","SMAD2|GeneID=4087"]
["chr18",45649667,45661295,11629,1,"  NimbleGen 42M","MYO5B|GeneID=4645"]
["chr18",46173102,46173102,1,1,"  assembly comparison","C18orf24|GeneID=220134"]
["chr18",46864381,46864381,2,1,"  assembly comparison","SMAD4|GeneID=4089"]
["chr18",50049958,50049958,3,1,"  assembly comparison","POLI|GeneID=11201"]
["chr18",50720373,50720373,4,1,"  assembly comparison","CCDC68|GeneID=80323"]
["chr18",53295026,53295026,1,1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53299371,53299371,1,1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53299398,53299398,1,1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53307906,53307906,4,1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53309495,53309495,7,1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53367654,53367654,3,1,"  assembly comparison","FECH|GeneID=2235"]
["chr18",54214939,54214939,1,1,"  assembly comparison","NEDD4L|GeneID=23327"]
["chr18",54216406,54216406,1,1,"  assembly comparison","NEDD4L|GeneID=23327"]
["chr18",54567010,54567010,4,1,"  assembly comparison","MALT1|GeneID=10892"]
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["chr18",58942856,58942856,1,1,"  assembly comparison","BCL2|GeneID=596"]
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["chr18",63326964,63326964,2,1,"  assembly comparison","DSEL|GeneID=92126"]
["chr18",63329100,63329100,2,1,"  assembly comparison","DSEL|GeneID=92126"]
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["chr18",70411005,70411005,2,1,"  assembly comparison","LOC400657|GeneID=400657"]
["chr18",70411063,70411063,6,1,"  assembly comparison","LOC400657|GeneID=400657"]
["chr18",70415215,70415215,5,1,"  assembly comparison","LOC400657|GeneID=400657"]
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["chr18",75997704,75997704,1,1,"  assembly comparison","ADNP2|GeneID=22850"]
["chr18",75998286,75998286,1,1,"  assembly comparison","ADNP2|GeneID=22850"]
["chr18",75999153,75999153,1,1,"  assembly comparison","ADNP2|GeneID=22850"]
["chr12",18906,18906,2,1,"  assembly comparison","FAM138D|GeneID=677784"]
["chr12",891955,891955,2,1,"  assembly comparison","RAD52|GeneID=5893"]
["chr12",892149,892149,3,1,"  assembly comparison","RAD52|GeneID=5893"]
["chr12",892168,892168,1,1,"  assembly comparison","RAD52|GeneID=5893"]
["chr12",1932613,1932613,3,1,"  assembly comparison","DCP1B|GeneID=196513"]
["chr12",2671285,2671285,14,1,"  assembly comparison","CACNA1C|GeneID=775"]
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["chr12",4280792,4280792,2,1,"  assembly comparison","CCND2|GeneID=894"]
["chr12",4281125,4281125,2,1,"  assembly comparison","CCND2|GeneID=894"]
["chr12",4337548,4337548,2,1,"  assembly comparison","C12orf5|GeneID=57103"]
["chr12",4338544,4338544,1,1,"  assembly comparison","C12orf5|GeneID=57103"]
["chr12",6307921,6307921,1,1,"  assembly comparison","PLEKHG6|GeneID=55200"]
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["chr12",6808285,6808285,1,1,"  assembly comparison","LEPREL2|GeneID=10536"]
["chr12",7202304,7202304,6,1,"  assembly comparison","CLSTN3|GeneID=9746"]
["chr12",7773300,7773300,8,1,"  assembly comparison","CLEC4C|GeneID=170482"]
["chr12",7839514,7839514,22,1,"  assembly comparison","NANOG|GeneID=79923"]
["chr12",8262543,8270349,7807,1,"  NimbleGen 42M","FAM90A1|GeneID=55138"]
["chr12",8263838,8268634,27684,1,"  mate pair","FAM90A1|GeneID=55138"]
["chr12",8981752,8981752,1,1,"  assembly comparison","PHC1|GeneID=1911"]
["chr12",9464064,9464064,10,1,"  assembly comparison","DDX12|GeneID=440081"]
["chr12",9691948,9691948,2,1,"  assembly comparison","LOC374443|GeneID=374443"]
["chr12",9739720,9739720,3,1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9739754,9739754,3,1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9741788,9741788,4,1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9743094,9743094,1,1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9776979,9776979,5,1,"  assembly comparison","CLECL1|GeneID=160365"]
["chr12",9896954,9896954,14,1,"  assembly comparison","CLEC2B|GeneID=9976"]
["chr12",9913725,9913725,8,1,"  assembly comparison","CLEC2B|GeneID=9976"]
["chr12",10029152,10029152,1,1,"  assembly comparison","CLEC12A|GeneID=160364"]
["chr12",10043029,10043029,1,1,"  assembly comparison","CLEC1B|GeneID=51266"]
["chr12",10109560,10109560,1,1,"  assembly comparison","CLEC9A|GeneID=283420"]
["chr12",10174013,10174013,4,1,"  assembly comparison","CLEC7A|GeneID=64581"]
["chr12",10202675,10202675,1,1,"  assembly comparison","OLR1|GeneID=4973"]
["chr12",10203178,10203178,4,1,"  assembly comparison","OLR1|GeneID=4973"]
["chr12",10649653,10649653,1,1,"  assembly comparison","MAGOHB|GeneID=55110"]
["chr12",10663214,10663214,4,1,"  assembly comparison","STYK1|GeneID=55359"]
["chr12",10976308,10976308,1,1,"  assembly comparison","PRH2|GeneID=5555"]
["chr12",11352820,11352820,63,1,"  assembly comparison","PRB4|GeneID=5545"]
["chr12",11397730,11397730,183,1,"  assembly comparison","PRB1|GeneID=5542"]
["chr12",11935671,11935671,2,1,"  assembly comparison","ETV6|GeneID=2120"]
["chr12",11936434,11936434,1,1,"  assembly comparison","ETV6|GeneID=2120"]
["chr12",11939500,11939500,2,1,"  assembly comparison","ETV6|GeneID=2120"]
["chr12",12164244,12164244,4,1,"  assembly comparison","LRP6|GeneID=4040"]
["chr12",13044435,13044435,16,1,"  assembly comparison","HEBP1|GeneID=50865"]
["chr12",14849323,14849323,1,1,"  assembly comparison","C12orf69|GeneID=440087"]
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["chr12",15665403,15665403,1,1,"  assembly comparison","EPS8|GeneID=2059"]
["chr12",15947194,15947194,1,1,"  assembly comparison","STRAP|GeneID=11171"]
["chr12",18326665,18326665,3,1,"  assembly comparison","PIK3C2G|GeneID=5288"]
["chr12",19420363,19420363,1,1,"  assembly comparison","PLEKHA5|GeneID=54477"]
["chr12",20725071,20725071,4,1,"  assembly comparison","PDE3A|GeneID=5139"]
["chr12",20960803,20960803,1,1,"  assembly comparison","SLCO1B3|GeneID=28234"]
["chr12",21514567,21514567,3,1,"  assembly comparison","PYROXD1|GeneID=79912"]
["chr12",22239413,22239413,1,1,"  assembly comparison","ST8SIA1|GeneID=6489"]
["chr12",22239413,22239413,3,1,"  assembly comparison","ST8SIA1|GeneID=6489"]
["chr12",22242769,22242769,6,1,"  assembly comparison","ST8SIA1|GeneID=6489"]
["chr12",22243374,22243374,2,1,"  assembly comparison","ST8SIA1|GeneID=6489"]
["chr12",24856526,24856526,1,1,"  assembly comparison","BCAT1|GeneID=586"]
["chr12",24858628,24858628,1,1,"  assembly comparison","BCAT1|GeneID=586"]
["chr12",24860807,24860807,1,1,"  assembly comparison","BCAT1|GeneID=586"]
["chr12",25251727,25251727,1,1,"  assembly comparison","KRAS|GeneID=3845"]
["chr12",25252380,25252380,1,1,"  assembly comparison","KRAS|GeneID=3845"]
["chr12",26277155,26277155,2,1,"  assembly comparison","SSPN|GeneID=8082"]
["chr12",26381194,26381194,3,1,"  assembly comparison","ITPR2|GeneID=3709"]
["chr12",27016620,27016620,1,1,"  assembly comparison","TM7SF3|GeneID=51768"]
["chr12",27017389,27017389,1,1,"  assembly comparison","TM7SF3|GeneID=51768"]
["chr12",27368451,27368451,2,1,"  assembly comparison","STK38L|GeneID=23012"]
["chr12",27739334,27739334,1,1,"  assembly comparison","PPFIBP1|GeneID=8496"]
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["chr12",28002596,28002596,1,1,"  assembly comparison","PTHLH|GeneID=5744"]
["chr12",29546551,29546551,2,1,"  assembly comparison","TMTC1|GeneID=83857"]
["chr12",31036279,31036279,3,1,"  assembly comparison","TSPAN11|GeneID=441631"]
["chr12",31429122,31429122,1,1,"  assembly comparison","DENND5B|GeneID=160518"]
["chr12",32835428,32835428,1,1,"  assembly comparison","PKP2|GeneID=5318"]
["chr12",34066581,34066581,1,1,"  assembly comparison","ALG10|GeneID=84920"]
["chr12",37004439,37004439,1,1,"  assembly comparison","ALG10B|GeneID=144245"]
["chr12",37006262,37006262,5,1,"  assembly comparison","ALG10B|GeneID=144245"]
["chr12",37007203,37007203,1,1,"  assembly comparison","ALG10B|GeneID=144245"]
["chr12",37333686,37333686,1,1,"  assembly comparison","CPNE8|GeneID=144402"]
["chr12",37333697,37333697,12,1,"  assembly comparison","CPNE8|GeneID=144402"]
["chr12",38436506,38436506,1,1,"  assembly comparison","SLC2A13|GeneID=114134"]
["chr12",41127201,41127201,2,1,"  assembly comparison","PPHLN1|GeneID=51535"]
["chr12",44109809,44109809,5,1,"  assembly comparison","ANO6|GeneID=196527"]
["chr12",44112277,44112277,5,1,"  assembly comparison","ANO6|GeneID=196527"]
["chr12",44670666,44670666,1,1,"  assembly comparison","SFRS2IP|GeneID=9169"]
["chr12",44949220,44949220,1,1,"  assembly comparison","SLC38A1|GeneID=81539"]
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["chr12",45756492,45756492,5,1,"  assembly comparison","AMIGO2|GeneID=347902"]
["chr12",46865044,46865044,1,1,"  assembly comparison","C12orf68|GeneID=387856"]
["chr12",47368870,47368870,1,1,"  assembly comparison","LOC144438|GeneID=144438"]
["chr12",47618718,47618718,2,1,"  assembly comparison","ARF3|GeneID=377"]
["chr12",47618975,47618975,1,1,"  assembly comparison","ARF3|GeneID=377"]
["chr12",48699150,48702019,3878,1,"  mate pair","RACGAP1|GeneID=29127"]
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["chr12",49611611,49611611,1,1,"  assembly comparison","METTL7A|GeneID=25840"]
["chr12",49926690,49926690,4,1,"  assembly comparison","DAZAP2|GeneID=9802"]
["chr12",50009865,50009865,1,1,"  assembly comparison","ELA1|GeneID=1990"]
["chr12",50033415,50033415,3,1,"  assembly comparison","GALNT6|GeneID=11226"]
["chr12",50033964,50033964,1,1,"  assembly comparison","GALNT6|GeneID=11226"]
["chr12",50571486,50571486,2,1,"  assembly comparison","ANKRD33|GeneID=341405"]
["chr12",50913221,50913221,1,1,"  assembly comparison","KRT7|GeneID=3855"]
["chr12",50974799,51069560,94762,1,"  NimbleGen 42M","KRT86|GeneID=3892/KRT83|GeneID=3889/KRT85|GeneID=3891/KRT84|GeneID=3890"]
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["chr12",51720851,51720851,3,1,"  assembly comparison","EIF4B|GeneID=1975"]
["chr12",51721567,51721567,3,1,"  assembly comparison","EIF4B|GeneID=1975"]
["chr12",51721889,51721889,3,1,"  assembly comparison","EIF4B|GeneID=1975"]
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["chr12",52655936,52655936,18,1,"  assembly comparison","HOXC11|GeneID=3227"]
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["chr12",52735363,52735363,2,1,"  assembly comparison","HOXC4|GeneID=3221"]
["chr12",52753570,52814651,61082,1,"  NimbleGen 42M","LOC100240735|GeneID=100240735/LOC100240734|GeneID=100240734/FLJ12825|GeneID=440101/LOC400043|GeneID=400043"]
["chr12",52782708,52782708,1,1,"  assembly comparison","LOC100240734|GeneID=100240734"]
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["chr12",68210603,68211235,633,1,"  Agilent 24M","FRS2|GeneID=10818"]
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["chr12",73220131,73220131,2,1,"  assembly comparison","LOC552889|GeneID=552889"]
["chr12",73221219,73221219,1,1,"  assembly comparison","LOC552889|GeneID=552889"]
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["chr12",105057125,105057125,3,1,"  assembly comparison","NUAK1|GeneID=9891"]
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["chr12",107487225,107487225,1,1,"  assembly comparison","ISCU|GeneID=23479"]
["chr12",107974827,107974827,6,1,"  assembly comparison","USP30|GeneID=84749"]
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["chr12",115457527,115457527,1,1,"  assembly comparison","FLJ42957|GeneID=400077"]
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["chr12",116988459,116988459,1,1,"  assembly comparison","FLJ20674|GeneID=54621"]
["chr12",118563061,118563061,2,1,"  assembly comparison","LOC387890|GeneID=387890"]
["chr12",120107281,120107281,1,1,"  assembly comparison","P2RX7|GeneID=5027"]
["chr12",120162723,120162723,3,1,"  assembly comparison","CAMKK2|GeneID=10645"]
["chr12",120220379,120220379,4,1,"  assembly comparison","CAMKK2|GeneID=10645"]
["chr12",120433270,120438262,2940,1,"  mate pair","FBXL10|GeneID=84678"]
["chr12",120699090,120699090,1,1,"  assembly comparison","TMEM120B|GeneID=144404"]
["chr12",120702243,120702243,2,1,"  assembly comparison","TMEM120B|GeneID=144404"]
["chr12",120739920,120739920,1,1,"  assembly comparison","SETD1B|GeneID=23067"]
["chr12",120752819,120752819,1,1,"  assembly comparison","SETD1B|GeneID=23067"]
["chr12",120839538,120839538,1,1,"  assembly comparison","PSMD9|GeneID=5715"]
["chr12",120843790,120843790,15,1,"  assembly comparison","WDR66|GeneID=144406"]
["chr12",121819752,121819752,2,1,"  assembly comparison","DENR|GeneID=8562"]
["chr12",121819813,121819813,2,1,"  assembly comparison","DENR|GeneID=8562"]
["chr12",121821676,121821676,1,1,"  assembly comparison","DENR|GeneID=8562"]
["chr12",121877258,121877258,1,1,"  assembly comparison","CCDC62|GeneID=84660"]
["chr12",122307546,122308396,851,1,"  Agilent 24M","C12orf65|GeneID=91574"]
["chr12",122758543,122758543,4,1,"  assembly comparison","TCTN2|GeneID=79867"]
["chr12",122986031,122986031,4,1,"  assembly comparison","DNAH10|GeneID=196385"]
["chr12",123375887,123375887,4,1,"  assembly comparison","NCOR2|GeneID=9612"]
["chr12",123390692,123390692,9,1,"  assembly comparison","NCOR2|GeneID=9612"]
["chr12",123453048,123453048,3,1,"  assembly comparison","NCOR2|GeneID=9612"]
["chr12",127844234,127844234,2,1,"  assembly comparison","SLC15A4|GeneID=121260"]
["chr12",127844293,127844293,1,1,"  assembly comparison","SLC15A4|GeneID=121260"]
["chr12",127864687,127864687,100,1,"  split read","MGC16384|GeneID=114130"]
["chr12",129086473,129086473,4,1,"  assembly comparison","LOC100190940|GeneID=100190940"]
["chr12",129087197,129087197,3,1,"  assembly comparison","LOC100190940|GeneID=100190940"]
["chr12",130189803,130189803,1,1,"  assembly comparison","GPR133|GeneID=283383"]
["chr12",130879062,130879062,9,1,"  assembly comparison","MMP17|GeneID=4326"]
["chr12",131011205,131011205,1,1,"  assembly comparison","EP400|GeneID=57634"]
["chr12",131113090,131113090,3,1,"  assembly comparison","EP400|GeneID=57634"]
["chr12",131671299,131671299,1,1,"  assembly comparison","FBRSL1|GeneID=57666"]
["chr12",131859224,131859224,1,1,"  assembly comparison","GOLGA3|GeneID=2802"]
["chr12",131928058,131928058,2,1,"  assembly comparison","CHFR|GeneID=55743"]
["chr12",132040909,132044986,3667,1,"  mate pair","ZNF605|GeneID=90462"]
["chr15",20293996,20293996,42,1,"  assembly comparison","LOC283767|GeneID=283767"]
["chr15",20556821,20556821,1,1,"  assembly comparison","NIPA2|GeneID=81614"]
["chr15",20598211,20598211,2,1,"  assembly comparison","NIPA1|GeneID=123606"]
["chr15",20739623,20739623,4,1,"  assembly comparison","WHDC1L1|GeneID=339005"]
["chr15",21962657,21962657,3,1,"  assembly comparison","PWRN2|GeneID=791115"]
["chr15",22478076,22478076,16,1,"  assembly comparison","C15orf2|GeneID=23742"]
["chr15",22913339,22913339,2,1,"  assembly comparison","IPW|GeneID=3653"]
["chr15",24341435,24341435,4,1,"  assembly comparison","GABRB3|GeneID=2562"]
["chr15",27197181,27197181,4,1,"  assembly comparison","APBA2|GeneID=321"]
["chr15",27780232,27780232,1,1,"  assembly comparison","TJP1|GeneID=7082"]
["chr15",28457342,28505392,48051,1,"  NimbleGen 42M","CHRFAM7A|GeneID=89832"]
["chr15",29019159,29019159,5,1,"  assembly comparison","MTMR10|GeneID=54893"]
["chr15",29019769,29019769,5,1,"  assembly comparison","MTMR10|GeneID=54893"]
["chr15",29020644,29020644,4,1,"  assembly comparison","MTMR10|GeneID=54893"]
["chr15",32460115,32659731,199617,1,"  NimbleGen 42M","GOLGA8A|GeneID=23015/GOLGA8B|GeneID=440270"]
["chr15",34970576,34970576,1,1,"  assembly comparison","MEIS2|GeneID=4212"]
["chr15",34970908,34970908,1,1,"  assembly comparison","MEIS2|GeneID=4212"]
["chr15",36569232,36569232,1,1,"  assembly comparison","RASGRP1|GeneID=10125"]
["chr15",36778617,36778617,1,1,"  assembly comparison","C15orf53|GeneID=400359"]
["chr15",37332624,37332624,1,1,"  assembly comparison","C15orf54|GeneID=400360"]
["chr15",37676793,37676793,1,1,"  assembly comparison","THBS1|GeneID=7057"]
["chr15",38115089,38115089,3,1,"  assembly comparison","EIF2AK4|GeneID=440275"]
["chr15",38356282,38356282,10,1,"  assembly comparison","PAK6|GeneID=56924"]
["chr15",38437773,38437773,5,1,"  assembly comparison","DISP2|GeneID=85455"]
["chr15",39560745,39560745,1,1,"  assembly comparison","RTF1|GeneID=23168"]
["chr15",39591320,39591320,1,1,"  assembly comparison","LTK|GeneID=4058"]
["chr15",39592525,39592525,1,1,"  assembly comparison","LTK|GeneID=4058"]
["chr15",39848384,39848384,3,1,"  assembly comparison","MGA|GeneID=23269"]
["chr15",39906618,39906618,2,1,"  assembly comparison","MAPKBP1|GeneID=23005"]
["chr15",40290641,40290641,1,1,"  assembly comparison","TMEM87A|GeneID=25963"]
["chr15",40647529,40647529,1,1,"  assembly comparison","CEP27|GeneID=55142"]
["chr15",41439844,41439844,1,1,"  assembly comparison","ZSCAN29|GeneID=146050"]
["chr15",41440140,41440140,1,1,"  assembly comparison","ZSCAN29|GeneID=146050"]
["chr15",45851879,45851879,2,1,"  assembly comparison","SEMA6D|GeneID=80031"]
["chr15",46903914,46903914,1,1,"  assembly comparison","SHC4|GeneID=399694"]
["chr15",46904426,46904426,1,1,"  assembly comparison","SHC4|GeneID=399694"]
["chr15",47068630,47068630,1,1,"  assembly comparison","SECISBP2L|GeneID=9728"]
["chr15",47070378,47070378,1,1,"  assembly comparison","SECISBP2L|GeneID=9728"]
["chr15",48579095,48579095,1,1,"  assembly comparison","USP8|GeneID=9101"]
["chr15",50201012,50201012,4,1,"  assembly comparison","GNB5|GeneID=10681"]
["chr15",50389362,50389362,6,1,"  assembly comparison","MYO5A|GeneID=4644"]
["chr15",50391431,50391431,9,1,"  assembly comparison","MYO5A|GeneID=4644"]
["chr15",50626634,50631148,4515,1,"  NimbleGen 42M","ARPP-19|GeneID=10776"]
["chr15",51594539,51594539,42,1,"  assembly comparison","WDR72|GeneID=256764"]
["chr15",51594554,51594554,42,1,"  assembly comparison","WDR72|GeneID=256764"]
["chr15",51594595,51594595,6,1,"  assembly comparison","WDR72|GeneID=256764"]
["chr15",52707907,52707907,5,1,"  assembly comparison","UNC13C|GeneID=440279"]
["chr15",53907274,53907274,5,1,"  assembly comparison","NEDD4|GeneID=4734"]
["chr15",56640458,56641579,1122,1,"  Agilent 24M","LIPC|GeneID=3990"]
["chr15",58499653,58499653,1,1,"  assembly comparison","NARG2|GeneID=79664"]
["chr15",58571517,58571517,3,1,"  assembly comparison","RORA|GeneID=6095"]
["chr15",58574079,58574079,1,1,"  assembly comparison","RORA|GeneID=6095"]
["chr15",58575362,58575362,1,1,"  assembly comparison","RORA|GeneID=6095"]
["chr15",59933546,59933546,1,1,"  assembly comparison","VPS13C|GeneID=54832"]
["chr15",60149095,60149095,3,1,"  assembly comparison","FAM148A|GeneID=145741"]
["chr15",61149559,61149559,16,1,"  assembly comparison","TPM1|GeneID=7168"]
["chr15",61150474,61150474,10,1,"  assembly comparison","TPM1|GeneID=7168"]
["chr15",62217593,62217593,1,1,"  assembly comparison","SNX1|GeneID=6642"]
["chr15",62219883,62219883,1,1,"  assembly comparison","SNX1|GeneID=6642"]
["chr15",62220278,62220278,16,1,"  assembly comparison","SNX1|GeneID=6642"]
["chr15",62235085,62235085,1,1,"  assembly comparison","SNX22|GeneID=79856/PPIB|GeneID=5479"]
["chr15",62444265,62444265,1,1,"  assembly comparison","KIAA0101|GeneID=9768"]
["chr15",63036857,63036857,3,1,"  assembly comparison","ANKDD1A|GeneID=348094"]
["chr15",63082375,63082375,1,1,"  assembly comparison","MTFMT|GeneID=123263"]
["chr15",63407708,63407708,1,1,"  assembly comparison","IGDCC3|GeneID=9543"]
["chr15",68177208,68177208,2,1,"  assembly comparison","TLE3|GeneID=7090"]
["chr15",69859250,69859250,2,1,"  assembly comparison","THSD4|GeneID=79875"]
["chr15",69905442,69905442,5,1,"  assembly comparison","MYO9A|GeneID=4649"]
["chr15",69905494,69905494,4,1,"  assembly comparison","MYO9A|GeneID=4649"]
["chr15",70726897,70750213,23317,1,"  NimbleGen 42M","GOLGA6B|GeneID=55889"]
["chr15",71401174,71401174,1,1,"  assembly comparison","HCN4|GeneID=10021"]
["chr15",72150046,72170021,19976,1,"  NimbleGen 42M","GOLGA6|GeneID=342096"]
["chr15",72282608,72282608,2,1,"  assembly comparison","STRA6|GeneID=64220"]
["chr15",72445369,72445369,1,1,"  assembly comparison","CYP11A1|GeneID=1583"]
["chr15",72834855,72834855,2,1,"  assembly comparison","CYP1A2|GeneID=1544"]
["chr15",73098512,73098512,2,1,"  assembly comparison","SCAMP5|GeneID=192683"]
["chr15",73286241,73286241,1,1,"  assembly comparison","C15orf39|GeneID=56905"]
["chr15",73439016,73439016,1,1,"  assembly comparison","MAN2C1|GeneID=4123"]
["chr15",73815344,73815344,23,1,"  assembly comparison","DNM1P35|GeneID=100128285"]
["chr15",73979970,73979970,3,1,"  assembly comparison","UBE2Q2|GeneID=92912"]
["chr15",75192057,75192057,2,1,"  assembly comparison","SGK269|GeneID=79834"]
["chr15",76674769,76674769,4,1,"  assembly comparison","CHRNA3|GeneID=1136"]
["chr15",80480642,80580301,99660,1,"  NimbleGen 42M","LOC100134869|GeneID=100134869/LOC100133144|GeneID=100133144/LOC440295|GeneID=440295/FLJ22795|GeneID=80154"]
["chr15",81145550,81145550,1,1,"  assembly comparison","AP3B2|GeneID=8120"]
["chr15",83002689,83002689,1,1,"  assembly comparison","NMB|GeneID=4828"]
["chr15",83214406,83214406,1,1,"  assembly comparison","ALPK3|GeneID=57538"]
["chr15",83217069,83217069,2,1,"  assembly comparison","ALPK3|GeneID=57538"]
["chr15",83239994,83239994,1,1,"  assembly comparison","SLC28A1|GeneID=9154"]
["chr15",84091610,84091610,4,1,"  assembly comparison","AKAP13|GeneID=11214"]
["chr15",84092451,84092451,1,1,"  assembly comparison","AKAP13|GeneID=11214"]
["chr15",88176742,88176742,1,1,"  assembly comparison","AP3S2|GeneID=10239"]
["chr15",88845391,88845391,1,1,"  assembly comparison","IQGAP1|GeneID=8826"]
["chr15",90963089,90963089,1,1,"  assembly comparison","FAM174B|GeneID=400451"]
["chr15",91369474,91369474,3,1,"  assembly comparison","CHD2|GeneID=1106"]
["chr15",96798424,96798424,4,1,"  assembly comparison","FAM169B|GeneID=283777"]
["chr15",96798433,96798433,1,1,"  assembly comparison","FAM169B|GeneID=283777"]
["chr15",96798443,96798443,27,1,"  assembly comparison","FAM169B|GeneID=283777"]
["chr15",96798461,96798461,19,1,"  assembly comparison","FAM169B|GeneID=283777"]
["chr15",97321214,97321214,1,1,"  assembly comparison","IGF1R|GeneID=3480"]
["chr15",97329328,97329328,1,1,"  assembly comparison","LOC145814|GeneID=145814"]
["chr15",97463630,97463630,1,1,"  assembly comparison","SYNM|GeneID=23336"]
["chr15",97491573,97491573,17,1,"  split read","SYNM|GeneID=23336"]
["chr15",97494485,97494485,3,1,"  assembly comparison","TTC23|GeneID=64927"]
["chr15",98157482,98157482,309,1,"  assembly comparison","C15orf51|GeneID=196968"]
["chr15",98331716,98331716,14,1,"  split read","ADAMTS17|GeneID=170691"]
["chr15",98331731,98331731,14,1,"  assembly comparison","ADAMTS17|GeneID=170691"]
["chr15",99609218,99609218,21,1,"  assembly comparison","CHSY1|GeneID=22856"]
["chr4",75997,75997,1,1,"  assembly comparison","ZNF595|GeneID=152687"]
["chr4",76102,76102,1,1,"  assembly comparison","ZNF595|GeneID=152687"]
["chr4",77314,77314,1,1,"  assembly comparison","ZNF595|GeneID=152687"]
["chr4",77626,77626,1,1,"  assembly comparison","ZNF595|GeneID=152687"]
["chr4",255438,255438,3,1,"  assembly comparison","hCG_1771830|GeneID=654254"]
["chr4",321694,321694,1,1,"  assembly comparison","ZNF141|GeneID=7700"]
["chr4",752262,752262,2,1,"  assembly comparison","PCGF3|GeneID=10336"]
["chr4",943518,943518,1,1,"  assembly comparison","DGKQ|GeneID=1609"]
["chr4",1181490,1181490,1,1,"  assembly comparison","LOC100130872|GeneID=100130872"]
["chr4",1181850,1181850,2,1,"  assembly comparison","LOC100130872|GeneID=100130872"]
["chr4",1183696,1183696,1,1,"  assembly comparison","LOC100130872|GeneID=100130872"]
["chr4",1370513,1370513,1,1,"  assembly comparison","KIAA1530|GeneID=57654"]
["chr4",1377405,1377405,4,1,"  assembly comparison","CRIPAK|GeneID=285464"]
["chr4",1612824,1612824,181,1,"  assembly comparison","FAM53A|GeneID=152877"]
["chr4",1783740,1783740,1,1,"  assembly comparison","LETM1|GeneID=3954"]
["chr4",1954318,1954318,4,1,"  assembly comparison","WHSC2|GeneID=7469"]
["chr4",1954534,1954534,4,1,"  assembly comparison","WHSC2|GeneID=7469"]
["chr4",2043677,2043677,1,1,"  assembly comparison","POLN|GeneID=353497"]
["chr4",3213476,3213476,3,1,"  assembly comparison","HTT|GeneID=3064"]
["chr4",4471986,4471986,3,1,"  assembly comparison","STX18|GeneID=53407"]
["chr4",4472478,4472478,1,1,"  assembly comparison","STX18|GeneID=53407"]
["chr4",4916413,4916413,1,1,"  assembly comparison","MSX1|GeneID=4487"]
["chr4",5552280,5552280,3,1,"  assembly comparison","STK32B|GeneID=55351"]
["chr4",5864787,5864787,58,1,"  assembly comparison","EVC|GeneID=2121"]
["chr4",6675081,6675081,1,1,"  assembly comparison","MAN2B2|GeneID=23324"]
["chr4",7110421,7110421,4,1,"  assembly comparison","TADA2B|GeneID=93624"]
["chr4",7484756,7484756,1,1,"  assembly comparison","PSAPL1|GeneID=768239"]
["chr4",7485485,7485485,1,1,"  assembly comparison","PSAPL1|GeneID=768239"]
["chr4",7487457,7487457,1,1,"  assembly comparison","PSAPL1|GeneID=768239"]
["chr4",7812796,7812796,1,1,"  assembly comparison","AFAP1|GeneID=60312"]
["chr4",8933780,8979982,46203,1,"  NimbleGen 42M","USP17|GeneID=391627"]
["chr4",10051022,10051022,1,1,"  assembly comparison","ZNF518B|GeneID=85460"]
["chr4",10051703,10051703,5,1,"  assembly comparison","ZNF518B|GeneID=85460"]
["chr4",10052161,10052161,1,1,"  assembly comparison","ZNF518B|GeneID=85460"]
["chr4",10052178,10052178,1,1,"  assembly comparison","ZNF518B|GeneID=85460"]
["chr4",12946131,12946131,1,1,"  assembly comparison","HSP90AB2P|GeneID=391634"]
["chr4",17122856,17122856,1,1,"  assembly comparison","QDPR|GeneID=5860"]
["chr4",17412844,17412844,1,1,"  assembly comparison","C4orf30|GeneID=54876"]
["chr4",17413376,17413376,1,1,"  assembly comparison","C4orf30|GeneID=54876"]
["chr4",17413751,17413751,1,1,"  assembly comparison","C4orf30|GeneID=54876"]
["chr4",17454613,17454613,4,1,"  assembly comparison","LCORL|GeneID=254251/NCAPG|GeneID=64151"]
["chr4",21459681,21459681,10,1,"  assembly comparison","NCRNA00099|GeneID=359822"]
["chr4",22429775,22429775,1,1,"  assembly comparison","GBA3|GeneID=57733"]
["chr4",24438924,24438924,1,1,"  assembly comparison","CCDC149|GeneID=91050"]
["chr4",24439010,24439010,1,1,"  assembly comparison","CCDC149|GeneID=91050"]
["chr4",24612288,24612288,1,1,"  assembly comparison","LGI2|GeneID=55203"]
["chr4",25287631,25287631,1,1,"  assembly comparison","SLC34A2|GeneID=10568"]
["chr4",25289407,25289407,2,1,"  assembly comparison","SLC34A2|GeneID=10568"]
["chr4",26634190,26634190,2,1,"  assembly comparison","STIM2|GeneID=57620"]
["chr4",37270225,37270225,1,1,"  assembly comparison","C4orf19|GeneID=55286"]
["chr4",37270389,37270389,1,1,"  assembly comparison","C4orf19|GeneID=55286"]
["chr4",37290339,37290339,3,1,"  assembly comparison","RELL1|GeneID=768211"]
["chr4",38644837,38644837,1,1,"  assembly comparison","TMEM156|GeneID=80008"]
["chr4",39127351,39127351,1,1,"  assembly comparison","KLB|GeneID=152831"]
["chr4",39127551,39127551,2,1,"  assembly comparison","KLB|GeneID=152831"]
["chr4",39128890,39128890,2,1,"  assembly comparison","KLB|GeneID=152831"]
["chr4",39178052,39178052,1,1,"  assembly comparison","UGDH|GeneID=7358"]
["chr4",39178117,39178117,3,1,"  assembly comparison","UGDH|GeneID=7358"]
["chr4",39228942,39228942,1,1,"  assembly comparison","C4orf34|GeneID=201895"]
["chr4",39459337,39459337,1,1,"  assembly comparison","UBE2K|GeneID=3093"]
["chr4",40120266,40120266,4,1,"  assembly comparison","RBM47|GeneID=54502"]
["chr4",40506501,40506501,3,1,"  assembly comparison","NSUN7|GeneID=79730"]
["chr4",40507375,40507375,1,1,"  assembly comparison","APBB2|GeneID=323"]
["chr4",40508296,40508296,12,1,"  split read","APBB2|GeneID=323"]
["chr4",40508427,40508427,3,1,"  assembly comparison","APBB2|GeneID=323"]
["chr4",40509398,40509398,3,1,"  assembly comparison","APBB2|GeneID=323"]
["chr4",41680040,41680040,1,1,"  assembly comparison","WDR21B|GeneID=285429"]
["chr4",41681232,41681232,3,1,"  assembly comparison","WDR21B|GeneID=285429"]
["chr4",41812382,41812382,1,1,"  assembly comparison","BEND4|GeneID=389206"]
["chr4",46086636,46086636,8,1,"  assembly comparison","GABRA2|GeneID=2555"]
["chr4",47834063,47834063,4,1,"  assembly comparison","TEC|GeneID=7006"]
["chr4",52475765,52475765,1,1,"  assembly comparison","DCUN1D4|GeneID=23142"]
["chr4",55995526,55995526,1,1,"  assembly comparison","CLOCK|GeneID=9575"]
["chr4",55995808,55995808,1,1,"  assembly comparison","CLOCK|GeneID=9575"]
["chr4",56593794,56593794,10,1,"  assembly comparison","CEP135|GeneID=9662"]
["chr4",56875348,56875348,18,1,"  assembly comparison","KIAA1211|GeneID=57482"]
["chr4",56899239,56899239,4,1,"  assembly comparison","AASDH|GeneID=132949"]
["chr4",56954471,56954471,1,1,"  assembly comparison","PPAT|GeneID=5471"]
["chr4",57217407,57217407,7,1,"  assembly comparison","HOPX|GeneID=84525"]
["chr4",68166357,68166357,1,1,"  assembly comparison","UBA6|GeneID=55236"]
["chr4",68249473,68249473,1,1,"  assembly comparison","UBA6|GeneID=55236"]
["chr4",68304180,68304180,1,1,"  assembly comparison","GNRHR|GeneID=2798"]
["chr4",68459050,68459050,1,1,"  assembly comparison","TMPRSS11A|GeneID=339967"]
["chr4",68775737,68775737,2,1,"  assembly comparison","TMPRSS11B|GeneID=132724"]
["chr4",70013156,70013156,1,1,"  assembly comparison","UGT2B7|GeneID=7364"]
["chr4",71064190,71064190,1,1,"  assembly comparison","C4orf40|GeneID=401137"]
["chr4",72654807,72654807,30,1,"  assembly comparison","SLC4A4|GeneID=8671"]
["chr4",73366404,73366404,1,1,"  assembly comparison","ADAMTS3|GeneID=9508"]
["chr4",75182192,75182192,4,1,"  assembly comparison","CXCL2|GeneID=2920"]
["chr4",75309089,75313976,3112,1,"  mate pair","MTHFD2L|GeneID=441024"]
["chr4",76623531,76623531,4,1,"  assembly comparison","RCHY1|GeneID=25898"]
["chr4",76626241,76626241,2,1,"  assembly comparison","RCHY1|GeneID=25898"]
["chr4",76673002,76673002,1,1,"  assembly comparison","THAP6|GeneID=152815"]
["chr4",76722229,76722229,1,1,"  assembly comparison","CDKL2|GeneID=8999"]
["chr4",76722245,76722245,1,1,"  assembly comparison","CDKL2|GeneID=8999"]
["chr4",76787524,76787524,18,1,"  assembly comparison","G3BP2|GeneID=9908"]
["chr4",78858223,78858223,1,1,"  assembly comparison","CNOT6L|GeneID=246175"]
["chr4",80009948,80012632,3912,1,"  mate pair","BMP2K|GeneID=55589"]
["chr4",82193799,82193799,1,1,"  assembly comparison","BMP3|GeneID=651"]
["chr4",83625595,83625595,6,1,"  assembly comparison","FLJ12993|GeneID=441027"]
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["chr2",95413681,95413681,2,1,"  assembly comparison","KCNIP3|GeneID=30818"]
["chr2",96035248,96095581,60334,1,"  NimbleGen 42M","LOC729234|GeneID=729234/LOC150763|GeneID=150763"]
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["chr2",96144724,96144724,9,1,"  assembly comparison","ADRA2B|GeneID=151"]
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["chr2",199844528,199844528,1,1,"  assembly comparison","SATB2|GeneID=23314"]
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["chr2",200503741,200503741,4,1,"  assembly comparison","C2orf60|GeneID=129450"]
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["chr2",201053323,201053323,1,1,"  assembly comparison","LOC26010|GeneID=26010"]
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["chr2",209066890,209066890,1,1,"  assembly comparison","PTH2R|GeneID=5746"]
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["chr2",213573240,213573240,4,1,"  assembly comparison","IKZF2|GeneID=22807"]
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["chr2",219027598,219027598,2,1,"  assembly comparison","USP37|GeneID=57695"]
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["chr2",223516068,223516068,4,1,"  assembly comparison","ACSL3|GeneID=2181"]
["chr2",223516215,223516215,3,1,"  assembly comparison","ACSL3|GeneID=2181"]
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["chr2",230584575,230584575,1,1,"  assembly comparison","FBXO36|GeneID=130888"]
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["chr2",231116108,231116108,1,1,"  assembly comparison","SP100|GeneID=6672"]
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["chr2",234592265,234592265,4,1,"  assembly comparison","TRPM8|GeneID=79054"]
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["chr2",238818422,238818422,1,1,"  assembly comparison","PER2|GeneID=8864"]
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["chr9",4590507,4590507,22,1,"  assembly comparison","C9orf68|GeneID=55064"]
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["chr9",27270873,27270873,1,1,"  assembly comparison","NCRNA00032|GeneID=158035"]
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["chr9",34572682,34572682,1,1,"  assembly comparison","LOC415056|GeneID=415056"]
["chr9",35844487,35844487,1,1,"  assembly comparison","C9orf127|GeneID=51754"]
["chr9",36206351,36206351,30,1,"  assembly comparison","GNE|GeneID=10020"]
["chr9",37429791,37429791,4,1,"  assembly comparison","ZBTB5|GeneID=9925"]
["chr9",37851258,37851258,1,1,"  assembly comparison","WDR32|GeneID=79269"]
["chr9",41876170,42014315,138146,1,"  NimbleGen 42M","MGC21881|GeneID=389741/KGFLP2|GeneID=654466"]
["chr9",44157108,44377706,220599,1,"  NimbleGen 42M","KGFLP1|GeneID=387628"]
["chr9",68467064,68467064,2,1,"  assembly comparison","LOC440896|GeneID=440896"]
["chr9",70025289,70058857,33569,1,"  NimbleGen 42M","CBWD3|GeneID=445571"]
["chr9",70817574,70817574,2,1,"  assembly comparison","PRKACG|GeneID=5568"]
["chr9",70877575,70877575,3,1,"  assembly comparison","FXN|GeneID=2395"]
["chr9",71196631,71196631,1,1,"  assembly comparison","C9orf61|GeneID=9413"]
["chr9",71519079,71519079,1,1,"  assembly comparison","PTAR1|GeneID=375743"]
["chr9",73488367,73488367,1,1,"  assembly comparison","TMEM2|GeneID=23670"]
["chr9",74053269,74053269,1,1,"  assembly comparison","GDA|GeneID=9615"]
["chr9",74156329,74156329,5,1,"  assembly comparison","ZFAND5|GeneID=7763"]
["chr9",74158397,74158397,4,1,"  assembly comparison","ZFAND5|GeneID=7763"]
["chr9",74158702,74158702,2,1,"  assembly comparison","ZFAND5|GeneID=7763"]
["chr9",74640956,74640956,1,1,"  assembly comparison","TMC1|GeneID=117531"]
["chr9",76788002,76788002,1,1,"  assembly comparison","C9orf41|GeneID=138199"]
["chr9",76951739,76951739,1,1,"  assembly comparison","OSTF1|GeneID=26578"]
["chr9",76951791,76951791,2,1,"  assembly comparison","OSTF1|GeneID=26578"]
["chr9",77695823,77695823,23,1,"  split read","PCSK5|GeneID=5125"]
["chr9",77998155,77998155,4,1,"  assembly comparison","PCSK5|GeneID=5125"]
["chr9",78590491,78590491,2,1,"  assembly comparison","PCA3|GeneID=50652"]
["chr9",85052131,85052131,2,1,"  assembly comparison","FRMD3|GeneID=257019"]
["chr9",90452166,90452166,3,1,"  assembly comparison","LOC286238|GeneID=286238"]
["chr9",90797872,90797872,1,1,"  assembly comparison","C9orf47|GeneID=286223"]
["chr9",90817890,90817890,1,1,"  assembly comparison","SHC3|GeneID=53358"]
["chr9",91184001,91184001,1,1,"  assembly comparison","SEMA4D|GeneID=10507"]
["chr9",92412919,92412919,1,1,"  assembly comparison","DIRAS2|GeneID=54769"]
["chr9",94276889,94276889,3,1,"  assembly comparison","ASPN|GeneID=54829"]
["chr9",96405242,96405242,1,1,"  assembly comparison","FBP1|GeneID=2203"]
["chr9",97310490,97310490,3,1,"  assembly comparison","PTCH1|GeneID=5727"]
["chr9",97612403,97612403,1,1,"  assembly comparison","C9orf130|GeneID=100128782"]
["chr9",98619193,98619193,1,1,"  assembly comparison","ZNF782|GeneID=158431"]
["chr9",98748215,98748215,1,1,"  assembly comparison","HIATL2|GeneID=84278"]
["chr9",99132804,99132804,6,1,"  assembly comparison","KIAA1529|GeneID=57653"]
["chr9",100092371,100092371,2,1,"  assembly comparison","GABBR2|GeneID=9568"]
["chr9",100872084,100872084,1,1,"  assembly comparison","COL15A1|GeneID=1306"]
["chr9",100872096,100872096,1,1,"  assembly comparison","COL15A1|GeneID=1306"]
["chr9",100953511,100953511,1,1,"  assembly comparison","TGFBR1|GeneID=7046"]
["chr9",101667081,101667081,3,1,"  assembly comparison","NR4A3|GeneID=8013"]
["chr9",101781349,101781349,1,1,"  assembly comparison","TXNDC4|GeneID=23071"]
["chr9",101781917,101781917,4,1,"  assembly comparison","TXNDC4|GeneID=23071"]
["chr9",101784531,101784531,1,1,"  assembly comparison","TXNDC4|GeneID=23071"]
["chr9",103126496,103126496,5,1,"  assembly comparison","RP11-35N6.1|GeneID=54886"]
["chr9",103163357,103163357,2,1,"  assembly comparison","BAAT|GeneID=570"]
["chr9",106577287,106577287,1,1,"  assembly comparison","LOC286367|GeneID=286367"]
["chr9",109133184,109133184,1,1,"  assembly comparison","RAD23B|GeneID=5887"]
["chr9",110821026,110821026,1,1,"  assembly comparison","C9orf5|GeneID=23731"]
["chr9",112002350,112002350,4,1,"  assembly comparison","C9orf152|GeneID=401546"]
["chr9",114025845,114025845,4,1,"  assembly comparison","ROD1|GeneID=9991"]
["chr9",114676878,114676878,1,1,"  assembly comparison","SNX30|GeneID=401548"]
["chr9",114965773,114965773,4,1,"  assembly comparison","SLC31A2|GeneID=1318"]
["chr9",115117784,115117784,1,1,"  assembly comparison","WDR31|GeneID=114987"]
["chr9",116822667,116822667,1,1,"  assembly comparison","TNC|GeneID=3371"]
["chr9",122559270,122559270,2,1,"  assembly comparison","FBXW2|GeneID=26190"]
["chr9",122561536,122561536,1,1,"  assembly comparison","FBXW2|GeneID=26190"]
["chr9",122655924,122655924,12,1,"  assembly comparison","LOC253039|GeneID=253039"]
["chr9",122658387,122658387,1,1,"  assembly comparison","PHF19|GeneID=26147"]
["chr9",122659910,122659910,4,1,"  assembly comparison","PHF19|GeneID=26147"]
["chr9",123895157,123895157,6,1,"  assembly comparison","TTLL11|GeneID=158135"]
["chr9",124905688,124905688,2,1,"  assembly comparison","RABGAP1|GeneID=23637"]
["chr9",124905737,124905737,4,1,"  assembly comparison","RABGAP1|GeneID=23637"]
["chr9",124906096,124906096,4,1,"  assembly comparison","RABGAP1|GeneID=23637"]
["chr9",124906113,124906113,2,1,"  assembly comparison","RABGAP1|GeneID=23637"]
["chr9",124906531,124906531,1,1,"  assembly comparison","RABGAP1|GeneID=23637"]
["chr9",124914967,124914967,6,1,"  assembly comparison","C9orf45|GeneID=81571"]
["chr9",125835224,125835224,1,1,"  assembly comparison","LHX2|GeneID=9355"]
["chr9",126612929,126612929,1,1,"  assembly comparison","OLFML2A|GeneID=169611"]
["chr9",126746586,126746586,2,1,"  assembly comparison","C9orf126|GeneID=286205"]
["chr9",126747288,126747288,2,1,"  assembly comparison","C9orf126|GeneID=286205"]
["chr9",127038199,127038199,1,1,"  assembly comparison","HSPA5|GeneID=3309"]
["chr9",127768224,127768224,1,1,"  assembly comparison","PBX3|GeneID=5090"]
["chr9",128500935,128500935,1,1,"  assembly comparison","LMX1B|GeneID=4010"]
["chr9",128677837,128682887,2405,1,"  mate pair","ZBTB34|GeneID=403341"]
["chr9",129308251,129308251,4,1,"  assembly comparison","FAM129B|GeneID=64855"]
["chr9",129743684,129743684,3,1,"  assembly comparison","FAM102A|GeneID=399665"]
["chr9",129864645,129864645,3,1,"  assembly comparison","NAIF1|GeneID=203245"]
["chr9",129930274,129930274,10,1,"  assembly comparison","PTGES2|GeneID=80142"]
["chr9",130302738,130302738,1,1,"  assembly comparison","ODF2|GeneID=4957"]
["chr9",130610508,130610508,4,1,"  assembly comparison","TBC1D13|GeneID=54662"]
["chr9",130610556,130610556,2,1,"  assembly comparison","TBC1D13|GeneID=54662"]
["chr9",130719172,130719172,2,1,"  assembly comparison","LRRC8A|GeneID=56262"]
["chr9",131540511,131540511,2,1,"  assembly comparison","PTGES|GeneID=9536"]
["chr9",131629886,131629886,4,1,"  assembly comparison","C9orf78|GeneID=51759"]
["chr9",131683593,131683593,1,1,"  assembly comparison","USP20|GeneID=10868"]
["chr9",131691183,131691183,1,1,"  assembly comparison","FNBP1|GeneID=23048"]
["chr9",131692512,131692512,2,1,"  assembly comparison","FNBP1|GeneID=23048"]
["chr9",132035713,132035713,1,1,"  assembly comparison","FREQ|GeneID=23413"]
["chr9",132038648,132038648,1,1,"  assembly comparison","FREQ|GeneID=23413"]
["chr9",132957134,132957134,2,1,"  assembly comparison","LAMC3|GeneID=10319"]
["chr9",133123351,133123351,1,1,"  assembly comparison","FAM78A|GeneID=286336"]
["chr9",134761155,134761155,1,1,"  assembly comparison","TSC1|GeneID=7248"]
["chr9",135325159,135325159,6,1,"  assembly comparison","C9orf7|GeneID=11094"]
["chr9",135887281,135887281,2,1,"  assembly comparison","BRD3|GeneID=8019"]
["chr9",136013802,136013802,1,1,"  assembly comparison","WDR5|GeneID=11091"]
["chr9",136874843,136874843,4,1,"  assembly comparison","COL5A1|GeneID=1289"]
["chr9",138239960,138239960,29,1,"  assembly comparison","QSOX2|GeneID=169714"]
["chr9",138447428,138447428,18,1,"  assembly comparison","INPP5E|GeneID=56623"]
["chr9",138509891,138509891,1,1,"  assembly comparison","NOTCH1|GeneID=4851"]
["chr9",138863458,138863458,1,1,"  assembly comparison","PHPT1|GeneID=29085"]
["chr9",138940674,138940674,2,1,"  assembly comparison","TRAF2|GeneID=7186"]
["chr9",139092838,139093315,478,1,"  Agilent 24M","UAP1L1|GeneID=91373"]
["chr9",139314968,139314968,1,1,"  assembly comparison","NRARP|GeneID=441478"]
["chr9",139476274,139476274,1,1,"  assembly comparison","PNPLA7|GeneID=375775"]
["chr9",139512320,139516885,2664,1,"  mate pair","PNPLA7|GeneID=375775"]
["chr9",139777456,139777456,9,1,"  assembly comparison","FLJ40292|GeneID=643210"]
["chr13",18517071,18528108,11038,1,"  NimbleGen 42M","DKFZp686A1627|GeneID=266695"]
["chr13",18524898,18524898,2,1,"  assembly comparison","DKFZp686A1627|GeneID=266695"]
["chr13",19558939,19558939,2,1,"  assembly comparison","ZMYM2|GeneID=7750"]
["chr13",20255504,20255504,1,1,"  assembly comparison","XPO4|GeneID=64328"]
["chr13",20460505,20460505,6,1,"  assembly comparison","LATS2|GeneID=26524"]
["chr13",20649533,20649533,1,1,"  assembly comparison","MRP63|GeneID=78988"]
["chr13",20848435,20849590,3846,1,"  mate pair","ZDHHC20|GeneID=253832"]
["chr13",21173848,21173848,4,1,"  assembly comparison","FGF9|GeneID=2254"]
["chr13",24354631,24354631,1,1,"  assembly comparison","CENPJ|GeneID=55835"]
["chr13",24355004,24355004,3,1,"  assembly comparison","CENPJ|GeneID=55835"]
["chr13",24403458,24403458,7,1,"  assembly comparison","RP11-756A22.3|GeneID=646405"]
["chr13",24405063,24405063,2,1,"  assembly comparison","RP11-756A22.3|GeneID=646405"]
["chr13",24405074,24405074,1,1,"  assembly comparison","RP11-756A22.3|GeneID=646405"]
["chr13",26159847,26159847,2,1,"  assembly comparison","WASF3|GeneID=10810"]
["chr13",26159874,26159874,1,1,"  assembly comparison","WASF3|GeneID=10810"]
["chr13",28975890,28975890,1,1,"  assembly comparison","KIAA0774|GeneID=23281"]
["chr13",28984115,28984115,1,1,"  assembly comparison","SLC7A1|GeneID=6541"]
["chr13",28985015,28985015,38,1,"  assembly comparison","SLC7A1|GeneID=6541"]
["chr13",29238024,29238024,4,1,"  assembly comparison","UBL3|GeneID=5412"]
["chr13",29677774,29677774,2,1,"  assembly comparison","KATNAL1|GeneID=84056"]
["chr13",29779158,29779158,2,1,"  assembly comparison","KATNAL1|GeneID=84056"]
["chr13",30802693,30802693,1,1,"  assembly comparison","B3GALTL|GeneID=145173"]
["chr13",31643181,31643181,1,1,"  assembly comparison","FRY|GeneID=10129"]
["chr13",31768750,31768750,1,1,"  assembly comparison","FRY|GeneID=10129"]
["chr13",32247250,32247250,8,1,"  assembly comparison","PDS5B|GeneID=23047"]
["chr13",35143526,35143526,1,1,"  assembly comparison","NBEA|GeneID=26960"]
["chr13",37035290,37035290,16,1,"  split read","POSTN|GeneID=10631"]
["chr13",39261719,39261719,28,1,"  assembly comparison","COG6|GeneID=57511"]
["chr13",40270431,40270431,2,1,"  assembly comparison","SUGT1L1|GeneID=283507"]
["chr13",40848540,40848540,1,1,"  assembly comparison","NARG1L|GeneID=79612"]
["chr13",41792043,41792043,16,1,"  assembly comparison","AKAP11|GeneID=11215"]
["chr13",42261805,42261805,6,1,"  assembly comparison","C13orf30|GeneID=144809"]
["chr13",42360244,42360244,1,1,"  assembly comparison","EPSTI1|GeneID=94240"]
["chr13",43309013,43309013,1,1,"  assembly comparison","CCDC122|GeneID=160857"]
["chr13",48873702,48873702,2,1,"  assembly comparison","CAB39L|GeneID=81617"]
["chr13",49004551,49004551,1,1,"  assembly comparison","RCBTB1|GeneID=55213"]
["chr13",49005226,49005226,15,1,"  assembly comparison","RCBTB1|GeneID=55213"]
["chr13",49173353,49173353,1,1,"  assembly comparison","KPNA3|GeneID=3839"]
["chr13",49486498,49486498,14,1,"  assembly comparison","TRIM13|GeneID=10206"]
["chr13",60883150,60883150,2,1,"  assembly comparison","PCDH20|GeneID=64881"]
["chr13",65776419,65776419,1,1,"  assembly comparison","PCDH9|GeneID=5101"]
["chr13",65776539,65776539,1,1,"  assembly comparison","PCDH9|GeneID=5101"]
["chr13",69611518,69611518,3,1,"  assembly comparison","ATXN8OS|GeneID=6315"]
["chr13",72228319,72228319,24,1,"  assembly comparison","C13orf34|GeneID=79866/DIS3|GeneID=22894"]
["chr13",72488346,72488346,4,1,"  assembly comparison","PIBF1|GeneID=10464"]
["chr13",74997354,74997354,6,1,"  assembly comparison","COMMD6|GeneID=170622"]
["chr13",75330183,75330183,1,1,"  assembly comparison","LMO7|GeneID=4008"]
["chr13",76353924,76353924,4,1,"  assembly comparison","KCTD12|GeneID=115207"]
["chr13",76358420,76358420,6,1,"  assembly comparison","KCTD12|GeneID=115207"]
["chr13",78792106,78792106,2,1,"  assembly comparison","RBM26|GeneID=64062"]
["chr13",79025354,79025354,2,1,"  assembly comparison","NDFIP2|GeneID=54602"]
["chr13",83349511,83349511,1,1,"  assembly comparison","SLITRK1|GeneID=114798"]
["chr13",93853806,93853806,1,1,"  assembly comparison","GPC6|GeneID=10082"]
["chr13",96917943,96917943,1,1,"  assembly comparison","RAP2A|GeneID=5911"]
["chr13",99415441,99415441,1,1,"  assembly comparison","ZIC5|GeneID=85416"]
["chr13",99982001,99982001,1,1,"  assembly comparison","A2LD1|GeneID=87769"]
["chr13",100505210,100505210,2,1,"  assembly comparison","NALCN|GeneID=259232"]
["chr13",101171798,101171798,4,1,"  assembly comparison","FGF14|GeneID=2259"]
["chr13",101172222,101172222,1,1,"  assembly comparison","FGF14|GeneID=2259"]
["chr13",102144405,102150326,3018,1,"  mate pair","C13orf39|GeneID=196541"]
["chr13",102290649,102290649,1,1,"  assembly comparison","BIVM|GeneID=54841"]
["chr13",102291072,102291072,1,1,"  assembly comparison","BIVM|GeneID=54841"]
["chr13",107680751,107680751,2,1,"  assembly comparison","ABHD13|GeneID=84945"]
["chr13",107682211,107682211,3,1,"  assembly comparison","ABHD13|GeneID=84945"]
["chr13",107682466,107682466,1,1,"  assembly comparison","ABHD13|GeneID=84945"]
["chr13",109205581,109205581,1,1,"  assembly comparison","IRS2|GeneID=8660"]
["chr13",109973855,109973855,1,1,"  assembly comparison","RAB20|GeneID=55647"]
["chr13",110164208,110164208,1,1,"  assembly comparison","ING1|GeneID=3621"]
["chr13",110788424,110792106,2543,1,"  mate pair","C13orf16|GeneID=121793"]
["chr13",112587920,112587920,2,1,"  assembly comparison","ATP11A|GeneID=23250"]
["chr13",112588597,112588597,2,1,"  assembly comparison","ATP11A|GeneID=23250"]
["chr13",114110562,114110562,1,1,"  assembly comparison","ZNF828|GeneID=283489"]
["chr10",311429,311429,1,1,"  assembly comparison","DIP2C|GeneID=22982"]
["chr10",313010,313010,1,1,"  assembly comparison","DIP2C|GeneID=22982"]
["chr10",848498,848498,1,1,"  assembly comparison","LARP5|GeneID=23185"]
["chr10",1055208,1055208,1,1,"  assembly comparison","IDI2|GeneID=91734"]
["chr10",1076800,1076800,2,1,"  assembly comparison","IDI1|GeneID=3422"]
["chr10",1195783,1195783,192,1,"  assembly comparison","C10orf139|GeneID=399706"]
["chr10",1199470,1199470,42,1,"  assembly comparison","C10orf139|GeneID=399706"]
["chr10",1199618,1199618,4,1,"  assembly comparison","C10orf139|GeneID=399706"]
["chr10",1218294,1218294,41,1,"  split read","ADARB2|GeneID=105"]
["chr10",3168968,3168968,4,1,"  assembly comparison","PFKP|GeneID=5214"]
["chr10",3198566,3198566,25,1,"  split read","PITRM1|GeneID=10531"]
["chr10",5721695,5721695,65,1,"  assembly comparison","ASB13|GeneID=79754"]
["chr10",5847748,5847748,1,1,"  assembly comparison","GDI2|GeneID=2665"]
["chr10",6019500,6019500,1,1,"  assembly comparison","FBXO18|GeneID=84893"]
["chr10",7245113,7245113,4,1,"  assembly comparison","SFMBT2|GeneID=57713"]
["chr10",7837914,7837914,4,1,"  assembly comparison","KIN|GeneID=22944"]
["chr10",8136728,8136728,2,1,"  assembly comparison","GATA3|GeneID=2625"]
["chr10",11413425,11413425,2,1,"  assembly comparison","CUGBP2|GeneID=10659"]
["chr10",11415232,11415232,1,1,"  assembly comparison","CUGBP2|GeneID=10659"]
["chr10",11542655,11542655,4,1,"  assembly comparison","USP6NL|GeneID=9712"]
["chr10",11543283,11543283,4,1,"  assembly comparison","USP6NL|GeneID=9712"]
["chr10",11845844,11845844,1,1,"  assembly comparison","ECHDC3|GeneID=79746"]
["chr10",12203243,12203243,1,1,"  assembly comparison","DHTKD1|GeneID=55526"]
["chr10",13291993,13291993,1,1,"  assembly comparison","MCM10|GeneID=55388"]
["chr10",13292335,13292335,1,1,"  assembly comparison","MCM10|GeneID=55388"]
["chr10",15155683,15155683,1,1,"  assembly comparison","OLAH|GeneID=55301"]
["chr10",16603585,16603585,3,1,"  assembly comparison","C1QL3|GeneID=389941"]
["chr10",17227286,17227286,11,1,"  assembly comparison","TRDMT1|GeneID=1787"]
["chr10",18869232,18869232,3,1,"  assembly comparison","CACNB2|GeneID=783"]
["chr10",18869992,18869992,4,1,"  assembly comparison","CACNB2|GeneID=783"]
["chr10",18874816,18874816,8,1,"  assembly comparison","NSUN6|GeneID=221078"]
["chr10",21843171,21843171,1,1,"  assembly comparison","C10orf140|GeneID=387640"]
["chr10",21843444,21843444,1,1,"  assembly comparison","C10orf140|GeneID=387640"]
["chr10",21847803,21847803,2,1,"  assembly comparison","C10orf140|GeneID=387640"]
["chr10",22865674,22865674,19,1,"  assembly comparison","PIP4K2A|GeneID=5305"]
["chr10",24576073,24576073,1,1,"  assembly comparison","PRINS|GeneID=100169750"]
["chr10",24876007,24876007,1,1,"  assembly comparison","KIAA1217|GeneID=56243"]
["chr10",25931008,25931008,1,1,"  assembly comparison","GPR158|GeneID=57512"]
["chr10",26982322,26982322,1,1,"  assembly comparison","LOC731789|GeneID=731789"]
["chr10",27334455,27334455,2,1,"  assembly comparison","ANKRD26|GeneID=22852"]
["chr10",29786357,29786357,4,1,"  assembly comparison","SVIL|GeneID=6840"]
["chr10",30678236,30678236,3,1,"  assembly comparison","MTPAP|GeneID=55149"]
["chr10",31856387,31856387,2,1,"  assembly comparison","ZEB1|GeneID=6935"]
["chr10",35967351,35967351,1,1,"  assembly comparison","FZD8|GeneID=8325"]
["chr10",35967683,35967683,1,1,"  assembly comparison","FZD8|GeneID=8325"]
["chr10",38441509,38445497,2582,1,"  mate pair","ZNF37A|GeneID=7587"]
["chr10",42148833,42148833,1,1,"  assembly comparison","LOC441666|GeneID=441666"]
["chr10",42329396,42329396,2,1,"  assembly comparison","ZNF37B|GeneID=100129482"]
["chr10",42404603,42404603,1,1,"  assembly comparison","ZNF33B|GeneID=7582"]
["chr10",43010539,43010539,2,1,"  assembly comparison","RASGEF1A|GeneID=221002"]
["chr10",44819907,44819907,6,1,"  assembly comparison","ZNF22|GeneID=7570"]
["chr10",44969982,44969982,3,1,"  assembly comparison","LOC100133308|GeneID=100133308"]
["chr10",48033453,48033453,1,1,"  assembly comparison","GDF2|GeneID=2658"]
["chr10",48058653,48058653,3,1,"  assembly comparison","GDF10|GeneID=2662"]
["chr10",49860940,49860940,1,1,"  assembly comparison","WDFY4|GeneID=57705"]
["chr10",50205013,50205013,12,1,"  assembly comparison","C10orf71|GeneID=118461"]
["chr10",52421096,52421096,3,1,"  assembly comparison","PRKG1|GeneID=5592"]
["chr10",55235821,55235821,4,1,"  assembly comparison","PCDH15|GeneID=65217"]
["chr10",57787553,57787553,1,1,"  assembly comparison","ZWINT|GeneID=11130"]
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["chr5",135543401,135543401,1,1,"  assembly comparison","SMAD5|GeneID=4090"]
["chr5",135545834,135545834,2,1,"  assembly comparison","SMAD5|GeneID=4090"]
["chr5",135555069,135555069,1,1,"  assembly comparison","LOC389332|GeneID=389332"]
["chr5",136341233,136341233,1,1,"  assembly comparison","SPOCK1|GeneID=6695"]
["chr5",136342041,136342041,1,1,"  assembly comparison","SPOCK1|GeneID=6695"]
["chr5",136862818,136862818,1,1,"  assembly comparison","SPOCK1|GeneID=6695"]
["chr5",137711444,137711444,2,1,"  assembly comparison","FAM53C|GeneID=51307"]
["chr5",137770219,137781140,20488,1,"  mate pair","JMJD1B|GeneID=51780"]
["chr5",137800503,137800503,2,1,"  assembly comparison","JMJD1B|GeneID=51780"]
["chr5",138298195,138298195,3,1,"  assembly comparison","CTNNA1|GeneID=1495"]
["chr5",138670901,138670901,1,1,"  assembly comparison","MATR3|GeneID=9782"]
["chr5",138733089,138733089,3,1,"  assembly comparison","PAIP2|GeneID=51247"]
["chr5",140209841,140209841,1,1,"  assembly comparison","PCDHA9|GeneID=9752"]
["chr5",140512671,140512671,1,1,"  assembly comparison","PCDHB6|GeneID=56130"]
["chr5",140541397,140541397,8,1,"  assembly comparison","PCDHB16|GeneID=57717"]
["chr5",140548219,140548219,1,1,"  assembly comparison","PCDHB9|GeneID=56127"]
["chr5",140549953,140549953,1,1,"  assembly comparison","PCDHB9|GeneID=56127"]
["chr5",140554360,140554360,6,1,"  assembly comparison","PCDHB10|GeneID=56126"]
["chr5",141001032,141001032,3,1,"  assembly comparison","FCHSD1|GeneID=89848"]
["chr5",141305158,141305158,9,1,"  assembly comparison","PCDH12|GeneID=51294"]
["chr5",141361023,141361023,1,1,"  assembly comparison","GNPDA1|GeneID=10007"]
["chr5",141513017,141513017,1,1,"  assembly comparison","NDFIP1|GeneID=80762"]
["chr5",141671710,141671710,14,1,"  assembly comparison","SPRY4|GeneID=81848"]
["chr5",141671834,141671834,2,1,"  assembly comparison","SPRY4|GeneID=81848"]
["chr5",141952557,141952557,1,1,"  assembly comparison","FGF1|GeneID=2246"]
["chr5",142583876,142583876,2,1,"  assembly comparison","ARHGAP26|GeneID=23092"]
["chr5",142640895,142640895,2,1,"  assembly comparison","NR3C1|GeneID=2908"]
["chr5",142763208,142763208,1,1,"  assembly comparison","NR3C1|GeneID=2908"]
["chr5",145473379,145473379,1,1,"  assembly comparison","LARS|GeneID=51520"]
["chr5",145473430,145473430,1,1,"  assembly comparison","LARS|GeneID=51520"]
["chr5",146238514,146238514,18,1,"  split read","PPP2R2B|GeneID=5521"]
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["chr5",148341923,148341923,1,1,"  assembly comparison","SH3TC2|GeneID=79628"]
["chr5",148344914,148344914,1,1,"  assembly comparison","SH3TC2|GeneID=79628"]
["chr5",148352356,148352356,1,1,"  assembly comparison","SH3TC2|GeneID=79628"]
["chr5",148352378,148352378,1,1,"  assembly comparison","SH3TC2|GeneID=79628"]
["chr5",148700631,148700631,2,1,"  assembly comparison","AFAP1L1|GeneID=134265"]
["chr5",149220420,149220420,1,1,"  assembly comparison","PDE6A|GeneID=5145"]
["chr5",149413593,149413593,1,1,"  assembly comparison","CSF1R|GeneID=1436"]
["chr5",149579407,149579407,1,1,"  assembly comparison","CAMK2A|GeneID=815"]
["chr5",149579640,149579640,1,1,"  assembly comparison","CAMK2A|GeneID=815"]
["chr5",149914114,149914114,4,1,"  assembly comparison","NDST1|GeneID=3340"]
["chr5",149917688,149917688,1,1,"  assembly comparison","NDST1|GeneID=3340"]
["chr5",150020709,150020709,4,1,"  assembly comparison","MYOZ3|GeneID=91977"]
["chr5",150628435,150628435,1,1,"  assembly comparison","GM2A|GeneID=2760"]
["chr5",150628479,150628479,1,1,"  assembly comparison","GM2A|GeneID=2760"]
["chr5",150675225,150675225,3,1,"  assembly comparison","SLC36A2|GeneID=153201"]
["chr5",150676517,150676517,2,1,"  assembly comparison","SLC36A2|GeneID=153201"]
["chr5",150807494,150807494,3,1,"  assembly comparison","SLC36A1|GeneID=206358"]
["chr5",151022075,151022075,3,1,"  assembly comparison","SPARC|GeneID=6678"]
["chr5",156654444,156654444,1,1,"  assembly comparison","CYFIP2|GeneID=26999"]
["chr5",156702130,156702130,2,1,"  assembly comparison","C5orf40|GeneID=408263"]
["chr5",156752810,156752810,1,1,"  assembly comparison","CYFIP2|GeneID=26999"]
["chr5",158058239,158058239,1,1,"  assembly comparison","EBF1|GeneID=1879"]
["chr5",158459126,158459126,1,1,"  assembly comparison","EBF1|GeneID=1879"]
["chr5",158517187,158517187,2,1,"  assembly comparison","RNF145|GeneID=153830"]
["chr5",158674785,158674785,1,1,"  assembly comparison","IL12B|GeneID=3593"]
["chr5",159436676,159436676,1,1,"  assembly comparison","PWWP2A|GeneID=114825"]
["chr5",159451611,159451611,18,1,"  assembly comparison","PWWP2A|GeneID=114825"]
["chr5",159761597,159761597,2,1,"  assembly comparison","SLU7|GeneID=10569"]
["chr5",161515071,161515071,2,1,"  assembly comparison","GABRG2|GeneID=2566"]
["chr5",169465710,169465710,1,1,"  assembly comparison","FOXI1|GeneID=2299"]
["chr5",171222044,171222044,1,1,"  assembly comparison","FBXW11|GeneID=23291"]
["chr5",171695049,171695049,1,1,"  assembly comparison","SH3PXD2B|GeneID=285590"]
["chr5",171696706,171696706,1,1,"  assembly comparison","SH3PXD2B|GeneID=285590"]
["chr5",171696858,171696858,1,1,"  assembly comparison","SH3PXD2B|GeneID=285590"]
["chr5",172046886,172046886,4,1,"  assembly comparison","NEURL1B|GeneID=54492"]
["chr5",172051119,172051119,1,1,"  assembly comparison","NEURL1B|GeneID=54492"]
["chr5",172312142,172312142,2,1,"  assembly comparison","ERGIC1|GeneID=57222"]
["chr5",174090198,174090198,1,1,"  assembly comparison","MSX2|GeneID=4488"]
["chr5",175041298,175041298,1,1,"  assembly comparison","HRH2|GeneID=3274"]
["chr5",175598037,175598037,1,1,"  assembly comparison","C5orf25|GeneID=375484"]
["chr5",175896629,175896629,1,1,"  assembly comparison","RNF44|GeneID=22838"]
["chr5",175979852,175979852,1,1,"  assembly comparison","SNCB|GeneID=6620"]
["chr5",176659676,176659676,1,1,"  assembly comparison","NSD1|GeneID=64324"]
["chr5",178276246,178276246,1,1,"  assembly comparison","ZFP2|GeneID=80108"]
["chr5",178973967,178973967,1,1,"  assembly comparison","HNRNPH1|GeneID=3187"]
["chr5",178974413,178974413,1,1,"  assembly comparison","HNRNPH1|GeneID=3187"]
["chr5",179004420,179004420,3,1,"  assembly comparison","LOC285679|GeneID=285679"]
["chr5",179134939,179134939,1,1,"  assembly comparison","MAML1|GeneID=9794"]
["chr5",179157175,179157175,1,1,"  assembly comparison","MGAT4B|GeneID=11282"]
["chr5",179196387,179196387,2,1,"  assembly comparison","SQSTM1|GeneID=8878"]
["chr5",179935498,179935498,1,1,"  assembly comparison","CNOT6|GeneID=57472"]
["chr5",179936768,179936768,4,1,"  assembly comparison","CNOT6|GeneID=57472"]
["chr5",179936802,179936802,8,1,"  assembly comparison","CNOT6|GeneID=57472"]
["chr5",180341625,180363650,22026,1,"  Agilent 24M","hCG_18385|GeneID=646227/BTNL3|GeneID=10917"]
["chr5",180404901,180406327,4564,1,"  mate pair","BTNL9|GeneID=153579"]
["chr5",180419503,180419503,1,1,"  assembly comparison","BTNL9|GeneID=153579"]
["chr5",180420551,180420551,4,1,"  assembly comparison","BTNL9|GeneID=153579"]