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["Table S17. List of HuRef losses that overlap with exons of RefSeq genes."]
["chrom","start","end","size","type","method","gene"]
["chr7",504032,504036,4,-1,"  assembly comparison","PDGFA|GeneID=5154"]
["chr7",880526,880530,4,-1,"  assembly comparison","UNC84A|GeneID=23353"]
["chr7",972326,972327,1,-1,"  assembly comparison","COX19|GeneID=90639"]
["chr7",1144362,1144381,19,-1,"  assembly comparison","C7orf50|GeneID=84310"]
["chr7",1575555,1575556,1,-1,"  assembly comparison","PSMG3|GeneID=84262"]
["chr7",2279456,2289012,3116,-1,"  mate pair","SNX8|GeneID=29886"]
["chr7",2618742,2618758,16,-1,"  assembly comparison","IQCE|GeneID=23288"]
["chr7",4272738,4272739,1,-1,"  assembly comparison","SDK1|GeneID=221935"]
["chr7",4777055,4777059,4,-1,"  assembly comparison","FOXK1|GeneID=221937"]
["chr7",5486704,5486715,11,-1,"  assembly comparison","FBXL18|GeneID=80028"]
["chr7",6408667,6408668,1,-1,"  assembly comparison","RAC1|GeneID=5879"]
["chr7",6468358,6468362,4,-1,"  assembly comparison","KDELR2|GeneID=11014"]
["chr7",8072637,8100811,9728,-1,"  mate pair","GLCCI1|GeneID=113263"]
["chr7",8093152,8093154,2,-1,"  assembly comparison","GLCCI1|GeneID=113263"]
["chr7",8094422,8094426,4,-1,"  assembly comparison","GLCCI1|GeneID=113263"]
["chr7",9640455,9640456,1,-1,"  assembly comparison","PER4|GeneID=168741"]
["chr7",12238901,12238905,4,-1,"  assembly comparison","TMEM106B|GeneID=54664"]
["chr7",12696463,12696464,1,-1,"  assembly comparison","ARL4A|GeneID=10124"]
["chr7",12696775,12696776,1,-1,"  assembly comparison","ARL4A|GeneID=10124"]
["chr7",13995232,13995233,1,-1,"  assembly comparison","ETV1|GeneID=2115"]
["chr7",14182870,14182875,5,-1,"  assembly comparison","DGKB|GeneID=1607"]
["chr7",16759954,16759957,3,-1,"  assembly comparison","TSPAN13|GeneID=27075"]
["chr7",17350835,17350836,1,-1,"  assembly comparison","AHR|GeneID=196"]
["chr7",17352031,17352032,1,-1,"  assembly comparison","AHR|GeneID=196"]
["chr7",18034006,18034008,2,-1,"  assembly comparison","PRPS1L1|GeneID=221823"]
["chr7",19122027,19122028,1,-1,"  assembly comparison","TWIST1|GeneID=7291"]
["chr7",19151271,19151274,3,-1,"  assembly comparison","FERD3L|GeneID=222894"]
["chr7",20146008,20146010,2,-1,"  assembly comparison","MACC1|GeneID=346389"]
["chr7",20146971,20146973,2,-1,"  assembly comparison","MACC1|GeneID=346389"]
["chr7",20419101,20419102,1,-1,"  assembly comparison","ITGB8|GeneID=3696"]
["chr7",20421145,20421146,1,-1,"  assembly comparison","ITGB8|GeneID=3696"]
["chr7",20788997,20788999,2,-1,"  assembly comparison","SP8|GeneID=221833"]
["chr7",21907086,21907090,4,-1,"  assembly comparison","CDCA7L|GeneID=55536"]
["chr7",21907909,21907916,7,-1,"  assembly comparison","CDCA7L|GeneID=55536/DNAH11|GeneID=8701"]
["chr7",21908118,21908122,4,-1,"  assembly comparison","CDCA7L|GeneID=55536"]
["chr7",21908390,21908394,4,-1,"  assembly comparison","CDCA7L|GeneID=55536"]
["chr7",22124494,22124495,1,-1,"  assembly comparison","RAPGEF5|GeneID=9771"]
["chr7",26218754,26218758,4,-1,"  assembly comparison","CBX3|GeneID=11335"]
["chr7",27177106,27177107,1,-1,"  assembly comparison","HOXA10|GeneID=3206"]
["chr7",27195192,27195193,1,-1,"  assembly comparison","HOXA11AS|GeneID=221883"]
["chr7",28826829,28826830,1,-1,"  assembly comparison","CREB5|GeneID=9586"]
["chr7",28961165,28961166,1,-1,"  assembly comparison","KIAA0644|GeneID=9865"]
["chr7",28964023,28964024,1,-1,"  assembly comparison","KIAA0644|GeneID=9865"]
["chr7",29519756,29519758,2,-1,"  assembly comparison","CHN2|GeneID=1124"]
["chr7",29573130,29573131,1,-1,"  assembly comparison","PRR15|GeneID=222171"]
["chr7",29654978,29656669,1692,-1,"  split read","LOC646762|GeneID=646762"]
["chr7",29929194,29929196,2,-1,"  assembly comparison","SCRN1|GeneID=9805"]
["chr7",30640051,30640052,1,-1,"  assembly comparison","GARS|GeneID=2617"]
["chr7",30763671,30763672,1,-1,"  assembly comparison","INMT|GeneID=11185"]
["chr7",32735280,32735307,27,-1,"  assembly comparison","LOC441208|GeneID=441208"]
["chr7",32735463,32735466,3,-1,"  assembly comparison","LOC441208|GeneID=441208"]
["chr7",34159535,34159537,2,-1,"  assembly comparison","BMPER|GeneID=168667"]
["chr7",35701169,35701170,1,-1,"  assembly comparison","HERPUD2|GeneID=64224"]
["chr7",35910951,35910952,1,-1,"  assembly comparison","SEPT7|GeneID=989"]
["chr7",36159379,36159384,5,-1,"  assembly comparison","EEPD1|GeneID=80820"]
["chr7",36860684,36860685,1,-1,"  assembly comparison","ELMO1|GeneID=9844"]
["chr7",37957954,37957955,1,-1,"  assembly comparison","EPDR1|GeneID=54749"]
["chr7",38229844,38236734,3612,-1,"  mate pair","STARD3NL|GeneID=83930"]
["chr7",38238148,38356645,97500,-1,"  mate pair","TARP|GeneID=445347"]
["chr7",43636138,43647565,2733,-1,"  mate pair","C7orf44|GeneID=55744"]
["chr7",44128287,44138502,3948,-1,"  mate pair","POLD2|GeneID=5425"]
["chr7",44580137,44580138,1,-1,"  assembly comparison","DDX56|GeneID=54606"]
["chr7",44807772,44807774,2,-1,"  assembly comparison","PPIA|GeneID=5478"]
["chr7",44808957,44808959,2,-1,"  assembly comparison","PPIA|GeneID=5478"]
["chr7",44835726,44835728,2,-1,"  assembly comparison","H2AFV|GeneID=94239"]
["chr7",45115361,45115362,1,-1,"  assembly comparison","TBRG4|GeneID=9238"]
["chr7",47667005,47667006,1,-1,"  assembly comparison","C7orf65|GeneID=401335"]
["chr7",48094956,48105351,4674,-1,"  mate pair","UPP1|GeneID=7378"]
["chr7",48934757,48934758,1,-1,"  assembly comparison","CDC14C|GeneID=168448"]
["chr7",48937371,48937372,1,-1,"  assembly comparison","CDC14C|GeneID=168448"]
["chr7",50437107,50437108,1,-1,"  assembly comparison","IKZF1|GeneID=10320"]
["chr7",51064621,51064622,1,-1,"  assembly comparison","COBL|GeneID=23242"]
["chr7",56046728,56046729,1,-1,"  assembly comparison","PSPH|GeneID=5723"]
["chr7",56046790,56046791,1,-1,"  assembly comparison","PSPH|GeneID=5723"]
["chr7",64073114,64073116,2,-1,"  assembly comparison","ZNF117|GeneID=51351"]
["chr7",64073399,64073404,5,-1,"  assembly comparison","ZNF117|GeneID=51351"]
["chr7",64074253,64074255,2,-1,"  assembly comparison","ZNF117|GeneID=51351"]
["chr7",65709497,65709498,1,-1,"  assembly comparison","hCG_1983332|GeneID=441246"]
["chr7",65936334,65940148,4281,-1,"  mate pair","tcag7.967|GeneID=729156"]
["chr7",69895571,69895572,1,-1,"  assembly comparison","AUTS2|GeneID=26053"]
["chr7",71942406,71942407,1,-1,"  assembly comparison","SBDSP|GeneID=155370"]
["chr7",71974420,71974421,1,-1,"  assembly comparison","LOC441251|GeneID=441251"]
["chr7",72295149,72295150,1,-1,"  assembly comparison","GTF2IRD2P|GeneID=401375"]
["chr7",72492778,72492779,1,-1,"  assembly comparison","BAZ1B|GeneID=9031"]
["chr7",75794932,75794933,1,-1,"  assembly comparison","YWHAG|GeneID=7532"]
["chr7",77246711,77246713,2,-1,"  assembly comparison","RSBN1L|GeneID=222194"]
["chr7",80146094,80146095,1,-1,"  assembly comparison","CD36|GeneID=948"]
["chr7",82621474,82624779,3530,-1,"  mate pair","PCLO|GeneID=27445"]
["chr7",83428090,83428091,1,-1,"  assembly comparison","SEMA3A|GeneID=10371"]
["chr7",83587374,83597534,2422,-1,"  mate pair","SEMA3A|GeneID=10371"]
["chr7",83662062,83662065,3,-1,"  assembly comparison","SEMA3A|GeneID=10371"]
["chr7",87095875,87095877,2,-1,"  assembly comparison","RUNDC3B|GeneID=154661"]
["chr7",92567914,92567915,1,-1,"  assembly comparison","SAMD9|GeneID=54809"]
["chr7",92597945,92597953,8,-1,"  assembly comparison","SAMD9L|GeneID=219285"]
["chr7",94136177,94136181,4,-1,"  assembly comparison","PEG10|GeneID=23089"]
["chr7",94759162,94759164,2,-1,"  assembly comparison","PPP1R9A|GeneID=55607"]
["chr7",95052545,95052546,1,-1,"  assembly comparison","PDK4|GeneID=5166"]
["chr7",98283064,98283066,2,-1,"  assembly comparison","TMEM130|GeneID=222865"]
["chr7",98283064,98283074,12,-1,"  split read","TMEM130|GeneID=222865"]
["chr7",98283091,98283101,10,-1,"  assembly comparison","TMEM130|GeneID=222865"]
["chr7",99272013,99272014,1,-1,"  assembly comparison","CYP3A43|GeneID=64816"]
["chr7",99655746,99655747,1,-1,"  assembly comparison","PVRIG|GeneID=79037"]
["chr7",100001466,100001467,1,-1,"  assembly comparison","AGFG2|GeneID=3268"]
["chr7",100109408,100109411,3,-1,"  assembly comparison","GNB2|GeneID=2783"]
["chr7",100117073,100117074,1,-1,"  assembly comparison","GIGYF1|GeneID=64599"]
["chr7",100223498,100223533,35,-1,"  assembly comparison","ZAN|GeneID=7455"]
["chr7",100463798,100463800,3,-1,"  assembly comparison","MUC17|GeneID=140453"]
["chr7",100601181,100601192,12,-1,"  split read","C7orf52|GeneID=375607"]
["chr7",100843119,100853313,2886,-1,"  mate pair","EMID2|GeneID=136227"]
["chr7",101876347,101876348,1,-1,"  assembly comparison","ORAI2|GeneID=80228"]
["chr7",101900576,101900577,1,-1,"  assembly comparison","LRWD1|GeneID=222229/POLR2J|GeneID=5439"]
["chr7",102362241,102362244,3,-1,"  assembly comparison","LRRC17|GeneID=10234"]
["chr7",102569168,102569169,1,-1,"  assembly comparison","LOC100129424|GeneID=100129424"]
["chr7",104541296,104541297,1,-1,"  assembly comparison","MLL5|GeneID=55904"]
["chr7",105033169,105033171,2,-1,"  assembly comparison","ATXN7L1|GeneID=222255"]
["chr7",106295298,106295299,1,-1,"  assembly comparison","PIK3CG|GeneID=5294"]
["chr7",107057352,107057353,1,-1,"  assembly comparison","BCAP29|GeneID=55973"]
["chr7",107145068,107145069,1,-1,"  assembly comparison","SLC26A4|GeneID=5172"]
["chr7",107145069,107145071,2,-1,"  assembly comparison","SLC26A4|GeneID=5172"]
["chr7",107186419,107186420,1,-1,"  assembly comparison","CBLL1|GeneID=79872"]
["chr7",107188588,107188593,5,-1,"  assembly comparison","CBLL1|GeneID=79872"]
["chr7",107991234,107991247,13,-1,"  assembly comparison","THAP5|GeneID=168451"]
["chr7",111908584,111908588,4,-1,"  assembly comparison","C7orf53|GeneID=286006"]
["chr7",114117435,114117437,2,-1,"  assembly comparison","FOXP2|GeneID=93986"]
["chr7",115935643,115935644,1,-1,"  assembly comparison","CAV2|GeneID=858"]
["chr7",117094530,117094531,1,-1,"  assembly comparison","CFTR|GeneID=1080"]
["chr7",117669785,117669786,1,-1,"  assembly comparison","ANKRD7|GeneID=56311"]
["chr7",121440625,121440628,3,-1,"  assembly comparison","PTPRZ1|GeneID=5803"]
["chr7",122541391,122541392,1,-1,"  assembly comparison","SLC13A1|GeneID=6561"]
["chr7",122542583,122542584,1,-1,"  assembly comparison","SLC13A1|GeneID=6561"]
["chr7",123458795,123458796,1,-1,"  assembly comparison","tcag7.977|GeneID=730130"]
["chr7",123459714,123459720,6,-1,"  assembly comparison","tcag7.977|GeneID=730130"]
["chr7",127777779,127777780,1,-1,"  assembly comparison","hCG_1651889|GeneID=401399"]
["chr7",127885504,127885505,1,-1,"  assembly comparison","HIG2|GeneID=29923"]
["chr7",127929823,127929824,1,-1,"  assembly comparison","METTL2B|GeneID=55798"]
["chr7",128080143,128082301,2159,-1,"  NimbleGen 42M","tcag7.907|GeneID=402483"]
["chr7",128082544,128082545,1,-1,"  assembly comparison","tcag7.907|GeneID=402483"]
["chr7",128083106,128083107,1,-1,"  assembly comparison","tcag7.907|GeneID=402483"]
["chr7",128083339,128083345,6,-1,"  assembly comparison","tcag7.907|GeneID=402483"]
["chr7",128084205,128084209,4,-1,"  assembly comparison","tcag7.907|GeneID=402483"]
["chr7",128337920,128337921,1,-1,"  assembly comparison","CRIM2|GeneID=375616"]
["chr7",128913758,128913762,4,-1,"  assembly comparison","FAM40B|GeneID=57464"]
["chr7",128914099,128914107,8,-1,"  assembly comparison","FAM40B|GeneID=57464"]
["chr7",129182638,129182640,2,-1,"  assembly comparison","NRF1|GeneID=4899"]
["chr7",129379781,129379782,1,-1,"  assembly comparison","UBE2H|GeneID=7328"]
["chr7",129824609,129824610,1,-1,"  assembly comparison","TSGA14|GeneID=95681"]
["chr7",129932457,129932458,1,-1,"  assembly comparison","MEST|GeneID=4232"]
["chr7",129933576,129933577,1,-1,"  assembly comparison","COPG2|GeneID=26958"]
["chr7",131463200,131463203,3,-1,"  assembly comparison","PLXNA4|GeneID=91584"]
["chr7",131463832,131463844,12,-1,"  assembly comparison","PLXNA4|GeneID=91584"]
["chr7",131720086,131720090,4,-1,"  assembly comparison","PLXNA4|GeneID=91584"]
["chr7",134520200,134520201,1,-1,"  assembly comparison","WDR91|GeneID=29062"]
["chr7",135010444,135010445,1,-1,"  assembly comparison","PL-5283|GeneID=647087"]
["chr7",136204059,136204061,2,-1,"  assembly comparison","CHRM2|GeneID=1129"]
["chr7",136562754,136562755,1,-1,"  assembly comparison","PTN|GeneID=5764"]
["chr7",137210994,137210995,1,-1,"  assembly comparison","CREB3L2|GeneID=64764"]
["chr7",137211653,137211655,2,-1,"  assembly comparison","CREB3L2|GeneID=64764"]
["chr7",137263457,137263460,3,-1,"  assembly comparison","CREB3L2|GeneID=64764"]
["chr7",138380083,138380086,3,-1,"  assembly comparison","ZC3HAV1|GeneID=56829"]
["chr7",138381216,138381217,1,-1,"  assembly comparison","ZC3HAV1|GeneID=56829"]
["chr7",138382631,138382637,6,-1,"  assembly comparison","ZC3HAV1|GeneID=56829"]
["chr7",138901974,138901975,1,-1,"  assembly comparison","HIPK2|GeneID=28996"]
["chr7",138908064,138908067,3,-1,"  assembly comparison","HIPK2|GeneID=28996"]
["chr7",139434322,139434323,1,-1,"  assembly comparison","JHDM1D|GeneID=80853"]
["chr7",142161983,142179121,20357,-1,"  mate pair","PRSS2|GeneID=5645"]
["chr7",143457667,143457670,3,-1,"  assembly comparison","OR2A14|GeneID=135941"]
["chr7",147744561,147744566,5,-1,"  assembly comparison","CNTNAP2|GeneID=26047"]
["chr7",147746575,147746577,2,-1,"  assembly comparison","CNTNAP2|GeneID=26047"]
["chr7",148135649,148135650,1,-1,"  assembly comparison","EZH2|GeneID=2146"]
["chr7",148507964,148507969,5,-1,"  assembly comparison","ZNF398|GeneID=57541"]
["chr7",149106583,149119493,4224,-1,"  mate pair","SSPO|GeneID=23145"]
["chr7",154731392,154731393,1,-1,"  assembly comparison","INSIG1|GeneID=3638"]
["chr7",154987757,154987758,1,-1,"  assembly comparison","CNPY1|GeneID=285888"]
["chr7",156455729,156455730,1,-1,"  assembly comparison","NOM1|GeneID=64434"]
["chr7",156457918,156457919,1,-1,"  assembly comparison","NOM1|GeneID=64434"]
["chr7",158160260,158171029,2356,-1,"  mate pair","NCAPG2|GeneID=54892"]
["chr7",158515814,158515816,2,-1,"  assembly comparison","VIPR2|GeneID=7434"]
["chr20",74313,74315,2,-1,"  assembly comparison","DEFB126|GeneID=81623"]
["chr20",226700,226703,3,-1,"  assembly comparison","ZCCHC3|GeneID=85364"]
["chr20",257180,257181,1,-1,"  assembly comparison","SOX12|GeneID=6666"]
["chr20",694424,694433,9,-1,"  assembly comparison","C20orf54|GeneID=113278"]
["chr20",887793,887834,42,-1,"  split read","RSPO4|GeneID=343637"]
["chr20",1508244,1542529,32792,-1,"  mate pair","SIRPB1|GeneID=10326"]
["chr20",2076697,2076706,9,-1,"  assembly comparison","STK35|GeneID=140901"]
["chr20",2974358,2974363,5,-1,"  assembly comparison","GNRH2|GeneID=2797"]
["chr20",3577544,3577548,4,-1,"  assembly comparison","ATRN|GeneID=8455"]
["chr20",3734273,3734294,22,-1,"  split read","CDC25B|GeneID=994"]
["chr20",3799281,3799298,18,-1,"  split read","VISA|GeneID=57506"]
["chr20",3799305,3799323,18,-1,"  assembly comparison","VISA|GeneID=57506"]
["chr20",3861732,3861734,2,-1,"  assembly comparison","RNF24|GeneID=11237"]
["chr20",4654658,4654666,8,-1,"  assembly comparison","PRND|GeneID=23627"]
["chr20",5539597,5539598,1,-1,"  assembly comparison","RP5-1022P6.2|GeneID=56261"]
["chr20",5967908,5967923,16,-1,"  split read","CRLS1|GeneID=54675"]
["chr20",5967934,5967950,16,-1,"  assembly comparison","CRLS1|GeneID=54675"]
["chr20",10566939,10566940,1,-1,"  assembly comparison","JAG1|GeneID=182"]
["chr20",10567659,10567660,1,-1,"  assembly comparison","JAG1|GeneID=182"]
["chr20",14252947,14252948,1,-1,"  assembly comparison","FLRT3|GeneID=23767"]
["chr20",15981822,15981826,4,-1,"  assembly comparison","MACROD2|GeneID=140733"]
["chr20",17410987,17410989,2,-1,"  assembly comparison","PCSK2|GeneID=5126"]
["chr20",17542714,17542715,1,-1,"  assembly comparison","RRBP1|GeneID=6238"]
["chr20",18412419,18412432,13,-1,"  assembly comparison","POLR3F|GeneID=10621"]
["chr20",19930029,19930032,3,-1,"  assembly comparison","RIN2|GeneID=54453"]
["chr20",23011171,23011177,6,-1,"  assembly comparison","CD93|GeneID=22918"]
["chr20",23303454,23303457,3,-1,"  assembly comparison","NAPB|GeneID=63908"]
["chr20",23304146,23304149,3,-1,"  assembly comparison","NAPB|GeneID=63908"]
["chr20",25223553,25223559,6,-1,"  assembly comparison","ABHD12|GeneID=26090"]
["chr20",25374693,25374694,1,-1,"  assembly comparison","GINS1|GeneID=9837"]
["chr20",25405050,25405056,6,-1,"  assembly comparison","RP4-691N24.1|GeneID=22981"]
["chr20",29852820,29852821,1,-1,"  assembly comparison","TPX2|GeneID=22974"]
["chr20",30495251,30495252,1,-1,"  assembly comparison","C20orf112|GeneID=140688"]
["chr20",30937382,30949365,5311,-1,"  mate pair","EFCAB8|GeneID=388795"]
["chr20",31024793,31037857,4618,-1,"  mate pair","SPAG4L|GeneID=140732"]
["chr20",31074991,31074992,1,-1,"  assembly comparison","BPIL1|GeneID=80341"]
["chr20",31696733,31696734,1,-1,"  assembly comparison","CBFA2T2|GeneID=9139"]
["chr20",31750454,31757502,4188,-1,"  mate pair","PXMP4|GeneID=11264"]
["chr20",32140688,32140714,26,-1,"  assembly comparison","EIF2S2|GeneID=8894"]
["chr20",32561934,32561936,2,-1,"  assembly comparison","ITCH|GeneID=83737"]
["chr20",32766464,32766467,3,-1,"  assembly comparison","NCOA6|GeneID=23054"]
["chr20",34655098,34655102,4,-1,"  assembly comparison","TGIF2|GeneID=60436"]
["chr20",35579794,35579796,2,-1,"  assembly comparison","BLCAP|GeneID=10904"]
["chr20",40132666,40140884,4348,-1,"  mate pair","PTPRT|GeneID=11122"]
["chr20",41523422,41523428,6,-1,"  assembly comparison","SFRS6|GeneID=6431"]
["chr20",42554616,42554618,2,-1,"  assembly comparison","TTPAL|GeneID=79183"]
["chr20",42777339,42777341,2,-1,"  assembly comparison","WISP2|GeneID=8839"]
["chr20",43140236,43140238,2,-1,"  assembly comparison","STK4|GeneID=6789"]
["chr20",43388457,43388461,4,-1,"  assembly comparison","SDC4|GeneID=6385"]
["chr20",43574615,43574619,4,-1,"  assembly comparison","SPINT3|GeneID=10816"]
["chr20",43574636,43574638,2,-1,"  assembly comparison","SPINT3|GeneID=10816"]
["chr20",43946185,43946189,4,-1,"  assembly comparison","ZSWIM1|GeneID=90204"]
["chr20",43946199,43946201,2,-1,"  assembly comparison","ZSWIM1|GeneID=90204"]
["chr20",43953667,43953670,3,-1,"  assembly comparison","CTSA|GeneID=5476"]
["chr20",44013048,44019739,3230,-1,"  mate pair","ZNF335|GeneID=63925"]
["chr20",45264436,45272081,3593,-1,"  mate pair","ZMYND8|GeneID=23613"]
["chr20",45719560,45719564,4,-1,"  assembly comparison","SULF2|GeneID=55959"]
["chr20",47163381,47163382,1,-1,"  assembly comparison","STAU1|GeneID=6780"]
["chr20",47238216,47238217,1,-1,"  assembly comparison","STAU1|GeneID=6780"]
["chr20",47296827,47296829,2,-1,"  assembly comparison","ZNFX1|GeneID=57169"]
["chr20",47953846,47953862,22,-1,"  split read","SPATA2|GeneID=9825"]
["chr20",48002648,48002649,1,-1,"  assembly comparison","RNF114|GeneID=55905"]
["chr20",48131085,48131089,4,-1,"  assembly comparison","TMEM189-UBE2V1|GeneID=387522/UBE2V1|GeneID=7335"]
["chr20",48636419,48636423,4,-1,"  assembly comparison","FAM65C|GeneID=140876"]
["chr20",48802484,48802486,2,-1,"  assembly comparison","PARD6B|GeneID=84612"]
["chr20",51537233,51537239,6,-1,"  assembly comparison","TSHZ2|GeneID=128553"]
["chr20",51993910,51993911,1,-1,"  assembly comparison","BCAS1|GeneID=8537"]
["chr20",51994272,51994274,2,-1,"  assembly comparison","BCAS1|GeneID=8537"]
["chr20",55177408,55177409,1,-1,"  assembly comparison","BMP7|GeneID=655"]
["chr20",55574623,55574624,2,-1,"  assembly comparison","PCK1|GeneID=5105"]
["chr20",55574657,55574659,2,-1,"  assembly comparison","PCK1|GeneID=5105"]
["chr20",57751716,57763324,4870,-1,"  mate pair","PHACTR3|GeneID=116154"]
["chr20",57965829,57971988,4209,-1,"  mate pair","CDH26|GeneID=60437"]
["chr20",59945688,59945689,1,-1,"  assembly comparison","CDH4|GeneID=1002"]
["chr20",60142940,60142941,1,-1,"  assembly comparison","LSM14B|GeneID=149986"]
["chr20",60144595,60150018,5380,-1,"  mate pair","PSMA7|GeneID=5688"]
["chr20",60472069,60472070,1,-1,"  assembly comparison","GATA5|GeneID=140628"]
["chr20",61359318,61359338,20,-1,"  assembly comparison","FLJ16779|GeneID=100192386"]
["chr20",61359653,61359663,10,-1,"  assembly comparison","FLJ16779|GeneID=100192386"]
["chr20",61446290,61446291,1,-1,"  assembly comparison","CHRNA4|GeneID=1137"]
["chr20",61801780,61801787,7,-1,"  assembly comparison","ARFRP1|GeneID=10139"]
["chr14",18642052,19494455,852404,-1,"  Agilent 24M","POTEG|GeneID=404785/OR4Q3|GeneID=441669/OR4M1|GeneID=441670/OR4N2|GeneID=390429/OR4K2|GeneID=390431/OR4K5|GeneID=79317/OR4K1|GeneID=79544"]
["chr14",19265758,19494732,228975,-1,"  NimbleGen 42M","OR4Q3|GeneID=441669/OR4M1|GeneID=441670/OR4N2|GeneID=390429/OR4K2|GeneID=390431/OR4K5|GeneID=79317/OR4K1|GeneID=79544"]
["chr14",19598290,19598309,19,-1,"  assembly comparison","OR4L1|GeneID=122742"]
["chr14",21016984,21026207,2386,-1,"  mate pair","TOX4|GeneID=9878"]
["chr14",22814666,22814669,3,-1,"  assembly comparison","HOMEZ|GeneID=57594"]
["chr14",22864693,22864694,1,-1,"  assembly comparison","PABPN1|GeneID=8106"]
["chr14",22865057,22865058,1,-1,"  assembly comparison","PABPN1|GeneID=8106"]
["chr14",23640691,23645412,5040,-1,"  mate pair","PCK2|GeneID=5106"]
["chr14",23729251,23729253,2,-1,"  assembly comparison","TM9SF1|GeneID=10548"]
["chr14",23788241,23788263,22,-1,"  assembly comparison","TGM1|GeneID=7051"]
["chr14",23838788,23838789,1,-1,"  assembly comparison","DHRS1|GeneID=115817"]
["chr14",23852641,23852649,8,-1,"  assembly comparison","LTB4R|GeneID=1241"]
["chr14",23907185,23907186,1,-1,"  assembly comparison","NFATC4|GeneID=4776"]
["chr14",28307805,28307806,1,-1,"  assembly comparison","FOXG1|GeneID=2290"]
["chr14",28331552,28331556,4,-1,"  assembly comparison","C14orf23|GeneID=387978"]
["chr14",30434035,30434036,1,-1,"  assembly comparison","STRN3|GeneID=29966"]
["chr14",30986425,30986427,2,-1,"  assembly comparison","C14orf126|GeneID=112487"]
["chr14",31399281,31399284,3,-1,"  assembly comparison","NUBPL|GeneID=80224"]
["chr14",33342680,33342683,3,-1,"  assembly comparison","NPAS3|GeneID=64067"]
["chr14",34101686,34101687,1,-1,"  assembly comparison","SNX6|GeneID=58533"]
["chr14",34250429,34250430,1,-1,"  assembly comparison","CFL2|GeneID=1073"]
["chr14",34413570,34414229,660,-1,"  Agilent 24M","BAZ1A|GeneID=11177"]
["chr14",35166652,35166653,1,-1,"  assembly comparison","GARNL1|GeneID=253959"]
["chr14",36055787,36055788,1,-1,"  assembly comparison","NKX2-1|GeneID=7080"]
["chr14",38688872,38688873,1,-1,"  assembly comparison","TRAPPC6B|GeneID=122553"]
["chr14",38889923,38889924,1,-1,"  assembly comparison","CTAGE5|GeneID=4253"]
["chr14",49430941,49430943,2,-1,"  assembly comparison","ARF6|GeneID=382"]
["chr14",49654111,49654115,4,-1,"  assembly comparison","SOS2|GeneID=6655"]
["chr14",50791871,50791876,5,-1,"  assembly comparison","TXNDC1|GeneID=81542"]
["chr14",52583232,52583234,2,-1,"  assembly comparison","DDHD1|GeneID=80821"]
["chr14",54322132,54325882,3258,-1,"  mate pair","SAMD4A|GeneID=23034"]
["chr14",56184038,56184039,1,-1,"  assembly comparison","C14orf101|GeneID=54916"]
["chr14",57771308,57771310,2,-1,"  assembly comparison","ACTR10|GeneID=55860"]
["chr14",58906098,58906099,1,-1,"  assembly comparison","DAAM1|GeneID=23002"]
["chr14",60181998,60181999,1,-1,"  assembly comparison","SIX1|GeneID=6495"]
["chr14",60182504,60182505,1,-1,"  assembly comparison","SIX1|GeneID=6495"]
["chr14",60508347,60508349,2,-1,"  assembly comparison","TRMT5|GeneID=57570"]
["chr14",60857474,60858488,1015,-1,"  Agilent 24M","PRKCH|GeneID=5583"]
["chr14",62911105,62911109,4,-1,"  assembly comparison","PPP2R5E|GeneID=5529"]
["chr14",62911137,62911139,2,-1,"  assembly comparison","PPP2R5E|GeneID=5529"]
["chr14",64057970,64057972,2,-1,"  assembly comparison","ZBTB1|GeneID=22890"]
["chr14",64285406,64285409,3,-1,"  assembly comparison","SPTB|GeneID=6710"]
["chr14",64947967,64947970,3,-1,"  assembly comparison","LOC645431|GeneID=645431/FUT8|GeneID=2530"]
["chr14",65279426,65279427,1,-1,"  assembly comparison","FUT8|GeneID=2530"]
["chr14",68325398,68325399,2,-1,"  assembly comparison","ZFP36L1|GeneID=677"]
["chr14",68325409,68325410,1,-1,"  assembly comparison","ZFP36L1|GeneID=677"]
["chr14",68778782,68778785,3,-1,"  assembly comparison","EXDL2|GeneID=55218"]
["chr14",68996025,68996026,1,-1,"  assembly comparison","SLC39A9|GeneID=55334"]
["chr14",69580847,69580848,1,-1,"  assembly comparison","SLC8A3|GeneID=6547"]
["chr14",69905181,69905187,6,-1,"  assembly comparison","SYNJ2BP|GeneID=55333"]
["chr14",73071204,73092312,21109,-1,"  Agilent 24M","ACOT1|GeneID=641371"]
["chr14",73236824,73236825,1,-1,"  assembly comparison","DNAL1|GeneID=83544"]
["chr14",73253164,73253166,2,-1,"  assembly comparison","C14orf43|GeneID=91748"]
["chr14",74198068,74198070,2,-1,"  assembly comparison","KIAA0317|GeneID=9870"]
["chr14",74299944,74300704,761,-1,"  Agilent 24M","YLPM1|GeneID=56252"]
["chr14",75517534,75517535,1,-1,"  assembly comparison","TGFB3|GeneID=7043"]
["chr14",76561032,76561039,7,-1,"  assembly comparison","C14orf4|GeneID=64207"]
["chr14",76561085,76561088,3,-1,"  assembly comparison","C14orf4|GeneID=64207"]
["chr14",76563534,76563540,6,-1,"  assembly comparison","C14orf4|GeneID=64207"]
["chr14",76651350,76651351,1,-1,"  assembly comparison","KIAA1737|GeneID=85457"]
["chr14",76794827,76794828,1,-1,"  assembly comparison","TMEM63C|GeneID=57156"]
["chr14",77011215,77011216,1,-1,"  assembly comparison","ISM2|GeneID=145501"]
["chr14",79734867,79734868,1,-1,"  assembly comparison","DIO2|GeneID=1734"]
["chr14",79747899,79747900,1,-1,"  assembly comparison","DIO2|GeneID=1734"]
["chr14",80814095,80814096,1,-1,"  assembly comparison","STON2|GeneID=85439"]
["chr14",87469640,87469643,3,-1,"  assembly comparison","GALC|GeneID=2581"]
["chr14",88002868,88002871,3,-1,"  assembly comparison","PTPN21|GeneID=11099"]
["chr14",88149090,88149091,1,-1,"  assembly comparison","ZC3H14|GeneID=79882"]
["chr14",89941997,89941998,1,-1,"  assembly comparison","CALM1|GeneID=801"]
["chr14",89942240,89942242,2,-1,"  assembly comparison","CALM1|GeneID=801"]
["chr14",89942254,89942255,1,-1,"  assembly comparison","CALM1|GeneID=801"]
["chr14",90757337,90767530,3426,-1,"  mate pair","C14orf159|GeneID=80017"]
["chr14",91109123,91109124,1,-1,"  assembly comparison","PP8961|GeneID=650662"]
["chr14",91596366,91596368,2,-1,"  assembly comparison","ATXN3|GeneID=4287"]
["chr14",92224292,92224295,3,-1,"  assembly comparison","RIN3|GeneID=79890"]
["chr14",92777422,92777423,1,-1,"  assembly comparison","BTBD7|GeneID=55727"]
["chr14",93254747,93254749,2,-1,"  assembly comparison","PRIMA1|GeneID=145270"]
["chr14",93470595,93470596,1,-1,"  assembly comparison","ASB2|GeneID=51676"]
["chr14",93583022,93583023,1,-1,"  assembly comparison","OTUB2|GeneID=78990"]
["chr14",94624870,94624872,2,-1,"  assembly comparison","DICER1|GeneID=23405"]
["chr14",94626273,94626274,1,-1,"  assembly comparison","DICER1|GeneID=23405"]
["chr14",94944346,94944347,1,-1,"  assembly comparison","C14orf139|GeneID=79686"]
["chr14",95199970,95199972,2,-1,"  assembly comparison","TCL6|GeneID=27004"]
["chr14",95628715,95628716,1,-1,"  assembly comparison","C14orf132|GeneID=56967"]
["chr14",95740978,95740987,9,-1,"  assembly comparison","BDKRB2|GeneID=624"]
["chr14",98709676,98709677,1,-1,"  assembly comparison","BCL11B|GeneID=64919"]
["chr14",99683562,99691116,4574,-1,"  mate pair","DEGS2|GeneID=123099"]
["chr14",100487947,100487948,1,-1,"  assembly comparison","SNORD114-2|GeneID=767578"]
["chr14",101878310,101878314,5,-1,"  assembly comparison","ZNF839|GeneID=55778"]
["chr14",102641161,102641161,1,-1,"  assembly comparison","C14orf73|GeneID=91828"]
["chr14",102646564,102646565,1,-1,"  assembly comparison","C14orf73|GeneID=91828"]
["chr14",102672627,102672628,1,-1,"  assembly comparison","TNFAIP2|GeneID=7127"]
["chr14",103588588,103588589,1,-1,"  assembly comparison","TDRD9|GeneID=122402"]
["chr14",103716286,103716291,5,-1,"  assembly comparison","KIF26A|GeneID=26153"]
["chr14",104126182,104126191,9,-1,"  assembly comparison","C14orf180|GeneID=400258"]
["chr14",104126341,104126342,1,-1,"  assembly comparison","C14orf180|GeneID=400258"]
["chr14",104547166,104547167,1,-1,"  assembly comparison","CDCA4|GeneID=55038"]
["chr14",104547714,104547715,1,-1,"  assembly comparison","CDCA4|GeneID=55038"]
["chr14",104718610,104718627,18,-1,"  split read","NUDT14|GeneID=256281"]
["chr14",104933898,104933900,2,-1,"  assembly comparison","PACS2|GeneID=23241"]
["chr14",105452963,105632924,179962,-1,"  NimbleGen 42M","KIAA0125|GeneID=9834/ADAM6|GeneID=8755"]
["chr14",105461629,105461630,1,-1,"  assembly comparison","KIAA0125|GeneID=9834"]
["chr14",105464413,105464419,6,-1,"  assembly comparison","KIAA0125|GeneID=9834"]
["chr14",105508082,105508119,38,-1,"  split read","ADAM6|GeneID=8755"]
["chr22",14479642,14839377,359736,-1,"  NimbleGen 42M","POTEH|GeneID=23784/OR11H1|GeneID=81061"]
["chr22",15826281,15834466,4195,-1,"  mate pair","GAB4|GeneID=128954"]
["chr22",15978159,15978163,4,-1,"  assembly comparison","CECR6|GeneID=27439"]
["chr22",16005310,16008587,2683,-1,"  mate pair","CECR5|GeneID=27440"]
["chr22",16590802,16590803,1,-1,"  assembly comparison","BCL2L13|GeneID=23786"]
["chr22",16597076,16597078,2,-1,"  assembly comparison","BID|GeneID=637"]
["chr22",16651959,16651960,1,-1,"  assembly comparison","MICAL3|GeneID=57553"]
["chr22",17357576,17357641,65,-1,"  assembly comparison","DGCR5|GeneID=26220"]
["chr22",17550750,17554155,4965,-1,"  mate pair","CLTCL1|GeneID=8218"]
["chr22",18214215,18214216,1,-1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18216855,18216856,1,-1,"  assembly comparison","C22orf29|GeneID=79680"]
["chr22",18243164,18243165,1,-1,"  assembly comparison","TXNRD2|GeneID=10587"]
["chr22",18479243,18479245,2,-1,"  assembly comparison","DGCR8|GeneID=54487"]
["chr22",18840113,18840116,3,-1,"  assembly comparison","RIMBP3|GeneID=85376"]
["chr22",19572638,19572646,8,-1,"  assembly comparison","SNAP29|GeneID=9342"]
["chr22",19637737,19637740,3,-1,"  assembly comparison","CRKL|GeneID=1399"]
["chr22",19700253,19700254,1,-1,"  assembly comparison","P2RX6|GeneID=9127"]
["chr22",20134526,20134527,1,-1,"  assembly comparison","HIC2|GeneID=23119"]
["chr22",21171801,21171803,2,-1,"  assembly comparison","ZNF280B|GeneID=140883"]
["chr22",22063562,22063563,1,-1,"  assembly comparison","ZDHHC8P|GeneID=150244"]
["chr22",22063857,22063858,1,-1,"  assembly comparison","ZDHHC8P|GeneID=150244"]
["chr22",22294302,22294305,3,-1,"  assembly comparison","LOC51233|GeneID=51233"]
["chr22",22351751,22359707,4336,-1,"  mate pair","LOC91316|GeneID=91316"]
["chr22",22355617,22357537,1921,-1,"  split read","LOC91316|GeneID=91316"]
["chr22",22456466,22456467,1,-1,"  assembly comparison","MMP11|GeneID=4320"]
["chr22",22506960,22506961,1,-1,"  assembly comparison","DERL3|GeneID=91319"]
["chr22",22603801,22641930,37320,-1,"  mate pair","GSTT2B|GeneID=653689/GSTT2|GeneID=2953/DDTL|GeneID=100037417"]
["chr22",22670662,22670663,1,-1,"  assembly comparison","GSTTP1|GeneID=25774"]
["chr22",22945638,22945641,3,-1,"  assembly comparison","GGT5|GeneID=2687"]
["chr22",22990711,22990712,1,-1,"  assembly comparison","POM121L9P|GeneID=29774"]
["chr22",23135586,23142738,4550,-1,"  mate pair","CYTSA|GeneID=23384"]
["chr22",24088140,24088150,10,-1,"  assembly comparison","LRP5L|GeneID=91355"]
["chr22",25169387,25169388,1,-1,"  assembly comparison","ASPHD2|GeneID=57168"]
["chr22",25170193,25170195,2,-1,"  assembly comparison","ASPHD2|GeneID=57168"]
["chr22",25177961,25177971,10,-1,"  assembly comparison","HPS4|GeneID=89781"]
["chr22",25209946,25209967,21,-1,"  assembly comparison","SRRD|GeneID=402055"]
["chr22",27780840,27780841,1,-1,"  assembly comparison","ZNRF3|GeneID=84133"]
["chr22",27782094,27782095,1,-1,"  assembly comparison","ZNRF3|GeneID=84133"]
["chr22",28164085,28164086,1,-1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28164188,28164189,1,-1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28165622,28165623,1,-1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28167198,28167199,1,-1,"  assembly comparison","RFPL1S|GeneID=10740"]
["chr22",28167566,28167569,3,-1,"  assembly comparison","RFPL1S|GeneID=10740/RFPL1|GeneID=5988"]
["chr22",28968321,28968325,4,-1,"  assembly comparison","LIF|GeneID=3976"]
["chr22",29215727,29215728,1,-1,"  assembly comparison","SEC14L4|GeneID=284904"]
["chr22",29373403,29373404,1,-1,"  assembly comparison","SLC35E4|GeneID=339665"]
["chr22",29702066,29702067,1,-1,"  assembly comparison","TUG1|GeneID=55000"]
["chr22",30007585,30007586,1,-1,"  assembly comparison","PIK3IP1|GeneID=113791"]
["chr22",30411451,30411452,1,-1,"  assembly comparison","C22orf30|GeneID=253143"]
["chr22",30670583,30670590,7,-1,"  assembly comparison","YWHAH|GeneID=7533"]
["chr22",31587175,31587176,1,-1,"  assembly comparison","TIMP3|GeneID=7078"]
["chr22",34916216,34916222,6,-1,"  assembly comparison","APOL4|GeneID=80832"]
["chr22",34953328,34953333,5,-1,"  assembly comparison","APOL2|GeneID=23780"]
["chr22",34953660,34967529,4764,-1,"  mate pair","APOL2|GeneID=23780"]
["chr22",35938208,35938210,2,-1,"  assembly comparison","SSTR3|GeneID=6753"]
["chr22",36090283,36096077,3622,-1,"  mate pair","ELFN2|GeneID=114794"]
["chr22",36098708,36098709,1,-1,"  assembly comparison","ELFN2|GeneID=114794"]
["chr22",36294329,36294349,21,-1,"  split read","CDC42EP1|GeneID=11135"]
["chr22",36294358,36294379,21,-1,"  assembly comparison","CDC42EP1|GeneID=11135"]
["chr22",36449737,36449884,147,-1,"  assembly comparison","TRIOBP|GeneID=11078"]
["chr22",36450437,36450439,3,-1,"  assembly comparison","TRIOBP|GeneID=11078"]
["chr22",36499887,36499891,4,-1,"  assembly comparison","TRIOBP|GeneID=11078"]
["chr22",36531238,36531250,12,-1,"  assembly comparison","H1F0|GeneID=3005"]
["chr22",36532349,36532349,1,-1,"  assembly comparison","H1F0|GeneID=3005"]
["chr22",36533284,36533286,2,-1,"  assembly comparison","H1F0|GeneID=3005"]
["chr22",36927247,36939849,4175,-1,"  mate pair","MAFF|GeneID=23764"]
["chr22",37017866,37017869,3,-1,"  assembly comparison","CSNK1E|GeneID=1454"]
["chr22",37152369,37152370,1,-1,"  assembly comparison","KCNJ4|GeneID=3761"]
["chr22",37210043,37210044,1,-1,"  assembly comparison","DDX17|GeneID=10521"]
["chr22",37210195,37210196,1,-1,"  assembly comparison","DDX17|GeneID=10521"]
["chr22",37211646,37211648,2,-1,"  assembly comparison","DDX17|GeneID=10521"]
["chr22",37455887,37466836,4260,-1,"  mate pair","GTPBP1|GeneID=9567/UNC84B|GeneID=25777"]
["chr22",37548021,37548023,2,-1,"  assembly comparison","NPTXR|GeneID=23467"]
["chr22",37744263,37744772,510,-1,"  Agilent 24M","APOBEC3C|GeneID=27350"]
["chr22",37758559,37758562,3,-1,"  assembly comparison","APOBEC3D|GeneID=140564"]
["chr22",37758733,37758737,4,-1,"  assembly comparison","APOBEC3D|GeneID=140564"]
["chr22",37759000,37759001,1,-1,"  assembly comparison","APOBEC3D|GeneID=140564"]
["chr22",37781028,37781029,1,-1,"  assembly comparison","APOBEC3F|GeneID=200316"]
["chr22",37781321,37781322,1,-1,"  assembly comparison","APOBEC3F|GeneID=200316"]
["chr22",37781372,37781374,2,-1,"  assembly comparison","APOBEC3F|GeneID=200316"]
["chr22",37826273,37826276,3,-1,"  assembly comparison","APOBEC3H|GeneID=164668"]
["chr22",37970683,37970690,7,-1,"  assembly comparison","PDGFB|GeneID=5155"]
["chr22",38323355,38327965,4266,-1,"  mate pair","CACNA1I|GeneID=8911"]
["chr22",39057619,39057620,1,-1,"  assembly comparison","TNRC6B|GeneID=23112"]
["chr22",39552045,39552047,2,-1,"  assembly comparison","ST13|GeneID=6767"]
["chr22",39905483,39905484,1,-1,"  assembly comparison","EP300|GeneID=2033"]
["chr22",39905831,39905842,12,-1,"  split read","EP300|GeneID=2033"]
["chr22",39905852,39905874,22,-1,"  assembly comparison","EP300|GeneID=2033"]
["chr22",40270370,40270377,7,-1,"  assembly comparison","POLR3H|GeneID=171568"]
["chr22",40784449,40784450,1,-1,"  assembly comparison","NAGA|GeneID=4668"]
["chr22",43637156,43637160,4,-1,"  assembly comparison","ARHGAP8|GeneID=23779/LOC553158|GeneID=553158"]
["chr22",43968824,43968828,4,-1,"  assembly comparison","C22orf9|GeneID=23313"]
["chr22",43977172,43980938,4548,-1,"  mate pair","C22orf9|GeneID=23313"]
["chr22",45017320,45017322,2,-1,"  assembly comparison","PPARA|GeneID=5465"]
["chr22",45459272,45459273,1,-1,"  assembly comparison","CERK|GeneID=64781"]
["chr22",45459663,45459664,1,-1,"  assembly comparison","CERK|GeneID=64781"]
["chr22",45459716,45459720,4,-1,"  assembly comparison","CERK|GeneID=64781"]
["chr22",48841315,48841365,51,-1,"  split read","MLC1|GeneID=23209"]
["chr22",49067761,49067762,1,-1,"  assembly comparison","PLXNB2|GeneID=23654"]
["chr22",49229629,49229630,1,-1,"  assembly comparison","SAPS2|GeneID=9701"]
["chr22",49229923,49229924,1,-1,"  assembly comparison","SAPS2|GeneID=9701"]
["chr22",49260286,49260289,3,-1,"  assembly comparison","SBF1|GeneID=6305"]
["chr22",49270652,49270653,1,-1,"  assembly comparison","ADM2|GeneID=79924"]
["chr19",691650,698510,4628,-1,"  mate pair","PALM|GeneID=5064"]
["chr19",988968,988969,1,-1,"  assembly comparison","CNN2|GeneID=1265"]
["chr19",1038006,1038007,1,-1,"  assembly comparison","POLR2E|GeneID=5434"]
["chr19",1038704,1038705,1,-1,"  assembly comparison","POLR2E|GeneID=5434"]
["chr19",1776927,1776930,3,-1,"  assembly comparison","REXO1|GeneID=57455"]
["chr19",1804987,1804988,1,-1,"  assembly comparison","KLF16|GeneID=83855"]
["chr19",1876119,1876120,1,-1,"  assembly comparison","SCAMP4|GeneID=113178"]
["chr19",1876917,1876918,1,-1,"  assembly comparison","SCAMP4|GeneID=113178"]
["chr19",1990443,1990444,1,-1,"  assembly comparison","MKNK2|GeneID=2872"]
["chr19",2225949,2225952,3,-1,"  assembly comparison","C19orf35|GeneID=374872"]
["chr19",2465981,2465983,2,-1,"  assembly comparison","GNG7|GeneID=2788"]
["chr19",2859454,2869643,3472,-1,"  mate pair","ZNF57|GeneID=126295"]
["chr19",3248033,3248035,2,-1,"  assembly comparison","BRUNOL5|GeneID=60680"]
["chr19",3582638,3582640,2,-1,"  assembly comparison","PIP5K1C|GeneID=23396"]
["chr19",3723968,3734839,5606,-1,"  mate pair","MATK|GeneID=4145"]
["chr19",3875782,3875783,1,-1,"  assembly comparison","ATCAY|GeneID=85300"]
["chr19",3923103,3932535,3558,-1,"  mate pair","EEF2|GeneID=1938"]
["chr19",4450634,4450648,15,-1,"  split read","HDGF2|GeneID=84717"]
["chr19",4450664,4450679,15,-1,"  assembly comparison","HDGF2|GeneID=84717"]
["chr19",4462539,4462737,198,-1,"  assembly comparison","KIAA1881|GeneID=729359"]
["chr19",4474104,4474105,1,-1,"  assembly comparison","LSDP5|GeneID=440503"]
["chr19",4745562,4745563,1,-1,"  assembly comparison","FEM1A|GeneID=55527"]
["chr19",4841448,4841449,1,-1,"  assembly comparison","ARRDC5|GeneID=645432"]
["chr19",5860507,5860508,1,-1,"  assembly comparison","VMAC|GeneID=400673"]
["chr19",5944781,5944785,4,-1,"  assembly comparison","RFX2|GeneID=5990"]
["chr19",5945827,5945830,3,-1,"  assembly comparison","RFX2|GeneID=5990"]
["chr19",6364153,6364154,1,-1,"  assembly comparison","KHSRP|GeneID=8570"]
["chr19",6364850,6364851,1,-1,"  assembly comparison","KHSRP|GeneID=8570"]
["chr19",6486381,6486384,3,-1,"  assembly comparison","TNFSF9|GeneID=8744"]
["chr19",7037386,7037390,4,-1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7038080,7038084,4,-1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7038166,7038171,5,-1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7038562,7038563,1,-1,"  assembly comparison","ZNF557|GeneID=79230"]
["chr19",7065082,7065083,1,-1,"  assembly comparison","INSR|GeneID=3643"]
["chr19",7067730,7067732,2,-1,"  assembly comparison","INSR|GeneID=3643"]
["chr19",7586513,7600252,4335,-1,"  mate pair","KIAA1543|GeneID=57662/XAB2|GeneID=56949"]
["chr19",7641340,7641349,9,-1,"  assembly comparison","RETN|GeneID=56729"]
["chr19",7650085,7650087,2,-1,"  assembly comparison","C19orf59|GeneID=199675"]
["chr19",7712231,7712232,1,-1,"  assembly comparison","CD209|GeneID=30835"]
["chr19",7736868,7737006,138,-1,"  assembly comparison","CLEC4M|GeneID=10332"]
["chr19",7761093,7761112,19,-1,"  assembly comparison","CLEC4GP1|GeneID=440508"]
["chr19",7929952,7929953,1,-1,"  assembly comparison","ELAVL1|GeneID=1994"]
["chr19",7932216,7932243,28,-1,"  split read","ELAVL1|GeneID=1994"]
["chr19",7932313,7932341,28,-1,"  assembly comparison","ELAVL1|GeneID=1994"]
["chr19",8241073,8273131,14675,-1,"  mate pair","CD320|GeneID=51293"]
["chr19",8295897,8295900,3,-1,"  assembly comparison","KANK3|GeneID=256949"]
["chr19",8304959,8304971,12,-1,"  assembly comparison","KANK3|GeneID=256949"]
["chr19",8551329,8551330,1,-1,"  assembly comparison","ADAMTS10|GeneID=81794"]
["chr19",9296304,9296305,1,-1,"  assembly comparison","ZNF559|GeneID=84527"]
["chr19",9446123,9448416,3222,-1,"  mate pair","ZNF560|GeneID=147741"]
["chr19",9993740,9993742,2,-1,"  assembly comparison","RDH8|GeneID=50700"]
["chr19",10147856,10154941,4358,-1,"  mate pair","DNMT1|GeneID=1786"]
["chr19",10292466,10292466,1,-1,"  assembly comparison","RAVER1|GeneID=125950"]
["chr19",10544556,10544558,2,-1,"  assembly comparison","AP1M2|GeneID=10053"]
["chr19",10624233,10624235,2,-1,"  assembly comparison","LOC147727|GeneID=147727"]
["chr19",11136813,11136815,2,-1,"  assembly comparison","KANK2|GeneID=25959"]
["chr19",11167372,11167392,20,-1,"  assembly comparison","KANK2|GeneID=25959"]
["chr19",11419366,11419372,6,-1,"  assembly comparison","PRKCSH|GeneID=5589"]
["chr19",11525441,11525447,6,-1,"  assembly comparison","ELOF1|GeneID=84337"]
["chr19",11547027,11559489,4792,-1,"  mate pair","ACP5|GeneID=54"]
["chr19",11779098,11779099,1,-1,"  assembly comparison","ZNF491|GeneID=126069"]
["chr19",12435758,12435761,3,-1,"  assembly comparison","ZNF709|GeneID=163051"]
["chr19",12552482,12560851,4490,-1,"  mate pair","ZNF490|GeneID=57474"]
["chr19",12915920,12915921,1,-1,"  assembly comparison","CALR|GeneID=811"]
["chr19",13178498,13178501,3,-1,"  assembly comparison","CACNA1A|GeneID=773"]
["chr19",14121761,14121762,1,-1,"  assembly comparison","LPHN1|GeneID=22859"]
["chr19",14467884,14467887,3,-1,"  assembly comparison","GIPC1|GeneID=10755"]
["chr19",15086434,15086435,1,-1,"  assembly comparison","SYDE1|GeneID=85360"]
["chr19",15131787,15132235,449,-1,"  Agilent 24M","NOTCH3|GeneID=4854"]
["chr19",15325756,15325758,2,-1,"  assembly comparison","AKAP8|GeneID=10270"]
["chr19",15508413,15517400,4084,-1,"  mate pair","CYP4F22|GeneID=126410"]
["chr19",15884538,15884544,6,-1,"  assembly comparison","CYP4F11|GeneID=57834"]
["chr19",15884599,15884616,17,-1,"  assembly comparison","CYP4F11|GeneID=57834"]
["chr19",16129212,16129213,1,-1,"  assembly comparison","HSH2D|GeneID=84941"]
["chr19",16851332,16851333,1,-1,"  assembly comparison","SIN3B|GeneID=23309"]
["chr19",16970357,16974019,3663,-1,"  NimbleGen 42M","CPAMD8|GeneID=27151"]
["chr19",17258478,17258500,22,-1,"  assembly comparison","ANKLE1|GeneID=126549"]
["chr19",17259616,17266443,4256,-1,"  mate pair","ABHD8|GeneID=79575"]
["chr19",17277595,17277596,1,-1,"  assembly comparison","MRPL34|GeneID=64981"]
["chr19",17295121,17295132,12,-1,"  split read","ANO8|GeneID=57719"]
["chr19",17295141,17295153,12,-1,"  assembly comparison","ANO8|GeneID=57719"]
["chr19",17396878,17396903,26,-1,"  split read","FAM125A|GeneID=93343"]
["chr19",17553736,17553737,1,-1,"  assembly comparison","GLT25D1|GeneID=79709"]
["chr19",17784555,17784556,1,-1,"  assembly comparison","B3GNT3|GeneID=10331"]
["chr19",17784714,17784715,1,-1,"  assembly comparison","B3GNT3|GeneID=10331"]
["chr19",17798326,17798330,4,-1,"  assembly comparison","JAK3|GeneID=3718"]
["chr19",18168994,18168995,1,-1,"  assembly comparison","RAB3A|GeneID=5864"]
["chr19",18414584,18414588,4,-1,"  assembly comparison","ELL|GeneID=8178"]
["chr19",18414693,18414694,1,-1,"  assembly comparison","ELL|GeneID=8178"]
["chr19",18592679,18592680,1,-1,"  assembly comparison","TMEM59L|GeneID=25789"]
["chr19",18642166,18642167,1,-1,"  assembly comparison","KLHL26|GeneID=55295"]
["chr19",19478423,19478424,1,-1,"  assembly comparison","GATAD2A|GeneID=54815"]
["chr19",19479562,19479564,2,-1,"  assembly comparison","GATAD2A|GeneID=54815"]
["chr19",19651877,19651879,2,-1,"  assembly comparison","ZNF101|GeneID=94039"]
["chr19",20598462,20598463,1,-1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20599018,20599185,167,-1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",20619946,20619948,2,-1,"  assembly comparison","ZNF626|GeneID=199777"]
["chr19",21093110,21093111,1,-1,"  assembly comparison","ZNF714|GeneID=148206"]
["chr19",21099598,21099600,2,-1,"  assembly comparison","ZNF714|GeneID=148206"]
["chr19",21382782,21382785,3,-1,"  assembly comparison","ZNF493|GeneID=284443"]
["chr19",21401597,21401598,1,-1,"  assembly comparison","ZNF493|GeneID=284443"]
["chr19",21512770,21512771,1,-1,"  assembly comparison","ZNF429|GeneID=353088"]
["chr19",21699298,21699301,3,-1,"  assembly comparison","ZNF100|GeneID=163227"]
["chr19",21700357,21700360,3,-1,"  assembly comparison","ZNF100|GeneID=163227"]
["chr19",21701191,21701196,5,-1,"  assembly comparison","ZNF100|GeneID=163227"]
["chr19",21780811,21780812,1,-1,"  assembly comparison","ZNF43|GeneID=7594"]
["chr19",21780827,21780829,2,-1,"  assembly comparison","ZNF43|GeneID=7594"]
["chr19",21943930,21943931,1,-1,"  assembly comparison","ZNF208|GeneID=7757"]
["chr19",21944386,21944388,2,-1,"  assembly comparison","ZNF208|GeneID=7757"]
["chr19",22155493,22155576,84,-1,"  split read","ZNF676|GeneID=163223"]
["chr19",22366580,22367000,420,-1,"  assembly comparison","ZNF98|GeneID=148198"]
["chr19",22640692,22640693,1,-1,"  assembly comparison","ZNF492|GeneID=57615"]
["chr19",22730824,22731407,584,-1,"  split read","ZNF99|GeneID=7652"]
["chr19",22730866,22730866,1,-1,"  assembly comparison","ZNF99|GeneID=7652"]
["chr19",22730979,22730979,1,-1,"  assembly comparison","ZNF99|GeneID=7652"]
["chr19",22731450,22731952,502,-1,"  assembly comparison","ZNF99|GeneID=7652"]
["chr19",22731952,22731953,1,-1,"  assembly comparison","ZNF99|GeneID=7652"]
["chr19",23333881,23333882,1,-1,"  assembly comparison","ZNF91|GeneID=7644"]
["chr19",23717385,23717386,1,-1,"  assembly comparison","ZNF681|GeneID=148213"]
["chr19",34882240,34882243,3,-1,"  assembly comparison","C19orf12|GeneID=83636"]
["chr19",37779856,37779860,4,-1,"  assembly comparison","ANKRD27|GeneID=84079"]
["chr19",38159798,38159799,1,-1,"  assembly comparison","C19orf40|GeneID=91442"]
["chr19",38998450,38998453,3,-1,"  assembly comparison","KCTD15|GeneID=79047"]
["chr19",39535714,39535722,8,-1,"  assembly comparison","KIAA0355|GeneID=9710"]
["chr19",40307370,40307371,1,-1,"  assembly comparison","LGI4|GeneID=163175"]
["chr19",40462515,40462519,4,-1,"  assembly comparison","USF2|GeneID=7392"]
["chr19",40490412,40502661,4290,-1,"  mate pair","MAG|GeneID=4099"]
["chr19",40694211,40694261,51,-1,"  split read","DMKN|GeneID=93099"]
["chr19",40950779,40950780,1,-1,"  assembly comparison","C19orf55|GeneID=148137"]
["chr19",41186483,41200348,4760,-1,"  mate pair","C19orf46|GeneID=163183/ALKBH6|GeneID=84964/CLIP3|GeneID=25999"]
["chr19",41218123,41218126,3,-1,"  assembly comparison","THAP8|GeneID=199745"]
["chr19",41574761,41574762,1,-1,"  assembly comparison","ZFP82|GeneID=284406"]
["chr19",41695379,41695382,3,-1,"  assembly comparison","ZNF260|GeneID=339324"]
["chr19",41726736,41726737,1,-1,"  assembly comparison","ZNF529|GeneID=57711"]
["chr19",41728802,41728806,4,-1,"  assembly comparison","ZNF529|GeneID=57711"]
["chr19",41728999,41729001,2,-1,"  assembly comparison","ZNF529|GeneID=57711"]
["chr19",42000414,42000415,1,-1,"  assembly comparison","ZNF790|GeneID=388536"]
["chr19",42001045,42001048,3,-1,"  assembly comparison","ZNF790|GeneID=388536"]
["chr19",42312458,42312460,2,-1,"  assembly comparison","ZNF420|GeneID=147923"]
["chr19",43265040,43265040,1,-1,"  assembly comparison","SIPA1L3|GeneID=23094"]
["chr19",43912570,43912571,1,-1,"  assembly comparison","ACTN4|GeneID=81"]
["chr19",44019103,44019104,1,-1,"  assembly comparison","HNRNPL|GeneID=3191"]
["chr19",44124756,44124757,1,-1,"  assembly comparison","FBXO17|GeneID=115290"]
["chr19",44607950,44607953,3,-1,"  assembly comparison","PLEKHG2|GeneID=64857"]
["chr19",44713561,44713562,1,-1,"  assembly comparison","EID2B|GeneID=126272"]
["chr19",44713663,44713664,1,-1,"  assembly comparison","EID2B|GeneID=126272"]
["chr19",45638633,45638634,1,-1,"  assembly comparison","SERTAD3|GeneID=29946"]
["chr19",45639217,45639221,4,-1,"  assembly comparison","SERTAD3|GeneID=29946"]
["chr19",45706734,45720853,4361,-1,"  mate pair","SPTBN4|GeneID=57731"]
["chr19",45731517,45731981,465,-1,"  Agilent 24M","SPTBN4|GeneID=57731"]
["chr19",45863891,45863910,19,-1,"  assembly comparison","NUMBL|GeneID=9253"]
["chr19",45865743,45865749,6,-1,"  assembly comparison","NUMBL|GeneID=9253"]
["chr19",45939197,45939199,2,-1,"  assembly comparison","C19orf54|GeneID=284325"]
["chr19",45994393,45994394,1,-1,"  assembly comparison","RAB4B|GeneID=53916"]
["chr19",46215600,46215601,1,-1,"  assembly comparison","CYP2B6|GeneID=1555"]
["chr19",46215615,46215616,1,-1,"  assembly comparison","CYP2B6|GeneID=1555"]
["chr19",46437072,46440438,3367,-1,"  Agilent 24M","AXL|GeneID=558"]
["chr19",46458068,46458074,6,-1,"  assembly comparison","AXL|GeneID=558"]
["chr19",46573285,46579389,3518,-1,"  mate pair","TMEM91|GeneID=641649"]
["chr19",47487457,47487458,1,-1,"  assembly comparison","CIC|GeneID=23152"]
["chr19",48739369,48739371,2,-1,"  assembly comparison","XRCC1|GeneID=7515"]
["chr19",48803426,48803428,2,-1,"  assembly comparison","ZNF428|GeneID=126299"]
["chr19",49163487,49163488,1,-1,"  assembly comparison","ZNF221|GeneID=7638"]
["chr19",49623260,49623261,1,-1,"  assembly comparison","ZNF229|GeneID=7772"]
["chr19",49623520,49623522,2,-1,"  assembly comparison","ZNF229|GeneID=7772"]
["chr19",49708831,49708832,1,-1,"  assembly comparison","CEACAM20|GeneID=125931"]
["chr19",49858849,49858850,1,-1,"  assembly comparison","PVR|GeneID=5817"]
["chr19",49860767,49860768,1,-1,"  assembly comparison","PVR|GeneID=5817"]
["chr19",50367652,50376708,4290,-1,"  mate pair","TRAPPC6A|GeneID=79090/BLOC1S3|GeneID=388552"]
["chr19",50498002,50498003,1,-1,"  assembly comparison","MARK4|GeneID=57787"]
["chr19",50604346,50604349,3,-1,"  assembly comparison","CD3EAP|GeneID=10849"]
["chr19",50723926,50723927,1,-1,"  assembly comparison","OPA3|GeneID=80207"]
["chr19",50965319,50965337,18,-1,"  assembly comparison","DMPK|GeneID=1760"]
["chr19",50965337,50965364,27,-1,"  assembly comparison","DMPK|GeneID=1760"]
["chr19",50978105,50978106,1,-1,"  assembly comparison","DMWD|GeneID=1762"]
["chr19",51912167,51912168,1,-1,"  assembly comparison","PRKD2|GeneID=25865"]
["chr19",51970149,51970157,8,-1,"  assembly comparison","SLC1A5|GeneID=6510"]
["chr19",51972934,51984815,4373,-1,"  mate pair","SLC1A5|GeneID=6510"]
["chr19",51983339,51983344,6,-1,"  assembly comparison","SLC1A5|GeneID=6510"]
["chr19",52199045,52199047,2,-1,"  assembly comparison","GRLF1|GeneID=2909"]
["chr19",52216002,52216004,2,-1,"  assembly comparison","NPAS1|GeneID=4861"]
["chr19",52516298,52516299,1,-1,"  assembly comparison","C5AR1|GeneID=728"]
["chr19",52577376,52577379,3,-1,"  assembly comparison","DHX34|GeneID=9704"]
["chr19",52660889,52668275,4698,-1,"  mate pair","SLC8A2|GeneID=6543"]
["chr19",52898057,52898059,2,-1,"  assembly comparison","GLTSCR1|GeneID=29998"]
["chr19",53035349,53035352,3,-1,"  assembly comparison","CRX|GeneID=1406"]
["chr19",53036935,53036936,1,-1,"  assembly comparison","CRX|GeneID=1406"]
["chr19",53403745,53403748,3,-1,"  assembly comparison","CARD8|GeneID=22900"]
["chr19",53403902,53403903,1,-1,"  assembly comparison","CARD8|GeneID=22900"]
["chr19",53404076,53404077,1,-1,"  assembly comparison","CARD8|GeneID=22900"]
["chr19",53676991,53676992,1,-1,"  assembly comparison","CYTH2|GeneID=9266"]
["chr19",54265176,54265179,3,-1,"  assembly comparison","KCNA7|GeneID=3743"]
["chr19",54309319,54312935,4154,-1,"  mate pair","LIN7B|GeneID=64130"]
["chr19",54349562,54349565,3,-1,"  assembly comparison","HRC|GeneID=3270"]
["chr19",54636542,54636543,1,-1,"  assembly comparison","SLC17A7|GeneID=57030"]
["chr19",55098024,55103283,5454,-1,"  mate pair","IL4I1|GeneID=259307/NUP62|GeneID=23636"]
["chr19",55102625,55102627,2,-1,"  assembly comparison","NUP62|GeneID=23636"]
["chr19",55817121,55817122,1,-1,"  assembly comparison","SYT3|GeneID=84258"]
["chr19",56101789,56101856,67,-1,"  assembly comparison","KLK4|GeneID=9622"]
["chr19",56147981,56147981,1,-1,"  assembly comparison","KLK5|GeneID=25818"]
["chr19",56172487,56172491,4,-1,"  assembly comparison","KLK7|GeneID=5650"]
["chr19",56207847,56207848,1,-1,"  assembly comparison","KLK10|GeneID=5655"]
["chr19",56209404,56209405,1,-1,"  assembly comparison","KLK10|GeneID=5655"]
["chr19",56292762,56292763,1,-1,"  assembly comparison","ATPBD3|GeneID=90353"]
["chr19",56940896,56940897,1,-1,"  assembly comparison","FPR1|GeneID=2357"]
["chr19",57495485,57495487,2,-1,"  assembly comparison","ZNF480|GeneID=147657"]
["chr19",58008356,58014027,5672,-1,"  NimbleGen 42M","ZNF28|GeneID=7576"]
["chr19",58013889,58050120,36446,-1,"  mate pair","ZNF28|GeneID=7576/ZNF468|GeneID=90333"]
["chr19",58073319,58073332,13,-1,"  assembly comparison","ZNF320|GeneID=162967"]
["chr19",58123432,58123433,1,-1,"  assembly comparison","ZNF321|GeneID=399669"]
["chr19",58359218,58359219,1,-1,"  assembly comparison","ZNF665|GeneID=79788"]
["chr19",58637953,58637954,1,-1,"  assembly comparison","LOC147804|GeneID=147804"]
["chr19",58644700,58644701,1,-1,"  assembly comparison","ZNF761|GeneID=388561"]
["chr19",58688506,58688510,4,-1,"  assembly comparison","ZNF813|GeneID=126017"]
["chr19",58795225,58795233,8,-1,"  assembly comparison","LOC284379|GeneID=284379"]
["chr19",58988790,58988791,1,-1,"  assembly comparison","NLRP12|GeneID=91662"]
["chr19",59069858,59069859,1,-1,"  assembly comparison","MYADM|GeneID=91663"]
["chr19",59070283,59070297,14,-1,"  assembly comparison","MYADM|GeneID=91663"]
["chr19",59071346,59071348,2,-1,"  assembly comparison","MYADM|GeneID=91663"]
["chr19",59137411,59137412,1,-1,"  assembly comparison","CACNG7|GeneID=59284"]
["chr19",59369343,59369347,4,-1,"  assembly comparison","MBOAT7|GeneID=79143"]
["chr19",59433771,59433773,3,-1,"  assembly comparison","LILRA6|GeneID=79168"]
["chr19",59469550,59469552,2,-1,"  assembly comparison","LILRB2|GeneID=10288"]
["chr19",59492450,59497392,4943,-1,"  Agilent 24M","LILRA3|GeneID=11026"]
["chr19",59510359,59510363,4,-1,"  assembly comparison","LILRA5|GeneID=353514"]
["chr19",59748317,59748390,73,-1,"  assembly comparison","KIR3DX1|GeneID=90011"]
["chr19",60592536,60592540,4,-1,"  assembly comparison","RPL28|GeneID=6158"]
["chr19",60846330,60846333,3,-1,"  assembly comparison","ZNF580|GeneID=51157"]
["chr19",61729568,61729569,1,-1,"  assembly comparison","ZNF471|GeneID=57573"]
["chr19",61758661,61758665,4,-1,"  assembly comparison","ZFP28|GeneID=140612"]
["chr19",62016394,62016395,1,-1,"  assembly comparison","PEG3|GeneID=5178"]
["chr19",62357074,62357075,1,-1,"  assembly comparison","DUXA|GeneID=503835"]
["chr19",62420985,62420986,1,-1,"  assembly comparison","ZNF264|GeneID=9422"]
["chr19",62434306,62434319,14,-1,"  split read","AURKC|GeneID=6795"]
["chr19",62532709,62532710,1,-1,"  assembly comparison","ZNF543|GeneID=125919"]
["chr19",62533459,62533460,1,-1,"  assembly comparison","ZNF543|GeneID=125919"]
["chr19",62674527,62674532,5,-1,"  assembly comparison","ZNF772|GeneID=400720"]
["chr19",62810542,62810543,1,-1,"  assembly comparison","ZNF530|GeneID=348327"]
["chr19",62983237,62983238,1,-1,"  assembly comparison","ZNF586|GeneID=54807"]
["chr19",63067329,63067331,2,-1,"  assembly comparison","ZNF587|GeneID=84914"]
["chr19",63077518,63077682,165,-1,"  split read","ZNF814|GeneID=730051"]
["chr19",63077772,63077773,1,-1,"  assembly comparison","ZNF814|GeneID=730051"]
["chr19",63466471,63466473,2,-1,"  assembly comparison","ZNF544|GeneID=27300"]
["chr19",63550044,63550045,1,-1,"  assembly comparison","A1BG|GeneID=1"]
["chr8",153306,153308,2,-1,"  assembly comparison","FLJ45055|GeneID=644128"]
["chr8",186945,186973,29,-1,"  assembly comparison","ZNF596|GeneID=169270"]
["chr8",484670,484676,6,-1,"  assembly comparison","C8orf42|GeneID=157695"]
["chr8",1759581,1759582,1,-1,"  assembly comparison","ARHGEF10|GeneID=9639"]
["chr8",1829331,1831172,4311,-1,"  mate pair","ARHGEF10|GeneID=9639"]
["chr8",1941052,1941054,2,-1,"  assembly comparison","KBTBD11|GeneID=9920"]
["chr8",2782379,2782382,3,-1,"  assembly comparison","CSMD1|GeneID=64478"]
["chr8",2782836,2782836,1,-1,"  assembly comparison","CSMD1|GeneID=64478"]
["chr8",3254416,3254417,1,-1,"  assembly comparison","CSMD1|GeneID=64478"]
["chr8",6493419,6493423,4,-1,"  assembly comparison","MCPH1|GeneID=79648"]
["chr8",6660787,6660788,1,-1,"  assembly comparison","XKR5|GeneID=389610"]
["chr8",8680673,8680674,1,-1,"  assembly comparison","MFHAS1|GeneID=9258"]
["chr8",8924956,8924959,3,-1,"  assembly comparison","ERI1|GeneID=90459"]
["chr8",9673072,9673073,1,-1,"  assembly comparison","TNKS|GeneID=8658"]
["chr8",11221179,11221182,3,-1,"  assembly comparison","MTMR9|GeneID=66036"]
["chr8",11221905,11221907,2,-1,"  assembly comparison","MTMR9|GeneID=66036"]
["chr8",11681224,11681225,1,-1,"  assembly comparison","NEIL2|GeneID=252969"]
["chr8",11737875,11737877,2,-1,"  assembly comparison","CTSB|GeneID=1508"]
["chr8",16041658,16041676,18,-1,"  assembly comparison","MSR1|GeneID=4481"]
["chr8",17131731,17131732,1,-1,"  assembly comparison","CNOT7|GeneID=29883"]
["chr8",17469335,17479613,3271,-1,"  mate pair","SLC7A2|GeneID=6542/PDGFRL|GeneID=5157"]
["chr8",17546857,17546861,4,-1,"  assembly comparison","MTUS1|GeneID=57509"]
["chr8",17930108,17930111,3,-1,"  assembly comparison","PCM1|GeneID=5108"]
["chr8",17930452,17930456,4,-1,"  assembly comparison","PCM1|GeneID=5108"]
["chr8",18498481,18505608,2852,-1,"  mate pair","PSD3|GeneID=23362"]
["chr8",19296558,19296563,5,-1,"  assembly comparison","SH2D4A|GeneID=63898"]
["chr8",20149146,20149147,1,-1,"  assembly comparison","LZTS1|GeneID=11178"]
["chr8",22000107,22005983,3946,-1,"  mate pair","FAM160B2|GeneID=64760"]
["chr8",22022647,22022648,1,-1,"  assembly comparison","NUDT18|GeneID=79873"]
["chr8",22022652,22022653,1,-1,"  assembly comparison","NUDT18|GeneID=79873"]
["chr8",22188809,22188811,2,-1,"  assembly comparison","PIWIL2|GeneID=55124"]
["chr8",22334955,22334958,3,-1,"  assembly comparison","SLC39A14|GeneID=23516"]
["chr8",22626856,22626857,1,-1,"  assembly comparison","PEBP4|GeneID=157310"]
["chr8",23159952,23159955,3,-1,"  assembly comparison","CHMP7|GeneID=91782"]
["chr8",23345962,23345963,1,-1,"  assembly comparison","ENTPD4|GeneID=9583"]
["chr8",23592517,23592520,3,-1,"  assembly comparison","NKX3-1|GeneID=4824"]
["chr8",23593606,23593610,4,-1,"  assembly comparison","NKX3-1|GeneID=4824"]
["chr8",23594167,23594171,4,-1,"  assembly comparison","NKX3-1|GeneID=4824"]
["chr8",23755961,23755963,2,-1,"  assembly comparison","STC1|GeneID=6781"]
["chr8",24267944,24267948,4,-1,"  assembly comparison","ADAM28|GeneID=10863"]
["chr8",24866987,24866988,1,-1,"  assembly comparison","NEFL|GeneID=4747"]
["chr8",25325511,25325512,1,-1,"  assembly comparison","DOCK5|GeneID=80005"]
["chr8",26491449,26491451,2,-1,"  assembly comparison","DPYSL2|GeneID=1808"]
["chr8",26569230,26569231,1,-1,"  assembly comparison","DPYSL2|GeneID=1808"]
["chr8",27450251,27450254,3,-1,"  assembly comparison","EPHX2|GeneID=2053"]
["chr8",27585094,27585096,2,-1,"  assembly comparison","SCARA3|GeneID=51435"]
["chr8",27783670,27783671,1,-1,"  assembly comparison","SCARA5|GeneID=286133"]
["chr8",27936523,27936524,1,-1,"  assembly comparison","C8orf80|GeneID=389643"]
["chr8",28629626,28635244,2576,-1,"  mate pair","EXTL3|GeneID=2137"]
["chr8",28965353,28965354,1,-1,"  assembly comparison","HMBOX1|GeneID=79618"]
["chr8",29261891,29261893,2,-1,"  assembly comparison","DUSP4|GeneID=1846"]
["chr8",33476104,33476105,1,-1,"  assembly comparison","MAK16|GeneID=84549/C8orf41|GeneID=80185"]
["chr8",38825862,38825864,2,-1,"  assembly comparison","TACC1|GeneID=6867"]
["chr8",38827473,38827475,2,-1,"  assembly comparison","TACC1|GeneID=6867"]
["chr8",38946343,38946344,1,-1,"  assembly comparison","PLEKHA2|GeneID=59339"]
["chr8",39351157,39505456,154300,-1,"  Agilent 24M","ADAM5P|GeneID=255926/ADAM3A|GeneID=1587"]
["chr8",39351475,39361885,10411,-1,"  NimbleGen 42M","ADAM5P|GeneID=255926"]
["chr8",39992646,39992647,1,-1,"  assembly comparison","IDO2|GeneID=169355"]
["chr8",40130939,40130940,1,-1,"  assembly comparison","C8orf4|GeneID=56892"]
["chr8",41520378,41520379,1,-1,"  assembly comparison","GINS4|GeneID=84296"]
["chr8",41521438,41521439,1,-1,"  assembly comparison","GINS4|GeneID=84296"]
["chr8",41631827,41631829,2,-1,"  assembly comparison","ANK1|GeneID=286"]
["chr8",41906865,41906870,5,-1,"  assembly comparison","MYST3|GeneID=7994"]
["chr8",42997718,42997722,4,-1,"  assembly comparison","HOOK3|GeneID=84376"]
["chr8",49052397,49052398,1,-1,"  assembly comparison","MCM4|GeneID=4173"]
["chr8",52893522,52893523,1,-1,"  assembly comparison","PCMTD1|GeneID=115294"]
["chr8",52894707,52894717,11,-1,"  split read","PCMTD1|GeneID=115294"]
["chr8",56814603,56814605,2,-1,"  assembly comparison","TMEM68|GeneID=137695"]
["chr8",57237484,57237485,1,-1,"  assembly comparison","PLAG1|GeneID=5324"]
["chr8",57516380,57516381,1,-1,"  assembly comparison","PENK|GeneID=5179"]
["chr8",57521120,57521121,1,-1,"  assembly comparison","PENK|GeneID=5179"]
["chr8",59223264,59223265,1,-1,"  assembly comparison","FAM110B|GeneID=90362"]
["chr8",59523286,59523287,1,-1,"  assembly comparison","UBXN2B|GeneID=137886"]
["chr8",59564958,59572583,2848,-1,"  mate pair","CYP7A1|GeneID=1581"]
["chr8",62574604,62574607,3,-1,"  assembly comparison","RLBP1L1|GeneID=157807"]
["chr8",62700758,62700759,1,-1,"  assembly comparison","ASPH|GeneID=444"]
["chr8",67687374,67687847,474,-1,"  Agilent 24M","MYBL1|GeneID=4603"]
["chr8",69306282,69306284,2,-1,"  assembly comparison","PREX2|GeneID=80243"]
["chr8",75310302,75310303,1,-1,"  assembly comparison","JPH1|GeneID=56704"]
["chr8",75441888,75441889,1,-1,"  assembly comparison","GDAP1|GeneID=54332"]
["chr8",77939403,77939404,1,-1,"  assembly comparison","ZFHX4|GeneID=79776"]
["chr8",79794030,79794031,1,-1,"  assembly comparison","FAM164A|GeneID=51101"]
["chr8",79807751,79807752,1,-1,"  assembly comparison","IL7|GeneID=3574"]
["chr8",82516351,82516355,4,-1,"  assembly comparison","PMP2|GeneID=5375"]
["chr8",85258032,85258033,1,-1,"  assembly comparison","RALYL|GeneID=138046"]
["chr8",86245150,86245154,4,-1,"  assembly comparison","LRRCC1|GeneID=85444"]
["chr8",86382417,86382418,1,-1,"  assembly comparison","CA13|GeneID=377677"]
["chr8",86547711,86547712,1,-1,"  assembly comparison","CA3|GeneID=761"]
["chr8",87235102,87235107,5,-1,"  assembly comparison","ATP6V0D2|GeneID=245972"]
["chr8",87656237,87656239,2,-1,"  assembly comparison","CNGB3|GeneID=54714"]
["chr8",88952343,88952345,2,-1,"  assembly comparison","WDR21C|GeneID=138009"]
["chr8",88953845,88953847,2,-1,"  assembly comparison","WDR21C|GeneID=138009"]
["chr8",88953860,88953861,1,-1,"  assembly comparison","WDR21C|GeneID=138009"]
["chr8",92038387,92038389,2,-1,"  assembly comparison","NECAB1|GeneID=64168"]
["chr8",92076585,92076586,1,-1,"  assembly comparison","TMEM55A|GeneID=55529"]
["chr8",93040359,93040360,1,-1,"  assembly comparison","RUNX1T1|GeneID=862"]
["chr8",93040871,93040899,28,-1,"  assembly comparison","RUNX1T1|GeneID=862"]
["chr8",94813397,94813401,4,-1,"  assembly comparison","RBM12B|GeneID=389677"]
["chr8",96009652,96009653,1,-1,"  assembly comparison","TP53INP1|GeneID=94241"]
["chr8",97311309,97311311,2,-1,"  assembly comparison","UQCRB|GeneID=7381"]
["chr8",100957317,100957320,3,-1,"  assembly comparison","VPS13B|GeneID=157680"]
["chr8",100957503,100957506,3,-1,"  assembly comparison","VPS13B|GeneID=157680"]
["chr8",100957772,100957775,3,-1,"  assembly comparison","VPS13B|GeneID=157680"]
["chr8",101613852,101613853,1,-1,"  assembly comparison","ANKRD46|GeneID=157567"]
["chr8",102286994,102287010,17,-1,"  split read","ZNF706|GeneID=51123"]
["chr8",103730541,103730547,6,-1,"  assembly comparison","KLF10|GeneID=7071"]
["chr8",104413117,104413118,1,-1,"  assembly comparison","FZD6|GeneID=8323"]
["chr8",104481651,104481652,1,-1,"  assembly comparison","SLC25A32|GeneID=81034"]
["chr8",105333263,105333265,2,-1,"  assembly comparison","RIMS2|GeneID=9699"]
["chr8",105571627,105571628,1,-1,"  assembly comparison","LRP12|GeneID=29967"]
["chr8",107833631,107833633,2,-1,"  assembly comparison","OXR1|GeneID=55074"]
["chr8",108980840,108980841,1,-1,"  assembly comparison","RSPO2|GeneID=340419"]
["chr8",110324201,110324202,1,-1,"  assembly comparison","NUDCD1|GeneID=84955"]
["chr8",110611877,110611878,1,-1,"  assembly comparison","PKHD1L1|GeneID=93035"]
["chr8",110724574,110724578,4,-1,"  assembly comparison","GOLSYN|GeneID=55638"]
["chr8",117854473,117854483,10,-1,"  assembly comparison","UTP23|GeneID=84294"]
["chr8",120289959,120289960,1,-1,"  assembly comparison","MAL2|GeneID=114569"]
["chr8",121502870,121511270,2670,-1,"  mate pair","MRPL13|GeneID=28998"]
["chr8",122722579,122722581,2,-1,"  assembly comparison","HAS2|GeneID=3037"]
["chr8",122722674,122722675,1,-1,"  assembly comparison","HAS2|GeneID=3037/HAS2AS|GeneID=594842"]
["chr8",125393709,125393727,18,-1,"  assembly comparison","TMEM65|GeneID=157378"]
["chr8",125393966,125393972,6,-1,"  assembly comparison","TMEM65|GeneID=157378"]
["chr8",126088873,126088874,1,-1,"  assembly comparison","SQLE|GeneID=6713"]
["chr8",126510979,126511788,810,-1,"  Agilent 24M","TRIB1|GeneID=10221"]
["chr8",126519485,126519490,5,-1,"  assembly comparison","TRIB1|GeneID=10221"]
["chr8",128558115,128566817,7994,-1,"  mate pair","LOC727677|GeneID=727677"]
["chr8",133930173,133930176,4,-1,"  assembly comparison","PHF20L1|GeneID=51105"]
["chr8",134537455,134537456,1,-1,"  assembly comparison","ST3GAL1|GeneID=6482"]
["chr8",134540325,134540326,1,-1,"  assembly comparison","ST3GAL1|GeneID=6482"]
["chr8",141594907,141594908,1,-1,"  assembly comparison","CHRAC1|GeneID=54108"]
["chr8",141595444,141595445,1,-1,"  assembly comparison","CHRAC1|GeneID=54108"]
["chr8",143740884,143740885,1,-1,"  assembly comparison","JRK|GeneID=8629"]
["chr8",143741427,143741431,4,-1,"  assembly comparison","JRK|GeneID=8629"]
["chr8",143743095,143743097,2,-1,"  assembly comparison","JRK|GeneID=8629"]
["chr8",143775774,143784730,3798,-1,"  mate pair","LY6K|GeneID=54742"]
["chr8",143913270,143913271,1,-1,"  assembly comparison","GML|GeneID=2765"]
["chr8",143956174,143994207,38034,-1,"  split read","CYP11B1|GeneID=1584/CYP11B2|GeneID=1585"]
["chr8",145066608,145066609,1,-1,"  assembly comparison","PLEC1|GeneID=5339"]
["chr8",145178930,145178932,2,-1,"  assembly comparison","OPLAH|GeneID=26873"]
["chr8",145231698,145231699,1,-1,"  assembly comparison","MAF1|GeneID=84232"]
["chr8",145232981,145232982,1,-1,"  assembly comparison","MAF1|GeneID=84232"]
["chr8",145361425,145464290,69846,-1,"  mate pair","HEATR7A|GeneID=727957/SCXA|GeneID=100129885/SCXB|GeneID=642658/BOP1|GeneID=23246"]
["chr8",145709576,145709577,1,-1,"  assembly comparison","RECQL4|GeneID=9401"]
["chr8",146076268,146076271,3,-1,"  assembly comparison","ZNF250|GeneID=58500"]
["chr8",146172055,146172056,1,-1,"  assembly comparison","ZNF252|GeneID=286101"]
["chrY",5668176,5668178,2,-1,"  assembly comparison","PCDH11Y|GeneID=83259"]
["chrY",5668197,5668200,4,-1,"  assembly comparison","PCDH11Y|GeneID=83259"]
["chr1",5799,5804,6,-1,"  assembly comparison","WASH5P|GeneID=653635"]
["chr1",6622,6622,1,-1,"  assembly comparison","WASH5P|GeneID=653635"]
["chr1",778884,778933,49,-1,"  assembly comparison","LOC643837|GeneID=643837"]
["chr1",1326000,1326002,2,-1,"  assembly comparison","LOC148413|GeneID=148413"]
["chr1",1499899,1499901,2,-1,"  assembly comparison","SSU72|GeneID=29101"]
["chr1",3324255,3329826,5405,-1,"  mate pair","PRDM16|GeneID=63976"]
["chr1",3342634,3342635,1,-1,"  assembly comparison","PRDM16|GeneID=63976"]
["chr1",3535055,3535074,19,-1,"  assembly comparison","TPRG1L|GeneID=127262"]
["chr1",3536126,3536130,4,-1,"  assembly comparison","TPRG1L|GeneID=127262"]
["chr1",3556485,3556493,8,-1,"  assembly comparison","WDR8|GeneID=49856"]
["chr1",3641983,3645230,4382,-1,"  mate pair","KIAA0495|GeneID=57212"]
["chr1",4743143,4743144,1,-1,"  assembly comparison","AJAP1|GeneID=55966"]
["chr1",4743389,4743405,16,-1,"  assembly comparison","AJAP1|GeneID=55966"]
["chr1",4743441,4743443,2,-1,"  assembly comparison","AJAP1|GeneID=55966"]
["chr1",6085407,6085408,1,-1,"  assembly comparison","CHD5|GeneID=450091"]
["chr1",6087266,6087266,1,-1,"  assembly comparison","CHD5|GeneID=450091"]
["chr1",6574042,6574043,1,-1,"  assembly comparison","KLHL21|GeneID=9903"]
["chr1",6606162,6606163,1,-1,"  assembly comparison","PHF13|GeneID=148479"]
["chr1",7069978,7082370,4312,-1,"  mate pair","CAMTA1|GeneID=23261"]
["chr1",7750777,7750778,1,-1,"  assembly comparison","CAMTA1|GeneID=23261"]
["chr1",7750875,7750876,1,-1,"  assembly comparison","CAMTA1|GeneID=23261"]
["chr1",7751650,7751651,1,-1,"  assembly comparison","CAMTA1|GeneID=23261"]
["chr1",7812574,7812627,54,-1,"  split read","PER3|GeneID=8863"]
["chr1",7902951,7902952,1,-1,"  assembly comparison","TNFRSF9|GeneID=3604"]
["chr1",7994407,7994409,2,-1,"  assembly comparison","ERRFI1|GeneID=54206"]
["chr1",9249487,9249488,1,-1,"  assembly comparison","H6PD|GeneID=9563"]
["chr1",10163734,10163735,1,-1,"  assembly comparison","UBE4B|GeneID=10277"]
["chr1",10398782,10401173,3321,-1,"  mate pair","PGD|GeneID=5226"]
["chr1",10443189,10443191,2,-1,"  assembly comparison","DFFA|GeneID=1676"]
["chr1",10443569,10443570,1,-1,"  assembly comparison","DFFA|GeneID=1676"]
["chr1",11520031,11520032,1,-1,"  assembly comparison","PTCHD2|GeneID=57540"]
["chr1",11644420,11644422,2,-1,"  assembly comparison","FBXO44|GeneID=93611"]
["chr1",11645614,11645618,4,-1,"  assembly comparison","FBXO44|GeneID=93611"]
["chr1",11718769,11718774,5,-1,"  assembly comparison","AGTRAP|GeneID=57085"]
["chr1",11788986,11788987,1,-1,"  assembly comparison","CLCN6|GeneID=1185"]
["chr1",12190558,12190559,1,-1,"  assembly comparison","TNFRSF1B|GeneID=7133"]
["chr1",12600132,12600133,1,-1,"  assembly comparison","DHRS3|GeneID=9249"]
["chr1",13815477,13815478,1,-1,"  assembly comparison","PDPN|GeneID=10630"]
["chr1",13816254,13816255,1,-1,"  assembly comparison","PDPN|GeneID=10630"]
["chr1",13816884,13816886,3,-1,"  assembly comparison","PDPN|GeneID=10630"]
["chr1",13978981,13978984,3,-1,"  assembly comparison","PRDM2|GeneID=7799"]
["chr1",15351851,15351851,1,-1,"  assembly comparison","TMEM51|GeneID=55092"]
["chr1",15772320,15772321,1,-1,"  assembly comparison","AGMAT|GeneID=79814"]
["chr1",15772350,15772351,1,-1,"  assembly comparison","AGMAT|GeneID=79814"]
["chr1",16205735,16205739,4,-1,"  assembly comparison","C1orf64|GeneID=149563"]
["chr1",16213436,16213437,1,-1,"  assembly comparison","HSPB7|GeneID=27129"]
["chr1",16234677,16257931,23255,-1,"  split read","CLCNKB|GeneID=1188/FAM131C|GeneID=348487"]
["chr1",16691677,16691678,1,-1,"  assembly comparison","CROCCL2|GeneID=114819"]
["chr1",17063449,17134834,71386,-1,"  Affymetrix 6.0","CROCC|GeneID=9696"]
["chr1",17266284,17266285,1,-1,"  assembly comparison","PADI2|GeneID=11240"]
["chr1",17266336,17266338,2,-1,"  assembly comparison","PADI2|GeneID=11240"]
["chr1",17591260,17591261,1,-1,"  assembly comparison","PADI6|GeneID=353238"]
["chr1",17605860,17605863,3,-1,"  assembly comparison","RCC2|GeneID=55920"]
["chr1",19104799,19104801,2,-1,"  assembly comparison","IFFO2|GeneID=126917"]
["chr1",20303656,20315565,3343,-1,"  mate pair","PLA2G2D|GeneID=26279"]
["chr1",20788178,20788179,1,-1,"  assembly comparison","CDA|GeneID=978"]
["chr1",20850443,20850445,3,-1,"  assembly comparison","PINK1|GeneID=65018"]
["chr1",20850906,20850918,12,-1,"  assembly comparison","DDOST|GeneID=1650"]
["chr1",21446403,21458931,3940,-1,"  mate pair","ECE1|GeneID=1889"]
["chr1",21795480,21795481,1,-1,"  assembly comparison","RAP1GAP|GeneID=5909"]
["chr1",21807902,21817453,3442,-1,"  mate pair","RAP1GAP|GeneID=5909"]
["chr1",22063120,22084921,9822,-1,"  mate pair","HSPG2|GeneID=3339"]
["chr1",22230129,22230130,1,-1,"  assembly comparison","HSPC157|GeneID=29092"]
["chr1",22290873,22290873,1,-1,"  assembly comparison","CDC42|GeneID=998"]
["chr1",22318305,22318309,4,-1,"  assembly comparison","WNT4|GeneID=54361"]
["chr1",22846968,22846985,17,-1,"  assembly comparison","C1QC|GeneID=714"]
["chr1",22847135,22847136,1,-1,"  assembly comparison","C1QC|GeneID=714"]
["chr1",23543388,23543389,1,-1,"  assembly comparison","HNRNPR|GeneID=10236"]
["chr1",24354293,24354295,2,-1,"  assembly comparison","IL28RA|GeneID=163702"]
["chr1",24556133,24556135,2,-1,"  assembly comparison","C1orf201|GeneID=90529"]
["chr1",24671101,24671103,2,-1,"  assembly comparison","NPAL3|GeneID=57185"]
["chr1",25528315,25528316,1,-1,"  assembly comparison","RHD|GeneID=6007"]
["chr1",26017031,26017032,1,-1,"  assembly comparison","SEPN1|GeneID=57190"]
["chr1",26021617,26021622,5,-1,"  assembly comparison","LOC646471|GeneID=646471"]
["chr1",26021943,26021945,2,-1,"  assembly comparison","LOC646471|GeneID=646471"]
["chr1",26033710,26033712,2,-1,"  assembly comparison","C1orf135|GeneID=79000"]
["chr1",26159900,26159901,1,-1,"  assembly comparison","PAFAH2|GeneID=5051"]
["chr1",26321922,26321924,2,-1,"  assembly comparison","PDIK1L|GeneID=149420"]
["chr1",26481423,26481446,24,-1,"  split read","UBXN11|GeneID=91544"]
["chr1",26481459,26481483,24,-1,"  assembly comparison","UBXN11|GeneID=91544"]
["chr1",26980237,26980239,2,-1,"  assembly comparison","ARID1A|GeneID=8289"]
["chr1",27565654,27579596,4243,-1,"  mate pair","MAP3K6|GeneID=9064/FCN3|GeneID=8547/CD164L2|GeneID=388611"]
["chr1",27960367,27960368,1,-1,"  assembly comparison","FAM76A|GeneID=199870"]
["chr1",28085620,28085621,1,-1,"  assembly comparison","C1orf38|GeneID=9473"]
["chr1",28093132,28093133,1,-1,"  assembly comparison","RPA2|GeneID=6118"]
["chr1",28469991,28480057,4402,-1,"  mate pair","SESN2|GeneID=83667"]
["chr1",29318926,29318927,1,-1,"  assembly comparison","EPB41|GeneID=2035/TMEM200B|GeneID=399474"]
["chr1",30958145,30958146,1,-1,"  assembly comparison","MATN1|GeneID=4146"]
["chr1",31114960,31114961,1,-1,"  assembly comparison","SDC3|GeneID=9672"]
["chr1",31114987,31114988,1,-1,"  assembly comparison","SDC3|GeneID=9672"]
["chr1",31505204,31505205,1,-1,"  assembly comparison","SNRNP40|GeneID=9410"]
["chr1",31615089,31622196,3955,-1,"  mate pair","FABP3|GeneID=2170"]
["chr1",32921194,32921195,1,-1,"  assembly comparison","RBBP4|GeneID=5928"]
["chr1",32921471,32921473,2,-1,"  assembly comparison","RBBP4|GeneID=5928"]
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["chr1",229419227,229419228,1,-1,"  assembly comparison","TRIM67|GeneID=440730"]
["chr1",229537891,229537892,1,-1,"  assembly comparison","EXOC8|GeneID=149371"]
["chr1",230017346,230017349,3,-1,"  assembly comparison","DISC2|GeneID=27184"]
["chr1",230018107,230018108,1,-1,"  assembly comparison","DISC2|GeneID=27184"]
["chr1",230240342,230240346,4,-1,"  assembly comparison","DISC1|GeneID=27185"]
["chr1",235130341,235130343,2,-1,"  assembly comparison","MTR|GeneID=4548"]
["chr1",236063285,236063286,1,-1,"  assembly comparison","RYR2|GeneID=6262"]
["chr1",238322205,238322208,3,-1,"  assembly comparison","FMN2|GeneID=56776"]
["chr1",238437556,238437589,33,-1,"  assembly comparison","FMN2|GeneID=56776"]
["chr1",239822699,239822700,1,-1,"  assembly comparison","KMO|GeneID=8564"]
["chr1",240119653,240119654,1,-1,"  assembly comparison","EXO1|GeneID=9156"]
["chr1",243080399,243080400,1,-1,"  assembly comparison","HNRNPU|GeneID=3192"]
["chr1",244647314,244647315,1,-1,"  assembly comparison","SMYD3|GeneID=64754"]
["chr1",245762253,245762254,1,-1,"  assembly comparison","OR2C3|GeneID=81472"]
["chr1",246045166,246045169,3,-1,"  assembly comparison","OR14A16|GeneID=284532"]
["chr1",246108130,246108134,4,-1,"  assembly comparison","TRIM58|GeneID=25893"]
["chr1",246592261,246592262,1,-1,"  assembly comparison","OR2T4|GeneID=127074"]
["chr1",247086709,247086710,1,-1,"  assembly comparison","SH3BP5L|GeneID=80851"]
["chr6",202353,326149,123797,-1,"  Affymetrix 6.0","DUSP22|GeneID=56940"]
["chr6",356004,356005,1,-1,"  assembly comparison","IRF4|GeneID=3662"]
["chr6",1340811,1340812,1,-1,"  assembly comparison","FOXF2|GeneID=2295"]
["chr6",2576895,2581635,3586,-1,"  mate pair","C6orf195|GeneID=154386"]
["chr6",3169831,3169832,1,-1,"  assembly comparison","TUBB2B|GeneID=347733"]
["chr6",3668144,3668145,1,-1,"  assembly comparison","C6orf145|GeneID=221749"]
["chr6",4032840,4032842,2,-1,"  assembly comparison","C6orf201|GeneID=404220"]
["chr6",5952203,5952204,1,-1,"  assembly comparison","NRN1|GeneID=51299"]
["chr6",7194295,7194305,14,-1,"  split read","RREB1|GeneID=6239"]
["chr6",7194322,7194336,14,-1,"  assembly comparison","RREB1|GeneID=6239"]
["chr6",7556129,7556130,1,-1,"  assembly comparison","SNRNP48|GeneID=154007"]
["chr6",7827157,7827161,4,-1,"  assembly comparison","TXNDC5|GeneID=81567"]
["chr6",10871781,10871782,1,-1,"  assembly comparison","MAK|GeneID=4117"]
["chr6",11245048,11245049,1,-1,"  assembly comparison","LOC221710|GeneID=221710"]
["chr6",11245644,11245645,1,-1,"  assembly comparison","LOC221710|GeneID=221710"]
["chr6",11822211,11822212,1,-1,"  assembly comparison","C6orf105|GeneID=84830"]
["chr6",12398717,12398718,1,-1,"  assembly comparison","EDN1|GeneID=1906"]
["chr6",14086784,14086787,3,-1,"  assembly comparison","RNF182|GeneID=221687"]
["chr6",17665388,17665389,1,-1,"  assembly comparison","CAP2|GeneID=10486"]
["chr6",19947826,19947827,1,-1,"  assembly comparison","ID4|GeneID=3400"]
["chr6",21339523,21339524,1,-1,"  assembly comparison","CDKAL1|GeneID=54901"]
["chr6",21705750,21705751,1,-1,"  assembly comparison","SOX4|GeneID=6659"]
["chr6",24255561,24255562,1,-1,"  assembly comparison","NRSN1|GeneID=140767"]
["chr6",24581304,24581306,2,-1,"  assembly comparison","GPLD1|GeneID=2822"]
["chr6",24754047,24754065,18,-1,"  assembly comparison","KIAA0319|GeneID=9856"]
["chr6",25387831,25387832,1,-1,"  assembly comparison","LRRC16A|GeneID=55604"]
["chr6",25953411,25953412,1,-1,"  assembly comparison","SLC17A3|GeneID=10786"]
["chr6",26342584,26342587,3,-1,"  assembly comparison","HIST1H1D|GeneID=3007"]
["chr6",26634798,26634799,1,-1,"  assembly comparison","HCG11|GeneID=493812"]
["chr6",26743170,26743171,1,-1,"  assembly comparison","ZNF322A|GeneID=79692"]
["chr6",27095747,27095748,1,-1,"  assembly comparison","LOC100270746|GeneID=100270746"]
["chr6",27331043,27331058,15,-1,"  assembly comparison","PRSS16|GeneID=10279"]
["chr6",27331948,27331952,4,-1,"  assembly comparison","PRSS16|GeneID=10279"]
["chr6",28170421,28170422,1,-1,"  assembly comparison","ZSCAN12L1|GeneID=221584"]
["chr6",28170618,28170619,1,-1,"  assembly comparison","ZSCAN12L1|GeneID=221584"]
["chr6",28291221,28291230,9,-1,"  assembly comparison","LOC222699|GeneID=222699"]
["chr6",28509365,28509366,1,-1,"  assembly comparison","ZSCAN23|GeneID=222696"]
["chr6",29975934,29975935,1,-1,"  assembly comparison","HCG2P7|GeneID=80867"]
["chr6",29975981,29975982,1,-1,"  assembly comparison","HCG2P7|GeneID=80867"]
["chr6",29976775,29976777,2,-1,"  assembly comparison","HCG2P7|GeneID=80867"]
["chr6",29978313,29978323,10,-1,"  assembly comparison","HCG2P7|GeneID=80867"]
["chr6",31432465,31435724,3260,-1,"  NimbleGen 42M","HLA-B|GeneID=3106"]
["chr6",31714880,31714884,4,-1,"  assembly comparison","BAT3|GeneID=7917"]
["chr6",31728076,31728080,4,-1,"  assembly comparison","BAT3|GeneID=7917"]
["chr6",31728113,31728114,1,-1,"  assembly comparison","BAT3|GeneID=7917"]
["chr6",31911043,31911044,1,-1,"  assembly comparison","SNORD48|GeneID=26801"]
["chr6",32633700,32633701,1,-1,"  assembly comparison","HLA-DRB6|GeneID=3128"]
["chr6",32635627,32635629,2,-1,"  assembly comparison","HLA-DRB6|GeneID=3128"]
["chr6",33081454,33081455,1,-1,"  assembly comparison","HLA-DOA|GeneID=3111"]
["chr6",33081966,33081967,1,-1,"  assembly comparison","HLA-DOA|GeneID=3111"]
["chr6",33662780,33662782,2,-1,"  assembly comparison","FLJ43752|GeneID=401253"]
["chr6",33771966,33771967,1,-1,"  assembly comparison","ITPR3|GeneID=3710"]
["chr6",34656859,34665058,4324,-1,"  mate pair","C6orf106|GeneID=64771"]
["chr6",35217019,35217027,8,-1,"  assembly comparison","TCP11|GeneID=6954"]
["chr6",35326482,35326487,5,-1,"  assembly comparison","SCUBE3|GeneID=222663"]
["chr6",35899178,35899180,2,-1,"  assembly comparison","LHFPL5|GeneID=222662"]
["chr6",36865230,36876813,5234,-1,"  mate pair","CPNE5|GeneID=57699"]
["chr6",36931480,36931481,1,-1,"  assembly comparison","PPIL1|GeneID=51645"]
["chr6",37050277,37059045,4401,-1,"  mate pair","MTCH1|GeneID=23787"]
["chr6",37061897,37061898,1,-1,"  assembly comparison","MTCH1|GeneID=23787"]
["chr6",37246028,37246031,3,-1,"  assembly comparison","PIM1|GeneID=5292"]
["chr6",38247338,38247358,20,-1,"  assembly comparison","BTBD9|GeneID=114781"]
["chr6",38247613,38247627,14,-1,"  assembly comparison","BTBD9|GeneID=114781"]
["chr6",41258038,41266530,5042,-1,"  mate pair","TREML2|GeneID=79865"]
["chr6",41266568,41266579,12,-1,"  split read","TREML2|GeneID=79865"]
["chr6",42017510,42017512,2,-1,"  assembly comparison","CCND3|GeneID=896"]
["chr6",42773541,42773542,1,-1,"  assembly comparison","PRPH2|GeneID=5961"]
["chr6",42943801,42943803,2,-1,"  assembly comparison","KIAA0240|GeneID=23506"]
["chr6",43039610,43039614,4,-1,"  assembly comparison","PEX6|GeneID=5190"]
["chr6",43129965,43129966,1,-1,"  assembly comparison","MRPL2|GeneID=51069"]
["chr6",44374984,44374985,1,-1,"  assembly comparison","AARS2|GeneID=57505"]
["chr6",45623627,45623628,1,-1,"  assembly comparison","RUNX2|GeneID=860"]
["chr6",45625731,45625732,1,-1,"  assembly comparison","RUNX2|GeneID=860"]
["chr6",46219516,46219518,2,-1,"  assembly comparison","ENPP4|GeneID=22875"]
["chr6",46753737,46753761,24,-1,"  assembly comparison","SLC25A27|GeneID=9481"]
["chr6",46780165,46780183,18,-1,"  assembly comparison","PLA2G7|GeneID=7941"]
["chr6",47700288,47700289,1,-1,"  assembly comparison","CD2AP|GeneID=23607"]
["chr6",47797570,47797571,1,-1,"  assembly comparison","GPR115|GeneID=221393"]
["chr6",49568743,49568744,1,-1,"  assembly comparison","CENPQ|GeneID=55166"]
["chr6",50789628,50789629,1,-1,"  assembly comparison","TFAP2D|GeneID=83741"]
["chr6",50921860,50921861,1,-1,"  assembly comparison","TFAP2B|GeneID=7021"]
["chr6",52380451,52380455,4,-1,"  assembly comparison","PAQR8|GeneID=85315"]
["chr6",52466142,52466143,1,-1,"  assembly comparison","EFHC1|GeneID=114327"]
["chr6",52473284,52473287,3,-1,"  assembly comparison","TRAM2|GeneID=9697"]
["chr6",52475204,52475205,1,-1,"  assembly comparison","TRAM2|GeneID=9697"]
["chr6",52639813,52639814,1,-1,"  assembly comparison","LOC730101|GeneID=730101"]
["chr6",52641161,52641162,1,-1,"  assembly comparison","LOC730101|GeneID=730101"]
["chr6",53070730,53070732,2,-1,"  assembly comparison","FBXO9|GeneID=26268"]
["chr6",53470771,53470772,1,-1,"  assembly comparison","GCLC|GeneID=2729"]
["chr6",53471451,53471455,4,-1,"  assembly comparison","GCLC|GeneID=2729"]
["chr6",55374855,55374856,1,-1,"  assembly comparison","GFRAL|GeneID=389400"]
["chr6",55375194,55375195,1,-1,"  assembly comparison","GFRAL|GeneID=389400"]
["chr6",55407679,55407680,1,-1,"  assembly comparison","HMGCLL1|GeneID=54511"]
["chr6",56588011,56588013,2,-1,"  assembly comparison","DST|GeneID=667"]
["chr6",56866250,56875779,3898,-1,"  mate pair","DST|GeneID=667"]
["chr6",64045525,64045526,1,-1,"  assembly comparison","LGSN|GeneID=51557"]
["chr6",70485578,70499367,4042,-1,"  mate pair","LMBRD1|GeneID=55788"]
["chr6",72068302,72068305,3,-1,"  assembly comparison","OGFRL1|GeneID=79627"]
["chr6",74029500,74029514,15,-1,"  split read","KHDC1|GeneID=80759"]
["chr6",76445304,76445304,1,-1,"  assembly comparison","SENP6|GeneID=26054"]
["chr6",76484543,76484545,2,-1,"  assembly comparison","SENP6|GeneID=26054"]
["chr6",76684330,76684331,1,-1,"  assembly comparison","MYO6|GeneID=4646"]
["chr6",80468056,80468057,1,-1,"  assembly comparison","SH3BGRL2|GeneID=83699"]
["chr6",81110381,81110382,1,-1,"  assembly comparison","BCKDHB|GeneID=594"]
["chr6",81110449,81110452,3,-1,"  assembly comparison","BCKDHB|GeneID=594"]
["chr6",81110798,81110800,2,-1,"  assembly comparison","BCKDHB|GeneID=594"]
["chr6",84856249,84856249,1,-1,"  assembly comparison","MRAP2|GeneID=112609"]
["chr6",87848943,87857346,2536,-1,"  mate pair","CGA|GeneID=1081"]
["chr6",88050290,88050291,1,-1,"  assembly comparison","GJB7|GeneID=375519"]
["chr6",88275510,88275511,1,-1,"  assembly comparison","SLC35A1|GeneID=10559"]
["chr6",88441432,88441433,1,-1,"  assembly comparison","AKIRIN2|GeneID=55122"]
["chr6",89377957,89377977,20,-1,"  assembly comparison","RNGTT|GeneID=8732"]
["chr6",89847282,89847286,4,-1,"  assembly comparison","PNRC1|GeneID=10957"]
["chr6",89983883,89983884,1,-1,"  assembly comparison","GABRR1|GeneID=2569"]
["chr6",90021988,90030667,4082,-1,"  mate pair","GABRR2|GeneID=2570"]
["chr6",90093639,90093640,1,-1,"  assembly comparison","UBE2J1|GeneID=51465"]
["chr6",90132981,90132982,1,-1,"  assembly comparison","RRAGD|GeneID=58528"]
["chr6",90561105,90571228,4376,-1,"  mate pair","MDN1|GeneID=23195"]
["chr6",90695305,90695306,1,-1,"  assembly comparison","BACH2|GeneID=60468"]
["chr6",90695538,90695542,4,-1,"  assembly comparison","BACH2|GeneID=60468"]
["chr6",90698396,90698398,2,-1,"  assembly comparison","BACH2|GeneID=60468"]
["chr6",94474298,94474299,1,-1,"  assembly comparison","TSG1|GeneID=643432"]
["chr6",96762816,96762817,1,-1,"  assembly comparison","FUT9|GeneID=10690"]
["chr6",96766214,96766215,1,-1,"  assembly comparison","FUT9|GeneID=10690"]
["chr6",97479431,97479433,2,-1,"  assembly comparison","KLHL32|GeneID=114792"]
["chr6",97694832,97694834,2,-1,"  assembly comparison","KLHL32|GeneID=114792"]
["chr6",97698724,97698725,1,-1,"  assembly comparison","C6orf167|GeneID=253714"]
["chr6",99390940,99390941,1,-1,"  assembly comparison","POU3F2|GeneID=5454"]
["chr6",99392289,99392290,1,-1,"  assembly comparison","POU3F2|GeneID=5454"]
["chr6",99830757,99830758,1,-1,"  assembly comparison","C6orf168|GeneID=84553"]
["chr6",99988822,99988828,6,-1,"  assembly comparison","USP45|GeneID=85015"]
["chr6",101412730,101412735,5,-1,"  assembly comparison","ASCC3|GeneID=10973"]
["chr6",105712585,105712589,4,-1,"  assembly comparison","POPDC3|GeneID=64208"]
["chr6",107220985,107220987,2,-1,"  assembly comparison","QRSL1|GeneID=55278"]
["chr6",107222532,107222533,1,-1,"  assembly comparison","QRSL1|GeneID=55278"]
["chr6",107612504,107623864,3450,-1,"  mate pair","PDSS2|GeneID=57107"]
["chr6",108296132,108296133,1,-1,"  assembly comparison","SEC63|GeneID=11231"]
["chr6",108296493,108296497,4,-1,"  assembly comparison","SEC63|GeneID=11231"]
["chr6",109956893,109956895,2,-1,"  assembly comparison","FLJ42177|GeneID=401271"]
["chr6",110013034,110013037,3,-1,"  assembly comparison","C6orf199|GeneID=221264"]
["chr6",111041121,111041123,2,-1,"  assembly comparison","CDC2L6|GeneID=23097"]
["chr6",111727304,111727307,3,-1,"  assembly comparison","REV3L|GeneID=5980"]
["chr6",114289483,114289484,1,-1,"  assembly comparison","MARCKS|GeneID=4082"]
["chr6",114364250,114364253,3,-1,"  assembly comparison","HDAC2|GeneID=3066"]
["chr6",116944533,116944561,28,-1,"  assembly comparison","FAM26E|GeneID=254228"]
["chr6",118743312,118743313,1,-1,"  assembly comparison","SLC35F1|GeneID=222553"]
["chr6",118929686,118929688,2,-1,"  assembly comparison","BRD7P3|GeneID=23629"]
["chr6",123146835,123146836,1,-1,"  assembly comparison","FABP7|GeneID=2173"]
["chr6",125186242,125186244,2,-1,"  assembly comparison","NKAIN2|GeneID=154215"]
["chr6",128332392,128332393,1,-1,"  assembly comparison","PTPRK|GeneID=5796"]
["chr6",129879377,129879380,3,-1,"  assembly comparison","LAMA2|GeneID=3908"]
["chr6",132254597,132254600,3,-1,"  assembly comparison","ENPP1|GeneID=5167"]
["chr6",132256809,132256812,3,-1,"  assembly comparison","ENPP1|GeneID=5167"]
["chr6",132311494,132311496,2,-1,"  assembly comparison","CTGF|GeneID=1490"]
["chr6",133891941,133891942,1,-1,"  assembly comparison","EYA4|GeneID=2070"]
["chr6",134350478,134350480,2,-1,"  assembly comparison","SLC2A12|GeneID=154091"]
["chr6",135323939,135323940,1,-1,"  assembly comparison","HBS1L|GeneID=10767"]
["chr6",135326749,135326751,2,-1,"  assembly comparison","HBS1L|GeneID=10767"]
["chr6",136621250,136621256,6,-1,"  assembly comparison","BCLAF1|GeneID=9774"]
["chr6",136639339,136640694,1356,-1,"  split read","BCLAF1|GeneID=9774"]
["chr6",139541345,139541346,1,-1,"  assembly comparison","HECA|GeneID=51696"]
["chr6",139541439,139541440,1,-1,"  assembly comparison","HECA|GeneID=51696"]
["chr6",144189985,144189989,4,-1,"  assembly comparison","PHACTR2|GeneID=9749"]
["chr6",144190023,144190029,6,-1,"  assembly comparison","PHACTR2|GeneID=9749"]
["chr6",145998073,145998074,1,-1,"  assembly comparison","EPM2A|GeneID=7957"]
["chr6",148911910,148911911,1,-1,"  assembly comparison","SASH1|GeneID=23328"]
["chr6",150761526,150761527,1,-1,"  assembly comparison","IYD|GeneID=389434"]
["chr6",150766783,150766784,1,-1,"  assembly comparison","IYD|GeneID=389434"]
["chr6",151720557,151720558,1,-1,"  assembly comparison","AKAP12|GeneID=9590"]
["chr6",151727229,151727230,1,-1,"  assembly comparison","ZBTB2|GeneID=57621"]
["chr6",151981853,151981857,4,-1,"  assembly comparison","C6orf97|GeneID=80129"]
["chr6",151983640,151983641,1,-1,"  assembly comparison","C6orf97|GeneID=80129"]
["chr6",152463878,152463879,1,-1,"  assembly comparison","ESR1|GeneID=2099"]
["chr6",153352048,153352049,1,-1,"  assembly comparison","MTRF1L|GeneID=54516"]
["chr6",154768714,154768718,4,-1,"  assembly comparison","CNKSR3|GeneID=154043"]
["chr6",155620035,155620037,2,-1,"  assembly comparison","TIAM2|GeneID=26230"]
["chr6",155620409,155620413,4,-1,"  assembly comparison","TIAM2|GeneID=26230"]
["chr6",158849923,158849925,2,-1,"  assembly comparison","TULP4|GeneID=56995"]
["chr6",158975183,158975187,4,-1,"  assembly comparison","TMEM181|GeneID=57583"]
["chr6",159106945,159106949,4,-1,"  assembly comparison","EZR|GeneID=7430"]
["chr6",159107342,159107343,1,-1,"  assembly comparison","EZR|GeneID=7430"]
["chr6",159107868,159107870,2,-1,"  assembly comparison","EZR|GeneID=7430"]
["chr6",159580770,159580787,18,-1,"  split read","FNDC1|GeneID=84624"]
["chr6",159580793,159580811,18,-1,"  assembly comparison","FNDC1|GeneID=84624"]
["chr6",160131638,160131641,3,-1,"  assembly comparison","MRPL18|GeneID=29074"]
["chr6",160413658,160419699,6250,-1,"  mate pair","IGF2R|GeneID=3482"]
["chr6",161439370,161439373,3,-1,"  assembly comparison","MAP3K4|GeneID=4216"]
["chr6",161476032,161476036,4,-1,"  assembly comparison","AGPAT4|GeneID=56895"]
["chr6",166744590,166744591,1,-1,"  assembly comparison","RPS6KA2|GeneID=6196"]
["chr6",168119773,168119773,1,-1,"  assembly comparison","HGC6.3|GeneID=100128124"]
["chr6",168119795,168119921,126,-1,"  assembly comparison","HGC6.3|GeneID=100128124"]
["chr6",168119962,168120004,42,-1,"  assembly comparison","HGC6.3|GeneID=100128124"]
["chr6",169358437,169358441,4,-1,"  assembly comparison","THBS2|GeneID=7058"]
["chr6",169358624,169358625,1,-1,"  assembly comparison","THBS2|GeneID=7058"]
["chr6",169923797,169933972,4761,-1,"  mate pair","C6orf122|GeneID=401288/C6orf208|GeneID=80069"]
["chr6",170712991,170713000,9,-1,"  assembly comparison","TBP|GeneID=6908"]
["chr11",480793,480801,8,-1,"  assembly comparison","PTDSS2|GeneID=81490"]
["chr11",480805,480811,6,-1,"  assembly comparison","PTDSS2|GeneID=81490"]
["chr11",492145,492160,15,-1,"  assembly comparison","RNH1|GeneID=6050"]
["chr11",777835,777836,1,-1,"  assembly comparison","CEND1|GeneID=51286"]
["chr11",814991,814995,4,-1,"  assembly comparison","PNPLA2|GeneID=57104"]
["chr11",815000,815001,1,-1,"  assembly comparison","PNPLA2|GeneID=57104"]
["chr11",822987,822990,3,-1,"  assembly comparison","CD151|GeneID=977"]
["chr11",1068932,1069915,811,-1,"  mate pair","MUC2|GeneID=4583"]
["chr11",1082692,1082761,69,-1,"  assembly comparison","MUC2|GeneID=4583"]
["chr11",1221601,1223272,1671,-1,"  assembly comparison","MUC5B|GeneID=727897/MUC5AC|GeneID=4586"]
["chr11",1268503,1278209,3660,-1,"  mate pair","TOLLIP|GeneID=54472"]
["chr11",1439693,1439695,2,-1,"  assembly comparison","BRSK2|GeneID=9024"]
["chr11",1585541,1585627,87,-1,"  split read","KRTAP5-3|GeneID=387266"]
["chr11",1599800,1599821,21,-1,"  assembly comparison","KRTAP5-4|GeneID=387267"]
["chr11",1599842,1599863,21,-1,"  assembly comparison","KRTAP5-4|GeneID=387267"]
["chr11",1608065,1608095,30,-1,"  assembly comparison","KRTAP5-5|GeneID=439915"]
["chr11",1608220,1608250,30,-1,"  assembly comparison","KRTAP5-5|GeneID=439915"]
["chr11",1862375,1864216,1842,-1,"  Agilent 24M","LSP1|GeneID=4046"]
["chr11",2109379,2109381,2,-1,"  assembly comparison","IGF2|GeneID=3481/INS-IGF2|GeneID=723961"]
["chr11",2109420,2109422,2,-1,"  assembly comparison","IGF2|GeneID=3481/INS-IGF2|GeneID=723961"]
["chr11",2109603,2109607,4,-1,"  assembly comparison","IGF2|GeneID=3481/INS-IGF2|GeneID=723961"]
["chr11",2384916,2384946,30,-1,"  assembly comparison","TRPM5|GeneID=29850"]
["chr11",2626808,2626810,2,-1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2636385,2636388,3,-1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2648902,2648914,13,-1,"  split read","KCNQ1OT1|GeneID=10984"]
["chr11",2649034,2653591,4768,-1,"  mate pair","KCNQ1OT1|GeneID=10984"]
["chr11",2649475,2649476,1,-1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2660936,2660937,1,-1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",2676251,2676252,1,-1,"  assembly comparison","KCNQ1OT1|GeneID=10984"]
["chr11",3690009,3690011,2,-1,"  assembly comparison","NUP98|GeneID=4928"]
["chr11",4116355,4116356,1,-1,"  assembly comparison","RRM1|GeneID=6240"]
["chr11",5432007,5432009,2,-1,"  assembly comparison","OR51I2|GeneID=390064"]
["chr11",5590228,5590229,1,-1,"  assembly comparison","TRIM6|GeneID=117854"]
["chr11",5714814,5721655,3020,-1,"  mate pair","OR56B1|GeneID=387748"]
["chr11",6368511,6368528,18,-1,"  assembly comparison","SMPD1|GeneID=6609"]
["chr11",6454417,6454418,1,-1,"  assembly comparison","ARFIP2|GeneID=23647"]
["chr11",6575373,6590228,5232,-1,"  mate pair","KIAA0409|GeneID=23378/ILK|GeneID=3611/TAF10|GeneID=6881"]
["chr11",6690957,6690958,1,-1,"  assembly comparison","GVIN1|GeneID=387751"]
["chr11",6904228,6904247,19,-1,"  assembly comparison","ZNF215|GeneID=7762"]
["chr11",6977375,6977376,1,-1,"  assembly comparison","ZNF214|GeneID=7761"]
["chr11",7673491,7673807,316,-1,"  assembly comparison","OVCH2|GeneID=341277"]
["chr11",8081040,8081041,1,-1,"  assembly comparison","TUB|GeneID=7275"]
["chr11",8084817,8084818,1,-1,"  assembly comparison","RIC3|GeneID=79608"]
["chr11",8665528,8665529,1,-1,"  assembly comparison","RPL27A|GeneID=6157"]
["chr11",8666075,8666077,2,-1,"  assembly comparison","RPL27A|GeneID=6157"]
["chr11",8925458,8925465,7,-1,"  assembly comparison","TMEM9B|GeneID=56674"]
["chr11",8960968,8960969,1,-1,"  assembly comparison","NRIP3|GeneID=56675"]
["chr11",9273539,9283063,3300,-1,"  mate pair","TMEM41B|GeneID=440026"]
["chr11",9423518,9423519,1,-1,"  assembly comparison","IPO7|GeneID=10527"]
["chr11",9567778,9567782,4,-1,"  assembly comparison","WEE1|GeneID=7465"]
["chr11",9728084,9728085,1,-1,"  assembly comparison","SWAP70|GeneID=23075"]
["chr11",10491810,10491811,1,-1,"  assembly comparison","RNF141|GeneID=50862"]
["chr11",11329896,11329898,2,-1,"  assembly comparison","CSNK2A1P|GeneID=283106"]
["chr11",13707451,13707454,3,-1,"  assembly comparison","FAR1|GeneID=84188"]
["chr11",13710259,13710260,1,-1,"  assembly comparison","FAR1|GeneID=84188"]
["chr11",17353014,17353021,7,-1,"  assembly comparison","DKFZp686O24166|GeneID=374383"]
["chr11",17366727,17366728,1,-1,"  assembly comparison","KCNJ11|GeneID=3767"]
["chr11",18433994,18434009,16,-1,"  split read","LDHAL6A|GeneID=160287"]
["chr11",18434046,18434062,16,-1,"  assembly comparison","LDHAL6A|GeneID=160287"]
["chr11",18585838,18585839,1,-1,"  assembly comparison","SPTY2D1|GeneID=144108"]
["chr11",18594078,18594081,3,-1,"  assembly comparison","SPTY2D1|GeneID=144108"]
["chr11",18898435,18921174,22740,-1,"  NimbleGen 42M","MRGPRX1|GeneID=259249"]
["chr11",19202615,19202619,4,-1,"  assembly comparison","E2F8|GeneID=79733"]
["chr11",20097201,20097203,2,-1,"  assembly comparison","NAV2|GeneID=89797"]
["chr11",20487392,20487394,2,-1,"  assembly comparison","PRMT3|GeneID=10196"]
["chr11",22257998,22258000,2,-1,"  assembly comparison","ANO5|GeneID=203859"]
["chr11",22259648,22259649,1,-1,"  assembly comparison","ANO5|GeneID=203859"]
["chr11",22259780,22259784,4,-1,"  assembly comparison","ANO5|GeneID=203859"]
["chr11",26649185,26649187,2,-1,"  assembly comparison","SLC5A12|GeneID=159963"]
["chr11",27635593,27635594,1,-1,"  assembly comparison","BDNF|GeneID=627"]
["chr11",27699995,27699996,1,-1,"  assembly comparison","BDNF|GeneID=627"]
["chr11",30388574,30388575,1,-1,"  assembly comparison","MPPED2|GeneID=744"]
["chr11",32832027,32832030,3,-1,"  assembly comparison","PRRG4|GeneID=79056"]
["chr11",34457823,34457824,1,-1,"  assembly comparison","ELF5|GeneID=2001"]
["chr11",35234735,35234736,1,-1,"  assembly comparison","SLC1A2|GeneID=6506"]
["chr11",35410374,35410375,1,-1,"  assembly comparison","DKFZP586H2123|GeneID=25891"]
["chr11",36442360,36442367,7,-1,"  assembly comparison","FLJ14213|GeneID=79899"]
["chr11",45627588,45627589,1,-1,"  assembly comparison","CHST1|GeneID=8534"]
["chr11",45910274,45910279,5,-1,"  assembly comparison","PHF21A|GeneID=51317"]
["chr11",46650889,46650891,2,-1,"  assembly comparison","KIAA0652|GeneID=9776"]
["chr11",46656084,46656085,1,-1,"  assembly comparison","ARHGAP1|GeneID=392"]
["chr11",46721870,46721875,5,-1,"  assembly comparison","CKAP5|GeneID=9793"]
["chr11",47745245,47745251,6,-1,"  assembly comparison","FNBP4|GeneID=23360"]
["chr11",48146704,48146710,6,-1,"  assembly comparison","PTPRJ|GeneID=5795"]
["chr11",48330322,48330323,1,-1,"  assembly comparison","OR4C45|GeneID=403257"]
["chr11",54841341,54953054,111714,-1,"  split read","OR4A16|GeneID=81327/OR4A15|GeneID=81328"]
["chr11",57052532,57052540,8,-1,"  assembly comparison","TIMM10|GeneID=26519"]
["chr11",57164870,57175927,4586,-1,"  mate pair","YPEL4|GeneID=219539"]
["chr11",58677933,58677935,2,-1,"  assembly comparison","FAM111A|GeneID=63901"]
["chr11",59921928,59921930,2,-1,"  assembly comparison","MS4A14|GeneID=84689"]
["chr11",60324855,60324860,5,-1,"  assembly comparison","MS4A10|GeneID=341116"]
["chr11",60651381,60651384,4,-1,"  assembly comparison","CD5|GeneID=921"]
["chr11",60723113,60763911,23519,-1,"  mate pair","PGA3|GeneID=643834/PGA4|GeneID=643847"]
["chr11",60871598,60871608,10,-1,"  assembly comparison","DAK|GeneID=26007"]
["chr11",61201816,61213788,5391,-1,"  mate pair","DAGLA|GeneID=747"]
["chr11",61916626,61916633,7,-1,"  assembly comparison","ASRGL1|GeneID=80150"]
["chr11",62835681,62835682,1,-1,"  assembly comparison","SLC22A10|GeneID=387775"]
["chr11",63642653,63642654,1,-1,"  assembly comparison","FLRT1|GeneID=23769"]
["chr11",63749110,63758931,3246,-1,"  mate pair","TRPT1|GeneID=83707/NUDT22|GeneID=84304/DNAJC4|GeneID=3338/VEGFB|GeneID=7423"]
["chr11",64377207,64377208,1,-1,"  assembly comparison","EHD1|GeneID=10938"]
["chr11",64565262,64565263,1,-1,"  assembly comparison","SAC3D1|GeneID=29901"]
["chr11",64608030,64608031,1,-1,"  assembly comparison","CDCA5|GeneID=113130"]
["chr11",64900138,64900139,1,-1,"  assembly comparison","SLC25A45|GeneID=283130"]
["chr11",65026676,65026677,1,-1,"  assembly comparison","MALAT1|GeneID=378938"]
["chr11",65392743,65402610,3262,-1,"  mate pair","EFEMP2|GeneID=30008"]
["chr11",65550453,65550454,1,-1,"  assembly comparison","CATSPER1|GeneID=117144"]
["chr11",65791862,65791863,1,-1,"  assembly comparison","KLC2|GeneID=64837"]
["chr11",65819707,65819708,1,-1,"  assembly comparison","TMEM151A|GeneID=256472"]
["chr11",66920403,66921230,828,-1,"  Agilent 24M","RAD9A|GeneID=5883"]
["chr11",67552736,67552739,3,-1,"  assembly comparison","ALDH3B1|GeneID=221"]
["chr11",68613308,68613314,6,-1,"  assembly comparison","TPCN2|GeneID=219931"]
["chr11",68613967,68613968,1,-1,"  assembly comparison","TPCN2|GeneID=219931"]
["chr11",68614241,68614275,34,-1,"  assembly comparison","TPCN2|GeneID=219931"]
["chr11",69959007,69959008,1,-1,"  assembly comparison","CTTN|GeneID=2017"]
["chr11",69959030,69959032,2,-1,"  assembly comparison","CTTN|GeneID=2017"]
["chr11",70955299,70955303,4,-1,"  assembly comparison","KRTAP5-10|GeneID=387273"]
["chr11",71385919,71385921,2,-1,"  assembly comparison","RNF121|GeneID=55298"]
["chr11",71786975,71794454,4860,-1,"  mate pair","CLPB|GeneID=81570"]
["chr11",74031355,74031356,1,-1,"  assembly comparison","POLD3|GeneID=10714"]
["chr11",74961453,74961454,1,-1,"  assembly comparison","SERPINH1|GeneID=871"]
["chr11",76411569,76411584,15,-1,"  assembly comparison","ACER3|GeneID=55331"]
["chr11",76429190,76429191,1,-1,"  assembly comparison","B3GNT6|GeneID=192134"]
["chr11",76429232,76429233,1,-1,"  assembly comparison","B3GNT6|GeneID=192134"]
["chr11",76429251,76429252,1,-1,"  assembly comparison","B3GNT6|GeneID=192134"]
["chr11",76605529,76605532,3,-1,"  assembly comparison","GDPD4|GeneID=220032"]
["chr11",77457473,77457476,3,-1,"  assembly comparison","NDUFC2|GeneID=4718"]
["chr11",77457494,77457495,1,-1,"  assembly comparison","NDUFC2|GeneID=4718"]
["chr11",82637022,82637026,4,-1,"  assembly comparison","ANKRD42|GeneID=338699"]
["chr11",86197595,86197599,4,-1,"  assembly comparison","PRSS23|GeneID=11098"]
["chr11",86198604,86198606,2,-1,"  assembly comparison","PRSS23|GeneID=11098"]
["chr11",86335922,86335926,4,-1,"  assembly comparison","FZD4|GeneID=8322"]
["chr11",86335933,86335935,2,-1,"  assembly comparison","FZD4|GeneID=8322"]
["chr11",87697905,87697908,3,-1,"  assembly comparison","CTSC|GeneID=1075"]
["chr11",88698738,88698740,2,-1,"  assembly comparison","NOX4|GeneID=50507"]
["chr11",92265239,92265240,1,-1,"  assembly comparison","FAT3|GeneID=120114"]
["chr11",92851563,92851567,4,-1,"  assembly comparison","C11orf75|GeneID=56935"]
["chr11",93134527,93134529,2,-1,"  assembly comparison","C11orf54|GeneID=28970"]
["chr11",93501585,93512560,3334,-1,"  mate pair","PANX1|GeneID=24145"]
["chr11",101374036,101374037,1,-1,"  assembly comparison","KIAA1377|GeneID=57562"]
["chr11",101375447,101375448,1,-1,"  assembly comparison","KIAA1377|GeneID=57562"]
["chr11",101772377,101772378,1,-1,"  assembly comparison","TMEM123|GeneID=114908"]
["chr11",101774608,101774609,1,-1,"  assembly comparison","TMEM123|GeneID=114908"]
["chr11",104986825,104986826,1,-1,"  assembly comparison","GRIA4|GeneID=2893"]
["chr11",107041949,107041953,4,-1,"  assembly comparison","ELMOD1|GeneID=55531"]
["chr11",107482490,107482491,1,-1,"  assembly comparison","CUL5|GeneID=8065"]
["chr11",108798078,108798096,18,-1,"  assembly comparison","C11orf87|GeneID=399947"]
["chr11",109545306,109545312,6,-1,"  assembly comparison","ZC3H12C|GeneID=85463"]
["chr11",109545312,109545316,4,-1,"  assembly comparison","ZC3H12C|GeneID=85463"]
["chr11",109953418,109953419,1,-1,"  assembly comparison","ARHGAP20|GeneID=57569"]
["chr11",110936871,110936874,3,-1,"  assembly comparison","LAYN|GeneID=143903"]
["chr11",111247355,111247356,1,-1,"  assembly comparison","ALG9|GeneID=79796"]
["chr11",111250528,111250530,2,-1,"  assembly comparison","FDXACB1|GeneID=91893"]
["chr11",111353572,111353573,1,-1,"  assembly comparison","DIXDC1|GeneID=85458"]
["chr11",111459132,111459133,1,-1,"  assembly comparison","C11orf57|GeneID=55216"]
["chr11",112337549,112337550,1,-1,"  assembly comparison","NCAM1|GeneID=4684"]
["chr11",113174018,113174023,5,-1,"  assembly comparison","USP28|GeneID=57646"]
["chr11",114551319,114551320,1,-1,"  assembly comparison","CADM1|GeneID=23705"]
["chr11",116220561,116220562,1,-1,"  assembly comparison","KIAA0999|GeneID=23387"]
["chr11",117213990,117213992,2,-1,"  assembly comparison","FXYD6|GeneID=53826"]
["chr11",117278025,117278027,2,-1,"  assembly comparison","TMPRSS13|GeneID=84000"]
["chr11",117278027,117278029,2,-1,"  assembly comparison","TMPRSS13|GeneID=84000"]
["chr11",117294531,117294545,15,-1,"  split read","TMPRSS13|GeneID=84000"]
["chr11",117294551,117294566,15,-1,"  assembly comparison","TMPRSS13|GeneID=84000"]
["chr11",117494647,117494648,1,-1,"  assembly comparison","TMPRSS4|GeneID=56649"]
["chr11",117539640,117539644,4,-1,"  assembly comparison","SCN2B|GeneID=6327"]
["chr11",117541411,117541413,2,-1,"  assembly comparison","SCN2B|GeneID=6327"]
["chr11",117720302,117720306,4,-1,"  assembly comparison","CD3G|GeneID=917"]
["chr11",117976998,117977001,3,-1,"  assembly comparison","ARCN1|GeneID=372"]
["chr11",118125926,118125927,1,-1,"  assembly comparison","DDX6|GeneID=1656"]
["chr11",118403646,118403647,1,-1,"  assembly comparison","SLC37A4|GeneID=2542"]
["chr11",118420970,118420971,1,-1,"  assembly comparison","HYOU1|GeneID=10525"]
["chr11",118685595,118685598,3,-1,"  assembly comparison","MCAM|GeneID=4162"]
["chr11",119863053,119863055,2,-1,"  assembly comparison","ARHGEF12|GeneID=23365"]
["chr11",120686392,120686393,1,-1,"  assembly comparison","SC5DL|GeneID=6309"]
["chr11",122188161,122188167,6,-1,"  assembly comparison","UBASH3B|GeneID=84959"]
["chr11",124295810,124295815,5,-1,"  assembly comparison","HEPACAM|GeneID=220296"]
["chr11",124959359,124959362,3,-1,"  assembly comparison","EI24|GeneID=9538"]
["chr11",124959362,124959367,5,-1,"  assembly comparison","EI24|GeneID=9538"]
["chr11",125123938,125123940,2,-1,"  assembly comparison","PATE1|GeneID=160065"]
["chr11",125124487,125124490,3,-1,"  assembly comparison","PATE1|GeneID=160065"]
["chr11",125151943,125151944,1,-1,"  assembly comparison","PATE2|GeneID=399967"]
["chr11",125268780,125268781,1,-1,"  assembly comparison","PUS3|GeneID=83480"]
["chr11",127835195,127835201,6,-1,"  assembly comparison","ETS1|GeneID=2113"]
["chr11",128069096,128069098,2,-1,"  assembly comparison","FLI1|GeneID=2313"]
["chr11",128187926,128188619,694,-1,"  split read","FLI1|GeneID=2313"]
["chr11",128266535,128266543,8,-1,"  assembly comparison","KCNJ5|GeneID=3762"]
["chr11",128292731,128292741,10,-1,"  assembly comparison","KCNJ5|GeneID=3762"]
["chr11",128343029,128343030,1,-1,"  assembly comparison","RICS|GeneID=9743"]
["chr11",130251711,130251715,4,-1,"  assembly comparison","SNX19|GeneID=399979"]
["chr11",130745610,130745614,4,-1,"  assembly comparison","NTM|GeneID=50863"]
["chr11",131790278,131790279,1,-1,"  assembly comparison","OPCML|GeneID=4978"]
["chr11",133275205,133275206,1,-1,"  assembly comparison","LOC283174|GeneID=283174"]
["chr11",133751055,133751265,210,-1,"  assembly comparison","GLB1L2|GeneID=89944"]
["chr17",130151,139783,2774,-1,"  mate pair","RPH3AL|GeneID=9501"]
["chr17",263967,264027,60,-1,"  assembly comparison","C17orf97|GeneID=400566"]
["chr17",291078,291079,1,-1,"  assembly comparison","FAM101B|GeneID=359845"]
["chr17",291079,291080,1,-1,"  assembly comparison","FAM101B|GeneID=359845"]
["chr17",292551,292551,1,-1,"  assembly comparison","FAM101B|GeneID=359845"]
["chr17",363655,363701,46,-1,"  assembly comparison","VPS53|GeneID=55275"]
["chr17",365793,365794,1,-1,"  assembly comparison","VPS53|GeneID=55275"]
["chr17",365964,365965,1,-1,"  assembly comparison","VPS53|GeneID=55275"]
["chr17",368756,368758,2,-1,"  assembly comparison","VPS53|GeneID=55275"]
["chr17",603160,603250,91,-1,"  split read","ELP2P|GeneID=100131454"]
["chr17",604874,604875,1,-1,"  assembly comparison","ELP2P|GeneID=100131454"]
["chr17",663921,673602,3946,-1,"  mate pair","NXN|GeneID=64359"]
["chr17",855650,855652,2,-1,"  assembly comparison","ABR|GeneID=29"]
["chr17",1150493,1150495,2,-1,"  assembly comparison","TUSC5|GeneID=286753"]
["chr17",1416640,1424931,5042,-1,"  mate pair","SLC43A2|GeneID=124935"]
["chr17",1484434,1484435,1,-1,"  assembly comparison","SCARF1|GeneID=8578"]
["chr17",1561562,1561566,4,-1,"  assembly comparison","C17orf91|GeneID=84981"]
["chr17",1604738,1604739,1,-1,"  assembly comparison","SERPINF2|GeneID=5345"]
["chr17",2158093,2158093,1,-1,"  assembly comparison","LOC440396|GeneID=440396"]
["chr17",2172732,2172733,1,-1,"  assembly comparison","TSR1|GeneID=55720"]
["chr17",2268241,2268243,2,-1,"  assembly comparison","METT10D|GeneID=79066"]
["chr17",3459365,3459369,4,-1,"  assembly comparison","TRPV1|GeneID=7442"]
["chr17",3468032,3477377,4470,-1,"  mate pair","SHPK|GeneID=23729"]
["chr17",3511587,3511589,2,-1,"  assembly comparison","CTNS|GeneID=1497"]
["chr17",3512354,3512355,1,-1,"  assembly comparison","CTNS|GeneID=1497"]
["chr17",3541029,3541030,1,-1,"  assembly comparison","P2RX5|GeneID=5026"]
["chr17",3608019,3618976,4477,-1,"  mate pair","ITGAE|GeneID=3682"]
["chr17",3724679,3731142,3976,-1,"  mate pair","CAMKK1|GeneID=84254"]
["chr17",3993572,3993573,1,-1,"  assembly comparison","CYB5D2|GeneID=124936"]
["chr17",3993694,3993696,2,-1,"  assembly comparison","CYB5D2|GeneID=124936"]
["chr17",4013435,4013436,1,-1,"  assembly comparison","ANKFY1|GeneID=51479"]
["chr17",4122310,4122314,4,-1,"  assembly comparison","UBE2G1|GeneID=7326"]
["chr17",4388514,4388518,4,-1,"  assembly comparison","SPNS2|GeneID=124976"]
["chr17",4427480,4440698,5819,-1,"  mate pair","SMTNL2|GeneID=342527"]
["chr17",4635935,4635936,1,-1,"  assembly comparison","VMO1|GeneID=284013"]
["chr17",4937210,4937212,2,-1,"  assembly comparison","ZFP3|GeneID=124961"]
["chr17",4937639,4937640,1,-1,"  assembly comparison","ZFP3|GeneID=124961"]
["chr17",5227610,5227635,25,-1,"  assembly comparison","RABEP1|GeneID=9135"]
["chr17",6269366,6269368,2,-1,"  assembly comparison","AIPL1|GeneID=23746"]
["chr17",6295828,6295829,1,-1,"  assembly comparison","PITPNM3|GeneID=83394"]
["chr17",6297065,6297067,2,-1,"  assembly comparison","PITPNM3|GeneID=83394"]
["chr17",6297083,6297087,4,-1,"  assembly comparison","PITPNM3|GeneID=83394"]
["chr17",6849950,6850450,501,-1,"  NimbleGen 42M","ALOX12|GeneID=239"]
["chr17",7131186,7131187,1,-1,"  assembly comparison","SLC2A4|GeneID=6517"]
["chr17",7235643,7249068,4719,-1,"  mate pair","PLSCR3|GeneID=57048/C17orf61|GeneID=254863"]
["chr17",7301338,7301339,1,-1,"  assembly comparison","CHRNB1|GeneID=1140"]
["chr17",7304164,7304165,1,-1,"  assembly comparison","ZBTB4|GeneID=57659"]
["chr17",7411011,7411012,1,-1,"  assembly comparison","SENP3|GeneID=26168"]
["chr17",7415883,7415888,6,-1,"  assembly comparison","SENP3|GeneID=26168"]
["chr17",7415926,7415927,2,-1,"  assembly comparison","SENP3|GeneID=26168"]
["chr17",7415931,7415959,28,-1,"  assembly comparison","SENP3|GeneID=26168"]
["chr17",7426068,7426069,1,-1,"  assembly comparison","CD68|GeneID=968"]
["chr17",7435887,7435888,1,-1,"  assembly comparison","FXR2|GeneID=9513"]
["chr17",7500876,7500878,2,-1,"  assembly comparison","ATP1B2|GeneID=482"]
["chr17",7519451,7519454,3,-1,"  assembly comparison","TP53|GeneID=7157"]
["chr17",7704885,7704886,1,-1,"  assembly comparison","CYB5D1|GeneID=124637"]
["chr17",7776580,7776586,6,-1,"  assembly comparison","CNTROB|GeneID=116840"]
["chr17",8165367,8165368,1,-1,"  assembly comparison","ARHGEF15|GeneID=22899"]
["chr17",8180455,8188957,3313,-1,"  mate pair","ODF4|GeneID=146852"]
["chr17",13445969,13445970,1,-1,"  assembly comparison","HS3ST3A1|GeneID=9955"]
["chr17",15281054,15281055,1,-1,"  assembly comparison","CDRT4|GeneID=284040"]
["chr17",15346777,15346801,24,-1,"  assembly comparison","FAM18B2|GeneID=201158"]
["chr17",15821583,15821584,1,-1,"  assembly comparison","ZSWIM7|GeneID=125150"]
["chr17",16285960,16285961,1,-1,"  assembly comparison","C17orf45|GeneID=125144"]
["chr17",16980318,16980321,3,-1,"  assembly comparison","MPRIP|GeneID=23164"]
["chr17",17077658,17088610,5053,-1,"  mate pair","FLCN|GeneID=201163"]
["chr17",17621644,17621645,1,-1,"  assembly comparison","SMCR5|GeneID=140771"]
["chr17",18052546,18052553,7,-1,"  assembly comparison","ALKBH5|GeneID=54890"]
["chr17",18168493,18174600,3915,-1,"  mate pair","SMCR8|GeneID=140775/SHMT1|GeneID=6470"]
["chr17",18649728,18649730,2,-1,"  assembly comparison","FAM18B|GeneID=51030"]
["chr17",18815410,18815413,3,-1,"  assembly comparison","FAM83G|GeneID=644815"]
["chr17",19521355,19521357,2,-1,"  assembly comparison","ALDH3A2|GeneID=224"]
["chr17",21083147,21083148,1,-1,"  assembly comparison","MGC33894|GeneID=256302"]
["chr17",21087330,21087331,1,-1,"  assembly comparison","MGC33894|GeneID=256302"]
["chr17",21159136,21159137,1,-1,"  assembly comparison","MAP2K3|GeneID=5606"]
["chr17",23231163,23240224,4788,-1,"  mate pair","LOC201229|GeneID=201229"]
["chr17",23723333,23723334,1,-1,"  assembly comparison","SARM1|GeneID=23098"]
["chr17",23751849,23751850,1,-1,"  assembly comparison","SARM1|GeneID=23098/SLC46A1|GeneID=113235"]
["chr17",24101814,24101815,1,-1,"  assembly comparison","TRAF4|GeneID=9618"]
["chr17",24306073,24306074,1,-1,"  assembly comparison","SEZ6|GeneID=124925"]
["chr17",24610744,24610746,2,-1,"  assembly comparison","NUFIP2|GeneID=57532"]
["chr17",24612554,24612560,6,-1,"  assembly comparison","NUFIP2|GeneID=57532"]
["chr17",24613890,24613892,2,-1,"  assembly comparison","NUFIP2|GeneID=57532"]
["chr17",24977518,24977519,1,-1,"  assembly comparison","SSH2|GeneID=85464"]
["chr17",26578648,26587424,8777,-1,"  NimbleGen 42M","NF1|GeneID=4763"]
["chr17",26582336,26584220,1885,-1,"  Agilent 24M","NF1|GeneID=4763"]
["chr17",26611172,26613387,2216,-1,"  Agilent 24M","NF1|GeneID=4763"]
["chr17",26887778,26887779,1,-1,"  assembly comparison","RAB11FIP4|GeneID=84440"]
["chr17",27493584,27493607,24,-1,"  split read","RHOT1|GeneID=55288"]
["chr17",27502090,27502093,3,-1,"  assembly comparison","ARGFXP2|GeneID=503640"]
["chr17",27682503,27682504,1,-1,"  assembly comparison","C17orf75|GeneID=64149"]
["chr17",28343046,28343049,3,-1,"  assembly comparison","SPACA3|GeneID=124912"]
["chr17",29638968,29638969,1,-1,"  assembly comparison","CCL11|GeneID=6356"]
["chr17",30539616,30539618,2,-1,"  assembly comparison","UNC45B|GeneID=146862"]
["chr17",30703771,30703772,1,-1,"  assembly comparison","SLFN11|GeneID=91607"]
["chr17",30789258,30789259,1,-1,"  assembly comparison","SLFN13|GeneID=146857"]
["chr17",30791356,30791358,2,-1,"  assembly comparison","SLFN13|GeneID=146857"]
["chr17",30926031,30926035,4,-1,"  assembly comparison","PEX12|GeneID=5193"]
["chr17",31095668,31104285,4072,-1,"  mate pair","GAS2L2|GeneID=246176"]
["chr17",31352769,31352776,7,-1,"  assembly comparison","CCL15|GeneID=6359/CCL14|GeneID=6358"]
["chr17",32947513,32947514,1,-1,"  assembly comparison","DUSP14|GeneID=11072"]
["chr17",34213269,34219538,3622,-1,"  mate pair","CCDC49|GeneID=54883"]
["chr17",34259884,34259886,2,-1,"  assembly comparison","RPL23|GeneID=9349"]
["chr17",34475191,34475193,2,-1,"  assembly comparison","PLXDC1|GeneID=57125"]
["chr17",34941910,34941918,8,-1,"  assembly comparison","CRKRS|GeneID=51755"]
["chr17",35014570,35014574,4,-1,"  assembly comparison","NEUROD2|GeneID=4761"]
["chr17",35078120,35078121,1,-1,"  assembly comparison","PNMT|GeneID=5409"]
["chr17",35384734,35384735,1,-1,"  assembly comparison","GSDMA|GeneID=284110"]
["chr17",35550170,35550172,2,-1,"  assembly comparison","CASC3|GeneID=22794"]
["chr17",35604010,35604023,14,-1,"  split read","RAPGEFL1|GeneID=51195"]
["chr17",35629149,35629158,12,-1,"  split read","WIPF2|GeneID=147179"]
["chr17",35629165,35629177,12,-1,"  assembly comparison","WIPF2|GeneID=147179"]
["chr17",35767184,35767185,1,-1,"  assembly comparison","RARA|GeneID=5914"]
["chr17",35886201,35886207,6,-1,"  assembly comparison","TNS4|GeneID=84951"]
["chr17",35886646,35886647,1,-1,"  assembly comparison","TNS4|GeneID=84951"]
["chr17",36037506,36037507,1,-1,"  assembly comparison","SMARCE1|GeneID=6605"]
["chr17",36176257,36176259,2,-1,"  assembly comparison","KRT26|GeneID=353288"]
["chr17",36509422,36529934,20513,-1,"  NimbleGen 42M","KRTAP4-11|GeneID=85282"]
["chr17",36577657,36577746,90,-1,"  split read","KRTAP4-3|GeneID=85290"]
["chr17",36577762,36577852,90,-1,"  assembly comparison","KRTAP4-3|GeneID=85290"]
["chr17",36594005,36594008,3,-1,"  assembly comparison","KRTAP4-1|GeneID=85285"]
["chr17",36594337,36594394,57,-1,"  assembly comparison","KRTAP4-1|GeneID=85285"]
["chr17",36637732,36647822,10091,-1,"  NimbleGen 42M","KRTAP9-3|GeneID=83900/KRTAP9-9|GeneID=81870/KRTAP9-8|GeneID=83901"]
["chr17",36654295,36664171,15717,-1,"  mate pair","KRTAP9-4|GeneID=85280"]
["chr17",36725279,36725293,15,-1,"  split read","KRTAP17-1|GeneID=83902"]
["chr17",36725299,36725314,15,-1,"  assembly comparison","KRTAP17-1|GeneID=83902"]
["chr17",36869814,36869815,1,-1,"  assembly comparison","KRT32|GeneID=3882"]
["chr17",37133257,37133260,3,-1,"  assembly comparison","HAP1|GeneID=9001"]
["chr17",37232795,37232798,3,-1,"  assembly comparison","FKBP10|GeneID=60681"]
["chr17",37430320,37430321,1,-1,"  assembly comparison","NKIRAS2|GeneID=28511"]
["chr17",37718944,37718945,1,-1,"  assembly comparison","STAT3|GeneID=6774"]
["chr17",38086440,38100371,6433,-1,"  mate pair","CCR10|GeneID=2826/CNTNAP1|GeneID=8506"]
["chr17",38318521,38318529,8,-1,"  assembly comparison","G6PC|GeneID=2538"]
["chr17",38403991,38403992,1,-1,"  assembly comparison","RPL27|GeneID=6155"]
["chr17",38435470,38435471,1,-1,"  assembly comparison","RND2|GeneID=8153"]
["chr17",38450364,38450366,2,-1,"  assembly comparison","BRCA1|GeneID=672"]
["chr17",38596068,38703732,100591,-1,"  mate pair","NBR1|GeneID=4077"]
["chr17",38718492,38718493,1,-1,"  assembly comparison","NBR1|GeneID=4077"]
["chr17",39309571,39309575,4,-1,"  assembly comparison","MPP2|GeneID=4355"]
["chr17",39372275,39378543,3599,-1,"  mate pair","PPY|GeneID=5539"]
["chr17",39681743,39681746,3,-1,"  assembly comparison","SLC4A1|GeneID=6521"]
["chr17",40348288,40355783,5144,-1,"  mate pair","GFAP|GeneID=2670"]
["chr17",40457225,40457235,10,-1,"  assembly comparison","DCAKD|GeneID=79877"]
["chr17",40582260,40582261,1,-1,"  assembly comparison","HEXIM1|GeneID=10614"]
["chr17",40602482,40612148,4290,-1,"  mate pair","HEXIM2|GeneID=124790"]
["chr17",40668350,40675090,5468,-1,"  mate pair","FMNL1|GeneID=752"]
["chr17",41460462,41460463,1,-1,"  assembly comparison","MAPT|GeneID=4137"]
["chr17",43374227,43384456,3710,-1,"  mate pair","PNPO|GeneID=55163/ATAD4|GeneID=79170"]
["chr17",43492529,43492531,2,-1,"  assembly comparison","NFE2L1|GeneID=4779"]
["chr17",43543740,43555366,4488,-1,"  mate pair","SNX11|GeneID=29916"]
["chr17",43982270,43982271,1,-1,"  assembly comparison","HOXB3|GeneID=3213"]
["chr17",43984932,43984934,2,-1,"  assembly comparison","HOXB3|GeneID=3213"]
["chr17",43993900,44008130,4451,-1,"  mate pair","HOXB3|GeneID=3213/HOXB4|GeneID=3214"]
["chr17",44006511,44006512,1,-1,"  assembly comparison","HOXB3|GeneID=3213"]
["chr17",44008036,44008037,1,-1,"  assembly comparison","HOXB4|GeneID=3214"]
["chr17",44008079,44008082,3,-1,"  assembly comparison","HOXB4|GeneID=3214"]
["chr17",44045085,44045089,4,-1,"  assembly comparison","HOXB8|GeneID=3218"]
["chr17",44328144,44328145,1,-1,"  assembly comparison","ATP5G1|GeneID=516"]
["chr17",44728298,44728302,4,-1,"  assembly comparison","ZNF652|GeneID=22834"]
["chr17",45012637,45012638,1,-1,"  assembly comparison","NXPH3|GeneID=11248"]
["chr17",46267906,46267907,1,-1,"  assembly comparison","WFIKKN2|GeneID=124857"]
["chr17",46610305,46610308,3,-1,"  assembly comparison","MBTD1|GeneID=54799"]
["chr17",50394334,50394335,1,-1,"  assembly comparison","COX11|GeneID=1353"]
["chr17",50594942,50594943,1,-1,"  assembly comparison","STXBP4|GeneID=252983"]
["chr17",50697795,50697799,4,-1,"  assembly comparison","HLF|GeneID=3131"]
["chr17",50755919,50755920,1,-1,"  assembly comparison","HLF|GeneID=3131"]
["chr17",52027415,52027417,2,-1,"  assembly comparison","NOG|GeneID=9241"]
["chr17",52300271,52300272,1,-1,"  assembly comparison","DGKE|GeneID=8526"]
["chr17",52537811,52537812,1,-1,"  assembly comparison","AKAP1|GeneID=8165"]
["chr17",52552763,52552764,1,-1,"  assembly comparison","AKAP1|GeneID=8165"]
["chr17",53777606,53777609,3,-1,"  assembly comparison","SUPT4H1|GeneID=6827"]
["chr17",54390032,54399092,2398,-1,"  mate pair","PPM1E|GeneID=22843"]
["chr17",54413903,54413904,1,-1,"  assembly comparison","PPM1E|GeneID=22843"]
["chr17",54542931,54542932,1,-1,"  assembly comparison","FAM33A|GeneID=348235"]
["chr17",54832642,54832643,1,-1,"  assembly comparison","YPEL2|GeneID=388403"]
["chr17",55127992,55127995,3,-1,"  assembly comparison","CLTC|GeneID=1213"]
["chr17",55380812,55380813,1,-1,"  assembly comparison","RPS6KB1|GeneID=6198"]
["chr17",56502543,56502544,1,-1,"  assembly comparison","hCG_2001000|GeneID=729617"]
["chr17",59014626,59014627,1,-1,"  assembly comparison","WDR68|GeneID=10238"]
["chr17",59972325,59972326,1,-1,"  assembly comparison","SMURF2|GeneID=64750"]
["chr17",63417973,63417976,3,-1,"  assembly comparison","C17orf58|GeneID=284018"]
["chr17",63776178,63776180,2,-1,"  assembly comparison","SLC16A6|GeneID=9120"]
["chr17",63965170,63965179,9,-1,"  assembly comparison","WIPI1|GeneID=55062"]
["chr17",64483296,64483300,4,-1,"  assembly comparison","ABCA9|GeneID=10350"]
["chr17",64754147,64754148,1,-1,"  assembly comparison","ABCA5|GeneID=23461"]
["chr17",65612706,65612707,1,-1,"  assembly comparison","KCNJ16|GeneID=3773"]
["chr17",65685763,65685764,1,-1,"  assembly comparison","KCNJ2|GeneID=3759"]
["chr17",65686833,65686834,1,-1,"  assembly comparison","KCNJ2|GeneID=3759"]
["chr17",67634111,67634112,1,-1,"  assembly comparison","SOX9|GeneID=6662"]
["chr17",68154337,68154337,1,-1,"  assembly comparison","SLC39A11|GeneID=201266"]
["chr17",70425391,70425392,1,-1,"  assembly comparison","USH1G|GeneID=124590"]
["chr17",70512130,70512132,2,-1,"  assembly comparison","CDR2L|GeneID=30850"]
["chr17",70572279,70572283,4,-1,"  assembly comparison","KCTD2|GeneID=23510"]
["chr17",70826872,70826873,1,-1,"  assembly comparison","GRB2|GeneID=2885"]
["chr17",70827006,70827008,2,-1,"  assembly comparison","GRB2|GeneID=2885"]
["chr17",71585050,71585060,10,-1,"  assembly comparison","GALR2|GeneID=8811"]
["chr17",71778836,71778850,14,-1,"  assembly comparison","FAM100B|GeneID=283991"]
["chr17",71897525,71897528,3,-1,"  assembly comparison","UBE2O|GeneID=63893"]
["chr17",72073262,72073263,1,-1,"  assembly comparison","ST6GALNAC2|GeneID=10610"]
["chr17",72183594,72183595,1,-1,"  assembly comparison","MXRA7|GeneID=439921"]
["chr17",72457158,72457170,12,-1,"  assembly comparison","MGAT5B|GeneID=146664"]
["chr17",72458010,72458011,1,-1,"  assembly comparison","MGAT5B|GeneID=146664"]
["chr17",73000526,73001251,726,-1,"  NimbleGen 42M","SEPT9|GeneID=10801"]
["chr17",73615896,73615897,1,-1,"  assembly comparison","TNRC6C|GeneID=57690"]
["chr17",73900920,73910431,4525,-1,"  mate pair","PGS1|GeneID=9489"]
["chr17",74362610,74362611,1,-1,"  assembly comparison","TIMP2|GeneID=7077"]
["chr17",75421687,75421688,1,-1,"  assembly comparison","CBX4|GeneID=8535"]
["chr17",76024670,76024713,43,-1,"  assembly comparison","FLJ35220|GeneID=284131"]
["chr17",76055308,76055309,1,-1,"  assembly comparison","NPTX1|GeneID=4884"]
["chr17",76697783,76697786,3,-1,"  assembly comparison","BAIAP2|GeneID=10458"]
["chr17",76834099,76834102,3,-1,"  assembly comparison","SLC38A10|GeneID=124565"]
["chr17",77225342,77225346,4,-1,"  assembly comparison","TSPAN10|GeneID=83882"]
["chr17",77637039,77649749,4430,-1,"  mate pair","FASN|GeneID=2194"]
["chr17",77786976,77794303,4517,-1,"  mate pair","SLC16A3|GeneID=9123"]
["chr17",78154899,78154902,3,-1,"  assembly comparison","FOXK2|GeneID=3607"]
["chr17",78381160,78381164,4,-1,"  assembly comparison","ZNF750|GeneID=79755"]
["chr21",9965207,10199625,232308,-1,"  mate pair","TPTE|GeneID=7179/BAGE2|GeneID=85319/BAGE4|GeneID=85317/BAGE3|GeneID=85318/BAGE5|GeneID=85316/BAGE|GeneID=574"]
["chr21",10069064,10075741,2332,-1,"  mate pair","BAGE2|GeneID=85319/BAGE4|GeneID=85317/BAGE3|GeneID=85318/BAGE5|GeneID=85316"]
["chr21",10111323,10114683,2774,-1,"  mate pair","BAGE|GeneID=574"]
["chr21",10118653,10131414,12051,-1,"  mate pair","BAGE4|GeneID=85317/BAGE|GeneID=574/BAGE5|GeneID=85316/BAGE2|GeneID=85319/BAGE3|GeneID=85318"]
["chr21",14142492,14142497,5,-1,"  assembly comparison","C21orf15|GeneID=54094"]
["chr21",15256227,15256235,8,-1,"  assembly comparison","NRIP1|GeneID=8204"]
["chr21",15258374,15258375,1,-1,"  assembly comparison","NRIP1|GeneID=8204"]
["chr21",17859731,17861855,2125,-1,"  NimbleGen 42M","CXADR|GeneID=1525"]
["chr21",25725734,25725735,1,-1,"  assembly comparison","NCRNA00158|GeneID=54072"]
["chr21",26065525,26065526,1,-1,"  assembly comparison","GABPA|GeneID=2551"]
["chr21",27260822,27260827,5,-1,"  assembly comparison","ADAMTS5|GeneID=11096"]
["chr21",29169702,29169711,9,-1,"  assembly comparison","N6AMT1|GeneID=29104"]
["chr21",29313554,29313557,3,-1,"  assembly comparison","RWDD2B|GeneID=10069"]
["chr21",30835852,30835853,1,-1,"  assembly comparison","KRTAP19-6|GeneID=337973"]
["chr21",31123841,31123842,1,-1,"  assembly comparison","KRTAP7-1|GeneID=337878"]
["chr21",33558029,33558030,1,-1,"  assembly comparison","IFNAR2|GeneID=3455"]
["chr21",33651720,33651721,1,-1,"  assembly comparison","IFNAR1|GeneID=3454"]
["chr21",33744363,33744365,2,-1,"  assembly comparison","TMEM50B|GeneID=757"]
["chr21",33870566,33870567,1,-1,"  assembly comparison","SON|GeneID=6651"]
["chr21",34389244,34389245,1,-1,"  assembly comparison","SLC5A3|GeneID=6526"]
["chr21",34389342,34389343,1,-1,"  assembly comparison","SLC5A3|GeneID=6526"]
["chr21",34397484,34397485,1,-1,"  assembly comparison","SLC5A3|GeneID=6526"]
["chr21",34964333,34964362,30,-1,"  split read","CLIC6|GeneID=54102"]
["chr21",35332739,35332756,18,-1,"  split read","C21orf96|GeneID=80215"]
["chr21",35332763,35332779,16,-1,"  assembly comparison","C21orf96|GeneID=80215"]
["chr21",37043636,37043637,1,-1,"  assembly comparison","SIM2|GeneID=6493"]
["chr21",37367485,37367488,3,-1,"  assembly comparison","TTC3|GeneID=7267"]
["chr21",37518030,37518031,1,-1,"  assembly comparison","DSCR3|GeneID=10311"]
["chr21",37765673,37774512,3155,-1,"  mate pair","DYRK1A|GeneID=1859"]
["chr21",37807108,37807109,1,-1,"  assembly comparison","DYRK1A|GeneID=1859"]
["chr21",38674591,38674596,5,-1,"  assembly comparison","ERG|GeneID=2078"]
["chr21",39479515,39479517,2,-1,"  assembly comparison","BRWD1|GeneID=54014"]
["chr21",39480473,39480478,5,-1,"  assembly comparison","BRWD1|GeneID=54014"]
["chr21",39486735,39486736,1,-1,"  assembly comparison","BRWD1|GeneID=54014"]
["chr21",39489549,39489550,1,-1,"  assembly comparison","BRWD1|GeneID=54014"]
["chr21",39590535,39590536,1,-1,"  assembly comparison","BRWD1|GeneID=54014"]
["chr21",41713899,41725114,3698,-1,"  mate pair","MX1|GeneID=4599"]
["chr21",41967820,41981872,4604,-1,"  mate pair","NCRNA00111|GeneID=54090"]
["chr21",42179849,42179850,1,-1,"  assembly comparison","C2CD2|GeneID=25966"]
["chr21",42367423,42382425,5550,-1,"  mate pair","UMODL1|GeneID=89766"]
["chr21",43323439,43323457,18,-1,"  assembly comparison","PKNOX1|GeneID=5316"]
["chr21",43912166,43922016,2394,-1,"  mate pair","RRP1B|GeneID=23076"]
["chr21",43939494,43939495,1,-1,"  assembly comparison","RRP1B|GeneID=23076"]
["chr21",44048411,44048412,1,-1,"  assembly comparison","RRP1|GeneID=8568"]
["chr21",44472267,44472284,17,-1,"  assembly comparison","ICOSLG|GeneID=23308"]
["chr21",44795199,44795214,15,-1,"  assembly comparison","KRTAP10-2|GeneID=386679"]
["chr21",44845083,44845097,15,-1,"  split read","KRTAP10-7|GeneID=386675"]
["chr21",44846384,44846386,2,-1,"  assembly comparison","KRTAP10-7|GeneID=386675"]
["chr21",44882052,44882067,15,-1,"  assembly comparison","KRTAP10-10|GeneID=353333"]
["chr21",45172999,45173003,4,-1,"  assembly comparison","ITGB2|GeneID=3689"]
["chr21",45243789,45243790,1,-1,"  assembly comparison","NCRNA00162|GeneID=378825"]
["chr21",45469433,45469438,5,-1,"  assembly comparison","ADARB1|GeneID=104"]
["chr21",46248702,46248715,13,-1,"  assembly comparison","COL6A1|GeneID=1291"]
["chr21",46355933,46355994,62,-1,"  split read","COL6A2|GeneID=1292"]
["chr21",46624205,46629247,3451,-1,"  mate pair","PCNT|GeneID=5116"]
["chr16",46481,58285,4798,-1,"  mate pair","SNRNP25|GeneID=79622/RHBDF1|GeneID=64285"]
["chr16",273004,273008,4,-1,"  assembly comparison","ARHGDIG|GeneID=398"]
["chr16",382590,382591,1,-1,"  assembly comparison","LOC100134368|GeneID=100134368"]
["chr16",415982,415983,1,-1,"  assembly comparison","RAB11FIP3|GeneID=9727"]
["chr16",962079,973667,4192,-1,"  mate pair","SOX8|GeneID=30812"]
["chr16",1246561,1246562,1,-1,"  assembly comparison","TPSD1|GeneID=23430"]
["chr16",1666335,1666336,1,-1,"  assembly comparison","CRAMP1L|GeneID=57585"]
["chr16",1666523,1666525,2,-1,"  assembly comparison","CRAMP1L|GeneID=57585"]
["chr16",1938214,1949037,4836,-1,"  mate pair","RPL3L|GeneID=6123"]
["chr16",1999625,1999626,1,-1,"  assembly comparison","ZNF598|GeneID=90850"]
["chr16",1999738,1999739,1,-1,"  assembly comparison","ZNF598|GeneID=90850"]
["chr16",2028425,2028437,12,-1,"  assembly comparison","SLC9A3R2|GeneID=9351"]
["chr16",2074985,2074988,3,-1,"  assembly comparison","TSC2|GeneID=7249"]
["chr16",2087486,2110716,23231,-1,"  NimbleGen 42M","PKD1|GeneID=5310"]
["chr16",2591703,2591709,6,-1,"  assembly comparison","PDPK1|GeneID=5170"]
["chr16",2842984,2842990,6,-1,"  assembly comparison","PRSS22|GeneID=64063"]
["chr16",3017711,3017712,1,-1,"  assembly comparison","THOC6|GeneID=79228"]
["chr16",3213827,3213828,1,-1,"  assembly comparison","ZNF200|GeneID=7752"]
["chr16",3232688,3232691,3,-1,"  assembly comparison","MEFV|GeneID=4210"]
["chr16",3542230,3542231,1,-1,"  assembly comparison","NLRC3|GeneID=197358"]
["chr16",3643841,3643843,2,-1,"  assembly comparison","DNASE1|GeneID=1773"]
["chr16",3716428,3716441,13,-1,"  assembly comparison","CREBBP|GeneID=1387"]
["chr16",3953123,3953145,22,-1,"  assembly comparison","ADCY9|GeneID=115"]
["chr16",4247328,4247329,1,-1,"  assembly comparison","TFAP4|GeneID=7023"]
["chr16",4262999,4263005,6,-1,"  assembly comparison","TFAP4|GeneID=7023"]
["chr16",4837683,4839023,1341,-1,"  split read","UBN1|GeneID=29855"]
["chr16",7700847,7700851,4,-1,"  assembly comparison","A2BP1|GeneID=54715"]
["chr16",7701242,7701243,1,-1,"  assembly comparison","A2BP1|GeneID=54715"]
["chr16",8893982,8893987,5,-1,"  assembly comparison","USP7|GeneID=7874"]
["chr16",9118630,9118631,1,-1,"  assembly comparison","C16orf72|GeneID=29035"]
["chr16",10430234,10430235,1,-1,"  assembly comparison","ATF7IP2|GeneID=80063"]
["chr16",10484104,10484105,1,-1,"  assembly comparison","ATF7IP2|GeneID=80063"]
["chr16",10534098,10534099,1,-1,"  assembly comparison","EMP2|GeneID=2013"]
["chr16",11586519,11594789,2645,-1,"  mate pair","LITAF|GeneID=9516"]
["chr16",11830016,11830017,1,-1,"  assembly comparison","BCAR4|GeneID=400500"]
["chr16",11917031,11917037,6,-1,"  assembly comparison","GSPT1|GeneID=2935"]
["chr16",13952280,13952281,1,-1,"  assembly comparison","ERCC4|GeneID=2072"]
["chr16",13953657,13953658,1,-1,"  assembly comparison","ERCC4|GeneID=2072"]
["chr16",14437254,14437260,6,-1,"  assembly comparison","PARN|GeneID=5073"]
["chr16",15589418,15589419,1,-1,"  assembly comparison","C16orf45|GeneID=89927"]
["chr16",15867490,15867495,5,-1,"  assembly comparison","C16orf63|GeneID=123811"]
["chr16",17104129,17104130,1,-1,"  assembly comparison","XYLT1|GeneID=64131"]
["chr16",18981427,18981428,1,-1,"  assembly comparison","TMC7|GeneID=79905"]
["chr16",19090111,19103372,4300,-1,"  mate pair","SYT17|GeneID=51760"]
["chr16",19470594,19470598,4,-1,"  assembly comparison","CP110|GeneID=9738"]
["chr16",20229576,20229577,1,-1,"  assembly comparison","GP2|GeneID=2813"]
["chr16",20359780,20359781,1,-1,"  assembly comparison","ACSM5|GeneID=54988"]
["chr16",20652933,20652939,6,-1,"  assembly comparison","THUMPD1|GeneID=55623"]
["chr16",20654212,20654214,2,-1,"  assembly comparison","THUMPD1|GeneID=55623"]
["chr16",21170754,21170755,1,-1,"  assembly comparison","ANKS4B|GeneID=257629"]
["chr16",21170770,21170771,1,-1,"  assembly comparison","ANKS4B|GeneID=257629"]
["chr16",21236868,21236872,4,-1,"  assembly comparison","NCRNA00169|GeneID=400508"]
["chr16",22206828,22206829,1,-1,"  assembly comparison","EEF2K|GeneID=29904"]
["chr16",22981205,22981205,1,-1,"  assembly comparison","USP31|GeneID=57478"]
["chr16",22983661,22983662,1,-1,"  assembly comparison","USP31|GeneID=57478"]
["chr16",23432616,23442886,3606,-1,"  mate pair","EARS2|GeneID=124454"]
["chr16",23442658,23442659,1,-1,"  assembly comparison","EARS2|GeneID=124454"]
["chr16",23442809,23442814,5,-1,"  assembly comparison","EARS2|GeneID=124454"]
["chr16",23489782,23489783,1,-1,"  assembly comparison","UBFD1|GeneID=56061"]
["chr16",24175158,24175160,2,-1,"  assembly comparison","CACNG3|GeneID=10368"]
["chr16",24695929,24695941,12,-1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",24742917,24742918,1,-1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",24743461,24743462,1,-1,"  assembly comparison","TNRC6A|GeneID=27327"]
["chr16",25158099,25158100,1,-1,"  assembly comparison","ZKSCAN2|GeneID=342357"]
["chr16",28240021,28240039,18,-1,"  assembly comparison","SBK1|GeneID=388228"]
["chr16",28241740,28241762,22,-1,"  assembly comparison","SBK1|GeneID=388228"]
["chr16",28619032,28670408,51377,-1,"  NimbleGen 42M","EIF3C|GeneID=8663/EIF3CL|GeneID=728689"]
["chr16",29587268,29587272,4,-1,"  assembly comparison","SPN|GeneID=6693"]
["chr16",29587437,29587438,1,-1,"  assembly comparison","SPN|GeneID=6693"]
["chr16",29734572,29734573,1,-1,"  assembly comparison","PRRT2|GeneID=112476"]
["chr16",29734615,29734619,4,-1,"  assembly comparison","PRRT2|GeneID=112476"]
["chr16",29909991,29922739,4652,-1,"  mate pair","TAOK2|GeneID=9344/HIRIP3|GeneID=8479/INO80E|GeneID=283899"]
["chr16",30522201,30522202,1,-1,"  assembly comparison","ZNF689|GeneID=115509"]
["chr16",30676003,30676010,7,-1,"  assembly comparison","PHKG2|GeneID=5261"]
["chr16",30868107,30868108,1,-1,"  assembly comparison","ORAI3|GeneID=93129"]
["chr16",30911472,30911473,1,-1,"  assembly comparison","STX1B|GeneID=112755"]
["chr16",30999482,31009066,4458,-1,"  mate pair","ZNF646|GeneID=9726/POL3S|GeneID=339105"]
["chr16",45521858,45521859,1,-1,"  assembly comparison","GPT2|GeneID=84706"]
["chr16",45547864,45547865,1,-1,"  assembly comparison","DNAJA2|GeneID=10294"]
["chr16",48825111,48825112,1,-1,"  assembly comparison","PAPD5|GeneID=64282"]
["chr16",48825777,48825778,1,-1,"  assembly comparison","PAPD5|GeneID=64282"]
["chr16",49727943,49727944,1,-1,"  assembly comparison","SALL1|GeneID=6299"]
["chr16",51029922,51029927,5,-1,"  assembly comparison","TOX3|GeneID=27324"]
["chr16",51918181,51918183,2,-1,"  assembly comparison","CHD9|GeneID=80205"]
["chr16",52704707,52704708,1,-1,"  assembly comparison","FTO|GeneID=79068"]
["chr16",54176329,54176333,4,-1,"  assembly comparison","LPCAT2|GeneID=54947"]
["chr16",54353890,54379945,26056,-1,"  Affymetrix 6.0","CES4|GeneID=51716"]
["chr16",54948186,54948187,1,-1,"  assembly comparison","GNAO1|GeneID=2775"]
["chr16",55244542,55244543,1,-1,"  assembly comparison","MT1B|GeneID=4490"]
["chr16",55268497,55268512,15,-1,"  assembly comparison","MT1IP|GeneID=644314"]
["chr16",55275535,55275536,1,-1,"  assembly comparison","MT1X|GeneID=4501"]
["chr16",56474216,56474217,1,-1,"  assembly comparison","CNGB1|GeneID=1258"]
["chr16",57134828,57134829,1,-1,"  assembly comparison","CNOT1|GeneID=23019"]
["chr16",65767512,65767524,12,-1,"  assembly comparison","KIAA0895L|GeneID=653319"]
["chr16",66818331,66818338,12,-1,"  split read","NFATC3|GeneID=4775"]
["chr16",66951301,66951304,3,-1,"  assembly comparison","SMPD3|GeneID=55512"]
["chr16",66951761,66951762,1,-1,"  assembly comparison","SMPD3|GeneID=55512"]
["chr16",67273862,67278219,3242,-1,"  mate pair","CDH3|GeneID=1001"]
["chr16",67706736,67706737,1,-1,"  assembly comparison","HAS3|GeneID=3038"]
["chr16",67708992,67708996,4,-1,"  assembly comparison","HAS3|GeneID=3038"]
["chr16",67892381,67892382,1,-1,"  assembly comparison","SNTB2|GeneID=6645"]
["chr16",67898927,67898928,1,-1,"  assembly comparison","SNTB2|GeneID=6645"]
["chr16",68054260,68054264,4,-1,"  assembly comparison","CYB5B|GeneID=80777"]
["chr16",68713938,68767179,53242,-1,"  NimbleGen 42M","PDPR|GeneID=55066/MRCL|GeneID=283971"]
["chr16",69453517,69453518,1,-1,"  assembly comparison","HYDIN|GeneID=54768"]
["chr16",69512210,69512224,15,-1,"  split read","HYDIN|GeneID=54768"]
["chr16",69534921,69544561,3405,-1,"  mate pair","HYDIN|GeneID=54768"]
["chr16",70238087,70238091,4,-1,"  assembly comparison","PHLPPL|GeneID=23035"]
["chr16",70240019,70240020,1,-1,"  assembly comparison","PHLPPL|GeneID=23035"]
["chr16",70514029,70514035,6,-1,"  assembly comparison","KIAA0174|GeneID=9798"]
["chr16",72940041,72983204,43164,-1,"  Agilent 24M","NPIPL2|GeneID=440348"]
["chr16",73213861,73213862,1,-1,"  assembly comparison","RFWD3|GeneID=55159"]
["chr16",73464998,73464999,1,-1,"  assembly comparison","WDR59|GeneID=79726"]
["chr16",73703321,73703324,3,-1,"  assembly comparison","LDHD|GeneID=197257"]
["chr16",74066813,74066815,2,-1,"  assembly comparison","CHST6|GeneID=4166"]
["chr16",74068160,74068161,1,-1,"  assembly comparison","CHST6|GeneID=4166"]
["chr16",76622532,76622533,1,-1,"  assembly comparison","CLEC3A|GeneID=10143"]
["chr16",78186049,78186050,1,-1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",78189158,78189159,1,-1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",78191329,78191332,3,-1,"  assembly comparison","MAF|GeneID=4094"]
["chr16",79636344,79636345,1,-1,"  assembly comparison","ATMIN|GeneID=23300"]
["chr16",80302735,80302736,1,-1,"  assembly comparison","CMIP|GeneID=80790"]
["chr16",83499804,83499810,6,-1,"  assembly comparison","CRISPLD2|GeneID=83716"]
["chr16",84370454,84370455,1,-1,"  assembly comparison","COX4NB|GeneID=10328"]
["chr16",84513231,84513232,1,-1,"  assembly comparison","IRF8|GeneID=3394"]
["chr16",85105356,85105357,1,-1,"  assembly comparison","FOXF1|GeneID=2294"]
["chr16",86067608,86116994,49387,-1,"  NimbleGen 42M","ZCCHC14|GeneID=23174"]
["chr16",86274627,86282833,5448,-1,"  mate pair","JPH3|GeneID=57338"]
["chr16",86295523,86295634,111,-1,"  assembly comparison","LOC100129637|GeneID=100129637"]
["chr16",86296210,86296216,6,-1,"  assembly comparison","LOC100129637|GeneID=100129637"]
["chr16",87034110,87034111,1,-1,"  assembly comparison","ZNF469|GeneID=84627"]
["chr16",87754307,87754374,69,-1,"  split read","C16orf81|GeneID=283860"]
["chr3",423096,423097,1,-1,"  assembly comparison","CHL1|GeneID=10752"]
["chr3",3864078,3864080,2,-1,"  assembly comparison","LRRN1|GeneID=57633"]
["chr3",3864080,3864081,1,-1,"  assembly comparison","LRRN1|GeneID=57633"]
["chr3",8590575,8590576,1,-1,"  assembly comparison","LOH3CR2A|GeneID=29931"]
["chr3",8763365,8763366,1,-1,"  assembly comparison","CAV3|GeneID=859"]
["chr3",9403045,9403046,1,-1,"  assembly comparison","THUMPD3|GeneID=25917"]
["chr3",9962533,9962535,2,-1,"  assembly comparison","PRRT3|GeneID=285368"]
["chr3",10342224,10342225,1,-1,"  assembly comparison","ATP2B2|GeneID=491"]
["chr3",12915398,12915400,2,-1,"  assembly comparison","IQSEC1|GeneID=9922"]
["chr3",12917851,12917852,1,-1,"  assembly comparison","IQSEC1|GeneID=9922"]
["chr3",12983808,12997573,4737,-1,"  mate pair","IQSEC1|GeneID=9922"]
["chr3",13587793,13587794,1,-1,"  assembly comparison","FBLN2|GeneID=2199"]
["chr3",14172876,14172877,1,-1,"  assembly comparison","XPC|GeneID=7508"]
["chr3",14174970,14174971,1,-1,"  assembly comparison","XPC|GeneID=7508"]
["chr3",14175042,14175043,1,-1,"  assembly comparison","XPC|GeneID=7508"]
["chr3",14419247,14419248,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419253,14419254,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419281,14419282,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419290,14419291,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419312,14419313,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419322,14419323,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419330,14419331,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",14419333,14419334,1,-1,"  assembly comparison","SLC6A6|GeneID=6533"]
["chr3",15062062,15062063,1,-1,"  assembly comparison","NR2C2|GeneID=7182"]
["chr3",15458021,15458022,1,-1,"  assembly comparison","EAF1|GeneID=85403"]
["chr3",15876057,15876058,1,-1,"  assembly comparison","ANKRD28|GeneID=23243"]
["chr3",16245164,16245165,1,-1,"  assembly comparison","GALNTL2|GeneID=117248"]
["chr3",16245165,16245166,1,-1,"  assembly comparison","GALNTL2|GeneID=117248"]
["chr3",16604322,16604323,1,-1,"  assembly comparison","DAZL|GeneID=1618"]
["chr3",18440250,18440251,1,-1,"  assembly comparison","SATB1|GeneID=6304"]
["chr3",23994991,23994992,1,-1,"  assembly comparison","NR1D2|GeneID=9975"]
["chr3",30743905,30743907,2,-1,"  assembly comparison","GADL1|GeneID=339896"]
["chr3",31647526,31651778,3830,-1,"  mate pair","STT3B|GeneID=201595"]
["chr3",37004113,37004114,1,-1,"  assembly comparison","EPM2AIP1|GeneID=9852"]
["chr3",37069183,37069186,3,-1,"  assembly comparison","LRRFIP2|GeneID=9209"]
["chr3",38501172,38501174,2,-1,"  assembly comparison","ACVR2B|GeneID=93"]
["chr3",38502185,38502188,3,-1,"  assembly comparison","ACVR2B|GeneID=93"]
["chr3",38509263,38509299,36,-1,"  assembly comparison","ACVR2B|GeneID=93"]
["chr3",38862307,38862309,2,-1,"  assembly comparison","SCN11A|GeneID=11280"]
["chr3",39112805,39112806,1,-1,"  assembly comparison","WDR48|GeneID=57599"]
["chr3",39413656,39413657,1,-1,"  assembly comparison","SLC25A38|GeneID=54977"]
["chr3",39531502,39531510,8,-1,"  assembly comparison","MOBP|GeneID=4336"]
["chr3",40276490,40276493,3,-1,"  assembly comparison","MYRIP|GeneID=25924"]
["chr3",40328848,40328849,1,-1,"  assembly comparison","EIF1B|GeneID=10289"]
["chr3",40550981,40550982,1,-1,"  assembly comparison","ZNF621|GeneID=285268"]
["chr3",42226610,42226613,3,-1,"  assembly comparison","TRAK1|GeneID=22906"]
["chr3",42226918,42226919,1,-1,"  assembly comparison","TRAK1|GeneID=22906"]
["chr3",42800588,42800589,1,-1,"  assembly comparison","HIGD1A|GeneID=25994"]
["chr3",42935134,42935140,6,-1,"  assembly comparison","ZNF662|GeneID=389114"]
["chr3",43073536,43073537,1,-1,"  assembly comparison","LOC729085|GeneID=729085"]
["chr3",44424414,44435904,5546,-1,"  mate pair","C3orf23|GeneID=285343"]
["chr3",44588098,44588099,1,-1,"  assembly comparison","ZNF167|GeneID=55888"]
["chr3",44934739,44934740,1,-1,"  assembly comparison","ZDHHC3|GeneID=51304"]
["chr3",45773689,45773691,2,-1,"  assembly comparison","SLC6A20|GeneID=54716"]
["chr3",46218718,46218719,1,-1,"  assembly comparison","CCR1|GeneID=1230"]
["chr3",46598020,46598021,1,-1,"  assembly comparison","TDGF1|GeneID=6997"]
["chr3",46726078,46726081,3,-1,"  assembly comparison","TMIE|GeneID=259236"]
["chr3",47025917,47025918,1,-1,"  assembly comparison","NBEAL2|GeneID=23218"]
["chr3",47361443,47361444,1,-1,"  assembly comparison","KLHL18|GeneID=23276"]
["chr3",47867380,47867383,3,-1,"  assembly comparison","MAP4|GeneID=4134"]
["chr3",48574134,48574225,91,-1,"  assembly comparison","UCN2|GeneID=90226"]
["chr3",49290591,49290592,1,-1,"  assembly comparison","USP4|GeneID=7375"]
["chr3",49370677,49370680,3,-1,"  assembly comparison","GPX1|GeneID=2876"]
["chr3",49370694,49370697,3,-1,"  assembly comparison","GPX1|GeneID=2876"]
["chr3",49683593,49683595,2,-1,"  assembly comparison","BSN|GeneID=8927"]
["chr3",49951230,49952657,1683,-1,"  mate pair","RBM6|GeneID=10180"]
["chr3",50266314,50277245,5202,-1,"  mate pair","GNAI2|GeneID=2771"]
["chr3",50399496,50401819,3866,-1,"  mate pair","CACNA2D2|GeneID=9254"]
["chr3",50660581,50660582,1,-1,"  assembly comparison","MAPKAPK3|GeneID=7867"]
["chr3",52501917,52501923,6,-1,"  assembly comparison","NISCH|GeneID=11188"]
["chr3",53296426,53296427,1,-1,"  assembly comparison","DCP1A|GeneID=55802"]
["chr3",53299862,53299868,6,-1,"  assembly comparison","DCP1A|GeneID=55802"]
["chr3",53877262,53877263,1,-1,"  assembly comparison","ACTR8|GeneID=93973"]
["chr3",55475965,55475966,1,-1,"  assembly comparison","WNT5A|GeneID=7474"]
["chr3",55476447,55476448,1,-1,"  assembly comparison","WNT5A|GeneID=7474"]
["chr3",55519348,55519349,1,-1,"  assembly comparison","ERC2|GeneID=26059"]
["chr3",57101668,57101669,1,-1,"  assembly comparison","IL17RD|GeneID=54756"]
["chr3",58280411,58280412,1,-1,"  assembly comparison","RPP14|GeneID=11102"]
["chr3",58388392,58388394,2,-1,"  assembly comparison","PDHB|GeneID=5162"]
["chr3",58494776,58494780,4,-1,"  assembly comparison","ACOX2|GeneID=8309"]
["chr3",62506096,62514667,2736,-1,"  mate pair","CADPS|GeneID=8618"]
["chr3",64059208,64059209,1,-1,"  assembly comparison","PRICKLE2|GeneID=166336"]
["chr3",66513028,66513029,1,-1,"  assembly comparison","LRIG1|GeneID=26018"]
["chr3",71088572,71088573,1,-1,"  assembly comparison","FOXP1|GeneID=27086"]
["chr3",71088612,71088614,2,-1,"  assembly comparison","FOXP1|GeneID=27086"]
["chr3",71090578,71090579,1,-1,"  assembly comparison","FOXP1|GeneID=27086"]
["chr3",71816234,71816235,1,-1,"  assembly comparison","EIF4E3|GeneID=317649"]
["chr3",72508032,72508036,4,-1,"  assembly comparison","RYBP|GeneID=23429"]
["chr3",75553821,75553822,1,-1,"  assembly comparison","FAM86D|GeneID=692099"]
["chr3",75869513,75869521,9,-1,"  assembly comparison","ZNF717|GeneID=100131827"]
["chr3",88186851,88186853,2,-1,"  assembly comparison","CGGBP1|GeneID=8545"]
["chr3",88273860,88273861,1,-1,"  assembly comparison","ZNF654|GeneID=55279"]
["chr3",89532050,89532051,1,-1,"  assembly comparison","EPHA3|GeneID=2042"]
["chr3",95205239,95205240,1,-1,"  assembly comparison","ARL13B|GeneID=200894"]
["chr3",99998586,99998588,2,-1,"  assembly comparison","DCBLD2|GeneID=131566"]
["chr3",102714747,102714748,1,-1,"  assembly comparison","SENP7|GeneID=57337"]
["chr3",106859937,106859938,1,-1,"  assembly comparison","CBLB|GeneID=868"]
["chr3",108974454,108974457,3,-1,"  assembly comparison","BBX|GeneID=56987"]
["chr3",109007666,109007668,2,-1,"  assembly comparison","BBX|GeneID=56987"]
["chr3",109129700,109129701,1,-1,"  assembly comparison","LOC285205|GeneID=285205"]
["chr3",109245979,109245997,18,-1,"  assembly comparison","CD47|GeneID=961"]
["chr3",109363084,109363085,1,-1,"  assembly comparison","IFT57|GeneID=55081"]
["chr3",110385102,110385103,1,-1,"  assembly comparison","C3orf66|GeneID=677779"]
["chr3",114202820,114202821,1,-1,"  assembly comparison","GTPBP8|GeneID=29083"]
["chr3",114646050,114646051,1,-1,"  assembly comparison","CCDC52|GeneID=152185"]
["chr3",114853646,114853658,13,-1,"  split read","KIAA2018|GeneID=205717"]
["chr3",114853667,114853677,10,-1,"  assembly comparison","KIAA2018|GeneID=205717"]
["chr3",114858834,114858837,3,-1,"  assembly comparison","KIAA2018|GeneID=205717"]
["chr3",115437757,115437758,1,-1,"  assembly comparison","ZNF80|GeneID=7634"]
["chr3",120609831,120618357,3029,-1,"  mate pair","CDGAP|GeneID=57514"]
["chr3",121528805,121528806,1,-1,"  assembly comparison","LRRC58|GeneID=116064"]
["chr3",121983267,121983268,1,-1,"  assembly comparison","GTF2E1|GeneID=2960"]
["chr3",122789514,122789516,2,-1,"  assembly comparison","ARGFX|GeneID=503582"]
["chr3",123321487,123321489,2,-1,"  assembly comparison","CD86|GeneID=942"]
["chr3",123930987,123930988,1,-1,"  assembly comparison","PARP14|GeneID=54625"]
["chr3",124814466,124814467,1,-1,"  assembly comparison","MYLK|GeneID=4638"]
["chr3",124815580,124815581,1,-1,"  assembly comparison","MYLK|GeneID=4638"]
["chr3",124836246,124841960,4122,-1,"  mate pair","MYLK|GeneID=4638"]
["chr3",126169009,126169010,1,-1,"  assembly comparison","HEG1|GeneID=57493"]
["chr3",126428266,126428267,1,-1,"  assembly comparison","ZNF148|GeneID=7707"]
["chr3",126430753,126430754,1,-1,"  assembly comparison","ZNF148|GeneID=7707"]
["chr3",126433875,126433876,1,-1,"  assembly comparison","ZNF148|GeneID=7707"]
["chr3",127544697,127544706,9,-1,"  assembly comparison","KLF15|GeneID=28999"]
["chr3",127659786,127659787,1,-1,"  assembly comparison","ZXDC|GeneID=79364"]
["chr3",129282540,129282544,4,-1,"  assembly comparison","RUVBL1|GeneID=8607"]
["chr3",130370161,130370162,1,-1,"  assembly comparison","CNBP|GeneID=7555"]
["chr3",130851828,130851829,1,-1,"  assembly comparison","TMCC1|GeneID=23023"]
["chr3",131297625,131297626,1,-1,"  assembly comparison","LOC644974|GeneID=644974"]
["chr3",131547352,131547371,19,-1,"  assembly comparison","COL29A1|GeneID=256076"]
["chr3",131673412,131673413,1,-1,"  assembly comparison","COL29A1|GeneID=256076"]
["chr3",134597697,134597698,1,-1,"  assembly comparison","TMEM108|GeneID=66000"]
["chr3",135687533,135687534,1,-1,"  assembly comparison","ANAPC13|GeneID=25847/CEP63|GeneID=80254"]
["chr3",137351063,137351067,4,-1,"  assembly comparison","MSL2|GeneID=55167"]
["chr3",138021077,138021079,2,-1,"  assembly comparison","TMEM22|GeneID=80723"]
["chr3",140246325,140246328,3,-1,"  assembly comparison","FLJ46210|GeneID=389152"]
["chr3",140306608,140306609,1,-1,"  assembly comparison","BPESC1|GeneID=60467"]
["chr3",142495180,142495186,6,-1,"  assembly comparison","ACPL2|GeneID=92370"]
["chr3",143127836,143127837,1,-1,"  assembly comparison","ATP1B3|GeneID=483"]
["chr3",143362621,143362628,7,-1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",143364544,143364545,1,-1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",143366994,143366995,1,-1,"  assembly comparison","GK5|GeneID=256356"]
["chr3",143509598,143509602,4,-1,"  assembly comparison","XRN1|GeneID=54464"]
["chr3",147393539,147393540,1,-1,"  assembly comparison","PLSCR4|GeneID=57088"]
["chr3",151744256,151744257,1,-1,"  assembly comparison","SERP1|GeneID=27230"]
["chr3",151786004,151786008,4,-1,"  assembly comparison","EIF2A|GeneID=83939"]
["chr3",152128135,152128137,2,-1,"  assembly comparison","CLRN1|GeneID=7401"]
["chr3",152633431,152633432,1,-1,"  assembly comparison","MED12L|GeneID=116931"]
["chr3",155440986,155440990,4,-1,"  assembly comparison","SGEF|GeneID=26084"]
["chr3",157737732,157737735,3,-1,"  assembly comparison","KCNAB1|GeneID=7881"]
["chr3",157738629,157738630,1,-1,"  assembly comparison","KCNAB1|GeneID=7881"]
["chr3",157738792,157738793,1,-1,"  assembly comparison","KCNAB1|GeneID=7881"]
["chr3",157739521,157739525,4,-1,"  assembly comparison","KCNAB1|GeneID=7881"]
["chr3",158461391,158461396,5,-1,"  assembly comparison","VEPH1|GeneID=79674"]
["chr3",158801116,158801118,2,-1,"  assembly comparison","C3orf55|GeneID=152078"]
["chr3",170864004,170864012,8,-1,"  assembly comparison","MDS1|GeneID=4197"]
["chr3",171166502,171166503,1,-1,"  assembly comparison","LOC100128164|GeneID=100128164"]
["chr3",171593117,171593119,2,-1,"  assembly comparison","SKIL|GeneID=6498"]
["chr3",171633641,171633642,1,-1,"  assembly comparison","CLDN11|GeneID=5010"]
["chr3",172092930,172092931,1,-1,"  assembly comparison","EIF5A2|GeneID=56648"]
["chr3",173598296,173598297,1,-1,"  assembly comparison","FNDC3B|GeneID=64778"]
["chr3",173600150,173600151,1,-1,"  assembly comparison","FNDC3B|GeneID=64778"]
["chr3",173600329,173600330,1,-1,"  assembly comparison","FNDC3B|GeneID=64778"]
["chr3",173831609,173831610,1,-1,"  assembly comparison","AADACL1|GeneID=57552"]
["chr3",180401931,180402892,962,-1,"  Agilent 24M","PIK3CA|GeneID=5290"]
["chr3",180597229,180597233,4,-1,"  assembly comparison","GNB4|GeneID=59345"]
["chr3",182810912,182810913,1,-1,"  assembly comparison","SOX2OT|GeneID=347689"]
["chr3",184378976,184378980,4,-1,"  assembly comparison","MCF2L2|GeneID=23101"]
["chr3",185450191,185450192,1,-1,"  assembly comparison","ECE2|GeneID=9718"]
["chr3",185782752,185782764,12,-1,"  assembly comparison","EPHB3|GeneID=2049"]
["chr3",186845083,186845084,1,-1,"  assembly comparison","IGF2BP2|GeneID=10644"]
["chr3",188164313,188164314,1,-1,"  assembly comparison","ST6GAL1|GeneID=6480"]
["chr3",188400950,188400951,1,-1,"  assembly comparison","RTP1|GeneID=132112"]
["chr3",189379546,189379548,2,-1,"  assembly comparison","FLJ42393|GeneID=401105"]
["chr3",191157959,191157963,4,-1,"  assembly comparison","LEPREL1|GeneID=55214"]
["chr3",191508312,191508313,1,-1,"  assembly comparison","CLDN1|GeneID=9076"]
["chr3",192468278,192468281,3,-1,"  assembly comparison","UTS2D|GeneID=257313"]
["chr3",193342961,193342962,1,-1,"  assembly comparison","FGF12|GeneID=2257"]
["chr3",194441621,194441625,4,-1,"  assembly comparison","HRASLS|GeneID=57110"]
["chr3",195559248,195559312,65,-1,"  split read","LRRC15|GeneID=131578"]
["chr3",196723108,196723109,1,-1,"  assembly comparison","PPP1R2|GeneID=5504"]
["chr3",196724300,196724301,1,-1,"  assembly comparison","PPP1R2|GeneID=5504"]
["chr3",196959446,196959448,2,-1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",196995748,196995843,96,-1,"  split read","MUC4|GeneID=4585"]
["chr3",196995893,196995941,48,-1,"  assembly comparison","MUC4|GeneID=4585"]
["chr3",196997531,196999402,1872,-1,"  split read","MUC4|GeneID=4585"]
["chr3",197567306,197567308,2,-1,"  assembly comparison","UBXN7|GeneID=26043"]
["chr3",197796142,197796143,1,-1,"  assembly comparison","FBXO45|GeneID=200933"]
["chr3",197798169,197798170,1,-1,"  assembly comparison","FBXO45|GeneID=200933"]
["chr3",197918050,197918053,3,-1,"  assembly comparison","C3orf34|GeneID=84984"]
["chr3",197918316,197918317,1,-1,"  assembly comparison","C3orf34|GeneID=84984"]
["chr3",197946586,197946588,2,-1,"  assembly comparison","PIGX|GeneID=54965"]
["chr3",197946588,197946592,4,-1,"  assembly comparison","PIGX|GeneID=54965"]
["chr3",198039632,198041750,2119,-1,"  NimbleGen 42M","PAK2|GeneID=5062"]
["chr3",198143996,198144008,13,-1,"  split read","SENP5|GeneID=205564"]
["chr3",198144020,198144024,4,-1,"  assembly comparison","SENP5|GeneID=205564"]
["chr3",198154902,198154903,1,-1,"  assembly comparison","LOC152217|GeneID=152217"]
["chr3",198254752,198254756,4,-1,"  assembly comparison","DLG1|GeneID=1739"]
["chr3",198721978,198721984,6,-1,"  assembly comparison","BDH1|GeneID=622"]
["chr18",202594,202596,2,-1,"  assembly comparison","USP14|GeneID=9097"]
["chr18",712009,712011,2,-1,"  assembly comparison","YES1|GeneID=7525"]
["chr18",899874,899887,14,-1,"  split read","ADCYAP1|GeneID=116"]
["chr18",899905,899907,2,-1,"  assembly comparison","ADCYAP1|GeneID=116"]
["chr18",900889,900890,1,-1,"  assembly comparison","ADCYAP1|GeneID=116"]
["chr18",901376,901377,1,-1,"  assembly comparison","ADCYAP1|GeneID=116"]
["chr18",2793693,2793697,4,-1,"  assembly comparison","SMCHD1|GeneID=23347"]
["chr18",2794548,2794549,1,-1,"  assembly comparison","SMCHD1|GeneID=23347"]
["chr18",2936570,2936571,1,-1,"  assembly comparison","LOC727896|GeneID=727896"]
["chr18",3252106,3252118,12,-1,"  assembly comparison","MRLC2|GeneID=103910"]
["chr18",3448202,3448203,1,-1,"  assembly comparison","TGIF1|GeneID=7050"]
["chr18",5280595,5280596,1,-1,"  assembly comparison","ZFP161|GeneID=7541"]
["chr18",5280625,5280626,1,-1,"  assembly comparison","ZFP161|GeneID=7541"]
["chr18",6904588,6904589,1,-1,"  assembly comparison","ARHGAP28|GeneID=79822"]
["chr18",6905541,6905545,4,-1,"  assembly comparison","ARHGAP28|GeneID=79822"]
["chr18",8626113,8629190,3986,-1,"  mate pair","RAB12|GeneID=201475"]
["chr18",8629145,8629146,2,-1,"  assembly comparison","RAB12|GeneID=201475"]
["chr18",8629185,8629190,5,-1,"  assembly comparison","RAB12|GeneID=201475"]
["chr18",9947045,9947046,1,-1,"  assembly comparison","VAPA|GeneID=9218"]
["chr18",11842624,11842626,2,-1,"  assembly comparison","CHMP1B|GeneID=57132"]
["chr18",11871515,11871516,1,-1,"  assembly comparison","GNAL|GeneID=2774"]
["chr18",12421382,12421395,13,-1,"  assembly comparison","SLMO1|GeneID=10650"]
["chr18",12436734,12436735,1,-1,"  assembly comparison","SPIRE1|GeneID=56907"]
["chr18",13655401,13655406,5,-1,"  assembly comparison","C18orf19|GeneID=125228"]
["chr18",13873615,13873631,16,-1,"  assembly comparison","MC2R|GeneID=4158"]
["chr18",14094814,14096367,1554,-1,"  Agilent 24M","ZNF519|GeneID=162655"]
["chr18",14501909,14501917,8,-1,"  assembly comparison","POTEC|GeneID=388468"]
["chr18",14830624,14830624,1,-1,"  assembly comparison","ANKRD30B|GeneID=374860"]
["chr18",17703763,17703764,1,-1,"  assembly comparison","MIB1|GeneID=57534"]
["chr18",19093950,19093951,1,-1,"  assembly comparison","CABLES1|GeneID=91768"]
["chr18",19316489,19316490,1,-1,"  assembly comparison","RIOK3|GeneID=8780"]
["chr18",19968225,19968227,2,-1,"  assembly comparison","TTC39C|GeneID=125488"]
["chr18",19997047,19997048,1,-1,"  assembly comparison","OSBPL1A|GeneID=114876"]
["chr18",20287480,20287483,3,-1,"  assembly comparison","IMPACT|GeneID=55364"]
["chr18",23785046,23785047,2,-1,"  assembly comparison","CDH2|GeneID=1000"]
["chr18",23785137,23785138,1,-1,"  assembly comparison","CDH2|GeneID=1000"]
["chr18",23785596,23785597,1,-1,"  assembly comparison","CDH2|GeneID=1000"]
["chr18",26826138,26826139,1,-1,"  assembly comparison","DSC3|GeneID=1825"]
["chr18",26826150,26826153,3,-1,"  assembly comparison","DSC3|GeneID=1825"]
["chr18",27682803,27685173,2314,-1,"  mate pair","KIAA1012|GeneID=22878"]
["chr18",27903180,27903181,1,-1,"  assembly comparison","RNF125|GeneID=54941"]
["chr18",30700952,30700953,1,-1,"  assembly comparison","DTNA|GeneID=1837"]
["chr18",30975626,30975630,4,-1,"  assembly comparison","MAPRE2|GeneID=10982"]
["chr18",30975908,30975912,4,-1,"  assembly comparison","MAPRE2|GeneID=10982"]
["chr18",31141276,31141277,1,-1,"  assembly comparison","ZNF271|GeneID=10778"]
["chr18",31302423,31302424,1,-1,"  assembly comparison","INO80C|GeneID=125476"]
["chr18",32021203,32030994,4554,-1,"  mate pair","MOCOS|GeneID=55034"]
["chr18",39102386,39102387,1,-1,"  assembly comparison","SYT4|GeneID=6860"]
["chr18",41512838,41519439,3887,-1,"  mate pair","SLC14A2|GeneID=8170"]
["chr18",41585318,41585321,3,-1,"  assembly comparison","SLC14A1|GeneID=6563"]
["chr18",41683063,41683064,1,-1,"  assembly comparison","KIAA1632|GeneID=57724"]
["chr18",42685000,42692660,4455,-1,"  mate pair","PIAS2|GeneID=9063"]
["chr18",43619403,43619404,1,-1,"  assembly comparison","SMAD2|GeneID=4087"]
["chr18",44538050,44550340,5556,-1,"  mate pair","KIAA0427|GeneID=9811"]
["chr18",46173116,46173117,1,-1,"  assembly comparison","C18orf24|GeneID=220134"]
["chr18",46864372,46864387,16,-1,"  assembly comparison","SMAD4|GeneID=4089"]
["chr18",49963410,49974316,2364,-1,"  mate pair","MBD2|GeneID=8932"]
["chr18",50049964,50049967,3,-1,"  assembly comparison","POLI|GeneID=11201"]
["chr18",50720127,50720128,1,-1,"  assembly comparison","CCDC68|GeneID=80323"]
["chr18",50722327,50722328,1,-1,"  assembly comparison","CCDC68|GeneID=80323"]
["chr18",53295026,53295027,1,-1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53298818,53298820,2,-1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53299370,53299371,1,-1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53299391,53299392,1,-1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53301350,53301351,1,-1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53307131,53307132,1,-1,"  assembly comparison","ONECUT2|GeneID=9480"]
["chr18",53464708,53464709,1,-1,"  assembly comparison","ATP8B1|GeneID=5205"]
["chr18",54216369,54216370,1,-1,"  assembly comparison","NEDD4L|GeneID=23327"]
["chr18",54355370,54355384,15,-1,"  split read","ALPK2|GeneID=115701"]
["chr18",58395976,58395978,2,-1,"  assembly comparison","ZCCHC2|GeneID=54877"]
["chr18",59146582,59146583,1,-1,"  assembly comparison","KDSR|GeneID=2531"]
["chr18",59149479,59149481,2,-1,"  assembly comparison","KDSR|GeneID=2531"]
["chr18",59207430,59207433,3,-1,"  assembly comparison","VPS4B|GeneID=9525"]
["chr18",59322096,59322097,1,-1,"  assembly comparison","SERPINB5|GeneID=5268"]
["chr18",63325587,63325589,2,-1,"  assembly comparison","DSEL|GeneID=92126"]
["chr18",63327122,63327123,1,-1,"  assembly comparison","DSEL|GeneID=92126"]
["chr18",65660373,65660375,2,-1,"  assembly comparison","DOK6|GeneID=220164"]
["chr18",65665989,65665990,2,-1,"  assembly comparison","DOK6|GeneID=220164"]
["chr18",65666235,65666237,2,-1,"  assembly comparison","DOK6|GeneID=220164"]
["chr18",65666271,65666279,8,-1,"  assembly comparison","DOK6|GeneID=220164"]
["chr18",70240950,70283616,8978,-1,"  mate pair","C18orf51|GeneID=125704"]
["chr18",72201759,72201765,6,-1,"  assembly comparison","ZNF516|GeneID=9658"]
["chr18",72203069,72203070,1,-1,"  assembly comparison","ZNF516|GeneID=9658"]
["chr18",72219951,72219952,1,-1,"  assembly comparison","ZNF516|GeneID=9658"]
["chr18",72856209,72856210,1,-1,"  assembly comparison","MBP|GeneID=4155"]
["chr18",73110229,73110230,1,-1,"  assembly comparison","GALR1|GeneID=2587"]
["chr18",74858795,74858798,3,-1,"  assembly comparison","SALL3|GeneID=27164"]
["chr18",74858886,74858887,1,-1,"  assembly comparison","SALL3|GeneID=27164"]
["chr18",74859019,74859021,2,-1,"  assembly comparison","SALL3|GeneID=27164"]
["chr18",75576175,75576178,3,-1,"  assembly comparison","CTDP1|GeneID=9150"]
["chr18",75584506,75594314,3466,-1,"  mate pair","CTDP1|GeneID=9150"]
["chr18",75831573,75831574,1,-1,"  assembly comparison","LOC440498|GeneID=440498"]
["chr18",75999164,75999165,1,-1,"  assembly comparison","ADNP2|GeneID=22850"]
["chr12",368541,368542,1,-1,"  assembly comparison","JARID1A|GeneID=5927"]
["chr12",368542,368543,1,-1,"  assembly comparison","JARID1A|GeneID=5927"]
["chr12",418661,427012,4739,-1,"  mate pair","CCDC77|GeneID=84318"]
["chr12",891948,891950,2,-1,"  assembly comparison","RAD52|GeneID=5893"]
["chr12",892172,892177,5,-1,"  assembly comparison","RAD52|GeneID=5893"]
["chr12",2674528,2674529,1,-1,"  assembly comparison","CACNA1C|GeneID=775"]
["chr12",2919764,2919765,1,-1,"  assembly comparison","TULP3|GeneID=7289"]
["chr12",2920487,2920489,2,-1,"  assembly comparison","TULP3|GeneID=7289"]
["chr12",3790104,3790112,8,-1,"  assembly comparison","PARP11|GeneID=57097"]
["chr12",4280792,4280793,1,-1,"  assembly comparison","CCND2|GeneID=894"]
["chr12",4281125,4281126,1,-1,"  assembly comparison","CCND2|GeneID=894"]
["chr12",4284414,4284415,1,-1,"  assembly comparison","CCND2|GeneID=894"]
["chr12",4284437,4284438,1,-1,"  assembly comparison","CCND2|GeneID=894"]
["chr12",4349425,4349429,4,-1,"  assembly comparison","FGF23|GeneID=8074"]
["chr12",4894569,4894571,2,-1,"  assembly comparison","KCNA1|GeneID=3736"]
["chr12",6307912,6307913,1,-1,"  assembly comparison","PLEKHG6|GeneID=55200"]
["chr12",6598770,6598772,2,-1,"  assembly comparison","LPAR5|GeneID=57121"]
["chr12",6598798,6598803,5,-1,"  assembly comparison","LPAR5|GeneID=57121"]
["chr12",6647371,6647374,3,-1,"  assembly comparison","ZNF384|GeneID=171017"]
["chr12",6728249,6728250,1,-1,"  assembly comparison","MLF2|GeneID=8079"]
["chr12",6732596,6732597,1,-1,"  assembly comparison","MLF2|GeneID=8079"]
["chr12",7138307,7138308,1,-1,"  assembly comparison","C1RL|GeneID=51279"]
["chr12",7202705,7202707,2,-1,"  assembly comparison","CLSTN3|GeneID=9746"]
["chr12",7233634,7233650,17,-1,"  split read","PEX5|GeneID=5830"]
["chr12",7234402,7234446,45,-1,"  split read","PEX5|GeneID=5830"]
["chr12",7839153,7839156,3,-1,"  assembly comparison","NANOG|GeneID=79923"]
["chr12",7839183,7839184,1,-1,"  assembly comparison","NANOG|GeneID=79923"]
["chr12",7839184,7839186,2,-1,"  assembly comparison","NANOG|GeneID=79923"]
["chr12",7839455,7839456,1,-1,"  assembly comparison","NANOG|GeneID=79923"]
["chr12",8140656,8140657,1,-1,"  assembly comparison","NECAP1|GeneID=25977"]
["chr12",8243819,8243820,1,-1,"  assembly comparison","FAM66C|GeneID=440078"]
["chr12",8919958,8919959,1,-1,"  assembly comparison","A2ML1|GeneID=144568"]
["chr12",9463369,9463369,1,-1,"  assembly comparison","DDX12|GeneID=440081"]
["chr12",9740425,9740426,1,-1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9740912,9740915,3,-1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9741591,9741592,1,-1,"  assembly comparison","CLEC2D|GeneID=29121"]
["chr12",9885716,9885719,3,-1,"  assembly comparison","KLRF1|GeneID=51348"]
["chr12",10029153,10029154,1,-1,"  assembly comparison","CLEC12A|GeneID=160364"]
["chr12",10174017,10174021,4,-1,"  assembly comparison","CLEC7A|GeneID=64581"]
["chr12",10203153,10203155,2,-1,"  assembly comparison","OLR1|GeneID=4973"]
["chr12",10203192,10203196,4,-1,"  assembly comparison","OLR1|GeneID=4973"]
["chr12",10234073,10234074,1,-1,"  assembly comparison","C12orf59|GeneID=120939"]
["chr12",10416427,10416431,4,-1,"  assembly comparison","KLRK1|GeneID=22914"]
["chr12",10633386,10641216,2504,-1,"  mate pair","KLRA1|GeneID=10748"]
["chr12",10926388,10926451,63,-1,"  assembly comparison","PRH1|GeneID=5554"]
["chr12",11311720,11311846,126,-1,"  assembly comparison","PRB3|GeneID=5544"]
["chr12",11311876,11311939,63,-1,"  assembly comparison","PRB3|GeneID=5544"]
["chr12",11935660,11935662,2,-1,"  assembly comparison","ETV6|GeneID=2120"]
["chr12",11938617,11938618,1,-1,"  assembly comparison","ETV6|GeneID=2120"]
["chr12",11939490,11939492,2,-1,"  assembly comparison","ETV6|GeneID=2120"]
["chr12",12400235,12400236,1,-1,"  assembly comparison","LOH12CR2|GeneID=503693"]
["chr12",12510282,12510283,1,-1,"  assembly comparison","LOH12CR1|GeneID=118426"]
["chr12",13126175,13126176,1,-1,"  assembly comparison","KIAA1467|GeneID=57613"]
["chr12",14542734,14542738,4,-1,"  assembly comparison","ATF7IP|GeneID=55729"]
["chr12",14547873,14547878,5,-1,"  assembly comparison","FLJ22662|GeneID=79887"]
["chr12",14849318,14849319,1,-1,"  assembly comparison","C12orf69|GeneID=440087"]
["chr12",14867685,14867687,2,-1,"  assembly comparison","C12orf60|GeneID=144608"]
["chr12",16408451,16408452,1,-1,"  assembly comparison","MGST1|GeneID=4257"]
["chr12",16650377,16650378,1,-1,"  assembly comparison","LMO3|GeneID=55885"]
["chr12",18326666,18326669,3,-1,"  assembly comparison","PIK3C2G|GeneID=5288"]
["chr12",19562438,19562439,1,-1,"  assembly comparison","AEBP2|GeneID=121536"]
["chr12",21560235,21560236,1,-1,"  assembly comparison","GOLT1B|GeneID=51026"]
["chr12",22242723,22242725,2,-1,"  assembly comparison","ST8SIA1|GeneID=6489"]
["chr12",22243360,22243361,1,-1,"  assembly comparison","ST8SIA1|GeneID=6489"]
["chr12",24859002,24859003,1,-1,"  assembly comparison","BCAT1|GeneID=586"]
["chr12",25248841,25248843,2,-1,"  assembly comparison","LYRM5|GeneID=144363"]
["chr12",25248895,25248896,1,-1,"  assembly comparison","LYRM5|GeneID=144363"]
["chr12",25249935,25249937,2,-1,"  assembly comparison","KRAS|GeneID=3845"]
["chr12",25250732,25250733,1,-1,"  assembly comparison","KRAS|GeneID=3845"]
["chr12",26276216,26276217,1,-1,"  assembly comparison","SSPN|GeneID=8082"]
["chr12",26277548,26277550,2,-1,"  assembly comparison","SSPN|GeneID=8082"]
["chr12",27016632,27016633,1,-1,"  assembly comparison","TM7SF3|GeneID=51768"]
["chr12",28002586,28002587,1,-1,"  assembly comparison","PTHLH|GeneID=5744"]
["chr12",31326404,31326405,1,-1,"  assembly comparison","FAM60A|GeneID=58516"]
["chr12",31429128,31429129,1,-1,"  assembly comparison","DENND5B|GeneID=160518"]
["chr12",32687661,32687665,4,-1,"  assembly comparison","FGD4|GeneID=121512"]
["chr12",32835426,32835427,1,-1,"  assembly comparison","PKP2|GeneID=5318"]
["chr12",37004436,37004437,1,-1,"  assembly comparison","ALG10B|GeneID=144245"]
["chr12",41127203,41127205,2,-1,"  assembly comparison","PPHLN1|GeneID=51535"]
["chr12",41139335,41139336,1,-1,"  assembly comparison","PRICKLE1|GeneID=144165"]
["chr12",41267333,41274966,4846,-1,"  mate pair","PRICKLE1|GeneID=144165"]
["chr12",44109816,44109821,5,-1,"  assembly comparison","ANO6|GeneID=196527"]
["chr12",44670661,44670662,1,-1,"  assembly comparison","SFRS2IP|GeneID=9169"]
["chr12",44867848,44867850,2,-1,"  assembly comparison","SLC38A1|GeneID=81539"]
["chr12",45039154,45039155,1,-1,"  assembly comparison","SLC38A2|GeneID=54407"]
["chr12",46828731,46828732,1,-1,"  assembly comparison","ASB8|GeneID=140461"]
["chr12",47371388,47371389,1,-1,"  assembly comparison","LOC144438|GeneID=144438"]
["chr12",47618979,47618980,1,-1,"  assembly comparison","ARF3|GeneID=377"]
["chr12",48637946,48637950,4,-1,"  assembly comparison","AQP2|GeneID=359"]
["chr12",48809868,48809872,4,-1,"  assembly comparison","LASS5|GeneID=91012"]
["chr12",49611156,49611158,2,-1,"  assembly comparison","METTL7A|GeneID=25840"]
["chr12",50033431,50033434,3,-1,"  assembly comparison","GALNT6|GeneID=11226"]
["chr12",50033974,50033975,1,-1,"  assembly comparison","GALNT6|GeneID=11226"]
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["chr12",51243937,51248609,3278,-1,"  mate pair","KRT74|GeneID=121391"]
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["chr12",52670200,52670202,2,-1,"  assembly comparison","HOXC10|GeneID=3226"]
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["chr12",55276003,55276004,1,-1,"  assembly comparison","RBMS2|GeneID=5939/BAZ2A|GeneID=11176"]
["chr12",55398198,55398267,69,-1,"  assembly comparison","NACA|GeneID=4666"]
["chr12",55738227,55738228,1,-1,"  assembly comparison","TMEM194A|GeneID=23306"]
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["chr12",62824908,62824909,1,-1,"  assembly comparison","SRGAP1|GeneID=57522"]
["chr12",63182100,63182102,2,-1,"  assembly comparison","TBK1|GeneID=29110"]
["chr12",64504810,64504816,6,-1,"  assembly comparison","HMGA2|GeneID=8091"]
["chr12",64817887,64817890,3,-1,"  assembly comparison","TMBIM4|GeneID=51643"]
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["chr12",67445698,67445700,2,-1,"  assembly comparison","SLC35E3|GeneID=55508"]
["chr12",67952942,67952944,2,-1,"  assembly comparison","CPSF6|GeneID=11052"]
["chr12",69107997,69110858,2683,-1,"  mate pair","KCNMB4|GeneID=27345"]
["chr12",69198483,69198484,1,-1,"  assembly comparison","PTPRB|GeneID=5787"]
["chr12",70383253,70383273,20,-1,"  assembly comparison","TMEM19|GeneID=55266"]
["chr12",73219367,73219371,4,-1,"  assembly comparison","LOC552889|GeneID=552889"]
["chr12",73219611,73219615,4,-1,"  assembly comparison","LOC552889|GeneID=552889"]
["chr12",73220131,73220132,1,-1,"  assembly comparison","LOC552889|GeneID=552889"]
["chr12",73220635,73220636,1,-1,"  assembly comparison","LOC552889|GeneID=552889"]
["chr12",73221219,73221220,1,-1,"  assembly comparison","LOC552889|GeneID=552889"]
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["chr12",74180541,74180545,4,-1,"  assembly comparison","GLIPR1|GeneID=11010"]
["chr12",74709840,74709841,1,-1,"  assembly comparison","PHLDA1|GeneID=22822"]
["chr12",74711218,74711221,3,-1,"  assembly comparison","PHLDA1|GeneID=22822"]
["chr12",75271227,75271228,1,-1,"  assembly comparison","OSBPL8|GeneID=114882"]
["chr12",78367867,78367869,2,-1,"  assembly comparison","SYT1|GeneID=6857"]
["chr12",78692557,78692558,1,-1,"  assembly comparison","PPP1R12A|GeneID=4659"]
["chr12",78693639,78693640,1,-1,"  assembly comparison","PPP1R12A|GeneID=4659"]
["chr12",80173431,80173435,4,-1,"  assembly comparison","ACSS3|GeneID=79611"]
["chr12",81604907,81605362,456,-1,"  Agilent 24M","TMTC2|GeneID=160335"]
["chr12",91348030,91348033,3,-1,"  assembly comparison","CLLU1|GeneID=574028"]
["chr12",92320937,92320938,1,-1,"  assembly comparison","NUDT4|GeneID=11163"]
["chr12",93997874,93997875,1,-1,"  assembly comparison","FGD6|GeneID=55785"]
["chr12",97651828,97651829,1,-1,"  assembly comparison","APAF1|GeneID=317"]
["chr12",99170273,99170274,1,-1,"  assembly comparison","DEPDC4|GeneID=120863"]
["chr12",99313971,99316413,3234,-1,"  mate pair","SLC17A8|GeneID=246213"]
["chr12",99339580,99339589,9,-1,"  assembly comparison","SLC17A8|GeneID=246213"]
["chr12",101055131,101055132,1,-1,"  assembly comparison","C12orf48|GeneID=55010"]
["chr12",101318052,101318053,1,-1,"  assembly comparison","IGF1|GeneID=3479"]
["chr12",101877347,101877348,1,-1,"  assembly comparison","ASCL1|GeneID=429"]
["chr12",101878324,101878325,1,-1,"  assembly comparison","ASCL1|GeneID=429"]
["chr12",102666188,102670639,4410,-1,"  mate pair","STAB2|GeneID=55576"]
["chr12",103983907,103991733,3872,-1,"  mate pair","ALDH1L2|GeneID=160428"]
["chr12",104981604,104981605,1,-1,"  assembly comparison","NUAK1|GeneID=9891"]
["chr12",105155920,105155921,1,-1,"  assembly comparison","CKAP4|GeneID=10970"]
["chr12",105156583,105156584,1,-1,"  assembly comparison","CKAP4|GeneID=10970"]
["chr12",106651297,106651300,3,-1,"  assembly comparison","PRDM4|GeneID=11108"]
["chr12",107437510,107437511,1,-1,"  assembly comparison","FICD|GeneID=11153"]
["chr12",107840673,107841652,980,-1,"  Agilent 24M","SVOP|GeneID=55530"]
["chr12",108370317,108370319,2,-1,"  assembly comparison","MYO1H|GeneID=283446"]
["chr12",108372544,108372547,3,-1,"  assembly comparison","KCTD10|GeneID=83892"]
["chr12",108477660,108477661,1,-1,"  assembly comparison","MMAB|GeneID=326625"]
["chr12",108478835,108478837,2,-1,"  assembly comparison","MMAB|GeneID=326625"]
["chr12",108774051,108774052,1,-1,"  assembly comparison","GLTP|GeneID=51228"]
["chr12",109288845,109298754,3042,-1,"  mate pair","ANAPC7|GeneID=51434"]
["chr12",110521161,110521164,3,-1,"  assembly comparison","ATXN2|GeneID=6311"]
["chr12",110813024,110824219,4614,-1,"  mate pair","MAPKAPK5|GeneID=8550"]
["chr12",111088312,111095131,5068,-1,"  mate pair","C12orf51|GeneID=283450"]
["chr12",111714056,111714058,2,-1,"  assembly comparison","RPH3A|GeneID=22895"]
["chr12",111894561,111894562,1,-1,"  assembly comparison","OAS3|GeneID=4940"]
["chr12",111895091,111895101,10,-1,"  assembly comparison","OAS3|GeneID=4940"]
["chr12",111931586,111931587,1,-1,"  assembly comparison","OAS2|GeneID=4939"]
["chr12",111933246,111933247,1,-1,"  assembly comparison","OAS2|GeneID=4939"]
["chr12",111933280,111933281,1,-1,"  assembly comparison","OAS2|GeneID=4939"]
["chr12",112019732,112019733,1,-1,"  assembly comparison","DTX1|GeneID=1840"]
["chr12",112082977,112096753,4842,-1,"  mate pair","DDX54|GeneID=79039"]
["chr12",112877354,112877357,3,-1,"  assembly comparison","RBM19|GeneID=9904"]
["chr12",113276343,113276344,1,-1,"  assembly comparison","TBX5|GeneID=6910"]
["chr12",113605990,113605991,1,-1,"  assembly comparison","TBX3|GeneID=6926"]
["chr12",116377067,116377068,1,-1,"  assembly comparison","KSR2|GeneID=283455"]
["chr12",116377222,116377223,2,-1,"  assembly comparison","KSR2|GeneID=283455"]
["chr12",116380592,116380593,1,-1,"  assembly comparison","KSR2|GeneID=283455"]
["chr12",116986625,116986626,1,-1,"  assembly comparison","FLJ20674|GeneID=54621"]
["chr12",116990733,116990736,3,-1,"  assembly comparison","FLJ20674|GeneID=54621"]
["chr12",118563691,118563692,1,-1,"  assembly comparison","LOC387890|GeneID=387890"]
["chr12",118610000,118610001,1,-1,"  assembly comparison","CIT|GeneID=11113"]
["chr12",119264836,119264837,1,-1,"  assembly comparison","MSI1|GeneID=4440"]
["chr12",119366647,119366650,3,-1,"  assembly comparison","TRIAP1|GeneID=51499"]
["chr12",120549167,120549173,6,-1,"  assembly comparison","ORAI1|GeneID=84876"]
["chr12",121752460,121752462,2,-1,"  assembly comparison","NIACR1|GeneID=338442"]
["chr12",121820359,121820361,2,-1,"  assembly comparison","DENR|GeneID=8562"]
["chr12",121912947,121912951,4,-1,"  assembly comparison","HIP1R|GeneID=9026"]
["chr12",121916107,121916111,4,-1,"  assembly comparison","VPS37B|GeneID=79720"]
["chr12",122635088,122635091,3,-1,"  assembly comparison","TMED2|GeneID=10959"]
["chr12",122671096,122671128,32,-1,"  assembly comparison","DDX55|GeneID=57696"]
["chr12",123395179,123395180,1,-1,"  assembly comparison","NCOR2|GeneID=9612"]
["chr12",123962537,123962993,456,-1,"  assembly comparison","UBC|GeneID=7316"]
["chr12",124707834,124707836,2,-1,"  assembly comparison","TMEM132B|GeneID=114795"]
["chr12",127844246,127844247,1,-1,"  assembly comparison","SLC15A4|GeneID=121260"]
["chr12",127864751,127864771,20,-1,"  assembly comparison","MGC16384|GeneID=114130"]
["chr12",128750648,128750649,1,-1,"  assembly comparison","TMEM132D|GeneID=121256"]
["chr12",129086462,129086465,3,-1,"  assembly comparison","LOC100190940|GeneID=100190940"]
["chr12",130935419,130949407,5358,-1,"  mate pair","ULK1|GeneID=8408"]
["chr12",131197610,131211865,4882,-1,"  mate pair","NOC4L|GeneID=79050"]
["chr12",131671509,131671511,2,-1,"  assembly comparison","FBRSL1|GeneID=57666"]
["chr12",131856908,131856909,1,-1,"  assembly comparison","GOLGA3|GeneID=2802"]
["chr12",131857596,131857597,1,-1,"  assembly comparison","GOLGA3|GeneID=2802"]
["chr12",131863214,131863293,79,-1,"  assembly comparison","GOLGA3|GeneID=2802"]
["chr15",18816444,19438545,622102,-1,"  Affymetrix 6.0","LOC727832|GeneID=727832/CXADRP2|GeneID=646243/POTEB|GeneID=339010"]
["chr15",19336063,19336173,111,-1,"  split read","POTEB|GeneID=339010"]
["chr15",19466132,19800466,328370,-1,"  mate pair","LOC727924|GeneID=727924"]
["chr15",20599834,20599836,2,-1,"  assembly comparison","NIPA1|GeneID=123606"]
["chr15",20740117,20740119,2,-1,"  assembly comparison","WHDC1L1|GeneID=339005"]
["chr15",20853105,20931136,78032,-1,"  NimbleGen 42M","HERC2P2|GeneID=400322"]
["chr15",21962638,21962639,1,-1,"  assembly comparison","PWRN2|GeneID=791115"]
["chr15",22364324,22364326,2,-1,"  assembly comparison","PWRN1|GeneID=791114"]
["chr15",22366330,22366331,1,-1,"  assembly comparison","PWRN1|GeneID=791114"]
["chr15",22475845,22475850,5,-1,"  assembly comparison","C15orf2|GeneID=23742"]
["chr15",22476861,22476867,6,-1,"  assembly comparison","C15orf2|GeneID=23742"]
["chr15",22478049,22478062,13,-1,"  assembly comparison","C15orf2|GeneID=23742"]
["chr15",22913365,22913367,2,-1,"  assembly comparison","IPW|GeneID=3653"]
["chr15",22916265,22916269,4,-1,"  assembly comparison","IPW|GeneID=3653"]
["chr15",22971183,22981886,10704,-1,"  split read","SNORD115-3|GeneID=100033440/SNORD115-4|GeneID=100033441/SNORD115-5|GeneID=100033442/SNORD115-12|GeneID=100033449/SNORD115-9|GeneID=100033446/SNORD115-10|GeneID=100033447/SNORD115-6|GeneID=100033443/SNORD115-7|GeneID=100033444/SNORD115-8|GeneID=100033445"]
["chr15",23156327,23162501,3764,-1,"  mate pair","UBE3A|GeneID=7337"]
["chr15",29019150,29019155,5,-1,"  assembly comparison","MTMR10|GeneID=54893"]
["chr15",29019776,29019781,5,-1,"  assembly comparison","MTMR10|GeneID=54893"]
["chr15",29020649,29020653,4,-1,"  assembly comparison","MTMR10|GeneID=54893"]
["chr15",31945134,31945138,4,-1,"  assembly comparison","RYR3|GeneID=6263"]
["chr15",32221769,32221770,1,-1,"  assembly comparison","C15orf29|GeneID=79768"]
["chr15",32868986,32868987,1,-1,"  assembly comparison","ACTC1|GeneID=70"]
["chr15",34889551,34889553,2,-1,"  assembly comparison","C15orf41|GeneID=84529"]
["chr15",34970576,34970577,1,-1,"  assembly comparison","MEIS2|GeneID=4212"]
["chr15",34970908,34970909,1,-1,"  assembly comparison","MEIS2|GeneID=4212"]
["chr15",37332624,37332625,1,-1,"  assembly comparison","C15orf54|GeneID=400360"]
["chr15",37676793,37676794,1,-1,"  assembly comparison","THBS1|GeneID=7057"]
["chr15",38633396,38633412,18,-1,"  split read","C15orf57|GeneID=90416"]
["chr15",38633396,38633431,36,-1,"  split read","C15orf57|GeneID=90416"]
["chr15",38633440,38633458,18,-1,"  assembly comparison","C15orf57|GeneID=90416"]
["chr15",39018439,39018440,1,-1,"  assembly comparison","DLL4|GeneID=54567"]
["chr15",39059635,39059636,1,-1,"  assembly comparison","INO80|GeneID=54617"]
["chr15",39560745,39560746,1,-1,"  assembly comparison","RTF1|GeneID=23168"]
["chr15",39803593,39813449,2744,-1,"  mate pair","MGA|GeneID=23269"]
["chr15",39900848,39905002,4014,-1,"  mate pair","MAPKBP1|GeneID=23005"]
["chr15",40333041,40339890,2644,-1,"  mate pair","TMEM87A|GeneID=25963"]
["chr15",40647520,40647521,1,-1,"  assembly comparison","CEP27|GeneID=55142"]
["chr15",41718926,41718927,1,-1,"  assembly comparison","CATSPER2|GeneID=117155"]
["chr15",41946132,41946133,1,-1,"  assembly comparison","WDR76|GeneID=79968"]
["chr15",41955316,41955317,1,-1,"  assembly comparison","hCG_1789710|GeneID=728758"]
["chr15",43199576,43212091,4270,-1,"  mate pair","DUOXA1|GeneID=90527/DUOX1|GeneID=53905"]
["chr15",47408277,47408278,1,-1,"  assembly comparison","GALK2|GeneID=2585"]
["chr15",47939435,47939437,2,-1,"  assembly comparison","ATP8B4|GeneID=79895"]
["chr15",48578886,48578887,1,-1,"  assembly comparison","USP8|GeneID=9101"]
["chr15",48579096,48579097,1,-1,"  assembly comparison","USP8|GeneID=9101"]
["chr15",48787029,48787030,1,-1,"  assembly comparison","SPPL2A|GeneID=84888"]
["chr15",50145237,50145242,5,-1,"  assembly comparison","MAPK6|GeneID=5597"]
["chr15",50201113,50201114,1,-1,"  assembly comparison","GNB5|GeneID=10681"]
["chr15",50272821,50272824,3,-1,"  assembly comparison","MYO5C|GeneID=55930"]
["chr15",50627984,50627985,1,-1,"  assembly comparison","ARPP-19|GeneID=10776"]
["chr15",51594662,51594663,1,-1,"  assembly comparison","WDR72|GeneID=256764"]
["chr15",53907277,53907282,5,-1,"  assembly comparison","NEDD4|GeneID=4734"]
["chr15",57717933,57717936,3,-1,"  assembly comparison","GTF2A2|GeneID=2958"]
["chr15",58500448,58500450,2,-1,"  assembly comparison","NARG2|GeneID=79664"]
["chr15",58500705,58500706,1,-1,"  assembly comparison","NARG2|GeneID=79664"]
["chr15",58573467,58573479,12,-1,"  assembly comparison","RORA|GeneID=6095"]
["chr15",58574075,58574076,1,-1,"  assembly comparison","RORA|GeneID=6095"]
["chr15",59933381,59933382,1,-1,"  assembly comparison","VPS13C|GeneID=54832"]
["chr15",60044215,60044216,1,-1,"  assembly comparison","VPS13C|GeneID=54832"]
["chr15",61150454,61150459,5,-1,"  assembly comparison","TPM1|GeneID=7168"]
["chr15",62234781,62234782,1,-1,"  assembly comparison","SNX22|GeneID=79856"]
["chr15",63036857,63036860,3,-1,"  assembly comparison","ANKDD1A|GeneID=348094"]
["chr15",63460975,63460976,1,-1,"  assembly comparison","IGDCC4|GeneID=57722"]
["chr15",63704673,63704674,1,-1,"  assembly comparison","SLC24A1|GeneID=9187"]
["chr15",65272990,65272993,3,-1,"  assembly comparison","SMAD3|GeneID=4088"]
["chr15",65622113,65622134,21,-1,"  assembly comparison","MAP2K5|GeneID=5607"]
["chr15",66286531,66286532,1,-1,"  assembly comparison","CLN6|GeneID=54982"]
["chr15",66287387,66287391,4,-1,"  assembly comparison","CLN6|GeneID=54982"]
["chr15",66392156,66401473,4006,-1,"  mate pair","ITGA11|GeneID=22801"]
["chr15",68128926,68128927,1,-1,"  assembly comparison","TLE3|GeneID=7090"]
["chr15",68177217,68177218,1,-1,"  assembly comparison","TLE3|GeneID=7090"]
["chr15",68734662,68734664,2,-1,"  assembly comparison","UACA|GeneID=55075"]
["chr15",68735173,68735174,1,-1,"  assembly comparison","UACA|GeneID=55075"]
["chr15",69063541,69063544,3,-1,"  assembly comparison","LRRC49|GeneID=54839"]
["chr15",69892986,69892987,1,-1,"  assembly comparison","NR2E3|GeneID=10002"]
["chr15",69897443,69897446,3,-1,"  assembly comparison","NR2E3|GeneID=10002"]
["chr15",69905444,69905449,5,-1,"  assembly comparison","MYO9A|GeneID=4649"]
["chr15",70239746,70239747,1,-1,"  assembly comparison","GRAMD2|GeneID=196996"]
["chr15",71401172,71401173,1,-1,"  assembly comparison","HCN4|GeneID=10021"]
["chr15",71401762,71401764,2,-1,"  assembly comparison","HCN4|GeneID=10021"]
["chr15",72282609,72282611,2,-1,"  assembly comparison","STRA6|GeneID=64220"]
["chr15",72323456,72323459,3,-1,"  assembly comparison","CCDC33|GeneID=80125"]
["chr15",72835528,72835529,1,-1,"  assembly comparison","CYP1A2|GeneID=1544"]
["chr15",72966353,72974998,4754,-1,"  mate pair","MPI|GeneID=4351"]
["chr15",73286237,73286238,1,-1,"  assembly comparison","C15orf39|GeneID=56905"]
["chr15",73450374,73450375,1,-1,"  assembly comparison","SIN3A|GeneID=25942"]
["chr15",75192094,75192102,8,-1,"  assembly comparison","SGK269|GeneID=79834"]
["chr15",76075831,76075832,1,-1,"  assembly comparison","TBC1D2B|GeneID=23102"]
["chr15",76184406,76184407,1,-1,"  assembly comparison","CIB2|GeneID=10518"]
["chr15",76344148,76344149,1,-1,"  assembly comparison","DNAJA4|GeneID=55466"]
["chr15",76577799,76577800,1,-1,"  assembly comparison","IREB2|GeneID=3658"]
["chr15",76579953,76579954,1,-1,"  assembly comparison","IREB2|GeneID=3658"]
["chr15",76675847,76675848,1,-1,"  assembly comparison","CHRNA3|GeneID=1136"]
["chr15",76700141,76700144,3,-1,"  assembly comparison","CHRNA3|GeneID=1136"]
["chr15",77078657,77087232,5191,-1,"  mate pair","RASGRF1|GeneID=5923"]
["chr15",81464492,81464493,1,-1,"  assembly comparison","C15orf40|GeneID=123207"]
["chr15",83002687,83002688,1,-1,"  assembly comparison","NMB|GeneID=4828"]
["chr15",83149965,83149969,4,-1,"  assembly comparison","ZNF592|GeneID=9640"]
["chr15",87199999,87200113,114,-1,"  assembly comparison","ACAN|GeneID=176"]
["chr15",87200134,87200191,57,-1,"  assembly comparison","ACAN|GeneID=176"]
["chr15",87543534,87543535,1,-1,"  assembly comparison","ABHD2|GeneID=11057"]
["chr15",88121138,88121149,12,-1,"  split read","MESP2|GeneID=145873"]
["chr15",88245130,88245131,1,-1,"  assembly comparison","C15orf38|GeneID=348110"]
["chr15",88344647,88351102,4223,-1,"  mate pair","ZNF710|GeneID=374655"]
["chr15",88610273,88610274,1,-1,"  assembly comparison","NGRN|GeneID=51335"]
["chr15",90962997,90962999,2,-1,"  assembly comparison","FAM174B|GeneID=400451"]
["chr15",90999690,90999696,6,-1,"  assembly comparison","FAM174B|GeneID=400451"]
["chr15",91369470,91369473,3,-1,"  assembly comparison","CHD2|GeneID=1106"]
["chr15",96087680,96087681,1,-1,"  assembly comparison","LOC91948|GeneID=91948"]
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["chr15",97318610,97318612,2,-1,"  assembly comparison","IGF1R|GeneID=3480"]
["chr15",97319461,97319462,1,-1,"  assembly comparison","IGF1R|GeneID=3480"]
["chr15",97320619,97320620,1,-1,"  assembly comparison","IGF1R|GeneID=3480"]
["chr15",97320734,97320736,2,-1,"  assembly comparison","IGF1R|GeneID=3480"]
["chr15",97323982,97323983,1,-1,"  assembly comparison","IGF1R|GeneID=3480"]
["chr15",98071073,98071074,1,-1,"  assembly comparison","MEF2A|GeneID=4205"]
["chr15",98071923,98071928,5,-1,"  assembly comparison","MEF2A|GeneID=4205"]
["chr15",98150264,98150265,1,-1,"  assembly comparison","C15orf51|GeneID=196968"]
["chr15",98330900,98330904,4,-1,"  assembly comparison","ADAMTS17|GeneID=170691"]
["chr15",98331112,98331118,6,-1,"  assembly comparison","ADAMTS17|GeneID=170691"]
["chr15",99741603,99741604,1,-1,"  assembly comparison","PCSK6|GeneID=5046"]
["chr15",100035399,100044085,2536,-1,"  mate pair","TARSL2|GeneID=123283"]
["chrX",2834195,2834196,1,-1,"  assembly comparison","ARSD|GeneID=414"]
["chrX",2842470,2842471,1,-1,"  assembly comparison","ARSD|GeneID=414"]
["chrX",3534738,3534740,2,-1,"  assembly comparison","PRKX|GeneID=5613"]
["chrX",3535939,3535940,1,-1,"  assembly comparison","PRKX|GeneID=5613"]
["chrX",6977889,6977893,4,-1,"  assembly comparison","HDHD1A|GeneID=8226"]
["chrX",14658934,14658947,14,-1,"  split read","GLRA2|GeneID=2742"]
["chrX",14658979,14658993,14,-1,"  assembly comparison","GLRA2|GeneID=2742"]
["chrX",16770204,16770205,1,-1,"  assembly comparison","CXorf15|GeneID=55787"]
["chrX",37964938,37964941,3,-1,"  assembly comparison","SRPX|GeneID=8406"]
["chrX",38305728,38305731,3,-1,"  assembly comparison","TSPAN7|GeneID=7102"]
["chrX",46804600,46804601,1,-1,"  assembly comparison","PHF16|GeneID=9767"]
["chrX",48646133,48646137,4,-1,"  assembly comparison","SLC35A2|GeneID=7355"]
["chrX",48769784,48776350,3374,-1,"  mate pair","TFE3|GeneID=7030"]
["chrX",48813362,48813364,2,-1,"  assembly comparison","CCDC120|GeneID=90060"]
["chrX",50351465,50351473,8,-1,"  assembly comparison","SHROOM4|GeneID=57477"]
["chrX",51256054,51256068,14,-1,"  assembly comparison","NUDT11|GeneID=55190"]
["chrX",52249115,52262084,12970,-1,"  NimbleGen 42M","XAGE1D|GeneID=9503/XAGE1B|GeneID=653220/XAGE1C|GeneID=653048/XAGE1A|GeneID=653219/XAGE1E|GeneID=653067"]
["chrX",52270822,52282733,11912,-1,"  NimbleGen 42M","XAGE1C|GeneID=653048/XAGE1E|GeneID=653067"]
["chrX",52543707,52568599,24893,-1,"  NimbleGen 42M","XAGE1E|GeneID=653067/XAGE1B|GeneID=653220/XAGE1A|GeneID=653219/XAGE1D|GeneID=9503"]
["chrX",57034089,57034090,1,-1,"  assembly comparison","SPIN3|GeneID=169981"]
["chrX",66681907,66681952,45,-1,"  assembly comparison","AR|GeneID=367"]
["chrX",84229755,84229787,32,-1,"  assembly comparison","APOOL|GeneID=139322"]
["chrX",84229812,84229878,66,-1,"  assembly comparison","APOOL|GeneID=139322"]
["chrX",84230479,84230528,49,-1,"  assembly comparison","APOOL|GeneID=139322"]
["chrX",84250033,84250048,15,-1,"  assembly comparison","SATL1|GeneID=340562"]
["chrX",91763229,91763232,4,-1,"  assembly comparison","PCDH11X|GeneID=27328"]
["chrX",99551385,99551394,9,-1,"  assembly comparison","PCDH19|GeneID=57526"]
["chrX",99985013,99985016,3,-1,"  assembly comparison","NOX1|GeneID=27035"]
["chrX",100151202,100151203,1,-1,"  assembly comparison","TRMT2B|GeneID=79979"]
["chrX",101024941,101024942,1,-1,"  assembly comparison","ZMAT1|GeneID=84460"]
["chrX",101028433,101028434,1,-1,"  assembly comparison","ZMAT1|GeneID=84460"]
["chrX",101893552,101893553,1,-1,"  assembly comparison","BHLHB9|GeneID=80823"]
["chrX",102817339,102817340,1,-1,"  assembly comparison","MORF4L2|GeneID=9643"]
["chrX",103119303,103119321,18,-1,"  assembly comparison","H2BFXP|GeneID=767811"]
["chrX",104350933,104350934,1,-1,"  assembly comparison","TEX13A|GeneID=56157"]
["chrX",104350939,104350940,1,-1,"  assembly comparison","TEX13A|GeneID=56157"]
["chrX",109805582,109805588,6,-1,"  assembly comparison","CHRDL1|GeneID=91851"]
["chrX",109805618,109805622,4,-1,"  assembly comparison","CHRDL1|GeneID=91851"]
["chrX",118099278,118099280,2,-1,"  assembly comparison","KIAA1210|GeneID=57481"]
["chrX",118635090,118635107,18,-1,"  split read","SEPT6|GeneID=23157"]
["chrX",118635122,118635140,18,-1,"  assembly comparison","SEPT6|GeneID=23157"]
["chrX",119455308,119455309,1,-1,"  assembly comparison","LAMP2|GeneID=3920"]
["chrX",119630567,119630569,2,-1,"  assembly comparison","MCTS1|GeneID=28985"]
["chrX",119630590,119630592,2,-1,"  assembly comparison","MCTS1|GeneID=28985"]
["chrX",119638365,119638367,2,-1,"  assembly comparison","MCTS1|GeneID=28985"]
["chrX",123062428,123062429,1,-1,"  assembly comparison","STAG2|GeneID=10735"]
["chrX",125782598,125782599,1,-1,"  assembly comparison","CXorf64|GeneID=100130613"]
["chrX",134780239,134797489,17250,-1,"  assembly comparison","RP13-36C9.6|GeneID=441521/CT45-6|GeneID=541465"]
["chrX",135302113,135302116,3,-1,"  assembly comparison","GPR112|GeneID=139378"]
["chrX",137621091,137621092,1,-1,"  assembly comparison","FGF13|GeneID=2258"]
["chrX",139909896,139927299,17404,-1,"  NimbleGen 42M","SPANXB1|GeneID=728695/SPANXB2|GeneID=100133171/SPANXF1|GeneID=171490"]
["chrX",142543602,142543609,7,-1,"  assembly comparison","SLITRK4|GeneID=139065"]
["chrX",142795681,142795686,5,-1,"  assembly comparison","UBE2NL|GeneID=389898"]
["chrX",144714398,144714401,3,-1,"  assembly comparison","SLITRK2|GeneID=84631"]
["chrX",149683785,149683786,1,-1,"  assembly comparison","MTMR1|GeneID=8776"]
["chrX",150100217,150100229,12,-1,"  assembly comparison","GPR50|GeneID=9248"]
["chrX",150831426,150841605,2566,-1,"  mate pair","MAGEA4|GeneID=4103"]
["chrX",151034092,151034097,5,-1,"  assembly comparison","MAGEA5|GeneID=4104"]
["chrX",152721873,152721876,3,-1,"  assembly comparison","PDZD4|GeneID=57595"]
["chrX",153293254,153293255,1,-1,"  assembly comparison","TAZ|GeneID=6901"]
["chr4",423973,423974,1,-1,"  assembly comparison","ZNF721|GeneID=170960"]
["chr4",608112,618837,5372,-1,"  mate pair","PDE6B|GeneID=5158"]
["chr4",752272,752274,2,-1,"  assembly comparison","PCGF3|GeneID=10336"]
["chr4",943193,943194,1,-1,"  assembly comparison","DGKQ|GeneID=1609"]
["chr4",1181424,1181425,1,-1,"  assembly comparison","LOC100130872|GeneID=100130872"]
["chr4",1181835,1181836,1,-1,"  assembly comparison","LOC100130872|GeneID=100130872"]
["chr4",1375494,1375569,75,-1,"  assembly comparison","CRIPAK|GeneID=285464"]
["chr4",1778942,1778944,2,-1,"  assembly comparison","FGFR3|GeneID=2261"]
["chr4",1783908,1783909,1,-1,"  assembly comparison","LETM1|GeneID=3954"]
["chr4",2873935,2884399,5078,-1,"  mate pair","ADD1|GeneID=118"]
["chr4",3046457,3046460,3,-1,"  assembly comparison","HTT|GeneID=3064"]
["chr4",3046464,3046466,3,-1,"  assembly comparison","HTT|GeneID=3064"]
["chr4",4439112,4439130,18,-1,"  assembly comparison","D4S234E|GeneID=27065"]
["chr4",4439609,4439623,14,-1,"  assembly comparison","D4S234E|GeneID=27065"]
["chr4",4916180,4916187,7,-1,"  assembly comparison","MSX1|GeneID=4487"]
["chr4",4916215,4916216,1,-1,"  assembly comparison","MSX1|GeneID=4487"]
["chr4",5864412,5864470,58,-1,"  assembly comparison","EVC|GeneID=2121"]
["chr4",5865509,5865510,1,-1,"  assembly comparison","EVC|GeneID=2121"]
["chr4",6328452,6344147,6886,-1,"  mate pair","WFS1|GeneID=7466"]
["chr4",6374303,6374305,2,-1,"  assembly comparison","PPP2R2C|GeneID=5522"]
["chr4",6374730,6374750,20,-1,"  assembly comparison","PPP2R2C|GeneID=5522"]
["chr4",6760588,6760589,1,-1,"  assembly comparison","MRFAP1L1|GeneID=114932"]
["chr4",6769996,6770000,4,-1,"  assembly comparison","CNO|GeneID=55330"]
["chr4",6935274,6935276,2,-1,"  assembly comparison","KIAA0232|GeneID=9778"]
["chr4",7110528,7110529,1,-1,"  assembly comparison","TADA2B|GeneID=93624"]
["chr4",7813785,7813789,4,-1,"  assembly comparison","AFAP1|GeneID=60312"]
["chr4",8438181,8448883,6838,-1,"  mate pair","ACOX3|GeneID=8310"]
["chr4",9701589,9709744,4186,-1,"  mate pair","WDR1|GeneID=9948"]
["chr4",10052053,10052056,3,-1,"  assembly comparison","ZNF518B|GeneID=85460"]
["chr4",12946137,12946138,1,-1,"  assembly comparison","HSP90AB2P|GeneID=391634"]
["chr4",17253990,17259221,4268,-1,"  mate pair","FAM184B|GeneID=27146"]
["chr4",17413361,17413362,1,-1,"  assembly comparison","C4orf30|GeneID=54876"]
["chr4",21460846,21460847,1,-1,"  assembly comparison","NCRNA00099|GeneID=359822"]
["chr4",21462716,21462722,6,-1,"  assembly comparison","NCRNA00099|GeneID=359822"]
["chr4",21462928,21462928,1,-1,"  assembly comparison","NCRNA00099|GeneID=359822"]
["chr4",23406047,23406051,4,-1,"  assembly comparison","PPARGC1A|GeneID=10891"]
["chr4",24612434,24612435,1,-1,"  assembly comparison","LGI2|GeneID=55203"]
["chr4",24612542,24612543,1,-1,"  assembly comparison","LGI2|GeneID=55203"]
["chr4",25289424,25289426,2,-1,"  assembly comparison","SLC34A2|GeneID=10568"]
["chr4",26634201,26634202,1,-1,"  assembly comparison","STIM2|GeneID=57620"]
["chr4",37270244,37270245,1,-1,"  assembly comparison","C4orf19|GeneID=55286"]
["chr4",37290193,37290194,1,-1,"  assembly comparison","RELL1|GeneID=768211"]
["chr4",37290217,37290218,1,-1,"  assembly comparison","RELL1|GeneID=768211"]
["chr4",37290355,37290355,1,-1,"  assembly comparison","RELL1|GeneID=768211"]
["chr4",37290364,37290365,1,-1,"  assembly comparison","RELL1|GeneID=768211"]
["chr4",37816804,37816805,1,-1,"  assembly comparison","TBC1D1|GeneID=23216"]
["chr4",39178042,39178043,1,-1,"  assembly comparison","UGDH|GeneID=7358"]
["chr4",39178132,39178135,3,-1,"  assembly comparison","UGDH|GeneID=7358"]
["chr4",39459346,39459347,1,-1,"  assembly comparison","UBE2K|GeneID=3093"]
["chr4",40120412,40120446,35,-1,"  assembly comparison","RBM47|GeneID=54502"]
["chr4",40120460,40120462,2,-1,"  assembly comparison","RBM47|GeneID=54502"]
["chr4",40120482,40120483,1,-1,"  assembly comparison","RBM47|GeneID=54502"]
["chr4",40120485,40120489,4,-1,"  assembly comparison","RBM47|GeneID=54502"]
["chr4",40121764,40121765,1,-1,"  assembly comparison","RBM47|GeneID=54502"]
["chr4",40508424,40508427,3,-1,"  assembly comparison","APBB2|GeneID=323"]
["chr4",40509401,40509404,3,-1,"  assembly comparison","APBB2|GeneID=323"]
["chr4",41683145,41683147,2,-1,"  assembly comparison","WDR21B|GeneID=285429"]
["chr4",46086576,46086590,14,-1,"  assembly comparison","GABRA2|GeneID=2555"]
["chr4",46620117,46620118,1,-1,"  assembly comparison","GABRA4|GeneID=2557"]
["chr4",46622527,46622533,6,-1,"  assembly comparison","GABRA4|GeneID=2557"]
["chr4",47834067,47834071,4,-1,"  assembly comparison","TEC|GeneID=7006"]
["chr4",48120058,48120059,1,-1,"  assembly comparison","SLAIN2|GeneID=57606"]
["chr4",52657694,52657695,1,-1,"  assembly comparison","SPATA18|GeneID=132671"]
["chr4",54547477,54547502,25,-1,"  assembly comparison","LOC402176|GeneID=402176"]
["chr4",54570888,54570889,1,-1,"  assembly comparison","CHIC2|GeneID=26511"]
["chr4",54857304,54857307,3,-1,"  assembly comparison","PDGFRA|GeneID=5156"]
["chr4",55931395,55931397,2,-1,"  assembly comparison","SRD5A3|GeneID=79644"]
["chr4",55986377,55986379,2,-1,"  assembly comparison","TMEM165|GeneID=55858"]
["chr4",56593381,56593382,1,-1,"  assembly comparison","CEP135|GeneID=9662"]
["chr4",56593770,56593776,6,-1,"  assembly comparison","CEP135|GeneID=9662"]
["chr4",56891126,56891127,1,-1,"  assembly comparison","KIAA1211|GeneID=57482"]
["chr4",64828077,64828078,1,-1,"  assembly comparison","SRD5A2L2|GeneID=253017"]
["chr4",68020759,68020761,2,-1,"  assembly comparison","CENPC1|GeneID=1060"]
["chr4",68166345,68166346,1,-1,"  assembly comparison","UBA6|GeneID=55236"]
["chr4",68304189,68304190,1,-1,"  assembly comparison","GNRHR|GeneID=2798"]
["chr4",68459045,68459046,1,-1,"  assembly comparison","TMPRSS11A|GeneID=339967"]
["chr4",68775718,68775720,2,-1,"  assembly comparison","TMPRSS11B|GeneID=132724"]
["chr4",69054733,69117268,62536,-1,"  NimbleGen 42M","UGT2B17|GeneID=7367"]
["chr4",69829387,69829388,1,-1,"  assembly comparison","UGT2A3|GeneID=79799"]
["chr4",70013143,70013144,1,-1,"  assembly comparison","UGT2B7|GeneID=7364"]
["chr4",70100640,70100641,1,-1,"  assembly comparison","UGT2B11|GeneID=10720"]
["chr4",71064203,71064204,1,-1,"  assembly comparison","C4orf40|GeneID=401137"]
["chr4",71528041,71721022,184150,-1,"  mate pair","ENAM|GeneID=10117"]
["chr4",71900945,71900946,1,-1,"  assembly comparison","GRSF1|GeneID=2926"]
["chr4",72069407,72069408,1,-1,"  assembly comparison","MOBKL1A|GeneID=92597"]
["chr4",72654810,72654839,30,-1,"  split read","SLC4A4|GeneID=8671"]
["chr4",74141354,74141355,1,-1,"  assembly comparison","COX18|GeneID=285521"]
["chr4",74342939,74342950,12,-1,"  split read","ANKRD17|GeneID=26057"]
["chr4",76623528,76623531,3,-1,"  assembly comparison","RCHY1|GeneID=25898"]
["chr4",76624761,76624763,2,-1,"  assembly comparison","RCHY1|GeneID=25898"]
["chr4",76672990,76672991,1,-1,"  assembly comparison","THAP6|GeneID=152815"]
["chr4",77161785,77161786,1,-1,"  assembly comparison","CXCL10|GeneID=3627"]
["chr4",77254931,77254935,4,-1,"  assembly comparison","NUP54|GeneID=53371"]
["chr4",77312788,77321202,4694,-1,"  mate pair","SCARB2|GeneID=950"]
["chr4",78035154,78035155,1,-1,"  assembly comparison","ANKRD56|GeneID=345079"]
["chr4",78178620,78178626,6,-1,"  assembly comparison","SEPT11|GeneID=55752"]
["chr4",78854630,78854653,23,-1,"  assembly comparison","CNOT6L|GeneID=246175"]
["chr4",78856325,78856326,1,-1,"  assembly comparison","CNOT6L|GeneID=246175"]
["chr4",80058410,80058415,5,-1,"  assembly comparison","PAQR3|GeneID=152559"]
["chr4",81002903,81002904,1,-1,"  assembly comparison","GDEP|GeneID=118425"]
["chr4",82196508,82196509,1,-1,"  assembly comparison","BMP3|GeneID=651"]
["chr4",82197398,82197402,4,-1,"  assembly comparison","BMP3|GeneID=651"]
["chr4",83563974,83563993,20,-1,"  split read","HNRPDL|GeneID=9987"]
["chr4",83770899,83770900,1,-1,"  assembly comparison","SCD5|GeneID=79966"]
["chr4",83800177,83800181,4,-1,"  assembly comparison","SCD5|GeneID=79966"]
["chr4",84067341,84067344,3,-1,"  assembly comparison","LIN54|GeneID=132660"]
["chr4",84230722,84230723,1,-1,"  assembly comparison","PLAC8|GeneID=51316"]
["chr4",84230936,84230942,6,-1,"  assembly comparison","PLAC8|GeneID=51316"]
["chr4",84234453,84234463,10,-1,"  assembly comparison","PLAC8|GeneID=51316"]
["chr4",86146806,86146807,1,-1,"  assembly comparison","C4orf12|GeneID=404201"]
["chr4",87141327,87141328,1,-1,"  assembly comparison","ARHGAP24|GeneID=83478"]
["chr4",88280648,88280653,5,-1,"  assembly comparison","AFF1|GeneID=4299"]
["chr4",89402040,89402042,2,-1,"  assembly comparison","PPM1K|GeneID=152926"]
["chr4",95727457,95727458,1,-1,"  assembly comparison","PDLIM5|GeneID=10611"]
["chr4",95805288,95805289,1,-1,"  assembly comparison","PDLIM5|GeneID=10611"]
["chr4",95805672,95805679,7,-1,"  assembly comparison","PDLIM5|GeneID=10611"]
["chr4",95805679,95805680,1,-1,"  assembly comparison","PDLIM5|GeneID=10611"]
["chr4",95805749,95805750,1,-1,"  assembly comparison","PDLIM5|GeneID=10611"]
["chr4",100018756,100018757,1,-1,"  assembly comparison","EIF4E|GeneID=1977"]
["chr4",100021009,100021010,1,-1,"  assembly comparison","EIF4E|GeneID=1977"]
["chr4",100021026,100021027,1,-1,"  assembly comparison","EIF4E|GeneID=1977"]
["chr4",102166028,102166029,1,-1,"  assembly comparison","PPP3CA|GeneID=5530"]
["chr4",104028757,104028758,1,-1,"  assembly comparison","CISD2|GeneID=493856"]
["chr4",106510278,106510283,5,-1,"  assembly comparison","PPA2|GeneID=27068"]
["chr4",106987274,106987275,1,-1,"  assembly comparison","GSTCD|GeneID=79807"]
["chr4",110851680,110851681,1,-1,"  assembly comparison","PLA2G12A|GeneID=81579"]
["chr4",110854937,110854938,1,-1,"  assembly comparison","PLA2G12A|GeneID=81579"]
["chr4",111763460,111763461,1,-1,"  assembly comparison","PITX2|GeneID=5308"]
["chr4",113656628,113656631,3,-1,"  assembly comparison","NEUROG2|GeneID=63973"]
["chr4",114592738,114592741,3,-1,"  assembly comparison","CAMK2D|GeneID=817"]
["chr4",114594676,114594677,1,-1,"  assembly comparison","CAMK2D|GeneID=817"]
["chr4",115739301,115739318,17,-1,"  assembly comparison","UGT8|GeneID=7368"]
["chr4",120167412,120167415,3,-1,"  assembly comparison","SYNPO2|GeneID=171024"]
["chr4",120173456,120173462,6,-1,"  assembly comparison","SYNPO2|GeneID=171024"]
["chr4",120434438,120434439,1,-1,"  assembly comparison","USP53|GeneID=54532"]
["chr4",122272849,122272857,8,-1,"  assembly comparison","TNIP3|GeneID=79931"]
["chr4",122965739,122965740,1,-1,"  assembly comparison","BBS7|GeneID=55212"]
["chr4",124455377,124455378,1,-1,"  assembly comparison","SPATA5|GeneID=166378"]
["chr4",124455800,124455801,1,-1,"  assembly comparison","SPATA5|GeneID=166378"]
["chr4",124459376,124459379,3,-1,"  assembly comparison","SPATA5|GeneID=166378"]
["chr4",124543695,124543698,3,-1,"  assembly comparison","SPRY1|GeneID=10252"]
["chr4",124544150,124544152,2,-1,"  assembly comparison","SPRY1|GeneID=10252"]
["chr4",130013877,130013880,3,-1,"  assembly comparison","PHF17|GeneID=79960"]
["chr4",140614525,140614527,2,-1,"  assembly comparison","RAB33B|GeneID=83452"]
["chr4",140650843,140650859,16,-1,"  assembly comparison","SETD7|GeneID=80854"]
["chr4",140871059,140871062,3,-1,"  assembly comparison","MAML3|GeneID=55534"]
["chr4",141030533,141030545,12,-1,"  assembly comparison","MAML3|GeneID=55534"]
["chr4",144361243,144361244,1,-1,"  assembly comparison","USP38|GeneID=84640"]
["chr4",145251417,145251429,12,-1,"  assembly comparison","GYPA|GeneID=2993"]
["chr4",145281272,145281273,1,-1,"  assembly comparison","GYPA|GeneID=2993"]
["chr4",146275685,146275686,1,-1,"  assembly comparison","OTUD4|GeneID=54726"]
["chr4",146901338,146901339,1,-1,"  assembly comparison","ZNF827|GeneID=152485"]
["chr4",147779907,147779919,12,-1,"  assembly comparison","POU4F2|GeneID=5458"]
["chr4",147782458,147782464,6,-1,"  assembly comparison","POU4F2|GeneID=5458"]
["chr4",148684427,148684428,1,-1,"  assembly comparison","EDNRA|GeneID=1909"]
["chr4",148775340,148775341,1,-1,"  assembly comparison","TMEM184C|GeneID=55751"]
["chr4",149221472,149221473,1,-1,"  assembly comparison","NR3C2|GeneID=4306"]
["chr4",151397290,151397294,4,-1,"  assembly comparison","DCLK2|GeneID=166614"]
["chr4",151405519,151405524,5,-1,"  assembly comparison","LRBA|GeneID=987"]
["chr4",151725083,151725084,1,-1,"  assembly comparison","MAB21L2|GeneID=10586"]
["chr4",152262041,152262045,4,-1,"  assembly comparison","SH3D19|GeneID=152503"]
["chr4",154117583,154117585,2,-1,"  assembly comparison","FHDC1|GeneID=85462"]
["chr4",154119162,154119163,1,-1,"  assembly comparison","FHDC1|GeneID=85462"]
["chr4",154293822,154293825,3,-1,"  assembly comparison","TRIM2|GeneID=23321"]
["chr4",154476718,154476720,2,-1,"  assembly comparison","TRIM2|GeneID=23321"]
["chr4",154476959,154476960,1,-1,"  assembly comparison","TRIM2|GeneID=23321"]
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["chr4",156483878,156483882,4,-1,"  assembly comparison","MAP9|GeneID=79884"]
["chr4",156484309,156484311,2,-1,"  assembly comparison","MAP9|GeneID=79884"]
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["chr4",156871034,156871035,1,-1,"  assembly comparison","GUCY1A3|GeneID=2982"]
["chr4",156873038,156873039,1,-1,"  assembly comparison","GUCY1A3|GeneID=2982"]
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["chr4",160499757,160499758,1,-1,"  assembly comparison","RAPGEF2|GeneID=9693"]
["chr4",163304294,163304295,1,-1,"  assembly comparison","FSTL5|GeneID=56884"]
["chr4",164465355,164465356,1,-1,"  assembly comparison","NPY1R|GeneID=4886"]
["chr4",164486305,164486756,452,-1,"  Agilent 24M","NPY5R|GeneID=4889"]
["chr4",166219852,166229601,3088,-1,"  mate pair","TMEM192|GeneID=201931"]
["chr4",170084221,170084222,1,-1,"  assembly comparison","PALLD|GeneID=23022"]
["chr4",170086061,170086062,1,-1,"  assembly comparison","PALLD|GeneID=23022"]
["chr4",170167914,170167915,1,-1,"  assembly comparison","CBR4|GeneID=84869"]
["chr4",171218043,171218044,1,-1,"  assembly comparison","AADAT|GeneID=51166"]
["chr4",175476229,175476232,3,-1,"  assembly comparison","KIAA1712|GeneID=80817"]
["chr4",175477506,175477510,4,-1,"  assembly comparison","KIAA1712|GeneID=80817"]
["chr4",177339348,177339349,1,-1,"  assembly comparison","WDR17|GeneID=116966"]
["chr4",177340550,177340552,2,-1,"  assembly comparison","WDR17|GeneID=116966"]
["chr4",177340571,177340575,4,-1,"  assembly comparison","WDR17|GeneID=116966"]
["chr4",177486598,177486600,2,-1,"  assembly comparison","SPCS3|GeneID=60559"]
["chr4",177490207,177490208,1,-1,"  assembly comparison","SPCS3|GeneID=60559"]
["chr4",177842079,177842082,3,-1,"  assembly comparison","VEGFC|GeneID=7424"]
["chr4",184475318,184475319,1,-1,"  assembly comparison","WWC2|GeneID=80014"]
["chr4",184604553,184604556,3,-1,"  assembly comparison","CDKN2AIP|GeneID=55602"]
["chr4",185247636,185247637,1,-1,"  assembly comparison","ENPP6|GeneID=133121"]
["chr4",185546389,185546394,5,-1,"  assembly comparison","IRF2|GeneID=3660"]
["chr4",186318243,186318244,1,-1,"  assembly comparison","KIAA1430|GeneID=57587"]
["chr4",186318525,186318526,1,-1,"  assembly comparison","KIAA1430|GeneID=57587"]
["chr4",186318572,186318573,1,-1,"  assembly comparison","KIAA1430|GeneID=57587"]
["chr4",186318814,186318816,2,-1,"  assembly comparison","KIAA1430|GeneID=57587"]
["chr4",186744294,186744296,2,-1,"  assembly comparison","SORBS2|GeneID=8470"]
["chr4",187329071,187336461,4674,-1,"  mate pair","FAM149A|GeneID=25854"]
["chr2",895406,895921,516,-1,"  NimbleGen 42M","LOC391343|GeneID=391343"]
["chr2",1773004,1773005,1,-1,"  assembly comparison","MYT1L|GeneID=23040"]
["chr2",5752280,5752281,1,-1,"  assembly comparison","SOX11|GeneID=6664"]
["chr2",5753166,5753167,1,-1,"  assembly comparison","SOX11|GeneID=6664"]
["chr2",9463545,9464080,536,-1,"  NimbleGen 42M","ITGB1BP1|GeneID=9270"]
["chr2",9546861,9546863,2,-1,"  assembly comparison","ADAM17|GeneID=6868"]
["chr2",10134767,10138539,4376,-1,"  mate pair","CYS1|GeneID=192668"]
["chr2",10628417,10628418,1,-1,"  assembly comparison","NOL10|GeneID=79954"]
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["chr2",11698712,11698713,1,-1,"  assembly comparison","GREB1|GeneID=9687"]
["chr2",11884113,11884114,1,-1,"  assembly comparison","LPIN1|GeneID=23175"]
["chr2",12800276,12800278,2,-1,"  assembly comparison","TRIB2|GeneID=28951"]
["chr2",17700239,17700249,10,-1,"  assembly comparison","VSNL1|GeneID=7447"]
["chr2",19414770,19414771,1,-1,"  assembly comparison","OSR1|GeneID=130497"]
["chr2",20265355,20265356,1,-1,"  assembly comparison","SDC1|GeneID=6382"]
["chr2",20730371,20730372,1,-1,"  assembly comparison","GDF7|GeneID=151449"]
["chr2",24986596,24999044,4881,-1,"  mate pair","ADCY3|GeneID=109"]
["chr2",25310162,25310163,1,-1,"  assembly comparison","DNMT3A|GeneID=1788"]
["chr2",25417196,25418944,1749,-1,"  NimbleGen 42M","DNMT3A|GeneID=1788"]
["chr2",26467449,26467451,2,-1,"  assembly comparison","SELI|GeneID=85465"]
["chr2",26554326,26554328,2,-1,"  assembly comparison","OTOF|GeneID=9381"]
["chr2",26806207,26806208,1,-1,"  assembly comparison","KCNK3|GeneID=3777"]
["chr2",27023974,27023975,1,-1,"  assembly comparison","DPYSL5|GeneID=56896"]
["chr2",27024480,27024482,2,-1,"  assembly comparison","DPYSL5|GeneID=56896"]
["chr2",27177759,27177809,51,-1,"  split read","CGREF1|GeneID=10669"]
["chr2",27177843,27177894,51,-1,"  assembly comparison","CGREF1|GeneID=10669"]
["chr2",27293522,27293523,1,-1,"  assembly comparison","C2orf28|GeneID=51374"]
["chr2",28876597,28876597,1,-1,"  assembly comparison","PPP1CB|GeneID=5500"]
["chr2",28876618,28876619,1,-1,"  assembly comparison","PPP1CB|GeneID=5500"]
["chr2",29024258,29024259,1,-1,"  assembly comparison","WDR43|GeneID=23160"]
["chr2",29024324,29024325,1,-1,"  assembly comparison","WDR43|GeneID=23160"]
["chr2",29269529,29269533,4,-1,"  assembly comparison","ALK|GeneID=238"]
["chr2",30719357,30719361,4,-1,"  assembly comparison","LCLAT1|GeneID=253558"]
["chr2",31343156,31343164,8,-1,"  assembly comparison","EHD3|GeneID=30845"]
["chr2",31411621,31411623,2,-1,"  assembly comparison","XDH|GeneID=7498"]
["chr2",33641491,33641495,4,-1,"  assembly comparison","RASGRP3|GeneID=25780"]
["chr2",33641568,33641570,2,-1,"  assembly comparison","RASGRP3|GeneID=25780"]
["chr2",33641794,33641799,5,-1,"  assembly comparison","RASGRP3|GeneID=25780"]
["chr2",33642233,33642235,2,-1,"  assembly comparison","RASGRP3|GeneID=25780"]
["chr2",33804653,33804656,3,-1,"  assembly comparison","MYADML|GeneID=151325"]
["chr2",36629556,36629557,1,-1,"  assembly comparison","CRIM1|GeneID=51232"]
["chr2",36630881,36630882,1,-1,"  assembly comparison","CRIM1|GeneID=51232"]
["chr2",36633159,36633163,4,-1,"  assembly comparison","FEZ2|GeneID=9637"]
["chr2",37187230,37187231,1,-1,"  assembly comparison","EIF2AK2|GeneID=5610"]
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["chr2",46664262,46664263,1,-1,"  assembly comparison","RHOQ|GeneID=23433"]
["chr2",46706045,46706046,1,-1,"  assembly comparison","CRIPT|GeneID=9419"]
["chr2",47888321,47888322,1,-1,"  assembly comparison","FBXO11|GeneID=80204"]
["chr2",48521455,48521458,3,-1,"  assembly comparison","KLRAQ1|GeneID=129285"]
["chr2",50001376,50001386,10,-1,"  assembly comparison","NRXN1|GeneID=9378"]
["chr2",54749438,54749439,1,-1,"  assembly comparison","SPTBN1|GeneID=6711"]
["chr2",55053548,55053552,4,-1,"  assembly comparison","RTN4|GeneID=57142"]
["chr2",55253355,55253356,1,-1,"  assembly comparison","C2orf63|GeneID=130162"]
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["chr2",55715969,55715970,1,-1,"  assembly comparison","PNPT1|GeneID=87178"]
["chr2",55716574,55716578,4,-1,"  assembly comparison","PNPT1|GeneID=87178"]
["chr2",55716614,55716616,2,-1,"  assembly comparison","PNPT1|GeneID=87178"]
["chr2",60540807,60540808,1,-1,"  assembly comparison","BCL11A|GeneID=53335"]
["chr2",60634121,60634122,1,-1,"  assembly comparison","BCL11A|GeneID=53335"]
["chr2",61003682,61003683,1,-1,"  assembly comparison","REL|GeneID=5966"]
["chr2",61268153,61268157,4,-1,"  assembly comparison","USP34|GeneID=9736"]
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["chr2",63202038,63202040,2,-1,"  assembly comparison","LOC51057|GeneID=51057"]
["chr2",63702720,63702722,2,-1,"  assembly comparison","LOC388955|GeneID=388955"]
["chr2",64713521,64713522,1,-1,"  assembly comparison","SERTAD2|GeneID=9792"]
["chr2",65350843,65350845,2,-1,"  assembly comparison","ACTR2|GeneID=10097"]
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["chr2",68255658,68255659,1,-1,"  assembly comparison","PNO1|GeneID=56902"]
["chr2",68256300,68256310,10,-1,"  assembly comparison","PNO1|GeneID=56902"]
["chr2",68365021,68365022,1,-1,"  assembly comparison","CNRIP1|GeneID=25927"]
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["chr2",86218219,86218220,1,-1,"  assembly comparison","PTCD3|GeneID=55037"]
["chr2",86222696,86222697,1,-1,"  assembly comparison","PTCD3|GeneID=55037"]
["chr2",86585156,86585161,5,-1,"  assembly comparison","VPS24|GeneID=51652"]
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["chr2",88251048,88251061,14,-1,"  split read","THNSL2|GeneID=55258"]
["chr2",88251072,88251086,14,-1,"  assembly comparison","THNSL2|GeneID=55258"]
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["chr2",206569295,206569296,1,-1,"  assembly comparison","INO80D|GeneID=54891"]
["chr2",206569884,206569885,1,-1,"  assembly comparison","INO80D|GeneID=54891"]
["chr2",206571420,206571422,2,-1,"  assembly comparison","INO80D|GeneID=54891"]
["chr2",207738684,207738685,1,-1,"  assembly comparison","KLF7|GeneID=8609"]
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["chr2",208177462,208177466,4,-1,"  assembly comparison","CREB1|GeneID=1385"]
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["chr2",222866897,222866898,1,-1,"  assembly comparison","PAX3|GeneID=5077"]
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["chr2",225044605,225044611,6,-1,"  assembly comparison","CUL3|GeneID=8452"]
["chr2",225973964,225973967,3,-1,"  assembly comparison","KIAA1486|GeneID=57624"]
["chr2",228130560,228130564,4,-1,"  assembly comparison","AGFG1|GeneID=3267"]
["chr2",228553631,228553632,1,-1,"  assembly comparison","SPHKAP|GeneID=80309"]
["chr2",231117462,231117463,1,-1,"  assembly comparison","SP100|GeneID=6672"]
["chr2",231569283,231569309,27,-1,"  split read","SPATA3|GeneID=130560"]
["chr2",232087127,232087129,2,-1,"  assembly comparison","C2orf52|GeneID=151477"]
["chr2",233420470,233420473,3,-1,"  assembly comparison","GIGYF2|GeneID=26058"]
["chr2",233452384,233452387,3,-1,"  assembly comparison","NGEF|GeneID=25791"]
["chr2",233825032,233825033,1,-1,"  assembly comparison","ATG16L1|GeneID=55054"]
["chr2",233868317,233868318,1,-1,"  assembly comparison","ATG16L1|GeneID=55054"]
["chr2",234265079,234265084,5,-1,"  assembly comparison","UGT1A6|GeneID=54578"]
["chr2",234592228,234592232,4,-1,"  assembly comparison","TRPM8|GeneID=79054"]
["chr2",235068535,235068536,1,-1,"  assembly comparison","ARL4C|GeneID=10123"]
["chr2",236697677,236697678,1,-1,"  assembly comparison","AGAP1|GeneID=116987"]
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["chr2",239023346,239023348,2,-1,"  assembly comparison","ASB1|GeneID=51665"]
["chr2",240630447,240630449,3,-1,"  assembly comparison","LOC643905|GeneID=643905"]
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["chr9",12699653,12699657,4,-1,"  assembly comparison","TYRP1|GeneID=7306"]
["chr9",14073109,14073110,1,-1,"  assembly comparison","NFIB|GeneID=4781"]
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["chr9",16402719,16402730,12,-1,"  split read","BNC2|GeneID=54796"]
["chr9",16402752,16402764,12,-1,"  assembly comparison","BNC2|GeneID=54796"]
["chr9",16403197,16403198,1,-1,"  assembly comparison","BNC2|GeneID=54796"]
["chr9",16403369,16403370,1,-1,"  assembly comparison","BNC2|GeneID=54796"]
["chr9",16408443,16408453,10,-1,"  assembly comparison","BNC2|GeneID=54796"]
["chr9",17289259,17289262,4,-1,"  assembly comparison","CNTLN|GeneID=54875"]
["chr9",17289264,17289265,1,-1,"  assembly comparison","CNTLN|GeneID=54875"]
["chr9",20996628,20996631,3,-1,"  assembly comparison","PTPLAD2|GeneID=401494"]
["chr9",21400119,21400123,4,-1,"  assembly comparison","IFNA8|GeneID=3445"]
["chr9",22110812,22110815,3,-1,"  assembly comparison","CDKN2BAS|GeneID=100048912"]
["chr9",25667309,25667310,1,-1,"  assembly comparison","TUSC1|GeneID=286319"]
["chr9",27179804,27186618,3036,-1,"  mate pair","TEK|GeneID=7010"]
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["chr9",34980807,34981332,526,-1,"  Agilent 24M","DNAJB5|GeneID=25822"]
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["chr9",76892952,76892957,5,-1,"  assembly comparison","C9orf95|GeneID=54981"]
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["chr9",109133802,109133803,1,-1,"  assembly comparison","RAD23B|GeneID=5887"]
["chr9",110818778,110818780,2,-1,"  assembly comparison","C9orf5|GeneID=23731"]
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["chr9",114675750,114675751,1,-1,"  assembly comparison","SNX30|GeneID=401548"]
["chr9",114675751,114675752,1,-1,"  assembly comparison","SNX30|GeneID=401548"]
["chr9",114692877,114692902,26,-1,"  split read","SLC46A2|GeneID=57864"]
["chr9",114966020,114966021,1,-1,"  assembly comparison","SLC31A2|GeneID=1318"]
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["chr9",115868746,115873377,2554,-1,"  mate pair","AMBP|GeneID=259"]
["chr9",115878822,115887707,4394,-1,"  mate pair","AMBP|GeneID=259"]
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["chr9",116413651,116428501,5376,-1,"  mate pair","C9orf91|GeneID=203197"]
["chr9",122564452,122564454,2,-1,"  assembly comparison","FBXW2|GeneID=26190"]
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["chr9",126746496,126746497,1,-1,"  assembly comparison","C9orf126|GeneID=286205"]
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["chr9",130496118,130496119,1,-1,"  assembly comparison","SET|GeneID=6418"]
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["chr9",131629899,131629903,4,-1,"  assembly comparison","C9orf78|GeneID=51759"]
["chr9",131670488,131670491,3,-1,"  assembly comparison","USP20|GeneID=10868"]
["chr9",132339927,132347778,3988,-1,"  mate pair","ASS1|GeneID=445"]
["chr9",132444870,132444879,9,-1,"  assembly comparison","FUBP3|GeneID=8939"]
["chr9",133389821,133389825,4,-1,"  assembly comparison","UCK1|GeneID=83549"]
["chr9",134362572,134371573,3567,-1,"  mate pair","RP11-738I14.8|GeneID=389799"]
["chr9",134761155,134761156,1,-1,"  assembly comparison","TSC1|GeneID=7248"]
["chr9",135187960,135187961,1,-1,"  assembly comparison","SURF6|GeneID=6838"]
["chr9",135199241,135199246,5,-1,"  assembly comparison","MED22|GeneID=6837"]
["chr9",135325147,135325159,12,-1,"  assembly comparison","C9orf7|GeneID=11094"]
["chr9",135515500,135525653,3330,-1,"  mate pair","SARDH|GeneID=1757"]
["chr9",135887279,135887281,2,-1,"  assembly comparison","BRD3|GeneID=8019"]
["chr9",136013800,136013800,1,-1,"  assembly comparison","WDR5|GeneID=11091"]
["chr9",136470529,136470533,4,-1,"  assembly comparison","RXRA|GeneID=6256"]
["chr9",136875059,136875063,4,-1,"  assembly comparison","COL5A1|GeneID=1289"]
["chr9",137976766,137976769,3,-1,"  assembly comparison","UBAC1|GeneID=10422"]
["chr9",138239065,138239069,4,-1,"  assembly comparison","QSOX2|GeneID=169714"]
["chr9",138863458,138863459,1,-1,"  assembly comparison","PHPT1|GeneID=29085"]
["chr9",138940753,138940755,2,-1,"  assembly comparison","TRAF2|GeneID=7186"]
["chr9",138951117,138957519,5693,-1,"  mate pair","FBXW5|GeneID=54461"]
["chr9",139077772,139077813,42,-1,"  split read","C9orf140|GeneID=89958"]
["chr9",139373262,139382581,4095,-1,"  mate pair","FLJ20433|GeneID=54932"]
["chr9",139476270,139476271,1,-1,"  assembly comparison","PNPLA7|GeneID=375775"]
["chr13",18524896,18524898,2,-1,"  assembly comparison","DKFZp686A1627|GeneID=266695"]
["chr13",19558911,19558913,2,-1,"  assembly comparison","ZMYM2|GeneID=7750"]
["chr13",20255503,20255504,1,-1,"  assembly comparison","XPO4|GeneID=64328"]
["chr13",20445672,20445674,2,-1,"  assembly comparison","LATS2|GeneID=26524"]
["chr13",20639052,20640507,1456,-1,"  Agilent 24M","C13orf3|GeneID=221150"]
["chr13",21173875,21173879,4,-1,"  assembly comparison","FGF9|GeneID=2254"]
["chr13",22801219,22801224,5,-1,"  assembly comparison","SACS|GeneID=26278"]
["chr13",24052763,24052763,1,-1,"  assembly comparison","LOC374491|GeneID=374491"]
["chr13",24355007,24355010,3,-1,"  assembly comparison","CENPJ|GeneID=55835"]
["chr13",24403444,24403446,2,-1,"  assembly comparison","RP11-756A22.3|GeneID=646405"]
["chr13",24718560,24718564,4,-1,"  assembly comparison","MTMR6|GeneID=9107"]
["chr13",26230537,26230538,1,-1,"  assembly comparison","GPR12|GeneID=2835"]
["chr13",27092563,27092570,7,-1,"  assembly comparison","LNX2|GeneID=222484"]
["chr13",27765551,27765553,2,-1,"  assembly comparison","PAN3|GeneID=255967"]
["chr13",28970953,28974249,3818,-1,"  mate pair","KIAA0774|GeneID=23281"]
["chr13",28976539,28976540,1,-1,"  assembly comparison","KIAA0774|GeneID=23281"]
["chr13",28977599,28977600,1,-1,"  assembly comparison","KIAA0774|GeneID=23281"]
["chr13",28984115,28984116,1,-1,"  assembly comparison","SLC7A1|GeneID=6541"]
["chr13",28989232,28993621,3156,-1,"  mate pair","SLC7A1|GeneID=6541"]
["chr13",29677768,29677770,2,-1,"  assembly comparison","KATNAL1|GeneID=84056"]
["chr13",29677924,29677926,2,-1,"  assembly comparison","KATNAL1|GeneID=84056"]
["chr13",29678114,29678120,6,-1,"  assembly comparison","KATNAL1|GeneID=84056"]
["chr13",29933104,29933105,1,-1,"  assembly comparison","HMGB1|GeneID=3146"]
["chr13",30752235,30761768,3511,-1,"  mate pair","B3GALTL|GeneID=145173"]
["chr13",35143540,35143541,1,-1,"  assembly comparison","NBEA|GeneID=26960"]
["chr13",35244812,35244813,1,-1,"  assembly comparison","DCLK1|GeneID=9201"]
["chr13",35774375,35774378,4,-1,"  assembly comparison","SPG20|GeneID=23111"]
["chr13",36169444,36169446,2,-1,"  assembly comparison","C13orf36|GeneID=400120"]
["chr13",36299922,36299923,1,-1,"  assembly comparison","RFXAP|GeneID=5994"]
["chr13",38358550,38358551,1,-1,"  assembly comparison","FREM2|GeneID=341640"]
["chr13",38438589,38438590,1,-1,"  assembly comparison","STOML3|GeneID=161003"]
["chr13",38815783,38815787,4,-1,"  assembly comparison","LHFP|GeneID=10186"]
["chr13",39930637,39930639,2,-1,"  assembly comparison","LOC646982|GeneID=646982"]
["chr13",40601819,40601821,2,-1,"  assembly comparison","KBTBD6|GeneID=89890"]
["chr13",41792420,41792428,8,-1,"  assembly comparison","AKAP11|GeneID=11215"]
["chr13",42579686,42579692,6,-1,"  assembly comparison","DNAJC15|GeneID=29103"]
["chr13",42685701,42685702,1,-1,"  assembly comparison","ENOX1|GeneID=55068"]
["chr13",42685702,42685703,1,-1,"  assembly comparison","ENOX1|GeneID=55068"]
["chr13",43351955,43351973,18,-1,"  assembly comparison","C13orf31|GeneID=144811"]
["chr13",43364329,43364330,1,-1,"  assembly comparison","C13orf31|GeneID=144811"]
["chr13",44412020,44412021,1,-1,"  assembly comparison","NUFIP1|GeneID=26747"]
["chr13",44852513,44862607,3278,-1,"  mate pair","LOC100190939|GeneID=100190939"]
["chr13",44855308,44855309,1,-1,"  assembly comparison","LOC100190939|GeneID=100190939"]
["chr13",45068389,45068990,602,-1,"  Agilent 24M","FLJ32682|GeneID=220081"]
["chr13",45252417,45252418,1,-1,"  assembly comparison","SIAH3|GeneID=283514"]
["chr13",45254931,45254936,5,-1,"  assembly comparison","SIAH3|GeneID=283514"]
["chr13",49004552,49004553,1,-1,"  assembly comparison","RCBTB1|GeneID=55213"]
["chr13",49005212,49005227,15,-1,"  assembly comparison","RCBTB1|GeneID=55213"]
["chr13",49485676,49485677,1,-1,"  assembly comparison","TRIM13|GeneID=10206"]
["chr13",49487230,49487246,16,-1,"  assembly comparison","TRIM13|GeneID=10206"]
["chr13",49487247,49487256,9,-1,"  assembly comparison","TRIM13|GeneID=10206"]
["chr13",51939889,51940501,612,-1,"  assembly comparison","CKAP2|GeneID=26586"]
["chr13",57200673,57200675,2,-1,"  assembly comparison","PCDH17|GeneID=27253"]
["chr13",65776546,65776547,1,-1,"  assembly comparison","PCDH9|GeneID=5101"]
["chr13",69611536,69611545,9,-1,"  assembly comparison","ATXN8OS|GeneID=6315"]
["chr13",70910734,70910738,4,-1,"  assembly comparison","DACH1|GeneID=1602"]
["chr13",72180978,72180979,1,-1,"  assembly comparison","C13orf37|GeneID=440145"]
["chr13",72231197,72231198,1,-1,"  assembly comparison","DIS3|GeneID=22894"]
["chr13",73605986,73605988,2,-1,"  assembly comparison","KLF12|GeneID=11278"]
["chr13",76353972,76353973,1,-1,"  assembly comparison","KCTD12|GeneID=115207"]
["chr13",79025343,79025345,2,-1,"  assembly comparison","NDFIP2|GeneID=54602"]
["chr13",90848913,90848937,24,-1,"  assembly comparison","GPC5|GeneID=2262"]
["chr13",93889842,93889843,1,-1,"  assembly comparison","DCT|GeneID=1638"]
["chr13",94471261,94471262,1,-1,"  assembly comparison","ABCC4|GeneID=10257"]
["chr13",98134822,98134823,1,-1,"  assembly comparison","SLC15A1|GeneID=6564"]
["chr13",99414743,99414744,1,-1,"  assembly comparison","ZIC5|GeneID=85416"]
["chr13",99420701,99420704,3,-1,"  assembly comparison","ZIC5|GeneID=85416"]
["chr13",99982059,99982066,7,-1,"  assembly comparison","A2LD1|GeneID=87769"]
["chr13",100505210,100505212,2,-1,"  assembly comparison","NALCN|GeneID=259232"]
["chr13",101171515,101171518,3,-1,"  assembly comparison","FGF14|GeneID=2259"]
["chr13",102129162,102129168,6,-1,"  assembly comparison","TPP2|GeneID=7174"]
["chr13",102291054,102291055,1,-1,"  assembly comparison","BIVM|GeneID=54841"]
["chr13",102495458,102495463,5,-1,"  assembly comparison","SLC10A2|GeneID=6555"]
["chr13",105941299,105941300,1,-1,"  assembly comparison","EFNB2|GeneID=1948"]
["chr13",105994190,105994191,1,-1,"  assembly comparison","ARGLU1|GeneID=55082"]
["chr13",106618905,106618906,1,-1,"  assembly comparison","FAM155A|GeneID=728215"]
["chr13",106619319,106619320,1,-1,"  assembly comparison","FAM155A|GeneID=728215"]
["chr13",106619774,106619778,4,-1,"  assembly comparison","FAM155A|GeneID=728215"]
["chr13",106620313,106620314,1,-1,"  assembly comparison","FAM155A|GeneID=728215"]
["chr13",107317073,107317077,4,-1,"  assembly comparison","FAM155A|GeneID=728215"]
["chr13",107683838,107683842,4,-1,"  assembly comparison","ABHD13|GeneID=84945"]
["chr13",109205588,109205589,1,-1,"  assembly comparison","IRS2|GeneID=8660"]
["chr13",109962639,109962641,2,-1,"  assembly comparison","COL4A2|GeneID=1284"]
["chr13",109973855,109973856,1,-1,"  assembly comparison","RAB20|GeneID=55647"]
["chr13",110164200,110164201,1,-1,"  assembly comparison","ING1|GeneID=3621"]
["chr13",110743801,110743802,1,-1,"  assembly comparison","ARHGEF7|GeneID=8874"]
["chr13",112585437,112585440,3,-1,"  assembly comparison","ATP11A|GeneID=23250"]
["chr13",112588595,112588597,2,-1,"  assembly comparison","ATP11A|GeneID=23250"]
["chr13",112967271,112967272,1,-1,"  assembly comparison","CUL4A|GeneID=8451"]
["chr13",113575223,113575225,2,-1,"  assembly comparison","GAS6|GeneID=2621"]
["chr13",113577235,113577248,13,-1,"  assembly comparison","GAS6|GeneID=2621"]
["chr13",113609985,113610067,82,-1,"  assembly comparison","FAM70B|GeneID=348013"]
["chr10",311429,311431,2,-1,"  assembly comparison","DIP2C|GeneID=22982"]
["chr10",3168970,3168974,4,-1,"  assembly comparison","PFKP|GeneID=5214"]
["chr10",3204999,3205000,1,-1,"  assembly comparison","PITRM1|GeneID=10531"]
["chr10",4683297,4683298,1,-1,"  assembly comparison","LOC100216001|GeneID=100216001"]
["chr10",4995599,4995603,4,-1,"  assembly comparison","AKR1C1|GeneID=1645"]
["chr10",5845381,5845383,2,-1,"  assembly comparison","C10orf18|GeneID=54906"]
["chr10",5943876,5943887,11,-1,"  assembly comparison","ANKRD16|GeneID=54522"]
["chr10",6019500,6019502,2,-1,"  assembly comparison","FBXO18|GeneID=84893"]
["chr10",6197859,6197863,4,-1,"  assembly comparison","RBM17|GeneID=84991"]
["chr10",7245114,7245118,4,-1,"  assembly comparison","SFMBT2|GeneID=57713"]
["chr10",7642941,7642942,1,-1,"  assembly comparison","ITIH5|GeneID=80760"]
["chr10",7643024,7643025,1,-1,"  assembly comparison","ITIH5|GeneID=80760"]
["chr10",8126716,8136939,3971,-1,"  mate pair","FLJ45983|GeneID=399717/GATA3|GeneID=2625"]
["chr10",11414617,11414653,36,-1,"  assembly comparison","CUGBP2|GeneID=10659"]
["chr10",11542656,11542660,4,-1,"  assembly comparison","USP6NL|GeneID=9712"]
["chr10",12002359,12002360,1,-1,"  assembly comparison","UPF2|GeneID=26019"]
["chr10",12979106,12979107,1,-1,"  assembly comparison","CCDC3|GeneID=83643"]
["chr10",13360126,13360127,1,-1,"  assembly comparison","PHYH|GeneID=5264"]
["chr10",13404798,13410760,3892,-1,"  mate pair","SEPHS1|GeneID=22929"]
["chr10",13571378,13582716,3269,-1,"  mate pair","BEND7|GeneID=222389"]
["chr10",14989882,14989883,1,-1,"  assembly comparison","DCLRE1C|GeneID=64421"]
["chr10",15155683,15155684,1,-1,"  assembly comparison","OLAH|GeneID=55301"]
["chr10",15158000,15158002,2,-1,"  assembly comparison","ACBD7|GeneID=414149"]
["chr10",15158523,15158525,2,-1,"  assembly comparison","ACBD7|GeneID=414149"]
["chr10",15189131,15189132,1,-1,"  assembly comparison","NMT2|GeneID=9397"]
["chr10",18729591,18729592,1,-1,"  assembly comparison","CACNB2|GeneID=783"]
["chr10",18868692,18868694,2,-1,"  assembly comparison","CACNB2|GeneID=783"]
["chr10",18869264,18869266,2,-1,"  assembly comparison","CACNB2|GeneID=783"]
["chr10",18874663,18874664,1,-1,"  assembly comparison","NSUN6|GeneID=221078"]
["chr10",21847487,21847488,1,-1,"  assembly comparison","C10orf140|GeneID=387640"]
["chr10",22864833,22864834,1,-1,"  assembly comparison","PIP4K2A|GeneID=5305"]
["chr10",23647096,23647097,1,-1,"  assembly comparison","C10orf67|GeneID=256815"]
["chr10",24584283,24584287,4,-1,"  assembly comparison","PRINS|GeneID=100169750"]
["chr10",24913174,24913176,2,-1,"  assembly comparison","ARHGAP21|GeneID=57584"]
["chr10",25931008,25931009,1,-1,"  assembly comparison","GPR158|GeneID=57512"]
["chr10",27038468,27041985,3372,-1,"  mate pair","PDSS1|GeneID=23590"]
["chr10",27268894,27268907,14,-1,"  split read","C10orf51|GeneID=387644"]
["chr10",27334455,27334457,2,-1,"  assembly comparison","ANKRD26|GeneID=22852"]
["chr10",27525488,27525490,2,-1,"  assembly comparison","ACBD5|GeneID=91452"]
["chr10",27576709,27576713,4,-1,"  assembly comparison","LOC387646|GeneID=387646"]
["chr10",27577042,27577059,18,-1,"  split read","LOC387646|GeneID=387646"]
["chr10",28141122,28141124,2,-1,"  assembly comparison","ARMC4|GeneID=55130"]
["chr10",28948912,28948914,2,-1,"  assembly comparison","WAC|GeneID=51322"]
["chr10",28949306,28949307,1,-1,"  assembly comparison","WAC|GeneID=51322"]
["chr10",29011534,29011535,1,-1,"  assembly comparison","BAMBI|GeneID=25805"]
["chr10",30639533,30639534,1,-1,"  assembly comparison","MTPAP|GeneID=55149"]
["chr10",33229425,33230534,1110,-1,"  NimbleGen 42M","ITGB1|GeneID=3688"]
["chr10",33237138,33237142,4,-1,"  assembly comparison","ITGB1|GeneID=3688"]
["chr10",35967352,35967353,1,-1,"  assembly comparison","FZD8|GeneID=8325"]
["chr10",37491190,37524259,33070,-1,"  NimbleGen 42M","ANKRD30A|GeneID=91074"]
["chr10",38279513,38279514,1,-1,"  assembly comparison","ZNF25|GeneID=219749"]
["chr10",38423293,38423293,1,-1,"  assembly comparison","ZNF37A|GeneID=7587"]
["chr10",38449371,38449372,1,-1,"  assembly comparison","ZNF37A|GeneID=7587"]
["chr10",42149007,42149008,1,-1,"  assembly comparison","LOC441666|GeneID=441666"]
["chr10",44819892,44819893,1,-1,"  assembly comparison","ZNF22|GeneID=7570"]
["chr10",48055718,48065267,4567,-1,"  mate pair","GDF10|GeneID=2662"]
["chr10",48058669,48058672,3,-1,"  assembly comparison","GDF10|GeneID=2662"]
["chr10",49088872,49099654,3962,-1,"  mate pair","FRMPD2|GeneID=143162"]
["chr10",49892567,49892569,2,-1,"  assembly comparison","C10orf72|GeneID=196740"]
["chr10",49892668,49892670,2,-1,"  assembly comparison","C10orf72|GeneID=196740"]
["chr10",49893186,49893190,4,-1,"  assembly comparison","C10orf72|GeneID=196740"]
["chr10",49894192,49894196,4,-1,"  assembly comparison","C10orf72|GeneID=196740"]
["chr10",50203780,50203780,1,-1,"  assembly comparison","C10orf71|GeneID=118461"]
["chr10",59717629,59717630,1,-1,"  assembly comparison","CISD1|GeneID=55847"]
["chr10",61218860,61218861,1,-1,"  assembly comparison","CCDC6|GeneID=8030"]
["chr10",61219664,61219665,1,-1,"  assembly comparison","CCDC6|GeneID=8030"]
["chr10",61603937,61615255,2659,-1,"  mate pair","ANK3|GeneID=288"]
["chr10",63523416,63523419,3,-1,"  assembly comparison","ARID5B|GeneID=84159"]
["chr10",63830591,63830592,1,-1,"  assembly comparison","ZNF365|GeneID=22891"]
["chr10",63831251,63831252,1,-1,"  assembly comparison","ZNF365|GeneID=22891"]
["chr10",64242050,64242051,1,-1,"  assembly comparison","EGR2|GeneID=1959"]
["chr10",64584022,64584023,1,-1,"  assembly comparison","NRBF2|GeneID=29982"]
["chr10",64584524,64584527,3,-1,"  assembly comparison","NRBF2|GeneID=29982"]
["chr10",69346619,69346623,4,-1,"  assembly comparison","SIRT1|GeneID=23411"]
["chr10",70412773,70412776,3,-1,"  assembly comparison","DDX21|GeneID=9188"]
["chr10",71581038,71581046,8,-1,"  assembly comparison","SAR1A|GeneID=56681"]
["chr10",71806875,71815010,3207,-1,"  mate pair","LRRC20|GeneID=55222"]
["chr10",71998173,71998174,1,-1,"  assembly comparison","KIAA1274|GeneID=27143"]
["chr10",72027620,72027621,1,-1,"  assembly comparison","PRF1|GeneID=5551"]
["chr10",72191919,72191920,1,-1,"  assembly comparison","ADAMTS14|GeneID=140766"]
["chr10",72309165,72309167,2,-1,"  assembly comparison","SGPL1|GeneID=8879"]
["chr10",73518117,73518118,1,-1,"  assembly comparison","SPOCK2|GeneID=9806"]
["chr10",73763891,73763893,2,-1,"  assembly comparison","DNAJB12|GeneID=54788"]
["chr10",75238317,75238319,2,-1,"  assembly comparison","NDST2|GeneID=8509"]
["chr10",75347172,75347173,1,-1,"  assembly comparison","PLAU|GeneID=5328"]
["chr10",78303834,78303835,1,-1,"  assembly comparison","KCNMA1|GeneID=3778"]
["chr10",81894591,81895052,462,-1,"  Agilent 24M","PLAC9|GeneID=219348"]
["chr10",82117683,82117685,2,-1,"  assembly comparison","DYDC2|GeneID=84332"]
["chr10",82182391,82182392,1,-1,"  assembly comparison","C10orf58|GeneID=84293"]
["chr10",88484745,88484746,1,-1,"  assembly comparison","LDB3|GeneID=11155"]
["chr10",88485537,88485538,1,-1,"  assembly comparison","LDB3|GeneID=11155"]
["chr10",89613840,89613841,1,-1,"  assembly comparison","PTEN|GeneID=5728"]
["chr10",89716666,89716668,2,-1,"  assembly comparison","PTEN|GeneID=5728"]
["chr10",91169096,91169100,4,-1,"  assembly comparison","IFIT5|GeneID=24138"]
["chr10",91169117,91169121,4,-1,"  assembly comparison","IFIT5|GeneID=24138"]
["chr10",91180751,91180752,1,-1,"  assembly comparison","SLC16A12|GeneID=387700"]
["chr10",91182218,91182219,1,-1,"  assembly comparison","SLC16A12|GeneID=387700"]
["chr10",92662051,92662058,7,-1,"  assembly comparison","ANKRD1|GeneID=27063"]
["chr10",92901745,92901746,1,-1,"  assembly comparison","NUDT9P1|GeneID=119369"]
["chr10",92901746,92901747,1,-1,"  assembly comparison","NUDT9P1|GeneID=119369"]
["chr10",95278251,95278252,1,-1,"  assembly comparison","CEP55|GeneID=55165"]
["chr10",95452292,95452295,3,-1,"  assembly comparison","C10orf4|GeneID=118924"]
["chr10",95651467,95651470,3,-1,"  assembly comparison","TMEM20|GeneID=159371"]
["chr10",95708158,95708159,1,-1,"  assembly comparison","PIPSL|GeneID=266971"]
["chr10",95708351,95708366,16,-1,"  split read","PIPSL|GeneID=266971"]
["chr10",95708398,95708414,16,-1,"  assembly comparison","PIPSL|GeneID=266971"]
["chr10",97619013,97619014,1,-1,"  assembly comparison","ENTPD1|GeneID=953"]
["chr10",98270355,98270358,3,-1,"  assembly comparison","TM9SF3|GeneID=56889"]
["chr10",98271483,98271484,1,-1,"  assembly comparison","TM9SF3|GeneID=56889"]
["chr10",98748353,98748356,3,-1,"  assembly comparison","SLIT1|GeneID=6585"]
["chr10",99070238,99070239,1,-1,"  assembly comparison","FRAT1|GeneID=10023"]
["chr10",100167466,100167467,1,-1,"  assembly comparison","HPS1|GeneID=3257"]
["chr10",101456260,101456261,1,-1,"  assembly comparison","ENTPD7|GeneID=57089"]
["chr10",101900005,101900006,1,-1,"  assembly comparison","ERLIN1|GeneID=10613"]
["chr10",102123334,102123335,1,-1,"  assembly comparison","C10orf75|GeneID=90271"]
["chr10",102298848,102298850,2,-1,"  assembly comparison","HIF1AN|GeneID=55662"]
["chr10",102578574,102578579,5,-1,"  assembly comparison","PAX2|GeneID=5076"]
["chr10",102790348,102790349,1,-1,"  assembly comparison","SFXN3|GeneID=81855"]
["chr10",103519910,103519911,1,-1,"  assembly comparison","FGF8|GeneID=2253"]
["chr10",103977480,103978021,542,-1,"  Agilent 24M","ELOVL3|GeneID=83401"]
["chr10",104464054,104464057,3,-1,"  assembly comparison","ARL3|GeneID=403"]
["chr10",104564254,104564255,1,-1,"  assembly comparison","C10orf26|GeneID=54838"]
["chr10",104613095,104613096,1,-1,"  assembly comparison","C10orf32|GeneID=119032"]
["chr10",104619245,104619280,36,-1,"  split read","AS3MT|GeneID=57412"]
["chr10",104619320,104619356,36,-1,"  assembly comparison","AS3MT|GeneID=57412"]
["chr10",104836917,104836919,2,-1,"  assembly comparison","NT5C2|GeneID=22978"]
["chr10",104836977,104836978,1,-1,"  assembly comparison","NT5C2|GeneID=22978"]
["chr10",105349053,105349054,1,-1,"  assembly comparison","SH3PXD2A|GeneID=9644"]
["chr10",112034852,112034857,5,-1,"  assembly comparison","MXI1|GeneID=4601"]
["chr10",112647925,112647926,1,-1,"  assembly comparison","PDCD4|GeneID=27250"]
["chr10",115795566,115795571,5,-1,"  assembly comparison","ADRB1|GeneID=153"]
["chr10",115981707,115981708,1,-1,"  assembly comparison","TDRD1|GeneID=56165"]
["chr10",116044611,116044615,4,-1,"  assembly comparison","AFAP1L2|GeneID=84632"]
["chr10",116044661,116044664,3,-1,"  assembly comparison","AFAP1L2|GeneID=84632"]
["chr10",116181741,116181742,1,-1,"  assembly comparison","ABLIM1|GeneID=3983"]
["chr10",116184029,116184040,12,-1,"  split read","ABLIM1|GeneID=3983"]
["chr10",116184067,116184079,12,-1,"  assembly comparison","ABLIM1|GeneID=3983"]
["chr10",116725235,116725236,1,-1,"  assembly comparison","TRUB1|GeneID=142940"]
["chr10",118887609,118887610,1,-1,"  assembly comparison","VAX1|GeneID=11023"]
["chr10",118887621,118887622,1,-1,"  assembly comparison","VAX1|GeneID=11023"]
["chr10",119083929,119093168,4370,-1,"  mate pair","PDZD8|GeneID=118987"]
["chr10",119292437,119292438,1,-1,"  assembly comparison","EMX2|GeneID=2018"]
["chr10",119298070,119298074,4,-1,"  assembly comparison","EMX2|GeneID=2018"]
["chr10",119795962,119795963,1,-1,"  assembly comparison","RAB11FIP2|GeneID=22841"]
["chr10",120781768,120781775,7,-1,"  assembly comparison","NANOS1|GeneID=340719"]
["chr10",120783385,120783389,4,-1,"  assembly comparison","NANOS1|GeneID=340719"]
["chr10",120785208,120785209,1,-1,"  assembly comparison","EIF3A|GeneID=8661"]
["chr10",120886694,120886696,2,-1,"  assembly comparison","FAM45A|GeneID=404636"]
["chr10",120886696,120886697,1,-1,"  assembly comparison","FAM45A|GeneID=404636"]
["chr10",124350253,124367546,14346,-1,"  mate pair","DMBT1|GeneID=1755"]
["chr10",125438771,125438772,1,-1,"  assembly comparison","GPR26|GeneID=2849"]
["chr10",125440774,125440775,1,-1,"  assembly comparison","GPR26|GeneID=2849"]
["chr10",125444046,125444049,3,-1,"  assembly comparison","GPR26|GeneID=2849"]
["chr10",126515011,126515012,1,-1,"  assembly comparison","FAM175B|GeneID=23172"]
["chr10",126667456,126667457,1,-1,"  assembly comparison","CTBP2|GeneID=1488"]
["chr10",127692993,127692995,2,-1,"  assembly comparison","ADAM12|GeneID=8038"]
["chr10",129428173,129428174,1,-1,"  assembly comparison","FOXI2|GeneID=399823"]
["chr10",129771548,129771549,1,-1,"  assembly comparison","PTPRE|GeneID=5791"]
["chr10",129772395,129772395,1,-1,"  assembly comparison","PTPRE|GeneID=5791"]
["chr10",129773077,129773081,4,-1,"  assembly comparison","PTPRE|GeneID=5791"]
["chr10",131524852,131524853,1,-1,"  assembly comparison","EBF3|GeneID=253738"]
["chr10",133850490,133850502,12,-1,"  assembly comparison","DPYSL4|GeneID=10570"]
["chr10",134445761,134445762,1,-1,"  assembly comparison","INPP5A|GeneID=3632"]
["chr10",134793123,134793147,25,-1,"  split read","GPR123|GeneID=84435"]
["chr10",134793192,134793217,25,-1,"  assembly comparison","GPR123|GeneID=84435"]
["chr10",135086409,135086410,1,-1,"  assembly comparison","SPRN|GeneID=503542"]
["chr10",135121384,135121387,3,-1,"  assembly comparison","LOC619207|GeneID=619207"]
["chr5",237105,237109,4,-1,"  assembly comparison","PLEKHG4B|GeneID=153478"]
["chr5",237922,237927,5,-1,"  assembly comparison","PLEKHG4B|GeneID=153478"]
["chr5",263613,271295,3916,-1,"  mate pair","CCDC127|GeneID=133957"]
["chr5",271434,271435,2,-1,"  assembly comparison","SDHA|GeneID=6389"]
["chr5",496345,496365,21,-1,"  split read","EXOC3|GeneID=11336"]
["chr5",496372,496393,21,-1,"  assembly comparison","EXOC3|GeneID=11336"]
["chr5",713342,713344,2,-1,"  assembly comparison","TPPP|GeneID=11076"]
["chr5",744610,801731,57122,-1,"  NimbleGen 42M","TPPP|GeneID=11076"]
["chr5",1275216,1275218,2,-1,"  assembly comparison","SLC6A19|GeneID=340024"]
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["chr5",112388353,112388358,5,-1,"  assembly comparison","MCC|GeneID=4163"]
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["chr5",132188129,132195083,6464,-1,"  mate pair","SHROOM1|GeneID=134549"]
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["chr5",171570956,171570975,20,-1,"  split read","UBTD2|GeneID=92181"]
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["chr5",172314761,172314762,1,-1,"  assembly comparison","LOC100268168|GeneID=100268168"]
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["chr5",175958727,175958751,25,-1,"  split read","GPRIN1|GeneID=114787"]
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["chr5",176659676,176659677,1,-1,"  assembly comparison","NSD1|GeneID=64324"]
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